Multiple sequence alignment - TraesCS1A01G077500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G077500 chr1A 100.000 3162 0 0 930 4091 60351393 60354554 0.000000e+00 5840.0
1 TraesCS1A01G077500 chr1A 100.000 442 0 0 1 442 60350464 60350905 0.000000e+00 817.0
2 TraesCS1A01G077500 chr1B 92.034 1858 92 29 1512 3330 99592970 99594810 0.000000e+00 2560.0
3 TraesCS1A01G077500 chr1B 93.060 562 28 4 931 1484 99592412 99592970 0.000000e+00 811.0
4 TraesCS1A01G077500 chr1B 86.998 623 29 16 3487 4091 99594968 99595556 0.000000e+00 654.0
5 TraesCS1A01G077500 chr1B 95.327 214 8 2 230 442 99592066 99592278 5.070000e-89 339.0
6 TraesCS1A01G077500 chr1B 84.932 73 4 2 2039 2111 642494879 642494814 2.640000e-07 67.6
7 TraesCS1A01G077500 chr1D 95.606 1229 43 9 2107 3330 62413362 62414584 0.000000e+00 1960.0
8 TraesCS1A01G077500 chr1D 94.384 730 29 3 930 1659 62412222 62412939 0.000000e+00 1110.0
9 TraesCS1A01G077500 chr1D 88.423 596 25 15 3523 4091 62414794 62415372 0.000000e+00 678.0
10 TraesCS1A01G077500 chr1D 93.867 375 19 2 1665 2039 62412995 62413365 2.760000e-156 562.0
11 TraesCS1A01G077500 chr1D 96.667 180 4 1 265 442 62411909 62412088 8.600000e-77 298.0
12 TraesCS1A01G077500 chr5A 74.006 931 206 29 2177 3084 92202800 92201883 3.030000e-91 346.0
13 TraesCS1A01G077500 chr5A 95.455 44 2 0 2066 2109 375289172 375289215 2.040000e-08 71.3
14 TraesCS1A01G077500 chr5A 95.238 42 1 1 2069 2109 540850116 540850157 9.490000e-07 65.8
15 TraesCS1A01G077500 chr5B 73.922 928 211 24 2177 3084 103334995 103334079 1.090000e-90 344.0
16 TraesCS1A01G077500 chr5B 95.652 46 2 0 2066 2111 538714248 538714293 1.580000e-09 75.0
17 TraesCS1A01G077500 chr5B 95.238 42 2 0 2068 2109 538714248 538714207 2.640000e-07 67.6
18 TraesCS1A01G077500 chr5B 100.000 30 0 0 2037 2066 596081708 596081679 5.710000e-04 56.5
19 TraesCS1A01G077500 chr5B 100.000 30 0 0 2037 2066 596670762 596670791 5.710000e-04 56.5
20 TraesCS1A01G077500 chr5D 76.327 245 58 0 2178 2422 97057760 97057516 9.230000e-27 132.0
21 TraesCS1A01G077500 chr5D 95.122 41 2 0 2069 2109 21217089 21217049 9.490000e-07 65.8
22 TraesCS1A01G077500 chr7A 97.619 42 1 0 2070 2111 506300184 506300143 5.670000e-09 73.1
23 TraesCS1A01G077500 chr7A 100.000 30 0 0 2037 2066 271379894 271379923 5.710000e-04 56.5
24 TraesCS1A01G077500 chr4A 97.368 38 1 0 2072 2109 539127317 539127280 9.490000e-07 65.8
25 TraesCS1A01G077500 chr4A 94.444 36 2 0 2031 2066 149042759 149042794 5.710000e-04 56.5
26 TraesCS1A01G077500 chr6B 96.970 33 0 1 2037 2069 641152157 641152126 2.000000e-03 54.7
27 TraesCS1A01G077500 chr2D 96.970 33 0 1 2035 2066 255682461 255682493 2.000000e-03 54.7
28 TraesCS1A01G077500 chr2B 96.970 33 0 1 2035 2066 280475914 280475882 2.000000e-03 54.7
29 TraesCS1A01G077500 chr6A 96.875 32 0 1 2038 2069 608997652 608997682 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G077500 chr1A 60350464 60354554 4090 False 3328.5 5840 100.00000 1 4091 2 chr1A.!!$F1 4090
1 TraesCS1A01G077500 chr1B 99592066 99595556 3490 False 1091.0 2560 91.85475 230 4091 4 chr1B.!!$F1 3861
2 TraesCS1A01G077500 chr1D 62411909 62415372 3463 False 921.6 1960 93.78940 265 4091 5 chr1D.!!$F1 3826
3 TraesCS1A01G077500 chr5A 92201883 92202800 917 True 346.0 346 74.00600 2177 3084 1 chr5A.!!$R1 907
4 TraesCS1A01G077500 chr5B 103334079 103334995 916 True 344.0 344 73.92200 2177 3084 1 chr5B.!!$R1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 1.068541 GCCAAACTCAACCTTAAGCCG 60.069 52.381 0.0 0.0 0.0 5.52 F
59 60 1.068541 CCAAACTCAACCTTAAGCCGC 60.069 52.381 0.0 0.0 0.0 6.53 F
60 61 1.606668 CAAACTCAACCTTAAGCCGCA 59.393 47.619 0.0 0.0 0.0 5.69 F
61 62 1.975660 AACTCAACCTTAAGCCGCAA 58.024 45.000 0.0 0.0 0.0 4.85 F
1219 1224 2.169330 GTCCTGAGACCGTATATCCCC 58.831 57.143 0.0 0.0 37.0 4.81 F
1511 1547 0.036306 GGTTCTAGGGTGGTGTGGTG 59.964 60.000 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1528 0.036306 CACCACACCACCCTAGAACC 59.964 60.0 0.00 0.0 0.00 3.62 R
1501 1537 0.107116 TACAACCACCACCACACCAC 60.107 55.0 0.00 0.0 0.00 4.16 R
1502 1538 0.181587 CTACAACCACCACCACACCA 59.818 55.0 0.00 0.0 0.00 4.17 R
1503 1539 0.536460 CCTACAACCACCACCACACC 60.536 60.0 0.00 0.0 0.00 4.16 R
2389 2501 0.460987 AGACTAATGCTGCGAGTGCC 60.461 55.0 6.42 0.0 41.78 5.01 R
3291 3427 0.521291 TGAGCAATAACAGCAACGGC 59.479 50.0 0.00 0.0 41.61 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.797642 AATACATAGAACAAGATTATCATGCCA 57.202 29.630 0.00 0.00 0.00 4.92
42 43 9.797642 ATACATAGAACAAGATTATCATGCCAA 57.202 29.630 0.00 0.00 0.00 4.52
43 44 8.523915 ACATAGAACAAGATTATCATGCCAAA 57.476 30.769 0.00 0.00 0.00 3.28
44 45 8.408601 ACATAGAACAAGATTATCATGCCAAAC 58.591 33.333 0.00 0.00 0.00 2.93
45 46 8.627403 CATAGAACAAGATTATCATGCCAAACT 58.373 33.333 0.00 0.00 0.00 2.66
46 47 7.093322 AGAACAAGATTATCATGCCAAACTC 57.907 36.000 0.00 0.00 0.00 3.01
47 48 6.660521 AGAACAAGATTATCATGCCAAACTCA 59.339 34.615 0.00 0.00 0.00 3.41
48 49 6.839124 ACAAGATTATCATGCCAAACTCAA 57.161 33.333 0.00 0.00 0.00 3.02
49 50 6.624423 ACAAGATTATCATGCCAAACTCAAC 58.376 36.000 0.00 0.00 0.00 3.18
50 51 5.841957 AGATTATCATGCCAAACTCAACC 57.158 39.130 0.00 0.00 0.00 3.77
51 52 5.513233 AGATTATCATGCCAAACTCAACCT 58.487 37.500 0.00 0.00 0.00 3.50
52 53 5.954150 AGATTATCATGCCAAACTCAACCTT 59.046 36.000 0.00 0.00 0.00 3.50
53 54 7.118723 AGATTATCATGCCAAACTCAACCTTA 58.881 34.615 0.00 0.00 0.00 2.69
54 55 7.615365 AGATTATCATGCCAAACTCAACCTTAA 59.385 33.333 0.00 0.00 0.00 1.85
55 56 5.649782 ATCATGCCAAACTCAACCTTAAG 57.350 39.130 0.00 0.00 0.00 1.85
56 57 3.255642 TCATGCCAAACTCAACCTTAAGC 59.744 43.478 0.00 0.00 0.00 3.09
57 58 1.960689 TGCCAAACTCAACCTTAAGCC 59.039 47.619 0.00 0.00 0.00 4.35
58 59 1.068541 GCCAAACTCAACCTTAAGCCG 60.069 52.381 0.00 0.00 0.00 5.52
59 60 1.068541 CCAAACTCAACCTTAAGCCGC 60.069 52.381 0.00 0.00 0.00 6.53
60 61 1.606668 CAAACTCAACCTTAAGCCGCA 59.393 47.619 0.00 0.00 0.00 5.69
61 62 1.975660 AACTCAACCTTAAGCCGCAA 58.024 45.000 0.00 0.00 0.00 4.85
62 63 1.975660 ACTCAACCTTAAGCCGCAAA 58.024 45.000 0.00 0.00 0.00 3.68
63 64 2.303175 ACTCAACCTTAAGCCGCAAAA 58.697 42.857 0.00 0.00 0.00 2.44
64 65 2.890945 ACTCAACCTTAAGCCGCAAAAT 59.109 40.909 0.00 0.00 0.00 1.82
65 66 4.076394 ACTCAACCTTAAGCCGCAAAATA 58.924 39.130 0.00 0.00 0.00 1.40
66 67 4.705023 ACTCAACCTTAAGCCGCAAAATAT 59.295 37.500 0.00 0.00 0.00 1.28
67 68 5.883673 ACTCAACCTTAAGCCGCAAAATATA 59.116 36.000 0.00 0.00 0.00 0.86
68 69 6.376018 ACTCAACCTTAAGCCGCAAAATATAA 59.624 34.615 0.00 0.00 0.00 0.98
69 70 6.791303 TCAACCTTAAGCCGCAAAATATAAG 58.209 36.000 0.00 0.00 0.00 1.73
70 71 5.183014 ACCTTAAGCCGCAAAATATAAGC 57.817 39.130 0.00 0.00 0.00 3.09
71 72 4.642885 ACCTTAAGCCGCAAAATATAAGCA 59.357 37.500 0.00 0.00 0.00 3.91
72 73 5.301805 ACCTTAAGCCGCAAAATATAAGCAT 59.698 36.000 0.00 0.00 0.00 3.79
73 74 5.630680 CCTTAAGCCGCAAAATATAAGCATG 59.369 40.000 0.00 0.00 0.00 4.06
74 75 4.916983 AAGCCGCAAAATATAAGCATGA 57.083 36.364 0.00 0.00 0.00 3.07
75 76 4.228912 AGCCGCAAAATATAAGCATGAC 57.771 40.909 0.00 0.00 0.00 3.06
76 77 3.631686 AGCCGCAAAATATAAGCATGACA 59.368 39.130 0.00 0.00 0.00 3.58
77 78 4.097741 AGCCGCAAAATATAAGCATGACAA 59.902 37.500 0.00 0.00 0.00 3.18
78 79 4.984161 GCCGCAAAATATAAGCATGACAAT 59.016 37.500 0.00 0.00 0.00 2.71
79 80 5.117592 GCCGCAAAATATAAGCATGACAATC 59.882 40.000 0.00 0.00 0.00 2.67
80 81 6.441274 CCGCAAAATATAAGCATGACAATCT 58.559 36.000 0.00 0.00 0.00 2.40
81 82 6.919662 CCGCAAAATATAAGCATGACAATCTT 59.080 34.615 0.00 0.00 0.00 2.40
82 83 7.436080 CCGCAAAATATAAGCATGACAATCTTT 59.564 33.333 0.00 0.00 0.00 2.52
83 84 8.474577 CGCAAAATATAAGCATGACAATCTTTC 58.525 33.333 0.00 0.00 0.00 2.62
84 85 8.758715 GCAAAATATAAGCATGACAATCTTTCC 58.241 33.333 0.00 0.00 0.00 3.13
88 89 9.851686 AATATAAGCATGACAATCTTTCCTACA 57.148 29.630 0.00 0.00 0.00 2.74
89 90 5.886960 AAGCATGACAATCTTTCCTACAC 57.113 39.130 0.00 0.00 0.00 2.90
90 91 4.910195 AGCATGACAATCTTTCCTACACA 58.090 39.130 0.00 0.00 0.00 3.72
91 92 5.316167 AGCATGACAATCTTTCCTACACAA 58.684 37.500 0.00 0.00 0.00 3.33
92 93 5.769662 AGCATGACAATCTTTCCTACACAAA 59.230 36.000 0.00 0.00 0.00 2.83
93 94 6.435277 AGCATGACAATCTTTCCTACACAAAT 59.565 34.615 0.00 0.00 0.00 2.32
94 95 6.749118 GCATGACAATCTTTCCTACACAAATC 59.251 38.462 0.00 0.00 0.00 2.17
95 96 7.575532 GCATGACAATCTTTCCTACACAAATCA 60.576 37.037 0.00 0.00 0.00 2.57
96 97 8.464404 CATGACAATCTTTCCTACACAAATCAT 58.536 33.333 0.00 0.00 0.00 2.45
97 98 8.408043 TGACAATCTTTCCTACACAAATCATT 57.592 30.769 0.00 0.00 0.00 2.57
98 99 8.298854 TGACAATCTTTCCTACACAAATCATTG 58.701 33.333 0.00 0.00 42.46 2.82
99 100 7.092716 ACAATCTTTCCTACACAAATCATTGC 58.907 34.615 0.00 0.00 40.34 3.56
100 101 6.839124 ATCTTTCCTACACAAATCATTGCA 57.161 33.333 0.00 0.00 40.34 4.08
101 102 6.647334 TCTTTCCTACACAAATCATTGCAA 57.353 33.333 0.00 0.00 40.34 4.08
102 103 7.048629 TCTTTCCTACACAAATCATTGCAAA 57.951 32.000 1.71 0.00 40.34 3.68
103 104 7.669427 TCTTTCCTACACAAATCATTGCAAAT 58.331 30.769 1.71 0.00 40.34 2.32
104 105 8.149647 TCTTTCCTACACAAATCATTGCAAATT 58.850 29.630 1.71 0.00 40.34 1.82
105 106 8.674263 TTTCCTACACAAATCATTGCAAATTT 57.326 26.923 1.71 2.96 40.34 1.82
106 107 7.887996 TCCTACACAAATCATTGCAAATTTC 57.112 32.000 1.71 0.00 40.34 2.17
107 108 6.873076 TCCTACACAAATCATTGCAAATTTCC 59.127 34.615 1.71 0.00 40.34 3.13
108 109 6.649973 CCTACACAAATCATTGCAAATTTCCA 59.350 34.615 1.71 0.00 40.34 3.53
109 110 7.334921 CCTACACAAATCATTGCAAATTTCCAT 59.665 33.333 1.71 0.00 40.34 3.41
110 111 6.904498 ACACAAATCATTGCAAATTTCCATG 58.096 32.000 1.71 6.81 40.34 3.66
111 112 5.797934 CACAAATCATTGCAAATTTCCATGC 59.202 36.000 1.71 0.00 40.34 4.06
112 113 5.708230 ACAAATCATTGCAAATTTCCATGCT 59.292 32.000 1.71 0.00 42.97 3.79
113 114 6.879993 ACAAATCATTGCAAATTTCCATGCTA 59.120 30.769 1.71 0.00 42.97 3.49
114 115 6.913873 AATCATTGCAAATTTCCATGCTAC 57.086 33.333 1.71 0.00 42.97 3.58
115 116 5.664294 TCATTGCAAATTTCCATGCTACT 57.336 34.783 1.71 0.00 42.97 2.57
116 117 6.040209 TCATTGCAAATTTCCATGCTACTT 57.960 33.333 1.71 0.00 42.97 2.24
117 118 6.465948 TCATTGCAAATTTCCATGCTACTTT 58.534 32.000 1.71 0.00 42.97 2.66
118 119 6.935771 TCATTGCAAATTTCCATGCTACTTTT 59.064 30.769 1.71 0.00 42.97 2.27
119 120 6.542574 TTGCAAATTTCCATGCTACTTTTG 57.457 33.333 0.00 0.00 42.97 2.44
120 121 5.609423 TGCAAATTTCCATGCTACTTTTGT 58.391 33.333 1.83 0.00 42.97 2.83
121 122 6.753180 TGCAAATTTCCATGCTACTTTTGTA 58.247 32.000 1.83 0.00 42.97 2.41
122 123 6.644592 TGCAAATTTCCATGCTACTTTTGTAC 59.355 34.615 1.83 0.00 42.97 2.90
123 124 6.644592 GCAAATTTCCATGCTACTTTTGTACA 59.355 34.615 0.00 0.00 39.46 2.90
124 125 7.331687 GCAAATTTCCATGCTACTTTTGTACAT 59.668 33.333 0.00 0.00 39.46 2.29
125 126 8.863049 CAAATTTCCATGCTACTTTTGTACATC 58.137 33.333 0.00 0.00 30.20 3.06
126 127 7.701539 ATTTCCATGCTACTTTTGTACATCA 57.298 32.000 0.00 0.00 30.20 3.07
127 128 6.741992 TTCCATGCTACTTTTGTACATCAG 57.258 37.500 0.00 0.00 30.20 2.90
128 129 6.048732 TCCATGCTACTTTTGTACATCAGA 57.951 37.500 0.00 0.00 30.20 3.27
129 130 6.472016 TCCATGCTACTTTTGTACATCAGAA 58.528 36.000 0.00 0.00 30.20 3.02
130 131 7.112122 TCCATGCTACTTTTGTACATCAGAAT 58.888 34.615 0.00 0.00 30.20 2.40
131 132 7.280876 TCCATGCTACTTTTGTACATCAGAATC 59.719 37.037 0.00 0.00 30.20 2.52
132 133 7.066163 CCATGCTACTTTTGTACATCAGAATCA 59.934 37.037 0.00 0.00 30.20 2.57
133 134 7.977789 TGCTACTTTTGTACATCAGAATCAA 57.022 32.000 0.00 0.00 0.00 2.57
134 135 8.389779 TGCTACTTTTGTACATCAGAATCAAA 57.610 30.769 0.00 0.00 0.00 2.69
135 136 9.013229 TGCTACTTTTGTACATCAGAATCAAAT 57.987 29.630 0.00 0.00 0.00 2.32
144 145 9.447157 TGTACATCAGAATCAAATATGAACACA 57.553 29.630 0.00 0.00 39.49 3.72
145 146 9.708222 GTACATCAGAATCAAATATGAACACAC 57.292 33.333 0.00 0.00 39.49 3.82
146 147 7.765307 ACATCAGAATCAAATATGAACACACC 58.235 34.615 0.00 0.00 39.49 4.16
147 148 7.613022 ACATCAGAATCAAATATGAACACACCT 59.387 33.333 0.00 0.00 39.49 4.00
148 149 9.112725 CATCAGAATCAAATATGAACACACCTA 57.887 33.333 0.00 0.00 39.49 3.08
149 150 8.492673 TCAGAATCAAATATGAACACACCTAC 57.507 34.615 0.00 0.00 39.49 3.18
150 151 7.552687 TCAGAATCAAATATGAACACACCTACC 59.447 37.037 0.00 0.00 39.49 3.18
151 152 6.828785 AGAATCAAATATGAACACACCTACCC 59.171 38.462 0.00 0.00 39.49 3.69
152 153 4.509616 TCAAATATGAACACACCTACCCG 58.490 43.478 0.00 0.00 30.99 5.28
153 154 4.020039 TCAAATATGAACACACCTACCCGT 60.020 41.667 0.00 0.00 30.99 5.28
154 155 4.563140 AATATGAACACACCTACCCGTT 57.437 40.909 0.00 0.00 0.00 4.44
155 156 5.680594 AATATGAACACACCTACCCGTTA 57.319 39.130 0.00 0.00 0.00 3.18
156 157 5.881923 ATATGAACACACCTACCCGTTAT 57.118 39.130 0.00 0.00 0.00 1.89
157 158 6.982160 ATATGAACACACCTACCCGTTATA 57.018 37.500 0.00 0.00 0.00 0.98
158 159 5.881923 ATGAACACACCTACCCGTTATAT 57.118 39.130 0.00 0.00 0.00 0.86
159 160 5.266733 TGAACACACCTACCCGTTATATC 57.733 43.478 0.00 0.00 0.00 1.63
160 161 4.957954 TGAACACACCTACCCGTTATATCT 59.042 41.667 0.00 0.00 0.00 1.98
161 162 6.128486 TGAACACACCTACCCGTTATATCTA 58.872 40.000 0.00 0.00 0.00 1.98
162 163 6.606796 TGAACACACCTACCCGTTATATCTAA 59.393 38.462 0.00 0.00 0.00 2.10
163 164 7.288389 TGAACACACCTACCCGTTATATCTAAT 59.712 37.037 0.00 0.00 0.00 1.73
164 165 7.607615 ACACACCTACCCGTTATATCTAATT 57.392 36.000 0.00 0.00 0.00 1.40
165 166 8.026396 ACACACCTACCCGTTATATCTAATTT 57.974 34.615 0.00 0.00 0.00 1.82
166 167 8.488668 ACACACCTACCCGTTATATCTAATTTT 58.511 33.333 0.00 0.00 0.00 1.82
167 168 9.333724 CACACCTACCCGTTATATCTAATTTTT 57.666 33.333 0.00 0.00 0.00 1.94
175 176 9.341899 CCCGTTATATCTAATTTTTATGCAAGC 57.658 33.333 0.00 0.00 0.00 4.01
176 177 9.891828 CCGTTATATCTAATTTTTATGCAAGCA 57.108 29.630 0.00 0.00 0.00 3.91
220 221 9.959749 ATCATTAACTTTGTGTTGAATAAACGT 57.040 25.926 0.00 0.00 42.10 3.99
221 222 9.790389 TCATTAACTTTGTGTTGAATAAACGTT 57.210 25.926 0.00 0.00 42.10 3.99
224 225 7.964545 AACTTTGTGTTGAATAAACGTTCTC 57.035 32.000 0.00 0.00 42.10 2.87
225 226 6.189567 ACTTTGTGTTGAATAAACGTTCTCG 58.810 36.000 0.00 0.00 42.10 4.04
226 227 4.123276 TGTGTTGAATAAACGTTCTCGC 57.877 40.909 0.00 0.00 42.10 5.03
227 228 3.805422 TGTGTTGAATAAACGTTCTCGCT 59.195 39.130 0.00 0.00 42.10 4.93
228 229 4.271533 TGTGTTGAATAAACGTTCTCGCTT 59.728 37.500 0.00 0.00 42.10 4.68
249 250 3.146104 ACTCCAACACCCAAATCAGAG 57.854 47.619 0.00 0.00 0.00 3.35
254 255 3.244700 CCAACACCCAAATCAGAGAGAGT 60.245 47.826 0.00 0.00 0.00 3.24
255 256 3.692257 ACACCCAAATCAGAGAGAGTG 57.308 47.619 0.00 0.00 0.00 3.51
256 257 2.304180 ACACCCAAATCAGAGAGAGTGG 59.696 50.000 0.00 0.00 35.89 4.00
258 259 2.706339 CCAAATCAGAGAGAGTGGGG 57.294 55.000 0.00 0.00 31.53 4.96
259 260 2.191400 CCAAATCAGAGAGAGTGGGGA 58.809 52.381 0.00 0.00 31.53 4.81
260 261 2.170187 CCAAATCAGAGAGAGTGGGGAG 59.830 54.545 0.00 0.00 31.53 4.30
261 262 3.102972 CAAATCAGAGAGAGTGGGGAGA 58.897 50.000 0.00 0.00 0.00 3.71
1125 1130 2.294078 GGAGGTGGAGGTGGAGGTG 61.294 68.421 0.00 0.00 0.00 4.00
1187 1192 4.538738 GCTAAGACTCCTCCCTCTCTTTA 58.461 47.826 0.00 0.00 0.00 1.85
1198 1203 4.475345 TCCCTCTCTTTACTCCTATGCTC 58.525 47.826 0.00 0.00 0.00 4.26
1219 1224 2.169330 GTCCTGAGACCGTATATCCCC 58.831 57.143 0.00 0.00 37.00 4.81
1302 1307 9.130661 TCTGATTTTTAGAACAGATTTGTGGAA 57.869 29.630 0.00 0.00 37.67 3.53
1367 1372 7.693969 ATTATGGCCATACTATTCTTGAAGC 57.306 36.000 25.39 0.00 0.00 3.86
1415 1428 6.591750 TGGTTTCTCTTCCTCTTAGTACAG 57.408 41.667 0.00 0.00 0.00 2.74
1444 1457 4.168760 GTTATCTGCTTGTGGATGCAAAC 58.831 43.478 0.00 0.00 38.81 2.93
1484 1520 8.822805 TCATAGAAAAAGTAGCTCCCTTTTAGA 58.177 33.333 18.94 10.98 40.32 2.10
1485 1521 9.103861 CATAGAAAAAGTAGCTCCCTTTTAGAG 57.896 37.037 18.94 8.56 40.32 2.43
1486 1522 6.477253 AGAAAAAGTAGCTCCCTTTTAGAGG 58.523 40.000 18.94 0.00 45.86 3.69
1497 1533 4.642466 CCTTTTAGAGGGTTCTGGTTCT 57.358 45.455 0.00 0.00 42.26 3.01
1498 1534 5.757099 CCTTTTAGAGGGTTCTGGTTCTA 57.243 43.478 0.00 0.00 42.26 2.10
1499 1535 5.735766 CCTTTTAGAGGGTTCTGGTTCTAG 58.264 45.833 0.00 0.00 42.26 2.43
1500 1536 5.338463 CCTTTTAGAGGGTTCTGGTTCTAGG 60.338 48.000 0.00 0.00 42.26 3.02
1501 1537 2.255770 AGAGGGTTCTGGTTCTAGGG 57.744 55.000 0.00 0.00 30.72 3.53
1502 1538 1.437547 AGAGGGTTCTGGTTCTAGGGT 59.562 52.381 0.00 0.00 30.72 4.34
1503 1539 1.555533 GAGGGTTCTGGTTCTAGGGTG 59.444 57.143 0.00 0.00 0.00 4.61
1504 1540 0.618981 GGGTTCTGGTTCTAGGGTGG 59.381 60.000 0.00 0.00 0.00 4.61
1505 1541 1.359168 GGTTCTGGTTCTAGGGTGGT 58.641 55.000 0.00 0.00 0.00 4.16
1506 1542 1.003233 GGTTCTGGTTCTAGGGTGGTG 59.997 57.143 0.00 0.00 0.00 4.17
1507 1543 1.697982 GTTCTGGTTCTAGGGTGGTGT 59.302 52.381 0.00 0.00 0.00 4.16
1508 1544 1.348064 TCTGGTTCTAGGGTGGTGTG 58.652 55.000 0.00 0.00 0.00 3.82
1509 1545 0.324943 CTGGTTCTAGGGTGGTGTGG 59.675 60.000 0.00 0.00 0.00 4.17
1510 1546 0.400815 TGGTTCTAGGGTGGTGTGGT 60.401 55.000 0.00 0.00 0.00 4.16
1511 1547 0.036306 GGTTCTAGGGTGGTGTGGTG 59.964 60.000 0.00 0.00 0.00 4.17
1591 1629 5.919141 GTGTGTAGAGTTGTTGAATCGTAGT 59.081 40.000 0.00 0.00 0.00 2.73
1592 1630 7.040892 AGTGTGTAGAGTTGTTGAATCGTAGTA 60.041 37.037 0.00 0.00 0.00 1.82
1593 1631 7.270793 GTGTGTAGAGTTGTTGAATCGTAGTAG 59.729 40.741 0.00 0.00 0.00 2.57
1621 1659 3.308820 GCTTTTGCAAAGTGCTGTTTC 57.691 42.857 23.24 3.17 45.31 2.78
1639 1677 6.565623 GCTGTTTCTTCTCAATCAAGTCAGAC 60.566 42.308 0.00 0.00 0.00 3.51
1652 1690 7.621428 ATCAAGTCAGACAATATCAGGTTTG 57.379 36.000 2.66 0.00 0.00 2.93
1670 1708 4.581077 TTTGTGCTGCAAATATGTGTCA 57.419 36.364 2.77 0.00 41.68 3.58
1674 1712 4.142556 TGTGCTGCAAATATGTGTCATCTG 60.143 41.667 2.77 0.00 0.00 2.90
1675 1713 4.095334 GTGCTGCAAATATGTGTCATCTGA 59.905 41.667 2.77 0.00 0.00 3.27
1689 1774 3.364023 GTCATCTGACGACGAAACGATTT 59.636 43.478 0.00 0.00 35.12 2.17
1732 1817 3.279434 AGTCCGGGCTTTTAATCATGTC 58.721 45.455 0.35 0.00 0.00 3.06
1733 1818 3.013921 GTCCGGGCTTTTAATCATGTCA 58.986 45.455 0.00 0.00 0.00 3.58
1740 1825 6.128007 CGGGCTTTTAATCATGTCAGTTTAGT 60.128 38.462 0.00 0.00 0.00 2.24
1750 1835 8.768501 ATCATGTCAGTTTAGTAGACTATGGA 57.231 34.615 0.00 0.00 33.56 3.41
1766 1851 8.083828 AGACTATGGAGAAAAGCTTATCTTGA 57.916 34.615 0.00 0.00 34.67 3.02
1803 1888 5.619086 CGAATCCAAGAAACATGGTGGTAAC 60.619 44.000 0.00 0.00 39.09 2.50
1992 2077 3.832237 CTCGCTGTTGGTGTGCCCT 62.832 63.158 0.00 0.00 0.00 5.19
2001 2086 0.976073 TGGTGTGCCCTCTACCTAGC 60.976 60.000 0.00 0.00 35.51 3.42
2042 2127 9.640963 AAGTCAGTAAGTGATTATTGTGTACTC 57.359 33.333 0.00 0.00 37.56 2.59
2044 2129 7.491696 GTCAGTAAGTGATTATTGTGTACTCCC 59.508 40.741 0.00 0.00 37.56 4.30
2045 2130 7.399191 TCAGTAAGTGATTATTGTGTACTCCCT 59.601 37.037 0.00 0.00 0.00 4.20
2047 2132 5.615925 AGTGATTATTGTGTACTCCCTCC 57.384 43.478 0.00 0.00 0.00 4.30
2048 2133 4.099573 AGTGATTATTGTGTACTCCCTCCG 59.900 45.833 0.00 0.00 0.00 4.63
2049 2134 2.973694 TTATTGTGTACTCCCTCCGC 57.026 50.000 0.00 0.00 0.00 5.54
2051 2136 0.981183 ATTGTGTACTCCCTCCGCAA 59.019 50.000 0.00 0.00 33.61 4.85
2053 2138 0.320374 TGTGTACTCCCTCCGCAAAG 59.680 55.000 0.00 0.00 0.00 2.77
2054 2139 0.606604 GTGTACTCCCTCCGCAAAGA 59.393 55.000 0.00 0.00 0.00 2.52
2055 2140 1.001633 GTGTACTCCCTCCGCAAAGAA 59.998 52.381 0.00 0.00 0.00 2.52
2056 2141 1.695242 TGTACTCCCTCCGCAAAGAAA 59.305 47.619 0.00 0.00 0.00 2.52
2057 2142 2.304761 TGTACTCCCTCCGCAAAGAAAT 59.695 45.455 0.00 0.00 0.00 2.17
2061 2146 5.367945 ACTCCCTCCGCAAAGAAATATAA 57.632 39.130 0.00 0.00 0.00 0.98
2062 2147 5.368989 ACTCCCTCCGCAAAGAAATATAAG 58.631 41.667 0.00 0.00 0.00 1.73
2065 2150 4.214332 CCCTCCGCAAAGAAATATAAGAGC 59.786 45.833 0.00 0.00 0.00 4.09
2069 2154 6.578944 TCCGCAAAGAAATATAAGAGCTGTA 58.421 36.000 0.00 0.00 0.00 2.74
2070 2155 6.701841 TCCGCAAAGAAATATAAGAGCTGTAG 59.298 38.462 0.00 0.00 0.00 2.74
2072 2157 7.340699 CGCAAAGAAATATAAGAGCTGTAGTG 58.659 38.462 0.00 0.00 0.00 2.74
2073 2158 7.222805 CGCAAAGAAATATAAGAGCTGTAGTGA 59.777 37.037 0.00 0.00 0.00 3.41
2074 2159 9.050601 GCAAAGAAATATAAGAGCTGTAGTGAT 57.949 33.333 0.00 0.00 0.00 3.06
2078 2163 8.928448 AGAAATATAAGAGCTGTAGTGATCCAA 58.072 33.333 0.00 0.00 0.00 3.53
2079 2164 9.547753 GAAATATAAGAGCTGTAGTGATCCAAA 57.452 33.333 0.00 0.00 0.00 3.28
2080 2165 8.894768 AATATAAGAGCTGTAGTGATCCAAAC 57.105 34.615 0.00 0.00 0.00 2.93
2081 2166 3.238108 AGAGCTGTAGTGATCCAAACG 57.762 47.619 0.00 0.00 0.00 3.60
2082 2167 1.661112 GAGCTGTAGTGATCCAAACGC 59.339 52.381 0.00 0.00 0.00 4.84
2083 2168 1.276421 AGCTGTAGTGATCCAAACGCT 59.724 47.619 0.00 0.00 0.00 5.07
2087 2186 2.560981 TGTAGTGATCCAAACGCTCTCA 59.439 45.455 0.00 0.00 0.00 3.27
2089 2188 4.401202 TGTAGTGATCCAAACGCTCTCATA 59.599 41.667 0.00 0.00 0.00 2.15
2091 2190 5.028549 AGTGATCCAAACGCTCTCATATT 57.971 39.130 0.00 0.00 0.00 1.28
2093 2192 5.525378 AGTGATCCAAACGCTCTCATATTTC 59.475 40.000 0.00 0.00 0.00 2.17
2098 2197 7.303634 TCCAAACGCTCTCATATTTCTTTAC 57.696 36.000 0.00 0.00 0.00 2.01
2099 2198 6.035650 TCCAAACGCTCTCATATTTCTTTACG 59.964 38.462 0.00 0.00 0.00 3.18
2113 2212 6.363167 TTTCTTTACGGAGGGAGTATTTGA 57.637 37.500 0.00 0.00 0.00 2.69
2126 2238 5.521372 GGGAGTATTTGATTGCTGCATTTTC 59.479 40.000 1.84 1.95 0.00 2.29
2140 2252 2.035066 GCATTTTCTCCACAGCAACTGT 59.965 45.455 0.00 0.00 46.51 3.55
2153 2265 3.427161 GCAACTGTGCCTAAATGGATC 57.573 47.619 0.00 0.00 45.68 3.36
2154 2266 2.754552 GCAACTGTGCCTAAATGGATCA 59.245 45.455 0.00 0.00 45.68 2.92
2292 2404 8.047413 CAAGCATTGCAAGTGGATGATATATA 57.953 34.615 11.91 0.00 40.39 0.86
2320 2432 1.767289 CCGTCGAGGAATGTATTCGG 58.233 55.000 6.70 0.00 45.00 4.30
2365 2477 2.025037 TGCCCTGGCTGACAATTTAGAT 60.025 45.455 9.97 0.00 42.51 1.98
2389 2501 2.408022 CGCTCCTCCGGAACTACG 59.592 66.667 5.23 3.70 0.00 3.51
2429 2541 3.350219 TTGGGAGGTAAGATGTGCTTC 57.650 47.619 0.00 0.00 38.05 3.86
2541 2663 3.587933 TTGGTTGCGAACACCGGC 61.588 61.111 0.00 0.00 39.04 6.13
2604 2726 3.062466 TCTCGAGACCACAGGGCG 61.062 66.667 12.08 0.00 34.63 6.13
2844 2966 4.377708 ATGACGAGCCAGCACGCA 62.378 61.111 9.39 8.80 33.54 5.24
2919 3041 2.107953 GAGCTCGTCATGGAGGCC 59.892 66.667 0.00 0.00 34.56 5.19
3285 3421 3.454082 TCCCATTGTTTCCTGTGCTTTTT 59.546 39.130 0.00 0.00 0.00 1.94
3286 3422 3.809279 CCCATTGTTTCCTGTGCTTTTTC 59.191 43.478 0.00 0.00 0.00 2.29
3287 3423 4.443315 CCCATTGTTTCCTGTGCTTTTTCT 60.443 41.667 0.00 0.00 0.00 2.52
3288 3424 4.746611 CCATTGTTTCCTGTGCTTTTTCTC 59.253 41.667 0.00 0.00 0.00 2.87
3289 3425 5.452356 CCATTGTTTCCTGTGCTTTTTCTCT 60.452 40.000 0.00 0.00 0.00 3.10
3291 3427 4.997565 TGTTTCCTGTGCTTTTTCTCTTG 58.002 39.130 0.00 0.00 0.00 3.02
3292 3428 3.715628 TTCCTGTGCTTTTTCTCTTGC 57.284 42.857 0.00 0.00 0.00 4.01
3293 3429 1.956477 TCCTGTGCTTTTTCTCTTGCC 59.044 47.619 0.00 0.00 0.00 4.52
3337 3493 0.168128 GCTGTTGTACATCCGTTGCC 59.832 55.000 0.00 0.00 0.00 4.52
3338 3494 1.808411 CTGTTGTACATCCGTTGCCT 58.192 50.000 0.00 0.00 0.00 4.75
3358 3514 1.153489 CACGGATGGACCTGCTCTG 60.153 63.158 0.00 0.00 36.31 3.35
3361 3517 1.395045 CGGATGGACCTGCTCTGCTA 61.395 60.000 0.00 0.00 36.31 3.49
3362 3518 1.055040 GGATGGACCTGCTCTGCTAT 58.945 55.000 0.00 0.00 35.41 2.97
3363 3519 1.419387 GGATGGACCTGCTCTGCTATT 59.581 52.381 0.00 0.00 35.41 1.73
3365 3521 1.571955 TGGACCTGCTCTGCTATTGA 58.428 50.000 0.00 0.00 0.00 2.57
3402 3593 4.149571 CGATTCAGAGAAGTGTGAGTGTTG 59.850 45.833 0.00 0.00 0.00 3.33
3407 3598 6.403049 TCAGAGAAGTGTGAGTGTTGTTTAA 58.597 36.000 0.00 0.00 0.00 1.52
3408 3599 6.312918 TCAGAGAAGTGTGAGTGTTGTTTAAC 59.687 38.462 0.00 0.00 37.32 2.01
3412 3603 2.937799 GTGTGAGTGTTGTTTAACGGGA 59.062 45.455 0.00 0.00 39.71 5.14
3426 3617 4.309950 GGGACGTCCGTTGCCACT 62.310 66.667 27.68 0.00 36.71 4.00
3428 3619 2.604174 GGACGTCCGTTGCCACTTG 61.604 63.158 20.85 0.00 0.00 3.16
3430 3621 4.025401 CGTCCGTTGCCACTTGCC 62.025 66.667 0.00 0.00 40.16 4.52
3431 3622 2.904866 GTCCGTTGCCACTTGCCA 60.905 61.111 0.00 0.00 40.16 4.92
3432 3623 2.904866 TCCGTTGCCACTTGCCAC 60.905 61.111 0.00 0.00 40.16 5.01
3435 3626 3.739167 GTTGCCACTTGCCACGTA 58.261 55.556 0.00 0.00 40.16 3.57
3436 3627 2.253513 GTTGCCACTTGCCACGTAT 58.746 52.632 0.00 0.00 40.16 3.06
3437 3628 0.109781 GTTGCCACTTGCCACGTATG 60.110 55.000 0.00 0.00 40.16 2.39
3438 3629 0.250510 TTGCCACTTGCCACGTATGA 60.251 50.000 0.00 0.00 40.16 2.15
3439 3630 0.673333 TGCCACTTGCCACGTATGAG 60.673 55.000 0.00 0.00 40.16 2.90
3440 3631 0.673644 GCCACTTGCCACGTATGAGT 60.674 55.000 0.00 0.00 0.00 3.41
3441 3632 1.404986 GCCACTTGCCACGTATGAGTA 60.405 52.381 0.00 0.00 0.00 2.59
3442 3633 2.540515 CCACTTGCCACGTATGAGTAG 58.459 52.381 0.00 0.00 0.00 2.57
3443 3634 2.165641 CCACTTGCCACGTATGAGTAGA 59.834 50.000 0.00 0.00 0.00 2.59
3444 3635 3.439293 CACTTGCCACGTATGAGTAGAG 58.561 50.000 0.00 0.00 0.00 2.43
3445 3636 3.128764 CACTTGCCACGTATGAGTAGAGA 59.871 47.826 0.00 0.00 0.00 3.10
3446 3637 3.954904 ACTTGCCACGTATGAGTAGAGAT 59.045 43.478 0.00 0.00 0.00 2.75
3447 3638 5.008712 CACTTGCCACGTATGAGTAGAGATA 59.991 44.000 0.00 0.00 0.00 1.98
3448 3639 5.770663 ACTTGCCACGTATGAGTAGAGATAT 59.229 40.000 0.00 0.00 0.00 1.63
3449 3640 6.940867 ACTTGCCACGTATGAGTAGAGATATA 59.059 38.462 0.00 0.00 0.00 0.86
3450 3641 7.447545 ACTTGCCACGTATGAGTAGAGATATAA 59.552 37.037 0.00 0.00 0.00 0.98
3451 3642 7.754851 TGCCACGTATGAGTAGAGATATAAA 57.245 36.000 0.00 0.00 0.00 1.40
3452 3643 8.173542 TGCCACGTATGAGTAGAGATATAAAA 57.826 34.615 0.00 0.00 0.00 1.52
3453 3644 8.803235 TGCCACGTATGAGTAGAGATATAAAAT 58.197 33.333 0.00 0.00 0.00 1.82
3454 3645 9.640963 GCCACGTATGAGTAGAGATATAAAATT 57.359 33.333 0.00 0.00 0.00 1.82
3520 3711 6.648725 ACTCTTCGTGAAAAATTAGGATCG 57.351 37.500 0.00 0.00 0.00 3.69
3524 3715 5.403897 TCGTGAAAAATTAGGATCGATGC 57.596 39.130 9.16 9.16 0.00 3.91
3526 3717 5.584649 TCGTGAAAAATTAGGATCGATGCTT 59.415 36.000 25.06 5.43 0.00 3.91
3527 3718 5.904080 CGTGAAAAATTAGGATCGATGCTTC 59.096 40.000 25.06 14.93 0.00 3.86
3535 3747 4.347360 AGGATCGATGCTTCATCATCAA 57.653 40.909 14.37 0.00 42.15 2.57
3569 3781 2.942796 TAGCAGGTGCCGTGGTGAG 61.943 63.158 0.00 0.00 43.38 3.51
3570 3782 4.626081 GCAGGTGCCGTGGTGAGT 62.626 66.667 0.00 0.00 34.31 3.41
3571 3783 2.666190 CAGGTGCCGTGGTGAGTG 60.666 66.667 0.00 0.00 0.00 3.51
3572 3784 2.842462 AGGTGCCGTGGTGAGTGA 60.842 61.111 0.00 0.00 0.00 3.41
3584 3796 2.079925 GGTGAGTGAATGAAGCCAGAC 58.920 52.381 0.00 0.00 0.00 3.51
3600 3812 2.753452 CCAGACAAGACTTAGCGGTAGA 59.247 50.000 0.00 0.00 0.00 2.59
3613 3825 4.748277 AGCGGTAGAGGTAAATTTAGCA 57.252 40.909 24.95 6.08 33.76 3.49
3698 3910 4.394712 CACCAGACACGCCCCCTC 62.395 72.222 0.00 0.00 0.00 4.30
3699 3911 4.954118 ACCAGACACGCCCCCTCA 62.954 66.667 0.00 0.00 0.00 3.86
3720 3933 1.198759 TCACCTAACCCACAGCTCCC 61.199 60.000 0.00 0.00 0.00 4.30
3721 3934 1.161113 ACCTAACCCACAGCTCCCT 59.839 57.895 0.00 0.00 0.00 4.20
3722 3935 0.475828 ACCTAACCCACAGCTCCCTT 60.476 55.000 0.00 0.00 0.00 3.95
3723 3936 0.698818 CCTAACCCACAGCTCCCTTT 59.301 55.000 0.00 0.00 0.00 3.11
3757 3970 2.904434 ACAACCCCTAGTCGTCAAGAAT 59.096 45.455 0.00 0.00 0.00 2.40
3766 3979 7.014422 CCCCTAGTCGTCAAGAATAATTCTACT 59.986 40.741 0.00 0.00 39.61 2.57
3767 3980 9.064706 CCCTAGTCGTCAAGAATAATTCTACTA 57.935 37.037 0.00 0.00 39.61 1.82
3768 3981 9.881529 CCTAGTCGTCAAGAATAATTCTACTAC 57.118 37.037 0.00 0.00 39.61 2.73
3769 3982 9.881529 CTAGTCGTCAAGAATAATTCTACTACC 57.118 37.037 0.00 0.00 39.61 3.18
3770 3983 8.522542 AGTCGTCAAGAATAATTCTACTACCT 57.477 34.615 0.00 0.00 39.61 3.08
3771 3984 8.968969 AGTCGTCAAGAATAATTCTACTACCTT 58.031 33.333 0.00 0.00 39.61 3.50
3772 3985 9.583765 GTCGTCAAGAATAATTCTACTACCTTT 57.416 33.333 0.00 0.00 39.61 3.11
3773 3986 9.798994 TCGTCAAGAATAATTCTACTACCTTTC 57.201 33.333 0.00 0.00 39.61 2.62
3774 3987 9.032420 CGTCAAGAATAATTCTACTACCTTTCC 57.968 37.037 0.00 0.00 39.61 3.13
3775 3988 9.032420 GTCAAGAATAATTCTACTACCTTTCCG 57.968 37.037 0.00 0.00 39.61 4.30
3776 3989 8.974238 TCAAGAATAATTCTACTACCTTTCCGA 58.026 33.333 0.00 0.00 39.61 4.55
3777 3990 9.595823 CAAGAATAATTCTACTACCTTTCCGAA 57.404 33.333 0.00 0.00 39.61 4.30
3778 3991 9.819267 AAGAATAATTCTACTACCTTTCCGAAG 57.181 33.333 0.00 0.00 39.61 3.79
3779 3992 7.927092 AGAATAATTCTACTACCTTTCCGAAGC 59.073 37.037 0.00 0.00 38.49 3.86
3780 3993 3.881937 TTCTACTACCTTTCCGAAGCC 57.118 47.619 0.00 0.00 0.00 4.35
3781 3994 3.097342 TCTACTACCTTTCCGAAGCCT 57.903 47.619 0.00 0.00 0.00 4.58
3782 3995 2.758979 TCTACTACCTTTCCGAAGCCTG 59.241 50.000 0.00 0.00 0.00 4.85
3783 3996 1.349067 ACTACCTTTCCGAAGCCTGT 58.651 50.000 0.00 0.00 0.00 4.00
3789 4002 2.494059 CTTTCCGAAGCCTGTCTTTCA 58.506 47.619 0.00 0.00 34.56 2.69
3805 4035 7.767659 CCTGTCTTTCATAAATCTGATGAGACA 59.232 37.037 14.59 14.59 41.43 3.41
3953 4190 3.368248 AGGTGATAGGCAATGCACAAAT 58.632 40.909 7.79 0.00 33.09 2.32
3954 4191 3.131577 AGGTGATAGGCAATGCACAAATG 59.868 43.478 7.79 0.00 33.09 2.32
3955 4192 3.119029 GGTGATAGGCAATGCACAAATGT 60.119 43.478 7.79 0.00 33.09 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.797642 TGGCATGATAATCTTGTTCTATGTATT 57.202 29.630 0.00 0.00 0.00 1.89
16 17 9.797642 TTGGCATGATAATCTTGTTCTATGTAT 57.202 29.630 0.00 0.00 0.00 2.29
17 18 9.625747 TTTGGCATGATAATCTTGTTCTATGTA 57.374 29.630 0.00 0.00 0.00 2.29
18 19 8.408601 GTTTGGCATGATAATCTTGTTCTATGT 58.591 33.333 0.00 0.00 0.00 2.29
19 20 8.627403 AGTTTGGCATGATAATCTTGTTCTATG 58.373 33.333 0.00 0.00 0.00 2.23
20 21 8.757982 AGTTTGGCATGATAATCTTGTTCTAT 57.242 30.769 0.00 0.00 0.00 1.98
21 22 7.828717 TGAGTTTGGCATGATAATCTTGTTCTA 59.171 33.333 0.00 0.00 0.00 2.10
22 23 6.660521 TGAGTTTGGCATGATAATCTTGTTCT 59.339 34.615 0.00 0.00 0.00 3.01
23 24 6.855836 TGAGTTTGGCATGATAATCTTGTTC 58.144 36.000 0.00 0.00 0.00 3.18
24 25 6.839124 TGAGTTTGGCATGATAATCTTGTT 57.161 33.333 0.00 0.00 0.00 2.83
25 26 6.350445 GGTTGAGTTTGGCATGATAATCTTGT 60.350 38.462 0.00 0.00 0.00 3.16
26 27 6.038356 GGTTGAGTTTGGCATGATAATCTTG 58.962 40.000 0.00 0.00 0.00 3.02
27 28 5.954150 AGGTTGAGTTTGGCATGATAATCTT 59.046 36.000 0.00 0.00 0.00 2.40
28 29 5.513233 AGGTTGAGTTTGGCATGATAATCT 58.487 37.500 0.00 0.00 0.00 2.40
29 30 5.841957 AGGTTGAGTTTGGCATGATAATC 57.158 39.130 0.00 0.00 0.00 1.75
30 31 7.631377 GCTTAAGGTTGAGTTTGGCATGATAAT 60.631 37.037 4.29 0.00 0.00 1.28
31 32 6.350110 GCTTAAGGTTGAGTTTGGCATGATAA 60.350 38.462 4.29 0.00 0.00 1.75
32 33 5.125417 GCTTAAGGTTGAGTTTGGCATGATA 59.875 40.000 4.29 0.00 0.00 2.15
33 34 4.082026 GCTTAAGGTTGAGTTTGGCATGAT 60.082 41.667 4.29 0.00 0.00 2.45
34 35 3.255642 GCTTAAGGTTGAGTTTGGCATGA 59.744 43.478 4.29 0.00 0.00 3.07
35 36 3.578688 GCTTAAGGTTGAGTTTGGCATG 58.421 45.455 4.29 0.00 0.00 4.06
36 37 2.562738 GGCTTAAGGTTGAGTTTGGCAT 59.437 45.455 4.29 0.00 0.00 4.40
37 38 1.960689 GGCTTAAGGTTGAGTTTGGCA 59.039 47.619 4.29 0.00 0.00 4.92
38 39 1.068541 CGGCTTAAGGTTGAGTTTGGC 60.069 52.381 4.29 0.00 0.00 4.52
39 40 1.068541 GCGGCTTAAGGTTGAGTTTGG 60.069 52.381 4.29 0.00 0.00 3.28
40 41 1.606668 TGCGGCTTAAGGTTGAGTTTG 59.393 47.619 4.29 0.00 0.00 2.93
41 42 1.975660 TGCGGCTTAAGGTTGAGTTT 58.024 45.000 4.29 0.00 0.00 2.66
42 43 1.975660 TTGCGGCTTAAGGTTGAGTT 58.024 45.000 4.29 0.00 0.00 3.01
43 44 1.975660 TTTGCGGCTTAAGGTTGAGT 58.024 45.000 4.29 0.00 0.00 3.41
44 45 3.575965 ATTTTGCGGCTTAAGGTTGAG 57.424 42.857 4.29 0.00 0.00 3.02
45 46 6.679392 GCTTATATTTTGCGGCTTAAGGTTGA 60.679 38.462 4.29 0.00 0.00 3.18
46 47 5.458779 GCTTATATTTTGCGGCTTAAGGTTG 59.541 40.000 4.29 0.00 0.00 3.77
47 48 5.126384 TGCTTATATTTTGCGGCTTAAGGTT 59.874 36.000 4.29 0.00 0.00 3.50
48 49 4.642885 TGCTTATATTTTGCGGCTTAAGGT 59.357 37.500 4.29 0.00 0.00 3.50
49 50 5.181690 TGCTTATATTTTGCGGCTTAAGG 57.818 39.130 4.29 0.00 0.00 2.69
50 51 6.360681 GTCATGCTTATATTTTGCGGCTTAAG 59.639 38.462 0.00 0.00 0.00 1.85
51 52 6.183360 TGTCATGCTTATATTTTGCGGCTTAA 60.183 34.615 0.00 0.00 0.00 1.85
52 53 5.298026 TGTCATGCTTATATTTTGCGGCTTA 59.702 36.000 0.00 0.00 0.00 3.09
53 54 4.097741 TGTCATGCTTATATTTTGCGGCTT 59.902 37.500 0.00 0.00 0.00 4.35
54 55 3.631686 TGTCATGCTTATATTTTGCGGCT 59.368 39.130 0.00 0.00 0.00 5.52
55 56 3.963665 TGTCATGCTTATATTTTGCGGC 58.036 40.909 0.00 0.00 0.00 6.53
56 57 6.441274 AGATTGTCATGCTTATATTTTGCGG 58.559 36.000 0.00 0.00 0.00 5.69
57 58 7.919313 AAGATTGTCATGCTTATATTTTGCG 57.081 32.000 0.00 0.00 0.00 4.85
58 59 8.758715 GGAAAGATTGTCATGCTTATATTTTGC 58.241 33.333 0.00 0.00 0.00 3.68
62 63 9.851686 TGTAGGAAAGATTGTCATGCTTATATT 57.148 29.630 0.00 0.00 0.00 1.28
63 64 9.277783 GTGTAGGAAAGATTGTCATGCTTATAT 57.722 33.333 0.00 0.00 0.00 0.86
64 65 8.264347 TGTGTAGGAAAGATTGTCATGCTTATA 58.736 33.333 0.00 0.00 0.00 0.98
65 66 7.112122 TGTGTAGGAAAGATTGTCATGCTTAT 58.888 34.615 0.00 0.00 0.00 1.73
66 67 6.472016 TGTGTAGGAAAGATTGTCATGCTTA 58.528 36.000 0.00 0.00 0.00 3.09
67 68 5.316167 TGTGTAGGAAAGATTGTCATGCTT 58.684 37.500 0.00 0.00 0.00 3.91
68 69 4.910195 TGTGTAGGAAAGATTGTCATGCT 58.090 39.130 0.00 0.00 0.00 3.79
69 70 5.627499 TTGTGTAGGAAAGATTGTCATGC 57.373 39.130 0.00 0.00 0.00 4.06
70 71 7.819644 TGATTTGTGTAGGAAAGATTGTCATG 58.180 34.615 0.00 0.00 0.00 3.07
71 72 8.585471 ATGATTTGTGTAGGAAAGATTGTCAT 57.415 30.769 0.00 0.00 0.00 3.06
72 73 8.298854 CAATGATTTGTGTAGGAAAGATTGTCA 58.701 33.333 0.00 0.00 0.00 3.58
73 74 7.274250 GCAATGATTTGTGTAGGAAAGATTGTC 59.726 37.037 0.00 0.00 35.17 3.18
74 75 7.092716 GCAATGATTTGTGTAGGAAAGATTGT 58.907 34.615 0.00 0.00 35.17 2.71
75 76 7.092079 TGCAATGATTTGTGTAGGAAAGATTG 58.908 34.615 0.00 0.00 35.17 2.67
76 77 7.230849 TGCAATGATTTGTGTAGGAAAGATT 57.769 32.000 0.00 0.00 35.17 2.40
77 78 6.839124 TGCAATGATTTGTGTAGGAAAGAT 57.161 33.333 0.00 0.00 35.17 2.40
78 79 6.647334 TTGCAATGATTTGTGTAGGAAAGA 57.353 33.333 0.00 0.00 35.17 2.52
79 80 7.894376 ATTTGCAATGATTTGTGTAGGAAAG 57.106 32.000 0.00 0.00 35.17 2.62
80 81 8.674263 AAATTTGCAATGATTTGTGTAGGAAA 57.326 26.923 0.00 0.00 35.17 3.13
81 82 7.387397 GGAAATTTGCAATGATTTGTGTAGGAA 59.613 33.333 12.65 0.00 35.17 3.36
82 83 6.873076 GGAAATTTGCAATGATTTGTGTAGGA 59.127 34.615 12.65 0.00 35.17 2.94
83 84 6.649973 TGGAAATTTGCAATGATTTGTGTAGG 59.350 34.615 10.24 0.00 35.17 3.18
84 85 7.655236 TGGAAATTTGCAATGATTTGTGTAG 57.345 32.000 10.24 0.00 35.17 2.74
85 86 7.361031 GCATGGAAATTTGCAATGATTTGTGTA 60.361 33.333 16.71 0.00 35.17 2.90
86 87 6.568844 GCATGGAAATTTGCAATGATTTGTGT 60.569 34.615 16.71 0.00 35.17 3.72
87 88 5.797934 GCATGGAAATTTGCAATGATTTGTG 59.202 36.000 16.71 8.63 35.17 3.33
88 89 5.708230 AGCATGGAAATTTGCAATGATTTGT 59.292 32.000 16.71 0.00 35.17 2.83
89 90 6.189677 AGCATGGAAATTTGCAATGATTTG 57.810 33.333 16.71 10.01 35.85 2.32
90 91 7.107542 AGTAGCATGGAAATTTGCAATGATTT 58.892 30.769 16.71 8.49 30.51 2.17
91 92 6.646267 AGTAGCATGGAAATTTGCAATGATT 58.354 32.000 16.71 9.48 30.51 2.57
92 93 6.229936 AGTAGCATGGAAATTTGCAATGAT 57.770 33.333 16.71 14.93 30.51 2.45
93 94 5.664294 AGTAGCATGGAAATTTGCAATGA 57.336 34.783 16.71 0.07 30.51 2.57
94 95 6.730960 AAAGTAGCATGGAAATTTGCAATG 57.269 33.333 16.71 14.87 30.51 2.82
95 96 6.711645 ACAAAAGTAGCATGGAAATTTGCAAT 59.288 30.769 16.71 8.32 31.34 3.56
96 97 6.054295 ACAAAAGTAGCATGGAAATTTGCAA 58.946 32.000 16.71 0.00 31.34 4.08
97 98 5.609423 ACAAAAGTAGCATGGAAATTTGCA 58.391 33.333 15.13 15.13 31.34 4.08
98 99 6.644592 TGTACAAAAGTAGCATGGAAATTTGC 59.355 34.615 2.22 2.22 31.34 3.68
99 100 8.761575 ATGTACAAAAGTAGCATGGAAATTTG 57.238 30.769 0.00 0.00 33.68 2.32
100 101 8.584157 TGATGTACAAAAGTAGCATGGAAATTT 58.416 29.630 0.00 0.00 0.00 1.82
101 102 8.121305 TGATGTACAAAAGTAGCATGGAAATT 57.879 30.769 0.00 0.00 0.00 1.82
102 103 7.611467 TCTGATGTACAAAAGTAGCATGGAAAT 59.389 33.333 0.00 0.00 0.00 2.17
103 104 6.939730 TCTGATGTACAAAAGTAGCATGGAAA 59.060 34.615 0.00 0.00 0.00 3.13
104 105 6.472016 TCTGATGTACAAAAGTAGCATGGAA 58.528 36.000 0.00 0.00 0.00 3.53
105 106 6.048732 TCTGATGTACAAAAGTAGCATGGA 57.951 37.500 0.00 0.00 0.00 3.41
106 107 6.741992 TTCTGATGTACAAAAGTAGCATGG 57.258 37.500 0.00 0.00 0.00 3.66
107 108 7.977904 TGATTCTGATGTACAAAAGTAGCATG 58.022 34.615 0.00 0.00 0.00 4.06
108 109 8.565896 TTGATTCTGATGTACAAAAGTAGCAT 57.434 30.769 0.00 0.00 0.00 3.79
109 110 7.977789 TTGATTCTGATGTACAAAAGTAGCA 57.022 32.000 0.00 0.67 0.00 3.49
118 119 9.447157 TGTGTTCATATTTGATTCTGATGTACA 57.553 29.630 0.00 0.00 0.00 2.90
119 120 9.708222 GTGTGTTCATATTTGATTCTGATGTAC 57.292 33.333 0.00 0.00 0.00 2.90
120 121 8.892723 GGTGTGTTCATATTTGATTCTGATGTA 58.107 33.333 0.00 0.00 0.00 2.29
121 122 7.613022 AGGTGTGTTCATATTTGATTCTGATGT 59.387 33.333 0.00 0.00 0.00 3.06
122 123 7.993101 AGGTGTGTTCATATTTGATTCTGATG 58.007 34.615 0.00 0.00 0.00 3.07
123 124 9.113838 GTAGGTGTGTTCATATTTGATTCTGAT 57.886 33.333 0.00 0.00 0.00 2.90
124 125 7.552687 GGTAGGTGTGTTCATATTTGATTCTGA 59.447 37.037 0.00 0.00 0.00 3.27
125 126 7.201732 GGGTAGGTGTGTTCATATTTGATTCTG 60.202 40.741 0.00 0.00 0.00 3.02
126 127 6.828785 GGGTAGGTGTGTTCATATTTGATTCT 59.171 38.462 0.00 0.00 0.00 2.40
127 128 6.238374 CGGGTAGGTGTGTTCATATTTGATTC 60.238 42.308 0.00 0.00 0.00 2.52
128 129 5.588648 CGGGTAGGTGTGTTCATATTTGATT 59.411 40.000 0.00 0.00 0.00 2.57
129 130 5.123227 CGGGTAGGTGTGTTCATATTTGAT 58.877 41.667 0.00 0.00 0.00 2.57
130 131 4.020039 ACGGGTAGGTGTGTTCATATTTGA 60.020 41.667 0.00 0.00 0.00 2.69
131 132 4.258543 ACGGGTAGGTGTGTTCATATTTG 58.741 43.478 0.00 0.00 0.00 2.32
132 133 4.563140 ACGGGTAGGTGTGTTCATATTT 57.437 40.909 0.00 0.00 0.00 1.40
133 134 4.563140 AACGGGTAGGTGTGTTCATATT 57.437 40.909 0.00 0.00 0.00 1.28
134 135 5.881923 ATAACGGGTAGGTGTGTTCATAT 57.118 39.130 0.00 0.00 0.00 1.78
135 136 6.779049 AGATATAACGGGTAGGTGTGTTCATA 59.221 38.462 0.00 0.00 0.00 2.15
136 137 5.601313 AGATATAACGGGTAGGTGTGTTCAT 59.399 40.000 0.00 0.00 0.00 2.57
137 138 4.957954 AGATATAACGGGTAGGTGTGTTCA 59.042 41.667 0.00 0.00 0.00 3.18
138 139 5.526506 AGATATAACGGGTAGGTGTGTTC 57.473 43.478 0.00 0.00 0.00 3.18
139 140 7.607615 ATTAGATATAACGGGTAGGTGTGTT 57.392 36.000 0.00 0.00 0.00 3.32
140 141 7.607615 AATTAGATATAACGGGTAGGTGTGT 57.392 36.000 0.00 0.00 0.00 3.72
141 142 8.897872 AAAATTAGATATAACGGGTAGGTGTG 57.102 34.615 0.00 0.00 0.00 3.82
149 150 9.341899 GCTTGCATAAAAATTAGATATAACGGG 57.658 33.333 0.00 0.00 0.00 5.28
150 151 9.891828 TGCTTGCATAAAAATTAGATATAACGG 57.108 29.630 0.00 0.00 0.00 4.44
194 195 9.959749 ACGTTTATTCAACACAAAGTTAATGAT 57.040 25.926 0.00 0.00 38.74 2.45
195 196 9.790389 AACGTTTATTCAACACAAAGTTAATGA 57.210 25.926 0.00 0.00 38.74 2.57
198 199 9.493206 GAGAACGTTTATTCAACACAAAGTTAA 57.507 29.630 0.46 0.00 38.74 2.01
199 200 7.847078 CGAGAACGTTTATTCAACACAAAGTTA 59.153 33.333 0.46 0.00 34.68 2.24
200 201 6.685403 CGAGAACGTTTATTCAACACAAAGTT 59.315 34.615 0.46 0.00 34.68 2.66
201 202 6.189567 CGAGAACGTTTATTCAACACAAAGT 58.810 36.000 0.46 0.00 34.68 2.66
202 203 5.113529 GCGAGAACGTTTATTCAACACAAAG 59.886 40.000 0.46 0.00 41.98 2.77
203 204 4.965158 GCGAGAACGTTTATTCAACACAAA 59.035 37.500 0.46 0.00 41.98 2.83
204 205 4.271533 AGCGAGAACGTTTATTCAACACAA 59.728 37.500 0.46 0.00 41.98 3.33
205 206 3.805422 AGCGAGAACGTTTATTCAACACA 59.195 39.130 0.46 0.00 41.98 3.72
206 207 4.385244 AGCGAGAACGTTTATTCAACAC 57.615 40.909 0.46 0.00 41.98 3.32
207 208 5.693104 AGTAAGCGAGAACGTTTATTCAACA 59.307 36.000 0.46 0.00 44.09 3.33
208 209 6.149504 AGTAAGCGAGAACGTTTATTCAAC 57.850 37.500 0.46 0.00 44.09 3.18
209 210 5.346822 GGAGTAAGCGAGAACGTTTATTCAA 59.653 40.000 17.20 0.00 45.57 2.69
210 211 4.860907 GGAGTAAGCGAGAACGTTTATTCA 59.139 41.667 17.20 0.00 45.57 2.57
211 212 4.860907 TGGAGTAAGCGAGAACGTTTATTC 59.139 41.667 0.46 10.97 44.09 1.75
212 213 4.813027 TGGAGTAAGCGAGAACGTTTATT 58.187 39.130 0.46 0.00 44.09 1.40
213 214 4.445452 TGGAGTAAGCGAGAACGTTTAT 57.555 40.909 0.46 0.00 44.09 1.40
214 215 3.921119 TGGAGTAAGCGAGAACGTTTA 57.079 42.857 0.46 0.00 42.32 2.01
215 216 2.798847 GTTGGAGTAAGCGAGAACGTTT 59.201 45.455 0.46 0.00 44.25 3.60
216 217 2.223876 TGTTGGAGTAAGCGAGAACGTT 60.224 45.455 0.00 0.00 41.98 3.99
217 218 1.338973 TGTTGGAGTAAGCGAGAACGT 59.661 47.619 0.00 0.00 41.98 3.99
218 219 1.719780 GTGTTGGAGTAAGCGAGAACG 59.280 52.381 0.00 0.00 42.93 3.95
219 220 2.067013 GGTGTTGGAGTAAGCGAGAAC 58.933 52.381 0.00 0.00 0.00 3.01
220 221 1.001633 GGGTGTTGGAGTAAGCGAGAA 59.998 52.381 0.00 0.00 0.00 2.87
221 222 0.606604 GGGTGTTGGAGTAAGCGAGA 59.393 55.000 0.00 0.00 0.00 4.04
222 223 0.320374 TGGGTGTTGGAGTAAGCGAG 59.680 55.000 0.00 0.00 0.00 5.03
223 224 0.759959 TTGGGTGTTGGAGTAAGCGA 59.240 50.000 0.00 0.00 0.00 4.93
224 225 1.600023 TTTGGGTGTTGGAGTAAGCG 58.400 50.000 0.00 0.00 0.00 4.68
225 226 3.153919 TGATTTGGGTGTTGGAGTAAGC 58.846 45.455 0.00 0.00 0.00 3.09
226 227 4.651778 TCTGATTTGGGTGTTGGAGTAAG 58.348 43.478 0.00 0.00 0.00 2.34
227 228 4.349636 TCTCTGATTTGGGTGTTGGAGTAA 59.650 41.667 0.00 0.00 0.00 2.24
228 229 3.907474 TCTCTGATTTGGGTGTTGGAGTA 59.093 43.478 0.00 0.00 0.00 2.59
249 250 0.106217 CTCTCCCTCTCCCCACTCTC 60.106 65.000 0.00 0.00 0.00 3.20
254 255 3.368501 CCCCTCTCCCTCTCCCCA 61.369 72.222 0.00 0.00 0.00 4.96
255 256 2.196304 TTTCCCCTCTCCCTCTCCCC 62.196 65.000 0.00 0.00 0.00 4.81
256 257 0.029577 ATTTCCCCTCTCCCTCTCCC 60.030 60.000 0.00 0.00 0.00 4.30
258 259 2.182516 TCATTTCCCCTCTCCCTCTC 57.817 55.000 0.00 0.00 0.00 3.20
259 260 2.668850 TTCATTTCCCCTCTCCCTCT 57.331 50.000 0.00 0.00 0.00 3.69
260 261 2.780010 TGATTCATTTCCCCTCTCCCTC 59.220 50.000 0.00 0.00 0.00 4.30
261 262 2.863884 TGATTCATTTCCCCTCTCCCT 58.136 47.619 0.00 0.00 0.00 4.20
943 948 2.796557 GACCAGAAGGGAAAGAAAGGG 58.203 52.381 0.00 0.00 41.15 3.95
953 958 4.785453 GGCCAGCGACCAGAAGGG 62.785 72.222 0.00 0.00 44.81 3.95
1187 1192 1.213182 TCTCAGGACGAGCATAGGAGT 59.787 52.381 0.00 0.00 41.98 3.85
1198 1203 1.811359 GGGATATACGGTCTCAGGACG 59.189 57.143 0.00 0.00 42.97 4.79
1219 1224 6.942532 TGATAAAATTCCCCGATCTCTTTG 57.057 37.500 0.00 0.00 0.00 2.77
1266 1271 7.425606 TGTTCTAAAAATCAGACAAGAAAGCC 58.574 34.615 0.00 0.00 0.00 4.35
1367 1372 5.990668 ACTTCCCTAACCAGTATAAGCAAG 58.009 41.667 0.00 0.00 0.00 4.01
1415 1428 2.689983 CCACAAGCAGATAACCATTCCC 59.310 50.000 0.00 0.00 0.00 3.97
1444 1457 3.868757 TCTATGAAAGGGTGTCAGACG 57.131 47.619 0.00 0.00 0.00 4.18
1484 1520 1.657804 CACCCTAGAACCAGAACCCT 58.342 55.000 0.00 0.00 0.00 4.34
1485 1521 0.618981 CCACCCTAGAACCAGAACCC 59.381 60.000 0.00 0.00 0.00 4.11
1486 1522 1.003233 CACCACCCTAGAACCAGAACC 59.997 57.143 0.00 0.00 0.00 3.62
1487 1523 1.697982 ACACCACCCTAGAACCAGAAC 59.302 52.381 0.00 0.00 0.00 3.01
1488 1524 1.697432 CACACCACCCTAGAACCAGAA 59.303 52.381 0.00 0.00 0.00 3.02
1489 1525 1.348064 CACACCACCCTAGAACCAGA 58.652 55.000 0.00 0.00 0.00 3.86
1490 1526 0.324943 CCACACCACCCTAGAACCAG 59.675 60.000 0.00 0.00 0.00 4.00
1491 1527 0.400815 ACCACACCACCCTAGAACCA 60.401 55.000 0.00 0.00 0.00 3.67
1492 1528 0.036306 CACCACACCACCCTAGAACC 59.964 60.000 0.00 0.00 0.00 3.62
1493 1529 0.036306 CCACCACACCACCCTAGAAC 59.964 60.000 0.00 0.00 0.00 3.01
1494 1530 0.400815 ACCACCACACCACCCTAGAA 60.401 55.000 0.00 0.00 0.00 2.10
1495 1531 1.125093 CACCACCACACCACCCTAGA 61.125 60.000 0.00 0.00 0.00 2.43
1496 1532 1.374947 CACCACCACACCACCCTAG 59.625 63.158 0.00 0.00 0.00 3.02
1497 1533 2.150719 CCACCACCACACCACCCTA 61.151 63.158 0.00 0.00 0.00 3.53
1498 1534 3.498071 CCACCACCACACCACCCT 61.498 66.667 0.00 0.00 0.00 4.34
1499 1535 3.367907 AACCACCACCACACCACCC 62.368 63.158 0.00 0.00 0.00 4.61
1500 1536 2.124693 CAACCACCACCACACCACC 61.125 63.158 0.00 0.00 0.00 4.61
1501 1537 0.107116 TACAACCACCACCACACCAC 60.107 55.000 0.00 0.00 0.00 4.16
1502 1538 0.181587 CTACAACCACCACCACACCA 59.818 55.000 0.00 0.00 0.00 4.17
1503 1539 0.536460 CCTACAACCACCACCACACC 60.536 60.000 0.00 0.00 0.00 4.16
1504 1540 1.170290 GCCTACAACCACCACCACAC 61.170 60.000 0.00 0.00 0.00 3.82
1505 1541 1.149627 GCCTACAACCACCACCACA 59.850 57.895 0.00 0.00 0.00 4.17
1506 1542 1.602605 GGCCTACAACCACCACCAC 60.603 63.158 0.00 0.00 0.00 4.16
1507 1543 2.079288 TGGCCTACAACCACCACCA 61.079 57.895 3.32 0.00 30.29 4.17
1508 1544 2.840576 TGGCCTACAACCACCACC 59.159 61.111 3.32 0.00 30.29 4.61
1621 1659 8.713737 TGATATTGTCTGACTTGATTGAGAAG 57.286 34.615 9.51 0.00 0.00 2.85
1639 1677 3.853831 TGCAGCACAAACCTGATATTG 57.146 42.857 0.00 0.00 32.03 1.90
1652 1690 4.095334 TCAGATGACACATATTTGCAGCAC 59.905 41.667 0.00 0.00 0.00 4.40
1669 1707 3.972706 AAATCGTTTCGTCGTCAGATG 57.027 42.857 0.00 0.00 34.75 2.90
1670 1708 4.792189 GTCTAAATCGTTTCGTCGTCAGAT 59.208 41.667 0.00 0.00 0.00 2.90
1674 1712 3.236816 TGGTCTAAATCGTTTCGTCGTC 58.763 45.455 0.00 0.00 0.00 4.20
1675 1713 3.287312 TGGTCTAAATCGTTTCGTCGT 57.713 42.857 0.00 0.00 0.00 4.34
1732 1817 8.254508 AGCTTTTCTCCATAGTCTACTAAACTG 58.745 37.037 0.00 0.00 31.39 3.16
1733 1818 8.368962 AGCTTTTCTCCATAGTCTACTAAACT 57.631 34.615 0.00 0.00 31.39 2.66
1740 1825 9.201989 TCAAGATAAGCTTTTCTCCATAGTCTA 57.798 33.333 18.16 0.00 33.60 2.59
1766 1851 9.191995 GTTTCTTGGATTCGAAACAAATACAAT 57.808 29.630 16.25 0.00 45.05 2.71
1784 1869 2.882137 ACGTTACCACCATGTTTCTTGG 59.118 45.455 0.00 1.06 40.26 3.61
1992 2077 2.515854 CCATAGAAGGCGCTAGGTAGA 58.484 52.381 7.64 0.00 0.00 2.59
2001 2086 1.760613 TGACTTACCCCATAGAAGGCG 59.239 52.381 0.00 0.00 30.23 5.52
2040 2125 5.611374 TCTTATATTTCTTTGCGGAGGGAG 58.389 41.667 0.00 0.00 0.00 4.30
2042 2127 4.214332 GCTCTTATATTTCTTTGCGGAGGG 59.786 45.833 0.00 0.00 0.00 4.30
2044 2129 5.525378 ACAGCTCTTATATTTCTTTGCGGAG 59.475 40.000 0.00 0.00 0.00 4.63
2045 2130 5.428253 ACAGCTCTTATATTTCTTTGCGGA 58.572 37.500 0.00 0.00 0.00 5.54
2047 2132 7.222805 TCACTACAGCTCTTATATTTCTTTGCG 59.777 37.037 0.00 0.00 0.00 4.85
2048 2133 8.425577 TCACTACAGCTCTTATATTTCTTTGC 57.574 34.615 0.00 0.00 0.00 3.68
2051 2136 8.928448 TGGATCACTACAGCTCTTATATTTCTT 58.072 33.333 0.00 0.00 0.00 2.52
2053 2138 9.547753 TTTGGATCACTACAGCTCTTATATTTC 57.452 33.333 0.00 0.00 0.00 2.17
2054 2139 9.331282 GTTTGGATCACTACAGCTCTTATATTT 57.669 33.333 0.00 0.00 0.00 1.40
2055 2140 7.653713 CGTTTGGATCACTACAGCTCTTATATT 59.346 37.037 0.00 0.00 0.00 1.28
2056 2141 7.148641 CGTTTGGATCACTACAGCTCTTATAT 58.851 38.462 0.00 0.00 0.00 0.86
2057 2142 6.504398 CGTTTGGATCACTACAGCTCTTATA 58.496 40.000 0.00 0.00 0.00 0.98
2061 2146 2.675317 GCGTTTGGATCACTACAGCTCT 60.675 50.000 0.00 0.00 0.00 4.09
2062 2147 1.661112 GCGTTTGGATCACTACAGCTC 59.339 52.381 0.00 0.00 0.00 4.09
2065 2150 3.182967 GAGAGCGTTTGGATCACTACAG 58.817 50.000 0.00 0.00 32.03 2.74
2069 2154 4.679373 ATATGAGAGCGTTTGGATCACT 57.321 40.909 0.00 0.00 32.03 3.41
2070 2155 5.525378 AGAAATATGAGAGCGTTTGGATCAC 59.475 40.000 0.00 0.00 32.03 3.06
2072 2157 6.610741 AAGAAATATGAGAGCGTTTGGATC 57.389 37.500 0.00 0.00 0.00 3.36
2073 2158 7.254455 CGTAAAGAAATATGAGAGCGTTTGGAT 60.254 37.037 0.00 0.00 0.00 3.41
2074 2159 6.035650 CGTAAAGAAATATGAGAGCGTTTGGA 59.964 38.462 0.00 0.00 0.00 3.53
2075 2160 6.185399 CGTAAAGAAATATGAGAGCGTTTGG 58.815 40.000 0.00 0.00 0.00 3.28
2078 2163 5.657474 TCCGTAAAGAAATATGAGAGCGTT 58.343 37.500 0.00 0.00 0.00 4.84
2079 2164 5.258456 TCCGTAAAGAAATATGAGAGCGT 57.742 39.130 0.00 0.00 0.00 5.07
2080 2165 4.681942 CCTCCGTAAAGAAATATGAGAGCG 59.318 45.833 0.00 0.00 0.00 5.03
2081 2166 4.991687 CCCTCCGTAAAGAAATATGAGAGC 59.008 45.833 0.00 0.00 0.00 4.09
2082 2167 6.041069 ACTCCCTCCGTAAAGAAATATGAGAG 59.959 42.308 0.00 0.00 0.00 3.20
2083 2168 5.897824 ACTCCCTCCGTAAAGAAATATGAGA 59.102 40.000 0.00 0.00 0.00 3.27
2087 2186 8.711170 TCAAATACTCCCTCCGTAAAGAAATAT 58.289 33.333 0.00 0.00 0.00 1.28
2089 2188 6.954232 TCAAATACTCCCTCCGTAAAGAAAT 58.046 36.000 0.00 0.00 0.00 2.17
2091 2190 6.555463 ATCAAATACTCCCTCCGTAAAGAA 57.445 37.500 0.00 0.00 0.00 2.52
2093 2192 5.007724 GCAATCAAATACTCCCTCCGTAAAG 59.992 44.000 0.00 0.00 0.00 1.85
2098 2197 2.874701 CAGCAATCAAATACTCCCTCCG 59.125 50.000 0.00 0.00 0.00 4.63
2099 2198 2.620585 GCAGCAATCAAATACTCCCTCC 59.379 50.000 0.00 0.00 0.00 4.30
2113 2212 3.587797 CTGTGGAGAAAATGCAGCAAT 57.412 42.857 0.00 0.00 0.00 3.56
2140 2252 5.360714 GGAAACAAGATGATCCATTTAGGCA 59.639 40.000 0.00 0.00 37.29 4.75
2153 2265 5.413833 ACATACAAGCAGAGGAAACAAGATG 59.586 40.000 0.00 0.00 0.00 2.90
2154 2266 5.564550 ACATACAAGCAGAGGAAACAAGAT 58.435 37.500 0.00 0.00 0.00 2.40
2292 2404 0.538977 TTCCTCGACGGACTGAAGGT 60.539 55.000 3.44 0.00 42.97 3.50
2320 2432 2.500582 GCTTGCAAGAACGCGCTC 60.501 61.111 30.39 2.65 33.35 5.03
2347 2459 6.798315 CTGATATCTAAATTGTCAGCCAGG 57.202 41.667 3.98 0.00 31.10 4.45
2389 2501 0.460987 AGACTAATGCTGCGAGTGCC 60.461 55.000 6.42 0.00 41.78 5.01
2429 2541 1.103803 TACTGAGGCCGCTTCTAGTG 58.896 55.000 8.34 2.52 0.00 2.74
2604 2726 1.516603 GCACTCCTCGGCGTAGTTC 60.517 63.158 6.85 0.21 0.00 3.01
2673 2795 4.700365 CGCGTCACCGAGAGCACA 62.700 66.667 0.00 0.00 35.78 4.57
3235 3370 1.737793 CTACAAAAACTGCCGGGCTAG 59.262 52.381 21.46 17.29 0.00 3.42
3285 3421 2.472695 ATAACAGCAACGGCAAGAGA 57.527 45.000 0.00 0.00 44.61 3.10
3286 3422 2.855180 CAATAACAGCAACGGCAAGAG 58.145 47.619 0.00 0.00 44.61 2.85
3287 3423 1.068610 GCAATAACAGCAACGGCAAGA 60.069 47.619 0.00 0.00 44.61 3.02
3288 3424 1.068333 AGCAATAACAGCAACGGCAAG 60.068 47.619 0.00 0.00 44.61 4.01
3289 3425 0.958091 AGCAATAACAGCAACGGCAA 59.042 45.000 0.00 0.00 44.61 4.52
3291 3427 0.521291 TGAGCAATAACAGCAACGGC 59.479 50.000 0.00 0.00 41.61 5.68
3292 3428 1.464023 CGTGAGCAATAACAGCAACGG 60.464 52.381 0.00 0.00 39.26 4.44
3293 3429 1.869503 CGTGAGCAATAACAGCAACG 58.130 50.000 0.00 0.00 37.75 4.10
3361 3517 1.895798 TCGAGTTGACCAGAGCTCAAT 59.104 47.619 17.77 0.00 30.46 2.57
3362 3518 1.328279 TCGAGTTGACCAGAGCTCAA 58.672 50.000 17.77 0.00 0.00 3.02
3363 3519 1.550327 ATCGAGTTGACCAGAGCTCA 58.450 50.000 17.77 0.00 0.00 4.26
3365 3521 1.895798 TGAATCGAGTTGACCAGAGCT 59.104 47.619 0.00 0.00 0.00 4.09
3412 3603 3.276846 GCAAGTGGCAACGGACGT 61.277 61.111 0.00 0.00 43.97 4.34
3426 3617 7.754851 TTATATCTCTACTCATACGTGGCAA 57.245 36.000 0.00 0.00 0.00 4.52
3428 3619 9.640963 AATTTTATATCTCTACTCATACGTGGC 57.359 33.333 0.00 0.00 0.00 5.01
3494 3685 8.818057 CGATCCTAATTTTTCACGAAGAGTTAT 58.182 33.333 0.00 0.00 0.00 1.89
3504 3695 6.785191 TGAAGCATCGATCCTAATTTTTCAC 58.215 36.000 0.00 0.00 0.00 3.18
3520 3711 7.153315 TGATCTCTAGTTGATGATGAAGCATC 58.847 38.462 1.60 1.60 43.84 3.91
3535 3747 6.237901 CACCTGCTACTCTATGATCTCTAGT 58.762 44.000 0.00 0.00 0.00 2.57
3569 3781 3.406764 AGTCTTGTCTGGCTTCATTCAC 58.593 45.455 0.00 0.00 0.00 3.18
3570 3782 3.777106 AGTCTTGTCTGGCTTCATTCA 57.223 42.857 0.00 0.00 0.00 2.57
3571 3783 4.094146 GCTAAGTCTTGTCTGGCTTCATTC 59.906 45.833 0.00 0.00 0.00 2.67
3572 3784 4.006319 GCTAAGTCTTGTCTGGCTTCATT 58.994 43.478 0.00 0.00 0.00 2.57
3584 3796 4.978083 TTACCTCTACCGCTAAGTCTTG 57.022 45.455 0.00 0.00 0.00 3.02
3600 3812 7.402862 AGTGGTATGTTCTGCTAAATTTACCT 58.597 34.615 0.00 0.00 31.30 3.08
3613 3825 4.456222 CGGATCGAGATAGTGGTATGTTCT 59.544 45.833 0.00 0.00 0.00 3.01
3696 3908 1.338200 GCTGTGGGTTAGGTGAGTGAG 60.338 57.143 0.00 0.00 0.00 3.51
3697 3909 0.685097 GCTGTGGGTTAGGTGAGTGA 59.315 55.000 0.00 0.00 0.00 3.41
3698 3910 0.687354 AGCTGTGGGTTAGGTGAGTG 59.313 55.000 0.00 0.00 0.00 3.51
3699 3911 0.977395 GAGCTGTGGGTTAGGTGAGT 59.023 55.000 0.00 0.00 0.00 3.41
3731 3944 2.559668 TGACGACTAGGGGTTGTGTTAG 59.440 50.000 0.00 0.00 42.21 2.34
3732 3945 2.596346 TGACGACTAGGGGTTGTGTTA 58.404 47.619 0.00 0.00 42.21 2.41
3736 3949 2.005370 TCTTGACGACTAGGGGTTGT 57.995 50.000 0.00 0.00 44.62 3.32
3740 3953 6.163135 AGAATTATTCTTGACGACTAGGGG 57.837 41.667 0.99 0.00 36.36 4.79
3757 3970 5.659971 AGGCTTCGGAAAGGTAGTAGAATTA 59.340 40.000 0.00 0.00 32.79 1.40
3766 3979 1.640917 AGACAGGCTTCGGAAAGGTA 58.359 50.000 0.00 0.00 32.79 3.08
3767 3980 0.765510 AAGACAGGCTTCGGAAAGGT 59.234 50.000 0.00 0.00 32.79 3.50
3768 3981 1.807142 GAAAGACAGGCTTCGGAAAGG 59.193 52.381 0.00 0.00 35.24 3.11
3769 3982 2.494059 TGAAAGACAGGCTTCGGAAAG 58.506 47.619 0.00 0.00 35.24 2.62
3770 3983 2.631160 TGAAAGACAGGCTTCGGAAA 57.369 45.000 0.00 0.00 35.24 3.13
3771 3984 2.859165 ATGAAAGACAGGCTTCGGAA 57.141 45.000 0.00 0.00 35.24 4.30
3772 3985 3.973206 TTATGAAAGACAGGCTTCGGA 57.027 42.857 0.00 0.00 35.24 4.55
3773 3986 4.878397 AGATTTATGAAAGACAGGCTTCGG 59.122 41.667 0.00 0.00 35.24 4.30
3774 3987 5.582269 TCAGATTTATGAAAGACAGGCTTCG 59.418 40.000 0.00 0.00 35.24 3.79
3775 3988 6.992063 TCAGATTTATGAAAGACAGGCTTC 57.008 37.500 0.00 0.00 35.24 3.86
3776 3989 7.114754 TCATCAGATTTATGAAAGACAGGCTT 58.885 34.615 0.00 0.00 38.88 4.35
3777 3990 6.656902 TCATCAGATTTATGAAAGACAGGCT 58.343 36.000 0.00 0.00 30.52 4.58
3778 3991 6.765036 TCTCATCAGATTTATGAAAGACAGGC 59.235 38.462 0.00 0.00 33.13 4.85
3779 3992 7.767659 TGTCTCATCAGATTTATGAAAGACAGG 59.232 37.037 14.61 0.00 43.64 4.00
3780 3993 8.602328 GTGTCTCATCAGATTTATGAAAGACAG 58.398 37.037 17.16 0.00 46.08 3.51
3781 3994 7.550551 GGTGTCTCATCAGATTTATGAAAGACA 59.449 37.037 14.61 14.61 44.84 3.41
3782 3995 7.768120 AGGTGTCTCATCAGATTTATGAAAGAC 59.232 37.037 11.29 11.29 41.64 3.01
3783 3996 7.855375 AGGTGTCTCATCAGATTTATGAAAGA 58.145 34.615 0.00 0.00 33.13 2.52
3805 4035 1.470098 CGCTGCAGCTGATTTTTAGGT 59.530 47.619 34.22 0.00 39.32 3.08
3864 4094 1.416030 TCTGGACTTTGCAGCTGTGTA 59.584 47.619 16.64 0.00 35.65 2.90
3953 4190 2.935849 CGCTGTATGGCTCAATACAACA 59.064 45.455 8.20 0.00 41.33 3.33
3954 4191 3.001330 GTCGCTGTATGGCTCAATACAAC 59.999 47.826 8.20 4.45 41.33 3.32
3955 4192 3.194861 GTCGCTGTATGGCTCAATACAA 58.805 45.455 8.20 0.00 41.33 2.41
4021 4270 3.695606 TCACCTGACTGGCCGAGC 61.696 66.667 0.00 0.00 40.22 5.03
4061 4317 4.447138 AACCATTTGACTCTTGTGGGTA 57.553 40.909 0.00 0.00 34.27 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.