Multiple sequence alignment - TraesCS1A01G077800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G077800 chr1A 100.000 5820 0 0 1 5820 60734130 60739949 0.000000e+00 10748.0
1 TraesCS1A01G077800 chr1A 87.090 457 55 4 2982 3436 474226183 474225729 1.120000e-141 514.0
2 TraesCS1A01G077800 chr1A 80.851 188 31 5 4461 4646 474225625 474225441 6.080000e-30 143.0
3 TraesCS1A01G077800 chr1B 89.701 4709 223 107 588 5148 99755969 99751375 0.000000e+00 5768.0
4 TraesCS1A01G077800 chr1B 89.018 601 55 2 1 591 27083203 27082604 0.000000e+00 734.0
5 TraesCS1A01G077800 chr1B 88.462 286 33 0 1582 1867 499470712 499470427 4.320000e-91 346.0
6 TraesCS1A01G077800 chr1B 84.685 222 20 9 5154 5370 99751331 99751119 5.910000e-50 209.0
7 TraesCS1A01G077800 chr1B 88.535 157 14 3 5391 5547 99750421 99750269 2.770000e-43 187.0
8 TraesCS1A01G077800 chr1B 100.000 30 0 0 2348 2377 99754119 99754090 8.150000e-04 56.5
9 TraesCS1A01G077800 chr1D 93.623 1725 63 23 588 2286 62601763 62600060 0.000000e+00 2532.0
10 TraesCS1A01G077800 chr1D 89.280 1194 48 31 2316 3461 62600057 62598896 0.000000e+00 1423.0
11 TraesCS1A01G077800 chr1D 88.819 948 46 29 3501 4405 62598767 62597837 0.000000e+00 1109.0
12 TraesCS1A01G077800 chr1D 89.202 815 44 19 4363 5148 62597840 62597041 0.000000e+00 977.0
13 TraesCS1A01G077800 chr1D 91.667 228 16 3 5515 5742 62569366 62569142 4.380000e-81 313.0
14 TraesCS1A01G077800 chr1D 81.283 187 19 9 5315 5500 62571252 62571081 2.830000e-28 137.0
15 TraesCS1A01G077800 chr1D 100.000 30 0 0 2348 2377 62599935 62599906 8.150000e-04 56.5
16 TraesCS1A01G077800 chr7A 91.015 601 41 4 1 591 108775138 108774541 0.000000e+00 798.0
17 TraesCS1A01G077800 chr7A 90.635 598 45 4 1 588 725726489 725727085 0.000000e+00 784.0
18 TraesCS1A01G077800 chr7A 89.967 598 48 9 1 588 50581180 50581775 0.000000e+00 761.0
19 TraesCS1A01G077800 chr4D 90.833 600 41 10 1 588 64182195 64182792 0.000000e+00 791.0
20 TraesCS1A01G077800 chr4D 91.909 482 34 5 2975 3454 386436142 386435664 0.000000e+00 669.0
21 TraesCS1A01G077800 chr4D 86.241 407 54 2 1461 1866 88122199 88122604 1.930000e-119 440.0
22 TraesCS1A01G077800 chr4D 83.146 178 28 2 4466 4642 88123164 88123340 1.680000e-35 161.0
23 TraesCS1A01G077800 chr4D 88.889 117 13 0 1464 1580 386437957 386437841 1.690000e-30 145.0
24 TraesCS1A01G077800 chr3B 90.532 602 44 4 1 591 552474502 552473903 0.000000e+00 784.0
25 TraesCS1A01G077800 chr3B 87.912 455 53 2 2980 3433 635220432 635220885 8.580000e-148 534.0
26 TraesCS1A01G077800 chr3B 84.459 296 45 1 1579 1874 635218373 635218667 2.050000e-74 291.0
27 TraesCS1A01G077800 chr3B 87.047 193 25 0 1172 1364 635217462 635217654 9.820000e-53 219.0
28 TraesCS1A01G077800 chr3B 80.435 184 32 4 4461 4642 635222656 635222837 2.830000e-28 137.0
29 TraesCS1A01G077800 chr3B 91.011 89 8 0 1 89 409279485 409279573 2.850000e-23 121.0
30 TraesCS1A01G077800 chr3A 90.863 591 43 2 1 581 597968460 597967871 0.000000e+00 782.0
31 TraesCS1A01G077800 chr3A 90.349 601 46 3 1 591 712722673 712722075 0.000000e+00 778.0
32 TraesCS1A01G077800 chr3A 89.850 601 48 4 1 591 688890405 688889808 0.000000e+00 760.0
33 TraesCS1A01G077800 chr3A 87.692 455 54 2 2983 3436 620218450 620217997 3.990000e-146 529.0
34 TraesCS1A01G077800 chr3A 87.063 286 37 0 1582 1867 620220601 620220316 2.020000e-84 324.0
35 TraesCS1A01G077800 chr3A 87.047 193 25 0 1172 1364 620221447 620221255 9.820000e-53 219.0
36 TraesCS1A01G077800 chr3A 77.578 223 41 8 4461 4681 620216523 620216308 6.120000e-25 126.0
37 TraesCS1A01G077800 chr3A 84.746 118 16 2 1464 1580 620220796 620220680 3.680000e-22 117.0
38 TraesCS1A01G077800 chr3A 100.000 29 0 0 5710 5738 684637528 684637500 3.000000e-03 54.7
39 TraesCS1A01G077800 chr5B 90.183 601 45 5 2 591 550170214 550169617 0.000000e+00 771.0
40 TraesCS1A01G077800 chr5A 90.017 601 49 2 1 591 143593523 143592924 0.000000e+00 767.0
41 TraesCS1A01G077800 chr7B 89.799 598 48 4 1 588 615685527 615686121 0.000000e+00 754.0
42 TraesCS1A01G077800 chr4A 91.002 489 38 6 2968 3454 67892536 67892052 0.000000e+00 654.0
43 TraesCS1A01G077800 chr4A 86.765 408 50 4 1461 1866 500901214 500901619 8.890000e-123 451.0
44 TraesCS1A01G077800 chr4A 82.486 177 31 0 4466 4642 500902186 500902362 7.810000e-34 156.0
45 TraesCS1A01G077800 chr4A 88.889 117 13 0 1464 1580 67894298 67894182 1.690000e-30 145.0
46 TraesCS1A01G077800 chr4B 91.097 483 39 4 2974 3454 473569991 473569511 0.000000e+00 651.0
47 TraesCS1A01G077800 chr4B 86.420 405 55 0 1462 1866 124741908 124742312 1.490000e-120 444.0
48 TraesCS1A01G077800 chr4B 82.967 182 29 2 4462 4642 124742869 124743049 4.670000e-36 163.0
49 TraesCS1A01G077800 chr4B 88.889 117 13 0 1464 1580 473571693 473571577 1.690000e-30 145.0
50 TraesCS1A01G077800 chr3D 88.352 455 51 2 2980 3433 476553619 476554072 3.970000e-151 545.0
51 TraesCS1A01G077800 chr3D 86.897 290 38 0 1579 1868 476551515 476551804 5.620000e-85 326.0
52 TraesCS1A01G077800 chr3D 87.047 193 25 0 1172 1364 476550594 476550786 9.820000e-53 219.0
53 TraesCS1A01G077800 chr3D 80.978 184 31 4 4461 4642 476555493 476555674 6.080000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G077800 chr1A 60734130 60739949 5819 False 10748.000 10748 100.00000 1 5820 1 chr1A.!!$F1 5819
1 TraesCS1A01G077800 chr1A 474225441 474226183 742 True 328.500 514 83.97050 2982 4646 2 chr1A.!!$R1 1664
2 TraesCS1A01G077800 chr1B 99750269 99755969 5700 True 1555.125 5768 90.73025 588 5547 4 chr1B.!!$R3 4959
3 TraesCS1A01G077800 chr1B 27082604 27083203 599 True 734.000 734 89.01800 1 591 1 chr1B.!!$R1 590
4 TraesCS1A01G077800 chr1D 62597041 62601763 4722 True 1219.500 2532 92.18480 588 5148 5 chr1D.!!$R2 4560
5 TraesCS1A01G077800 chr1D 62569142 62571252 2110 True 225.000 313 86.47500 5315 5742 2 chr1D.!!$R1 427
6 TraesCS1A01G077800 chr7A 108774541 108775138 597 True 798.000 798 91.01500 1 591 1 chr7A.!!$R1 590
7 TraesCS1A01G077800 chr7A 725726489 725727085 596 False 784.000 784 90.63500 1 588 1 chr7A.!!$F2 587
8 TraesCS1A01G077800 chr7A 50581180 50581775 595 False 761.000 761 89.96700 1 588 1 chr7A.!!$F1 587
9 TraesCS1A01G077800 chr4D 64182195 64182792 597 False 791.000 791 90.83300 1 588 1 chr4D.!!$F1 587
10 TraesCS1A01G077800 chr4D 386435664 386437957 2293 True 407.000 669 90.39900 1464 3454 2 chr4D.!!$R1 1990
11 TraesCS1A01G077800 chr4D 88122199 88123340 1141 False 300.500 440 84.69350 1461 4642 2 chr4D.!!$F2 3181
12 TraesCS1A01G077800 chr3B 552473903 552474502 599 True 784.000 784 90.53200 1 591 1 chr3B.!!$R1 590
13 TraesCS1A01G077800 chr3B 635217462 635222837 5375 False 295.250 534 84.96325 1172 4642 4 chr3B.!!$F2 3470
14 TraesCS1A01G077800 chr3A 597967871 597968460 589 True 782.000 782 90.86300 1 581 1 chr3A.!!$R1 580
15 TraesCS1A01G077800 chr3A 712722075 712722673 598 True 778.000 778 90.34900 1 591 1 chr3A.!!$R4 590
16 TraesCS1A01G077800 chr3A 688889808 688890405 597 True 760.000 760 89.85000 1 591 1 chr3A.!!$R3 590
17 TraesCS1A01G077800 chr3A 620216308 620221447 5139 True 263.000 529 84.82520 1172 4681 5 chr3A.!!$R5 3509
18 TraesCS1A01G077800 chr5B 550169617 550170214 597 True 771.000 771 90.18300 2 591 1 chr5B.!!$R1 589
19 TraesCS1A01G077800 chr5A 143592924 143593523 599 True 767.000 767 90.01700 1 591 1 chr5A.!!$R1 590
20 TraesCS1A01G077800 chr7B 615685527 615686121 594 False 754.000 754 89.79900 1 588 1 chr7B.!!$F1 587
21 TraesCS1A01G077800 chr4A 67892052 67894298 2246 True 399.500 654 89.94550 1464 3454 2 chr4A.!!$R1 1990
22 TraesCS1A01G077800 chr4A 500901214 500902362 1148 False 303.500 451 84.62550 1461 4642 2 chr4A.!!$F1 3181
23 TraesCS1A01G077800 chr4B 473569511 473571693 2182 True 398.000 651 89.99300 1464 3454 2 chr4B.!!$R1 1990
24 TraesCS1A01G077800 chr4B 124741908 124743049 1141 False 303.500 444 84.69350 1462 4642 2 chr4B.!!$F1 3180
25 TraesCS1A01G077800 chr3D 476550594 476555674 5080 False 308.250 545 85.81850 1172 4642 4 chr3D.!!$F1 3470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 208 0.030297 AGATCCTCATCCCACTGGCT 60.030 55.0 0.0 0.0 0.0 4.75 F
1393 1459 0.257039 CCCTCCTCCCTCCATTGTTG 59.743 60.0 0.0 0.0 0.0 3.33 F
2621 4070 0.034670 CTTTGAAGCCTCCCTCCCTG 60.035 60.0 0.0 0.0 0.0 4.45 F
3796 7232 0.030773 TCGTCGCTGCCAGATATGTC 59.969 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 1772 0.098200 CTCGAACCACTGCATGCATG 59.902 55.0 22.97 22.70 0.0 4.06 R
2729 5839 0.032267 GACCCGCCTAGCTGATGTAC 59.968 60.0 0.00 0.00 0.0 2.90 R
4092 7542 0.039165 CTTTCCCCTCAACTTTGCGC 60.039 55.0 0.00 0.00 0.0 6.09 R
5748 12913 0.033090 CGGATAACCCTAGGCGAACC 59.967 60.0 2.05 1.87 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 109 2.825836 GCCTGATCCCAAGCCACG 60.826 66.667 0.00 0.00 0.00 4.94
118 130 2.663602 CGAAGTCTTCCGTCAAGTGATG 59.336 50.000 7.01 0.00 33.27 3.07
174 186 3.919216 ACAGGAGAGAAAACATCACGAG 58.081 45.455 0.00 0.00 0.00 4.18
196 208 0.030297 AGATCCTCATCCCACTGGCT 60.030 55.000 0.00 0.00 0.00 4.75
259 271 4.704540 TGTTGCACCCCTATTTGTGATTAG 59.295 41.667 0.00 0.00 34.37 1.73
265 277 5.359860 CACCCCTATTTGTGATTAGTTTCCC 59.640 44.000 0.00 0.00 34.37 3.97
294 306 5.077564 CACTTGATGGAATCCATGGATCAT 58.922 41.667 27.45 24.71 45.26 2.45
313 325 5.929697 TCATTGCCAGATATCGATTTGAC 57.070 39.130 1.71 0.00 0.00 3.18
351 364 3.063485 CCAAATGCAACCCCGTTTAAAG 58.937 45.455 0.00 0.00 0.00 1.85
400 415 8.258708 TCTACCAAGTATAAGAAGAGCCTTTTC 58.741 37.037 0.00 0.00 0.00 2.29
402 417 6.881602 ACCAAGTATAAGAAGAGCCTTTTCTG 59.118 38.462 0.00 0.00 35.20 3.02
548 564 4.762251 GTGCAAGTCTCTAAAACCCAATCT 59.238 41.667 0.00 0.00 0.00 2.40
554 570 4.944317 GTCTCTAAAACCCAATCTCCCTTG 59.056 45.833 0.00 0.00 0.00 3.61
566 582 3.409026 TCTCCCTTGCTTCTTCAGAAC 57.591 47.619 0.00 0.00 0.00 3.01
607 623 5.413499 CAAATCATCTTTCATGTGTTCCCC 58.587 41.667 0.00 0.00 0.00 4.81
848 865 4.523558 GCATATATATACGACCTCTCCCCC 59.476 50.000 0.00 0.00 0.00 5.40
973 990 1.202582 CAGTAGTGCTAAGCGACAGGT 59.797 52.381 0.00 0.00 0.00 4.00
975 992 2.683867 AGTAGTGCTAAGCGACAGGTAG 59.316 50.000 0.00 0.00 0.00 3.18
998 1015 1.871772 CCAAGCCAGAGCAACGAAG 59.128 57.895 0.00 0.00 43.56 3.79
1206 1226 2.103143 CTGACGCTGCCCTACTCG 59.897 66.667 0.00 0.00 0.00 4.18
1369 1389 0.729116 CGTCATCCAGGTACGTACGT 59.271 55.000 25.98 25.98 32.16 3.57
1381 1441 2.772691 CGTACGTGCCTCCCTCCTC 61.773 68.421 7.22 0.00 0.00 3.71
1393 1459 0.257039 CCCTCCTCCCTCCATTGTTG 59.743 60.000 0.00 0.00 0.00 3.33
1411 1477 2.698763 GCTGCTGCCTTCCAAGCTC 61.699 63.158 3.85 0.00 0.00 4.09
1412 1478 1.002379 CTGCTGCCTTCCAAGCTCT 60.002 57.895 0.00 0.00 0.00 4.09
1415 1481 0.539051 GCTGCCTTCCAAGCTCTCTA 59.461 55.000 0.00 0.00 0.00 2.43
1417 1483 2.626840 CTGCCTTCCAAGCTCTCTAAC 58.373 52.381 0.00 0.00 0.00 2.34
1419 1485 1.279271 GCCTTCCAAGCTCTCTAACCA 59.721 52.381 0.00 0.00 0.00 3.67
1420 1486 2.092699 GCCTTCCAAGCTCTCTAACCAT 60.093 50.000 0.00 0.00 0.00 3.55
1424 1490 4.755266 TCCAAGCTCTCTAACCATAACC 57.245 45.455 0.00 0.00 0.00 2.85
1429 1745 6.276847 CAAGCTCTCTAACCATAACCAGTAG 58.723 44.000 0.00 0.00 0.00 2.57
1442 1758 1.144913 ACCAGTAGCCACCATTGTTGT 59.855 47.619 0.00 0.00 0.00 3.32
1447 1763 3.758554 AGTAGCCACCATTGTTGTTGATC 59.241 43.478 0.00 0.00 0.00 2.92
1448 1764 2.880443 AGCCACCATTGTTGTTGATCT 58.120 42.857 0.00 0.00 0.00 2.75
1449 1765 3.233507 AGCCACCATTGTTGTTGATCTT 58.766 40.909 0.00 0.00 0.00 2.40
1450 1766 3.006110 AGCCACCATTGTTGTTGATCTTG 59.994 43.478 0.00 0.00 0.00 3.02
1453 1769 4.202243 CCACCATTGTTGTTGATCTTGGTT 60.202 41.667 0.00 0.00 33.88 3.67
1456 1772 4.211794 CCATTGTTGTTGATCTTGGTTTGC 59.788 41.667 0.00 0.00 0.00 3.68
1457 1773 4.462508 TTGTTGTTGATCTTGGTTTGCA 57.537 36.364 0.00 0.00 0.00 4.08
1459 1775 4.370049 TGTTGTTGATCTTGGTTTGCATG 58.630 39.130 0.00 0.00 0.00 4.06
1922 2837 2.669364 CTCACTTTTCACTTGCATGCC 58.331 47.619 16.68 0.00 0.00 4.40
1945 2860 6.567959 CCCTAATCTTTTTCCAAAGCTGATC 58.432 40.000 0.00 0.00 39.56 2.92
1954 2869 7.765695 TTTTCCAAAGCTGATCATCTAGTTT 57.234 32.000 0.00 0.00 0.00 2.66
1955 2870 8.862325 TTTTCCAAAGCTGATCATCTAGTTTA 57.138 30.769 0.00 0.00 0.00 2.01
1957 2872 8.668510 TTCCAAAGCTGATCATCTAGTTTATC 57.331 34.615 0.00 0.00 0.00 1.75
1959 2874 6.146837 CCAAAGCTGATCATCTAGTTTATCCG 59.853 42.308 0.00 0.00 0.00 4.18
1961 2876 6.019779 AGCTGATCATCTAGTTTATCCGTC 57.980 41.667 0.00 0.00 0.00 4.79
1962 2877 4.854291 GCTGATCATCTAGTTTATCCGTCG 59.146 45.833 0.00 0.00 0.00 5.12
1964 2879 6.348295 GCTGATCATCTAGTTTATCCGTCGTA 60.348 42.308 0.00 0.00 0.00 3.43
1965 2880 7.626664 GCTGATCATCTAGTTTATCCGTCGTAT 60.627 40.741 0.00 0.00 0.00 3.06
1966 2881 8.782339 TGATCATCTAGTTTATCCGTCGTATA 57.218 34.615 0.00 0.00 0.00 1.47
1992 2940 2.875933 CAATGTTGTAACGGTCACTGGT 59.124 45.455 0.00 0.00 0.00 4.00
2078 3030 1.678598 CGGGGCCGTCCTGTGTATAA 61.679 60.000 0.00 0.00 37.13 0.98
2086 3038 2.277084 GTCCTGTGTATAAGCAACGGG 58.723 52.381 0.00 0.00 0.00 5.28
2161 3113 5.164233 CGTACATGCAGTATATCCCAAGAG 58.836 45.833 0.00 0.00 34.67 2.85
2209 3161 1.226491 GCACAATGCTCGTGGATGC 60.226 57.895 0.00 0.00 40.96 3.91
2219 3171 2.268920 GTGGATGCTGGAGCGGAA 59.731 61.111 0.00 0.00 45.83 4.30
2426 3778 7.117092 GGTAGTACTACGTATAGCTTGTAGGTC 59.883 44.444 23.40 3.24 39.85 3.85
2443 3795 7.418337 TGTAGGTCTAGCACAAGATTATTCA 57.582 36.000 0.00 0.00 0.00 2.57
2447 3799 8.443953 AGGTCTAGCACAAGATTATTCATTTC 57.556 34.615 0.00 0.00 0.00 2.17
2452 3804 7.609760 AGCACAAGATTATTCATTTCGTACA 57.390 32.000 0.00 0.00 0.00 2.90
2515 3867 2.751259 TCATCAGGCATCTGCAAAGAAC 59.249 45.455 4.33 0.00 44.36 3.01
2534 3893 4.406003 AGAACCACACTGTTTCAGAGTAGT 59.594 41.667 3.70 0.00 33.87 2.73
2572 3960 0.603569 CAAGACTGAGTACCGGTGCT 59.396 55.000 26.32 26.32 33.70 4.40
2618 4067 4.328041 GCTTTGAAGCCTCCCTCC 57.672 61.111 4.38 0.00 46.20 4.30
2619 4068 1.379176 GCTTTGAAGCCTCCCTCCC 60.379 63.158 4.38 0.00 46.20 4.30
2621 4070 0.034670 CTTTGAAGCCTCCCTCCCTG 60.035 60.000 0.00 0.00 0.00 4.45
2622 4071 2.142292 TTTGAAGCCTCCCTCCCTGC 62.142 60.000 0.00 0.00 0.00 4.85
2623 4072 2.690510 GAAGCCTCCCTCCCTGCT 60.691 66.667 0.00 0.00 35.08 4.24
2625 4074 1.854507 AAGCCTCCCTCCCTGCTTT 60.855 57.895 0.00 0.00 40.98 3.51
2728 5838 4.739587 AAACACCATTGCATGCATGATA 57.260 36.364 30.64 16.53 0.00 2.15
2729 5839 4.316205 AACACCATTGCATGCATGATAG 57.684 40.909 30.64 14.15 0.00 2.08
2730 5840 3.293337 ACACCATTGCATGCATGATAGT 58.707 40.909 30.64 14.80 0.00 2.12
2743 5853 4.180057 GCATGATAGTACATCAGCTAGGC 58.820 47.826 0.00 7.77 0.00 3.93
2747 5857 0.397254 AGTACATCAGCTAGGCGGGT 60.397 55.000 0.00 0.00 0.00 5.28
2819 5929 3.483808 TGTTCATGCTACCTTGTCACA 57.516 42.857 0.00 0.00 0.00 3.58
2840 5950 1.076632 AAAGCCCAACCACGTCCAA 60.077 52.632 0.00 0.00 0.00 3.53
2876 5994 1.659211 GCTTTGTTTGTGTCGCGGTAG 60.659 52.381 6.13 0.00 0.00 3.18
2885 6003 0.518636 TGTCGCGGTAGACTGTACAC 59.481 55.000 6.13 0.00 41.47 2.90
2907 6034 2.750166 GCATCGCTAGCTAGTGAGGATA 59.250 50.000 39.02 20.48 44.64 2.59
2920 6047 5.189659 AGTGAGGATAGCACGAATCTTAC 57.810 43.478 0.00 0.00 41.04 2.34
2965 6092 2.210116 GTCTGATCCGTGTTTGTGTGT 58.790 47.619 0.00 0.00 0.00 3.72
2970 6097 0.799393 TCCGTGTTTGTGTGTGTGTG 59.201 50.000 0.00 0.00 0.00 3.82
2971 6098 0.519519 CCGTGTTTGTGTGTGTGTGT 59.480 50.000 0.00 0.00 0.00 3.72
2972 6099 1.601091 CGTGTTTGTGTGTGTGTGTG 58.399 50.000 0.00 0.00 0.00 3.82
2973 6100 1.069568 CGTGTTTGTGTGTGTGTGTGT 60.070 47.619 0.00 0.00 0.00 3.72
2974 6101 2.315011 GTGTTTGTGTGTGTGTGTGTG 58.685 47.619 0.00 0.00 0.00 3.82
2975 6102 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2976 6103 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2977 6104 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2978 6105 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3470 6664 4.386049 GCGAGGTTCGTCATATTATCCTTG 59.614 45.833 0.17 0.00 42.81 3.61
3473 6802 5.930135 AGGTTCGTCATATTATCCTTGCTT 58.070 37.500 0.00 0.00 0.00 3.91
3539 6923 9.199645 ACGAGATATTGATGGATTGATCTAGAT 57.800 33.333 4.47 4.47 0.00 1.98
3609 7007 2.050144 CTACACACCTGGGCTCCATAT 58.950 52.381 0.00 0.00 30.82 1.78
3612 7010 0.990282 ACACCTGGGCTCCATATGCT 60.990 55.000 0.00 0.00 30.82 3.79
3623 7023 3.065655 CTCCATATGCTTACAGCTGCTC 58.934 50.000 15.27 0.62 42.97 4.26
3655 7055 0.249657 AGCTAGCTAGTCGCCATTGC 60.250 55.000 17.69 5.22 40.39 3.56
3680 7085 5.127682 TGCAGATGATGTAGTACATGTCTGT 59.872 40.000 31.53 12.11 43.11 3.41
3747 7153 2.613977 GGGAACATGACCTGTCACTCAG 60.614 54.545 0.00 0.00 43.11 3.35
3783 7215 2.099062 CAATTGCTGGCTCGTCGC 59.901 61.111 0.00 0.00 38.13 5.19
3796 7232 0.030773 TCGTCGCTGCCAGATATGTC 59.969 55.000 0.00 0.00 0.00 3.06
3798 7234 1.266989 CGTCGCTGCCAGATATGTCTA 59.733 52.381 0.00 0.00 32.09 2.59
3803 7239 3.730362 CGCTGCCAGATATGTCTATCGAG 60.730 52.174 0.00 0.00 39.04 4.04
3833 7269 4.405358 ACTGGTGACACAAAAACATTCCAT 59.595 37.500 8.08 0.00 35.60 3.41
4092 7542 1.067565 ACTCACCATCGTGCACAGTAG 60.068 52.381 18.64 5.00 40.04 2.57
4105 7555 1.195448 CACAGTAGCGCAAAGTTGAGG 59.805 52.381 11.47 0.00 0.00 3.86
4226 8729 1.134818 TCTGCGCATAATTCTGTCCGT 60.135 47.619 12.24 0.00 0.00 4.69
4227 8730 1.258982 CTGCGCATAATTCTGTCCGTC 59.741 52.381 12.24 0.00 0.00 4.79
4228 8731 0.582005 GCGCATAATTCTGTCCGTCC 59.418 55.000 0.30 0.00 0.00 4.79
4229 8732 0.852777 CGCATAATTCTGTCCGTCCG 59.147 55.000 0.00 0.00 0.00 4.79
4245 8862 4.758251 CGGACACTGATGCCGCCA 62.758 66.667 0.00 0.00 38.22 5.69
4313 8956 3.058160 CACTTGAGCGCTTGGGGG 61.058 66.667 13.26 1.23 0.00 5.40
4339 8982 3.519973 CTGTCAGCTCCACGCACCA 62.520 63.158 0.00 0.00 42.61 4.17
4379 9022 5.238432 TGTGACATCATTATTACCGCCATTC 59.762 40.000 0.00 0.00 0.00 2.67
4405 9048 0.887247 TCCCATGCCGTTTTGTCATG 59.113 50.000 0.00 0.00 37.81 3.07
4410 9053 3.906998 CATGCCGTTTTGTCATGGTAAA 58.093 40.909 0.00 0.00 35.27 2.01
4411 9054 4.493547 CATGCCGTTTTGTCATGGTAAAT 58.506 39.130 0.00 0.00 35.27 1.40
4412 9055 5.645624 CATGCCGTTTTGTCATGGTAAATA 58.354 37.500 0.00 0.00 35.27 1.40
4414 9057 4.519350 TGCCGTTTTGTCATGGTAAATACA 59.481 37.500 0.00 0.00 0.00 2.29
4415 9058 5.092781 GCCGTTTTGTCATGGTAAATACAG 58.907 41.667 0.00 0.00 0.00 2.74
4417 9060 6.128227 GCCGTTTTGTCATGGTAAATACAGTA 60.128 38.462 0.00 0.00 0.00 2.74
4418 9061 7.238571 CCGTTTTGTCATGGTAAATACAGTAC 58.761 38.462 0.00 0.00 0.00 2.73
4420 9063 9.142515 CGTTTTGTCATGGTAAATACAGTACTA 57.857 33.333 0.00 0.00 0.00 1.82
4453 9147 1.066858 GTTTCTCTGACGAGGGATGCA 60.067 52.381 0.00 0.00 37.86 3.96
4829 9557 0.803768 CGGTCTGTGATCGCAAGGAG 60.804 60.000 10.71 0.00 38.47 3.69
4851 9579 2.582226 GACGCGCACGATGGATGA 60.582 61.111 5.73 0.00 43.93 2.92
4857 9585 1.422388 CGCACGATGGATGATTCGAT 58.578 50.000 0.00 0.00 38.67 3.59
4913 9644 5.420409 AGCTAGTTAATCAGCAGTGTTACC 58.580 41.667 12.24 0.00 40.36 2.85
5027 9767 2.851102 AGGCTGCCCTCTGTGTGT 60.851 61.111 16.57 0.00 36.46 3.72
5028 9768 2.670934 GGCTGCCCTCTGTGTGTG 60.671 66.667 7.66 0.00 0.00 3.82
5029 9769 2.111878 GCTGCCCTCTGTGTGTGT 59.888 61.111 0.00 0.00 0.00 3.72
5030 9770 1.371183 GCTGCCCTCTGTGTGTGTA 59.629 57.895 0.00 0.00 0.00 2.90
5031 9771 0.036010 GCTGCCCTCTGTGTGTGTAT 60.036 55.000 0.00 0.00 0.00 2.29
5032 9772 1.730501 CTGCCCTCTGTGTGTGTATG 58.269 55.000 0.00 0.00 0.00 2.39
5033 9773 1.002430 CTGCCCTCTGTGTGTGTATGT 59.998 52.381 0.00 0.00 0.00 2.29
5034 9774 1.270785 TGCCCTCTGTGTGTGTATGTG 60.271 52.381 0.00 0.00 0.00 3.21
5035 9775 1.270839 GCCCTCTGTGTGTGTATGTGT 60.271 52.381 0.00 0.00 0.00 3.72
5036 9776 2.416747 CCCTCTGTGTGTGTATGTGTG 58.583 52.381 0.00 0.00 0.00 3.82
5037 9777 2.224281 CCCTCTGTGTGTGTATGTGTGT 60.224 50.000 0.00 0.00 0.00 3.72
5038 9778 3.006430 CCCTCTGTGTGTGTATGTGTGTA 59.994 47.826 0.00 0.00 0.00 2.90
5080 9821 6.003950 CAGAAAGAAGAATGTAACCCCAAGA 58.996 40.000 0.00 0.00 0.00 3.02
5102 9843 1.227615 GAGATGCTCCTGCTCCTGC 60.228 63.158 0.00 0.00 40.48 4.85
5103 9844 1.688269 GAGATGCTCCTGCTCCTGCT 61.688 60.000 0.00 0.00 40.48 4.24
5104 9845 1.227615 GATGCTCCTGCTCCTGCTC 60.228 63.158 0.00 0.00 40.48 4.26
5105 9846 2.663423 GATGCTCCTGCTCCTGCTCC 62.663 65.000 0.00 0.00 40.48 4.70
5106 9847 3.082701 GCTCCTGCTCCTGCTCCT 61.083 66.667 0.00 0.00 40.48 3.69
5107 9848 2.901813 CTCCTGCTCCTGCTCCTG 59.098 66.667 0.00 0.00 40.48 3.86
5138 9879 9.567848 TTTTTCTCAATAATAAATTCACGCCTC 57.432 29.630 0.00 0.00 0.00 4.70
5148 9889 1.826340 TTCACGCCTCTTGCTGCCTA 61.826 55.000 0.00 0.00 38.05 3.93
5150 9891 1.144936 ACGCCTCTTGCTGCCTATC 59.855 57.895 0.00 0.00 38.05 2.08
5151 9892 1.144716 CGCCTCTTGCTGCCTATCA 59.855 57.895 0.00 0.00 38.05 2.15
5152 9893 0.462581 CGCCTCTTGCTGCCTATCAA 60.463 55.000 0.00 0.00 38.05 2.57
5153 9894 1.307097 GCCTCTTGCTGCCTATCAAG 58.693 55.000 0.00 0.00 40.62 3.02
5154 9895 1.964552 CCTCTTGCTGCCTATCAAGG 58.035 55.000 0.00 0.00 46.76 3.61
5158 9899 0.901827 TTGCTGCCTATCAAGGTCGA 59.098 50.000 0.00 0.00 45.64 4.20
5170 9950 4.759516 TCAAGGTCGATTTTAAAGTGCC 57.240 40.909 0.00 0.00 0.00 5.01
5186 9966 0.109532 TGCCGTTGTTCTTGGATGGA 59.890 50.000 0.00 0.00 0.00 3.41
5206 9986 7.173735 GGATGGATTTTTGCTGAATGAAAAAGT 59.826 33.333 0.00 0.00 34.87 2.66
5233 10013 1.081376 CGACAGTATCCGGCCGATC 60.081 63.158 30.73 13.54 31.92 3.69
5240 10020 0.391597 TATCCGGCCGATCTTTGGAC 59.608 55.000 30.73 0.00 31.92 4.02
5256 10044 1.967319 GGACGCATCCAACCATGTAT 58.033 50.000 0.00 0.00 45.47 2.29
5257 10045 1.603802 GGACGCATCCAACCATGTATG 59.396 52.381 0.00 0.00 45.47 2.39
5258 10046 2.560504 GACGCATCCAACCATGTATGA 58.439 47.619 0.00 0.00 0.00 2.15
5259 10047 2.287915 GACGCATCCAACCATGTATGAC 59.712 50.000 0.00 0.00 0.00 3.06
5260 10048 2.287769 CGCATCCAACCATGTATGACA 58.712 47.619 0.00 0.00 0.00 3.58
5295 10083 1.169577 CTCGTATAGCCGCTGGATCT 58.830 55.000 2.16 0.00 0.00 2.75
5296 10084 2.357075 CTCGTATAGCCGCTGGATCTA 58.643 52.381 2.16 0.00 0.00 1.98
5297 10085 2.747989 CTCGTATAGCCGCTGGATCTAA 59.252 50.000 2.16 0.00 0.00 2.10
5298 10086 2.747989 TCGTATAGCCGCTGGATCTAAG 59.252 50.000 2.16 0.00 0.00 2.18
5299 10087 2.488545 CGTATAGCCGCTGGATCTAAGT 59.511 50.000 2.16 0.00 0.00 2.24
5300 10088 3.670895 CGTATAGCCGCTGGATCTAAGTG 60.671 52.174 2.16 0.00 0.00 3.16
5301 10089 1.776662 TAGCCGCTGGATCTAAGTGT 58.223 50.000 2.16 0.00 0.00 3.55
5302 10090 0.461961 AGCCGCTGGATCTAAGTGTC 59.538 55.000 0.00 0.00 0.00 3.67
5307 10095 2.792890 CGCTGGATCTAAGTGTCGTCTG 60.793 54.545 0.00 0.00 0.00 3.51
5308 10096 2.423892 GCTGGATCTAAGTGTCGTCTGA 59.576 50.000 0.00 0.00 0.00 3.27
5309 10097 3.119459 GCTGGATCTAAGTGTCGTCTGAA 60.119 47.826 0.00 0.00 0.00 3.02
5310 10098 4.618460 GCTGGATCTAAGTGTCGTCTGAAA 60.618 45.833 0.00 0.00 0.00 2.69
5311 10099 5.462530 TGGATCTAAGTGTCGTCTGAAAA 57.537 39.130 0.00 0.00 0.00 2.29
5312 10100 5.849510 TGGATCTAAGTGTCGTCTGAAAAA 58.150 37.500 0.00 0.00 0.00 1.94
5313 10101 5.926542 TGGATCTAAGTGTCGTCTGAAAAAG 59.073 40.000 0.00 0.00 0.00 2.27
5327 10115 6.218746 GTCTGAAAAAGTGAAAATCAGCCAT 58.781 36.000 0.00 0.00 37.89 4.40
5340 10128 3.286329 TCAGCCATCATAATGTGTGCT 57.714 42.857 0.00 0.00 0.00 4.40
5346 10134 3.250280 CCATCATAATGTGTGCTCAGAGC 59.750 47.826 16.21 16.21 42.82 4.09
5370 10158 4.803613 AGTTTCGAATGAAAAACACAAGCC 59.196 37.500 0.00 0.00 45.22 4.35
5372 10160 4.582701 TCGAATGAAAAACACAAGCCAT 57.417 36.364 0.00 0.00 0.00 4.40
5375 10163 4.925054 CGAATGAAAAACACAAGCCATCAT 59.075 37.500 0.00 0.00 0.00 2.45
5378 10166 7.276218 CGAATGAAAAACACAAGCCATCATAAT 59.724 33.333 0.00 0.00 0.00 1.28
5379 10167 7.837202 ATGAAAAACACAAGCCATCATAATG 57.163 32.000 0.00 0.00 0.00 1.90
5380 10168 6.757237 TGAAAAACACAAGCCATCATAATGT 58.243 32.000 0.00 0.00 0.00 2.71
5381 10169 6.645827 TGAAAAACACAAGCCATCATAATGTG 59.354 34.615 2.90 2.90 45.18 3.21
5386 10174 0.664761 AGCCATCATAATGTGTGCGC 59.335 50.000 0.00 0.00 0.00 6.09
5406 10871 1.591594 CAACAGGCTCGTGTCGTGT 60.592 57.895 0.00 2.85 34.47 4.49
5507 10972 4.024048 GTGTCCAGTGTAATCCAGTTTGTG 60.024 45.833 0.00 0.00 0.00 3.33
5517 12682 3.057969 TCCAGTTTGTGACATGGCTAG 57.942 47.619 0.00 0.00 32.63 3.42
5530 12695 1.079336 GGCTAGGTCCACGTGGTTC 60.079 63.158 32.74 24.84 36.34 3.62
5538 12703 0.542333 TCCACGTGGTTCCACTTTGA 59.458 50.000 32.74 7.88 35.03 2.69
5541 12706 2.482721 CCACGTGGTTCCACTTTGATAC 59.517 50.000 26.95 0.00 35.03 2.24
5550 12715 2.104111 TCCACTTTGATACGCCTATGGG 59.896 50.000 0.00 0.00 0.00 4.00
5564 12729 3.005554 CCTATGGGCATTCTTATCAGCG 58.994 50.000 0.00 0.00 0.00 5.18
5596 12761 3.055094 ACGGTTTTCATCCTAGACATGCT 60.055 43.478 0.00 0.00 0.00 3.79
5632 12797 5.798125 TGACATTTGCTTTGGGTAATCAA 57.202 34.783 0.00 0.00 0.00 2.57
5639 12804 3.577848 TGCTTTGGGTAATCAAGCACAAT 59.422 39.130 1.71 0.00 31.27 2.71
5651 12816 7.878477 AATCAAGCACAATTGTCAATGTAAG 57.122 32.000 8.48 0.00 0.00 2.34
5687 12852 1.803555 TGTATGACAACGTCGACGGTA 59.196 47.619 37.89 20.75 44.95 4.02
5706 12871 3.368531 GGTAGGTGAGTGATGTTGAGGTC 60.369 52.174 0.00 0.00 0.00 3.85
5710 12875 3.557898 GGTGAGTGATGTTGAGGTCACAT 60.558 47.826 8.06 0.00 45.47 3.21
5711 12876 4.322725 GGTGAGTGATGTTGAGGTCACATA 60.323 45.833 8.06 0.00 45.47 2.29
5733 12898 1.080025 GTTGCGGTAGTCGGCTCTT 60.080 57.895 0.00 0.00 39.97 2.85
5742 12907 1.333177 AGTCGGCTCTTCTTCTGTGT 58.667 50.000 0.00 0.00 0.00 3.72
5743 12908 1.271102 AGTCGGCTCTTCTTCTGTGTC 59.729 52.381 0.00 0.00 0.00 3.67
5744 12909 0.603569 TCGGCTCTTCTTCTGTGTCC 59.396 55.000 0.00 0.00 0.00 4.02
5745 12910 0.318441 CGGCTCTTCTTCTGTGTCCA 59.682 55.000 0.00 0.00 0.00 4.02
5746 12911 1.066573 CGGCTCTTCTTCTGTGTCCAT 60.067 52.381 0.00 0.00 0.00 3.41
5747 12912 2.166459 CGGCTCTTCTTCTGTGTCCATA 59.834 50.000 0.00 0.00 0.00 2.74
5748 12913 3.736433 CGGCTCTTCTTCTGTGTCCATAG 60.736 52.174 0.00 0.00 0.00 2.23
5749 12914 3.431486 GGCTCTTCTTCTGTGTCCATAGG 60.431 52.174 0.00 0.00 0.00 2.57
5750 12915 3.196685 GCTCTTCTTCTGTGTCCATAGGT 59.803 47.826 0.00 0.00 0.00 3.08
5751 12916 4.323104 GCTCTTCTTCTGTGTCCATAGGTT 60.323 45.833 0.00 0.00 0.00 3.50
5752 12917 5.407407 TCTTCTTCTGTGTCCATAGGTTC 57.593 43.478 0.00 0.00 0.00 3.62
5753 12918 3.868757 TCTTCTGTGTCCATAGGTTCG 57.131 47.619 0.00 0.00 0.00 3.95
5754 12919 2.094182 TCTTCTGTGTCCATAGGTTCGC 60.094 50.000 0.00 0.00 0.00 4.70
5755 12920 0.535335 TCTGTGTCCATAGGTTCGCC 59.465 55.000 0.00 0.00 37.60 5.54
5767 12932 0.033090 GGTTCGCCTAGGGTTATCCG 59.967 60.000 11.72 4.28 41.52 4.18
5768 12933 0.749049 GTTCGCCTAGGGTTATCCGT 59.251 55.000 11.72 0.00 41.52 4.69
5769 12934 1.137675 GTTCGCCTAGGGTTATCCGTT 59.862 52.381 11.72 0.00 41.52 4.44
5770 12935 0.748450 TCGCCTAGGGTTATCCGTTG 59.252 55.000 11.72 0.00 41.52 4.10
5771 12936 0.249741 CGCCTAGGGTTATCCGTTGG 60.250 60.000 11.72 8.21 43.62 3.77
5772 12937 0.835276 GCCTAGGGTTATCCGTTGGT 59.165 55.000 11.72 0.00 43.05 3.67
5773 12938 1.474498 GCCTAGGGTTATCCGTTGGTG 60.474 57.143 11.72 0.00 43.05 4.17
5774 12939 1.474498 CCTAGGGTTATCCGTTGGTGC 60.474 57.143 0.00 0.00 38.82 5.01
5775 12940 1.208535 CTAGGGTTATCCGTTGGTGCA 59.791 52.381 0.00 0.00 41.52 4.57
5776 12941 0.402504 AGGGTTATCCGTTGGTGCAA 59.597 50.000 0.00 0.00 41.52 4.08
5777 12942 1.202952 AGGGTTATCCGTTGGTGCAAA 60.203 47.619 0.00 0.00 41.52 3.68
5778 12943 1.201414 GGGTTATCCGTTGGTGCAAAG 59.799 52.381 0.00 0.00 33.83 2.77
5779 12944 1.883926 GGTTATCCGTTGGTGCAAAGT 59.116 47.619 0.00 0.00 0.00 2.66
5780 12945 2.095415 GGTTATCCGTTGGTGCAAAGTC 60.095 50.000 0.00 0.00 0.00 3.01
5781 12946 1.434555 TATCCGTTGGTGCAAAGTCG 58.565 50.000 0.00 0.00 0.00 4.18
5782 12947 0.250124 ATCCGTTGGTGCAAAGTCGA 60.250 50.000 0.00 0.00 0.00 4.20
5783 12948 0.462225 TCCGTTGGTGCAAAGTCGAA 60.462 50.000 0.00 0.00 0.00 3.71
5784 12949 0.041312 CCGTTGGTGCAAAGTCGAAG 60.041 55.000 0.00 0.00 0.00 3.79
5785 12950 0.657368 CGTTGGTGCAAAGTCGAAGC 60.657 55.000 0.00 0.00 0.00 3.86
5786 12951 0.317854 GTTGGTGCAAAGTCGAAGCC 60.318 55.000 0.00 0.00 0.00 4.35
5787 12952 0.749818 TTGGTGCAAAGTCGAAGCCA 60.750 50.000 0.00 0.00 0.00 4.75
5788 12953 1.282875 GGTGCAAAGTCGAAGCCAC 59.717 57.895 0.00 0.00 0.00 5.01
5789 12954 1.444119 GGTGCAAAGTCGAAGCCACA 61.444 55.000 0.00 0.00 0.00 4.17
5790 12955 0.380378 GTGCAAAGTCGAAGCCACAA 59.620 50.000 0.00 0.00 0.00 3.33
5791 12956 0.380378 TGCAAAGTCGAAGCCACAAC 59.620 50.000 0.00 0.00 0.00 3.32
5792 12957 0.657368 GCAAAGTCGAAGCCACAACG 60.657 55.000 0.00 0.00 0.00 4.10
5793 12958 0.041312 CAAAGTCGAAGCCACAACGG 60.041 55.000 0.00 0.00 38.11 4.44
5815 12980 4.402528 CCCGGGTGGCAACGATGA 62.403 66.667 14.18 0.00 42.51 2.92
5816 12981 3.124921 CCGGGTGGCAACGATGAC 61.125 66.667 13.56 0.00 42.51 3.06
5817 12982 3.487202 CGGGTGGCAACGATGACG 61.487 66.667 6.99 0.00 37.40 4.35
5818 12983 2.047655 GGGTGGCAACGATGACGA 60.048 61.111 0.00 0.00 37.40 4.20
5819 12984 2.100631 GGGTGGCAACGATGACGAG 61.101 63.158 0.00 0.00 37.40 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.473444 AGGAGTTTGAACATCAACATGGT 58.527 39.130 0.00 0.00 35.89 3.55
98 109 2.996621 CCATCACTTGACGGAAGACTTC 59.003 50.000 6.66 6.66 35.42 3.01
118 130 7.898014 AGGATATTACAAATCCCTTTGAACC 57.102 36.000 5.17 0.00 43.71 3.62
174 186 2.224402 GCCAGTGGGATGAGGATCTAAC 60.224 54.545 12.15 0.00 35.59 2.34
196 208 7.160049 TGATGAGTTAATAAACCCGTACACAA 58.840 34.615 0.00 0.00 36.15 3.33
251 263 4.102524 AGTGTCACAGGGAAACTAATCACA 59.897 41.667 5.62 0.00 42.49 3.58
259 271 2.554032 CCATCAAGTGTCACAGGGAAAC 59.446 50.000 5.62 0.00 33.58 2.78
265 277 3.678289 TGGATTCCATCAAGTGTCACAG 58.322 45.455 0.00 0.00 0.00 3.66
294 306 4.380531 GAGGTCAAATCGATATCTGGCAA 58.619 43.478 0.00 0.00 0.00 4.52
313 325 1.966451 GGCGTGTTGGAAGTGGAGG 60.966 63.158 0.00 0.00 0.00 4.30
351 364 5.186198 AGTATTGTTGCAGGTATTCAGACC 58.814 41.667 0.00 0.00 40.08 3.85
402 417 4.142600 GGTGACATATTGAAAGCTGGACAC 60.143 45.833 0.00 0.00 0.00 3.67
548 564 1.878102 GCGTTCTGAAGAAGCAAGGGA 60.878 52.381 7.33 0.00 34.27 4.20
554 570 1.334149 GGTTGTGCGTTCTGAAGAAGC 60.334 52.381 0.00 0.00 34.27 3.86
566 582 3.345808 CGTGGTGGAGGTTGTGCG 61.346 66.667 0.00 0.00 0.00 5.34
862 879 1.065418 GGTGACTGGTGATAGGTTGGG 60.065 57.143 0.00 0.00 0.00 4.12
973 990 1.194121 TGCTCTGGCTTGGCTCACTA 61.194 55.000 0.00 0.00 39.59 2.74
975 992 1.601759 TTGCTCTGGCTTGGCTCAC 60.602 57.895 0.00 0.00 39.59 3.51
1369 1389 4.095400 GGAGGGAGGAGGGAGGCA 62.095 72.222 0.00 0.00 0.00 4.75
1381 1441 1.888018 CAGCAGCAACAATGGAGGG 59.112 57.895 0.00 0.00 0.00 4.30
1393 1459 2.675772 AGCTTGGAAGGCAGCAGC 60.676 61.111 0.00 0.00 38.61 5.25
1411 1477 4.443034 GGTGGCTACTGGTTATGGTTAGAG 60.443 50.000 0.00 0.00 0.00 2.43
1412 1478 3.453353 GGTGGCTACTGGTTATGGTTAGA 59.547 47.826 0.00 0.00 0.00 2.10
1415 1481 1.989586 TGGTGGCTACTGGTTATGGTT 59.010 47.619 0.00 0.00 0.00 3.67
1417 1483 2.951642 CAATGGTGGCTACTGGTTATGG 59.048 50.000 0.00 0.00 0.00 2.74
1419 1485 4.016444 CAACAATGGTGGCTACTGGTTAT 58.984 43.478 0.00 0.00 0.00 1.89
1420 1486 3.181438 ACAACAATGGTGGCTACTGGTTA 60.181 43.478 2.39 0.00 0.00 2.85
1424 1490 2.884012 TCAACAACAATGGTGGCTACTG 59.116 45.455 2.39 0.00 44.73 2.74
1429 1745 3.319755 CAAGATCAACAACAATGGTGGC 58.680 45.455 2.39 0.00 44.73 5.01
1442 1758 3.591023 CATGCATGCAAACCAAGATCAA 58.409 40.909 26.68 0.00 0.00 2.57
1456 1772 0.098200 CTCGAACCACTGCATGCATG 59.902 55.000 22.97 22.70 0.00 4.06
1457 1773 1.028330 CCTCGAACCACTGCATGCAT 61.028 55.000 22.97 5.46 0.00 3.96
1459 1775 1.672356 ACCTCGAACCACTGCATGC 60.672 57.895 11.82 11.82 0.00 4.06
1514 1960 2.677875 CAGTTGAAGGCCAGCCCC 60.678 66.667 5.01 0.00 36.58 5.80
1577 2023 4.392754 TCGTTCACGTAGTAGATGTTGCTA 59.607 41.667 0.00 0.00 41.61 3.49
1899 2814 3.305964 CATGCAAGTGAAAAGTGAGCAG 58.694 45.455 0.00 0.00 33.69 4.24
1922 2837 7.161773 TGATCAGCTTTGGAAAAAGATTAGG 57.838 36.000 2.46 0.00 31.58 2.69
1957 2872 8.569683 CGTTACAACATTGTATATATACGACGG 58.430 37.037 13.97 11.81 41.60 4.79
1959 2874 9.398170 ACCGTTACAACATTGTATATATACGAC 57.602 33.333 19.80 7.71 41.60 4.34
1961 2876 9.396938 TGACCGTTACAACATTGTATATATACG 57.603 33.333 16.29 14.57 42.66 3.06
1964 2879 9.256477 CAGTGACCGTTACAACATTGTATATAT 57.744 33.333 5.34 0.00 42.66 0.86
1965 2880 7.707464 CCAGTGACCGTTACAACATTGTATATA 59.293 37.037 5.34 0.00 42.66 0.86
1966 2881 6.537301 CCAGTGACCGTTACAACATTGTATAT 59.463 38.462 5.34 0.00 42.66 0.86
2008 2956 1.736586 CCGAGCTGGGCAGTAGTAG 59.263 63.158 0.21 0.00 0.00 2.57
2009 2957 3.935024 CCGAGCTGGGCAGTAGTA 58.065 61.111 0.21 0.00 0.00 1.82
2073 3025 0.648958 GTGACGCCCGTTGCTTATAC 59.351 55.000 0.00 0.00 38.05 1.47
2078 3030 4.988598 CAGGTGACGCCCGTTGCT 62.989 66.667 0.08 0.00 38.26 3.91
2086 3038 4.699522 GTGGTCCCCAGGTGACGC 62.700 72.222 0.00 0.00 32.34 5.19
2092 3044 1.689582 GGTCTAGGTGGTCCCCAGG 60.690 68.421 0.00 0.00 32.34 4.45
2093 3045 0.635009 TAGGTCTAGGTGGTCCCCAG 59.365 60.000 0.00 0.00 32.34 4.45
2103 3055 1.269309 GCGTGCATGTCTAGGTCTAGG 60.269 57.143 7.93 0.00 34.06 3.02
2209 3161 2.795175 ACGTATATGTTCCGCTCCAG 57.205 50.000 0.00 0.00 0.00 3.86
2346 3658 4.065088 TCTTGTGCTAAACCTACAAGCTG 58.935 43.478 10.55 0.00 46.63 4.24
2426 3778 8.817100 TGTACGAAATGAATAATCTTGTGCTAG 58.183 33.333 0.00 0.00 0.00 3.42
2443 3795 6.601741 TGGTACGAAAAAGTTGTACGAAAT 57.398 33.333 0.00 0.00 39.42 2.17
2447 3799 3.245754 TGCTGGTACGAAAAAGTTGTACG 59.754 43.478 0.00 0.00 39.42 3.67
2452 3804 3.275999 ACACTGCTGGTACGAAAAAGTT 58.724 40.909 0.00 0.00 0.00 2.66
2515 3867 2.802816 GCACTACTCTGAAACAGTGTGG 59.197 50.000 14.05 13.47 40.49 4.17
2625 4074 0.533978 TGCGCTAGCTGTGGTGAAAA 60.534 50.000 13.93 0.00 45.42 2.29
2679 4132 4.113354 GTCGAGGGAAAATAGTACTGCTG 58.887 47.826 5.39 0.00 0.00 4.41
2680 4133 3.767673 TGTCGAGGGAAAATAGTACTGCT 59.232 43.478 5.39 0.00 0.00 4.24
2684 4137 7.662604 TTTCTTTGTCGAGGGAAAATAGTAC 57.337 36.000 0.00 0.00 0.00 2.73
2685 4138 7.716123 TGTTTTCTTTGTCGAGGGAAAATAGTA 59.284 33.333 13.74 4.28 39.02 1.82
2686 4139 6.544564 TGTTTTCTTTGTCGAGGGAAAATAGT 59.455 34.615 13.74 0.00 39.02 2.12
2687 4140 6.856426 GTGTTTTCTTTGTCGAGGGAAAATAG 59.144 38.462 13.74 0.00 39.02 1.73
2696 4149 3.730715 GCAATGGTGTTTTCTTTGTCGAG 59.269 43.478 0.00 0.00 0.00 4.04
2728 5838 0.397254 ACCCGCCTAGCTGATGTACT 60.397 55.000 0.00 0.00 0.00 2.73
2729 5839 0.032267 GACCCGCCTAGCTGATGTAC 59.968 60.000 0.00 0.00 0.00 2.90
2730 5840 1.113517 GGACCCGCCTAGCTGATGTA 61.114 60.000 0.00 0.00 0.00 2.29
2819 5929 2.123897 ACGTGGTTGGGCTTTGCT 60.124 55.556 0.00 0.00 0.00 3.91
2840 5950 1.786937 AAGCGAGATGGAGATGGACT 58.213 50.000 0.00 0.00 0.00 3.85
2876 5994 1.467875 CTAGCGATGCGTGTACAGTC 58.532 55.000 0.00 0.00 0.00 3.51
2885 6003 0.386605 CCTCACTAGCTAGCGATGCG 60.387 60.000 20.91 6.75 35.28 4.73
2907 6034 1.350193 CGTGCTGTAAGATTCGTGCT 58.650 50.000 0.00 0.00 34.07 4.40
2920 6047 3.434319 ATTCTTGCCCGCGTGCTG 61.434 61.111 16.01 7.93 0.00 4.41
2965 6092 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
2970 6097 1.439353 CTCCCTGCACACACACACAC 61.439 60.000 0.00 0.00 0.00 3.82
2971 6098 1.153188 CTCCCTGCACACACACACA 60.153 57.895 0.00 0.00 0.00 3.72
2972 6099 1.893808 CCTCCCTGCACACACACAC 60.894 63.158 0.00 0.00 0.00 3.82
2973 6100 2.374525 ACCTCCCTGCACACACACA 61.375 57.895 0.00 0.00 0.00 3.72
2974 6101 1.893808 CACCTCCCTGCACACACAC 60.894 63.158 0.00 0.00 0.00 3.82
2975 6102 1.418097 ATCACCTCCCTGCACACACA 61.418 55.000 0.00 0.00 0.00 3.72
2976 6103 0.957395 CATCACCTCCCTGCACACAC 60.957 60.000 0.00 0.00 0.00 3.82
2977 6104 1.376086 CATCACCTCCCTGCACACA 59.624 57.895 0.00 0.00 0.00 3.72
2978 6105 2.042831 GCATCACCTCCCTGCACAC 61.043 63.158 0.00 0.00 35.96 3.82
3308 6438 1.700042 GCGAGGAACCAGATGGGGAT 61.700 60.000 3.48 0.00 42.91 3.85
3461 6655 5.655532 AGAAAGTGATGCAAGCAAGGATAAT 59.344 36.000 0.00 0.00 28.10 1.28
3463 6657 4.592942 AGAAAGTGATGCAAGCAAGGATA 58.407 39.130 0.00 0.00 28.10 2.59
3464 6658 3.428532 AGAAAGTGATGCAAGCAAGGAT 58.571 40.909 0.00 0.00 28.10 3.24
3539 6923 1.478916 TGTCGATAAATCTCACCGGCA 59.521 47.619 0.00 0.00 32.21 5.69
3655 7055 5.690857 CAGACATGTACTACATCATCTGCAG 59.309 44.000 18.66 7.63 39.75 4.41
3747 7153 3.975168 TGTGAAGGAGGCTAGTTTACC 57.025 47.619 0.00 0.00 0.00 2.85
3749 7155 4.700213 GCAATTGTGAAGGAGGCTAGTTTA 59.300 41.667 7.40 0.00 0.00 2.01
3783 7215 3.192212 TGCTCGATAGACATATCTGGCAG 59.808 47.826 8.58 8.58 42.67 4.85
3786 7218 5.384063 AACTGCTCGATAGACATATCTGG 57.616 43.478 4.07 0.00 42.67 3.86
3788 7220 7.308891 CCAGTTAACTGCTCGATAGACATATCT 60.309 40.741 27.05 0.00 40.88 1.98
3796 7232 4.106197 GTCACCAGTTAACTGCTCGATAG 58.894 47.826 27.05 15.25 42.47 2.08
3798 7234 2.299013 TGTCACCAGTTAACTGCTCGAT 59.701 45.455 27.05 8.93 42.47 3.59
3803 7239 4.364415 TTTTGTGTCACCAGTTAACTGC 57.636 40.909 27.05 15.31 42.47 4.40
3872 7313 6.325545 TCCAACGGAGTGGATTATACTACAAT 59.674 38.462 0.97 0.00 45.00 2.71
3873 7314 5.657745 TCCAACGGAGTGGATTATACTACAA 59.342 40.000 0.97 0.00 45.00 2.41
4092 7542 0.039165 CTTTCCCCTCAACTTTGCGC 60.039 55.000 0.00 0.00 0.00 6.09
4105 7555 1.281656 CGTTTCACCGCACTTTCCC 59.718 57.895 0.00 0.00 0.00 3.97
4226 8729 4.451150 GCGGCATCAGTGTCCGGA 62.451 66.667 0.00 0.00 41.88 5.14
4228 8731 4.758251 TGGCGGCATCAGTGTCCG 62.758 66.667 7.97 13.93 43.33 4.79
4229 8732 2.124570 ATGGCGGCATCAGTGTCC 60.125 61.111 20.18 0.00 0.00 4.02
4235 8738 0.829990 TTCTAGACATGGCGGCATCA 59.170 50.000 23.19 6.70 0.00 3.07
4245 8862 5.766222 CTGCTTTTGTTGCTTTCTAGACAT 58.234 37.500 0.00 0.00 0.00 3.06
4313 8956 2.749441 GAGCTGACAGCCCCAAGC 60.749 66.667 23.74 3.34 43.77 4.01
4314 8957 2.045536 GGAGCTGACAGCCCCAAG 60.046 66.667 22.16 0.00 43.77 3.61
4315 8958 2.853542 TGGAGCTGACAGCCCCAA 60.854 61.111 26.79 11.53 46.61 4.12
4317 8960 4.767255 CGTGGAGCTGACAGCCCC 62.767 72.222 23.74 22.10 43.77 5.80
4339 8982 1.542375 ACAGGTGAAGGGGGCATCT 60.542 57.895 0.00 0.00 0.00 2.90
4379 9022 1.176527 AAACGGCATGGGAATGTGAG 58.823 50.000 0.00 0.00 0.00 3.51
4453 9147 0.318614 CCACCGCGTTCTGCATTTTT 60.319 50.000 4.92 0.00 46.97 1.94
4780 9506 2.978010 CGGTGGTGGTGGTGAAGC 60.978 66.667 0.00 0.00 0.00 3.86
4913 9644 8.664211 AAAAGATTTTACTAGGGCTAATCGAG 57.336 34.615 0.00 0.00 32.05 4.04
4990 9730 0.249073 CGCACTAGCTGCCGACTAAT 60.249 55.000 0.00 0.00 43.84 1.73
5013 9753 1.002430 ACATACACACACAGAGGGCAG 59.998 52.381 0.00 0.00 0.00 4.85
5014 9754 1.055849 ACATACACACACAGAGGGCA 58.944 50.000 0.00 0.00 0.00 5.36
5018 9758 4.627035 CCATACACACATACACACACAGAG 59.373 45.833 0.00 0.00 0.00 3.35
5020 9760 4.565022 TCCATACACACATACACACACAG 58.435 43.478 0.00 0.00 0.00 3.66
5021 9761 4.565022 CTCCATACACACATACACACACA 58.435 43.478 0.00 0.00 0.00 3.72
5022 9762 3.370978 GCTCCATACACACATACACACAC 59.629 47.826 0.00 0.00 0.00 3.82
5024 9764 3.618594 CAGCTCCATACACACATACACAC 59.381 47.826 0.00 0.00 0.00 3.82
5025 9765 3.860641 CAGCTCCATACACACATACACA 58.139 45.455 0.00 0.00 0.00 3.72
5026 9766 2.609459 GCAGCTCCATACACACATACAC 59.391 50.000 0.00 0.00 0.00 2.90
5027 9767 2.501316 AGCAGCTCCATACACACATACA 59.499 45.455 0.00 0.00 0.00 2.29
5028 9768 3.185246 AGCAGCTCCATACACACATAC 57.815 47.619 0.00 0.00 0.00 2.39
5029 9769 3.912496 AAGCAGCTCCATACACACATA 57.088 42.857 0.00 0.00 0.00 2.29
5030 9770 2.795231 AAGCAGCTCCATACACACAT 57.205 45.000 0.00 0.00 0.00 3.21
5031 9771 2.566833 AAAGCAGCTCCATACACACA 57.433 45.000 0.00 0.00 0.00 3.72
5032 9772 2.813754 TGAAAAGCAGCTCCATACACAC 59.186 45.455 0.00 0.00 0.00 3.82
5033 9773 3.076621 CTGAAAAGCAGCTCCATACACA 58.923 45.455 0.00 0.00 37.90 3.72
5034 9774 2.421424 CCTGAAAAGCAGCTCCATACAC 59.579 50.000 0.00 0.00 43.50 2.90
5035 9775 2.715046 CCTGAAAAGCAGCTCCATACA 58.285 47.619 0.00 0.00 43.50 2.29
5036 9776 1.403323 GCCTGAAAAGCAGCTCCATAC 59.597 52.381 0.00 0.00 43.50 2.39
5037 9777 1.004628 TGCCTGAAAAGCAGCTCCATA 59.995 47.619 0.00 0.00 43.50 2.74
5038 9778 0.251474 TGCCTGAAAAGCAGCTCCAT 60.251 50.000 0.00 0.00 43.50 3.41
5102 9843 9.912634 TTTATTATTGAGAAAAACTTGCAGGAG 57.087 29.630 1.40 0.00 0.00 3.69
5138 9879 1.134699 TCGACCTTGATAGGCAGCAAG 60.135 52.381 0.00 7.62 46.22 4.01
5148 9889 4.142687 CGGCACTTTAAAATCGACCTTGAT 60.143 41.667 0.00 0.00 0.00 2.57
5150 9891 3.058501 ACGGCACTTTAAAATCGACCTTG 60.059 43.478 0.00 0.00 0.00 3.61
5151 9892 3.143728 ACGGCACTTTAAAATCGACCTT 58.856 40.909 0.00 0.00 0.00 3.50
5152 9893 2.774687 ACGGCACTTTAAAATCGACCT 58.225 42.857 0.00 0.00 0.00 3.85
5153 9894 3.231160 CAACGGCACTTTAAAATCGACC 58.769 45.455 0.00 0.00 0.00 4.79
5154 9895 3.880610 ACAACGGCACTTTAAAATCGAC 58.119 40.909 0.00 0.00 0.00 4.20
5158 9899 5.047188 CCAAGAACAACGGCACTTTAAAAT 58.953 37.500 0.00 0.00 0.00 1.82
5170 9950 4.150451 GCAAAAATCCATCCAAGAACAACG 59.850 41.667 0.00 0.00 0.00 4.10
5206 9986 3.415212 CCGGATACTGTCGTCCCTATAA 58.585 50.000 0.00 0.00 0.00 0.98
5240 10020 2.287769 TGTCATACATGGTTGGATGCG 58.712 47.619 0.00 0.00 42.99 4.73
5256 10044 0.179076 CGCTGCTCATACCCATGTCA 60.179 55.000 0.00 0.00 33.57 3.58
5257 10045 1.502163 GCGCTGCTCATACCCATGTC 61.502 60.000 0.00 0.00 33.57 3.06
5258 10046 1.524621 GCGCTGCTCATACCCATGT 60.525 57.895 0.00 0.00 33.57 3.21
5259 10047 1.227764 AGCGCTGCTCATACCCATG 60.228 57.895 10.39 0.00 30.62 3.66
5260 10048 3.234349 AGCGCTGCTCATACCCAT 58.766 55.556 10.39 0.00 30.62 4.00
5295 10083 6.971527 TTTCACTTTTTCAGACGACACTTA 57.028 33.333 0.00 0.00 0.00 2.24
5296 10084 5.873179 TTTCACTTTTTCAGACGACACTT 57.127 34.783 0.00 0.00 0.00 3.16
5297 10085 5.873179 TTTTCACTTTTTCAGACGACACT 57.127 34.783 0.00 0.00 0.00 3.55
5298 10086 6.255215 TGATTTTCACTTTTTCAGACGACAC 58.745 36.000 0.00 0.00 0.00 3.67
5299 10087 6.429791 TGATTTTCACTTTTTCAGACGACA 57.570 33.333 0.00 0.00 0.00 4.35
5300 10088 5.396654 GCTGATTTTCACTTTTTCAGACGAC 59.603 40.000 2.60 0.00 36.72 4.34
5301 10089 5.505654 GGCTGATTTTCACTTTTTCAGACGA 60.506 40.000 2.60 0.00 36.72 4.20
5302 10090 4.676924 GGCTGATTTTCACTTTTTCAGACG 59.323 41.667 2.60 0.00 36.72 4.18
5307 10095 8.761575 TTATGATGGCTGATTTTCACTTTTTC 57.238 30.769 0.00 0.00 0.00 2.29
5308 10096 9.158233 CATTATGATGGCTGATTTTCACTTTTT 57.842 29.630 0.00 0.00 0.00 1.94
5309 10097 8.316214 ACATTATGATGGCTGATTTTCACTTTT 58.684 29.630 0.00 0.00 37.60 2.27
5310 10098 7.762615 CACATTATGATGGCTGATTTTCACTTT 59.237 33.333 0.00 0.00 37.60 2.66
5311 10099 7.093640 ACACATTATGATGGCTGATTTTCACTT 60.094 33.333 0.00 0.00 37.60 3.16
5312 10100 6.379133 ACACATTATGATGGCTGATTTTCACT 59.621 34.615 0.00 0.00 37.60 3.41
5313 10101 6.474427 CACACATTATGATGGCTGATTTTCAC 59.526 38.462 0.00 0.00 37.60 3.18
5340 10128 5.065859 TGTTTTTCATTCGAAACTGCTCTGA 59.934 36.000 0.00 0.00 40.84 3.27
5346 10134 5.276348 GGCTTGTGTTTTTCATTCGAAACTG 60.276 40.000 0.00 0.00 40.84 3.16
5380 10168 3.279116 GAGCCTGTTGTGCGCACA 61.279 61.111 37.86 37.86 39.98 4.57
5381 10169 4.374702 CGAGCCTGTTGTGCGCAC 62.375 66.667 33.11 33.11 0.00 5.34
5382 10170 4.908687 ACGAGCCTGTTGTGCGCA 62.909 61.111 5.66 5.66 0.00 6.09
5386 10174 1.591594 ACGACACGAGCCTGTTGTG 60.592 57.895 0.00 0.00 45.28 3.33
5406 10871 7.309377 CCCTAGACTGAAAATTGAAAATGCAGA 60.309 37.037 0.00 0.00 0.00 4.26
5458 10923 0.107017 GGGTGCATGCCTATCACACT 60.107 55.000 16.68 0.00 31.79 3.55
5462 10927 1.152902 GCAGGGTGCATGCCTATCA 60.153 57.895 16.68 0.00 44.26 2.15
5507 10972 4.835927 CGTGGACCTAGCCATGTC 57.164 61.111 0.00 0.00 40.68 3.06
5530 12695 2.494059 CCCATAGGCGTATCAAAGTGG 58.506 52.381 0.00 0.00 0.00 4.00
5564 12729 0.800012 TGAAAACCGTGCCGCTTATC 59.200 50.000 0.00 0.00 0.00 1.75
5572 12737 2.695359 TGTCTAGGATGAAAACCGTGC 58.305 47.619 0.00 0.00 31.66 5.34
5618 12783 3.658757 TTGTGCTTGATTACCCAAAGC 57.341 42.857 0.00 0.00 0.00 3.51
5632 12797 6.016360 TGCTTACTTACATTGACAATTGTGCT 60.016 34.615 17.58 0.00 0.00 4.40
5639 12804 3.749088 CCGGTGCTTACTTACATTGACAA 59.251 43.478 0.00 0.00 0.00 3.18
5651 12816 3.936453 TCATACATTGAACCGGTGCTTAC 59.064 43.478 15.35 1.69 0.00 2.34
5687 12852 2.037772 GTGACCTCAACATCACTCACCT 59.962 50.000 0.00 0.00 41.69 4.00
5706 12871 2.284150 CGACTACCGCAACCATTATGTG 59.716 50.000 0.00 0.00 0.00 3.21
5710 12875 0.460635 GCCGACTACCGCAACCATTA 60.461 55.000 0.00 0.00 36.84 1.90
5711 12876 1.743995 GCCGACTACCGCAACCATT 60.744 57.895 0.00 0.00 36.84 3.16
5733 12898 2.094182 GCGAACCTATGGACACAGAAGA 60.094 50.000 0.00 0.00 0.00 2.87
5748 12913 0.033090 CGGATAACCCTAGGCGAACC 59.967 60.000 2.05 1.87 0.00 3.62
5749 12914 0.749049 ACGGATAACCCTAGGCGAAC 59.251 55.000 2.05 0.00 0.00 3.95
5750 12915 1.137479 CAACGGATAACCCTAGGCGAA 59.863 52.381 2.05 0.00 0.00 4.70
5751 12916 0.748450 CAACGGATAACCCTAGGCGA 59.252 55.000 2.05 0.00 0.00 5.54
5752 12917 0.249741 CCAACGGATAACCCTAGGCG 60.250 60.000 2.05 2.66 0.00 5.52
5753 12918 0.835276 ACCAACGGATAACCCTAGGC 59.165 55.000 2.05 0.00 0.00 3.93
5754 12919 1.474498 GCACCAACGGATAACCCTAGG 60.474 57.143 0.06 0.06 0.00 3.02
5755 12920 1.208535 TGCACCAACGGATAACCCTAG 59.791 52.381 0.00 0.00 0.00 3.02
5756 12921 1.277579 TGCACCAACGGATAACCCTA 58.722 50.000 0.00 0.00 0.00 3.53
5757 12922 0.402504 TTGCACCAACGGATAACCCT 59.597 50.000 0.00 0.00 0.00 4.34
5758 12923 1.201414 CTTTGCACCAACGGATAACCC 59.799 52.381 0.00 0.00 0.00 4.11
5759 12924 1.883926 ACTTTGCACCAACGGATAACC 59.116 47.619 0.00 0.00 0.00 2.85
5760 12925 2.412325 CGACTTTGCACCAACGGATAAC 60.412 50.000 0.00 0.00 0.00 1.89
5761 12926 1.801771 CGACTTTGCACCAACGGATAA 59.198 47.619 0.00 0.00 0.00 1.75
5762 12927 1.001068 TCGACTTTGCACCAACGGATA 59.999 47.619 0.00 0.00 0.00 2.59
5763 12928 0.250124 TCGACTTTGCACCAACGGAT 60.250 50.000 0.00 0.00 0.00 4.18
5764 12929 0.462225 TTCGACTTTGCACCAACGGA 60.462 50.000 0.00 0.00 0.00 4.69
5765 12930 0.041312 CTTCGACTTTGCACCAACGG 60.041 55.000 0.00 0.00 0.00 4.44
5766 12931 0.657368 GCTTCGACTTTGCACCAACG 60.657 55.000 0.00 0.00 0.00 4.10
5767 12932 0.317854 GGCTTCGACTTTGCACCAAC 60.318 55.000 0.00 0.00 0.00 3.77
5768 12933 0.749818 TGGCTTCGACTTTGCACCAA 60.750 50.000 0.00 0.00 0.00 3.67
5769 12934 1.153066 TGGCTTCGACTTTGCACCA 60.153 52.632 0.00 0.00 0.00 4.17
5770 12935 1.282875 GTGGCTTCGACTTTGCACC 59.717 57.895 0.00 0.00 0.00 5.01
5771 12936 0.380378 TTGTGGCTTCGACTTTGCAC 59.620 50.000 0.00 0.00 0.00 4.57
5772 12937 0.380378 GTTGTGGCTTCGACTTTGCA 59.620 50.000 0.00 0.00 0.00 4.08
5773 12938 0.657368 CGTTGTGGCTTCGACTTTGC 60.657 55.000 0.00 0.00 0.00 3.68
5774 12939 0.041312 CCGTTGTGGCTTCGACTTTG 60.041 55.000 0.00 0.00 0.00 2.77
5775 12940 2.317230 CCGTTGTGGCTTCGACTTT 58.683 52.632 0.00 0.00 0.00 2.66
5776 12941 4.043168 CCGTTGTGGCTTCGACTT 57.957 55.556 0.00 0.00 0.00 3.01
5798 12963 4.402528 TCATCGTTGCCACCCGGG 62.403 66.667 22.25 22.25 40.85 5.73
5799 12964 3.124921 GTCATCGTTGCCACCCGG 61.125 66.667 0.00 0.00 0.00 5.73
5800 12965 3.487202 CGTCATCGTTGCCACCCG 61.487 66.667 0.00 0.00 0.00 5.28
5801 12966 2.047655 TCGTCATCGTTGCCACCC 60.048 61.111 0.00 0.00 38.33 4.61
5802 12967 3.474806 CTCGTCATCGTTGCCACC 58.525 61.111 0.00 0.00 38.33 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.