Multiple sequence alignment - TraesCS1A01G077200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G077200 chr1A 100.000 4337 0 0 1 4337 59860679 59856343 0.000000e+00 8010.0
1 TraesCS1A01G077200 chr1A 96.020 201 8 0 4081 4281 59850204 59850004 1.160000e-85 327.0
2 TraesCS1A01G077200 chr1A 100.000 58 0 0 3756 3813 59856896 59856839 1.650000e-19 108.0
3 TraesCS1A01G077200 chr1A 100.000 58 0 0 3784 3841 59856924 59856867 1.650000e-19 108.0
4 TraesCS1A01G077200 chr1A 100.000 30 0 0 3756 3785 59856868 59856839 6.060000e-04 56.5
5 TraesCS1A01G077200 chr1A 100.000 30 0 0 3812 3841 59856924 59856895 6.060000e-04 56.5
6 TraesCS1A01G077200 chr1D 96.108 3803 113 24 1 3785 61948297 61944512 0.000000e+00 6170.0
7 TraesCS1A01G077200 chr1D 97.590 83 2 0 3812 3894 61944541 61944459 4.520000e-30 143.0
8 TraesCS1A01G077200 chr1D 100.000 30 0 0 3784 3813 61944541 61944512 6.060000e-04 56.5
9 TraesCS1A01G077200 chr1B 92.724 2364 136 15 1466 3813 98724136 98721793 0.000000e+00 3380.0
10 TraesCS1A01G077200 chr1B 90.553 1482 85 23 1 1469 98725635 98724196 0.000000e+00 1910.0
11 TraesCS1A01G077200 chr1B 97.222 36 1 0 3750 3785 98721828 98721793 1.300000e-05 62.1
12 TraesCS1A01G077200 chrUn 96.400 250 8 1 4078 4327 305394702 305394950 1.120000e-110 411.0
13 TraesCS1A01G077200 chrUn 96.400 250 8 1 4078 4327 350228903 350229151 1.120000e-110 411.0
14 TraesCS1A01G077200 chrUn 96.000 250 9 1 4078 4327 372808077 372807829 5.220000e-109 405.0
15 TraesCS1A01G077200 chrUn 87.295 244 26 5 4076 4318 48439725 48439964 1.540000e-69 274.0
16 TraesCS1A01G077200 chr7A 95.600 250 10 1 4078 4327 56032644 56032396 2.430000e-107 399.0
17 TraesCS1A01G077200 chr7A 98.485 198 2 1 4078 4275 56015753 56015557 8.930000e-92 348.0
18 TraesCS1A01G077200 chr6D 89.823 226 18 4 4089 4314 145758637 145758417 7.100000e-73 285.0
19 TraesCS1A01G077200 chr2A 87.029 239 26 4 4080 4318 123137584 123137817 9.250000e-67 265.0
20 TraesCS1A01G077200 chr4A 89.231 65 7 0 4254 4318 186673644 186673580 1.000000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G077200 chr1A 59856343 59860679 4336 True 1667.800000 8010 100.000000 1 4337 5 chr1A.!!$R2 4336
1 TraesCS1A01G077200 chr1D 61944459 61948297 3838 True 2123.166667 6170 97.899333 1 3894 3 chr1D.!!$R1 3893
2 TraesCS1A01G077200 chr1B 98721793 98725635 3842 True 1784.033333 3380 93.499667 1 3813 3 chr1B.!!$R1 3812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 0.034477 AATTCGGGCATCCTCCGTTT 60.034 50.000 2.42 0.0 46.82 3.60 F
235 236 0.034477 ATTCGGGCATCCTCCGTTTT 60.034 50.000 2.42 0.0 46.82 2.43 F
442 451 0.035915 GTCCTCTTGCTGGGTTCTCC 60.036 60.000 0.00 0.0 0.00 3.71 F
739 753 0.036010 CACCGAGAACAGGCTCCAAT 60.036 55.000 0.00 0.0 0.00 3.16 F
740 754 0.250513 ACCGAGAACAGGCTCCAATC 59.749 55.000 0.00 0.0 0.00 2.67 F
742 756 1.065854 CCGAGAACAGGCTCCAATCTT 60.066 52.381 0.00 0.0 0.00 2.40 F
2122 2208 1.632920 TGCCAGGTGAATCCACATACA 59.367 47.619 0.00 0.0 44.93 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 1215 2.180086 ACTATATCCTCAGGGTCCTGCA 59.820 50.000 11.95 0.00 43.31 4.41 R
1514 1598 2.731572 AGTTGGAGCCATCAGGAATTG 58.268 47.619 0.86 0.00 36.89 2.32 R
1577 1661 3.492829 CCTTCTTTATAGCCACCGTCTCC 60.493 52.174 0.00 0.00 0.00 3.71 R
2468 2554 4.649674 TCGCCAGGGAATATAGGCTATTAG 59.350 45.833 13.08 0.00 44.85 1.73 R
2708 2794 7.657354 GCTTTGATTTGTGGGAATTTAAACTCT 59.343 33.333 0.00 0.00 0.00 3.24 R
2769 2855 7.721402 TGAAGCCTTAGAAGCAAATAAAACAA 58.279 30.769 0.00 0.00 0.00 2.83 R
4020 4116 0.110823 CGCCAAAAGTAGCACGTGAC 60.111 55.000 22.23 9.77 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 196 2.824489 GCAGGCCGGCCTTCTTAC 60.824 66.667 45.58 26.74 45.70 2.34
217 218 5.593679 CCCGGTAGGTAATCGATATCAAT 57.406 43.478 0.00 0.00 35.12 2.57
218 219 5.974108 CCCGGTAGGTAATCGATATCAATT 58.026 41.667 0.00 0.00 35.12 2.32
219 220 6.040878 CCCGGTAGGTAATCGATATCAATTC 58.959 44.000 0.00 0.00 35.12 2.17
220 221 5.742453 CCGGTAGGTAATCGATATCAATTCG 59.258 44.000 0.00 0.00 37.94 3.34
221 222 5.742453 CGGTAGGTAATCGATATCAATTCGG 59.258 44.000 0.00 0.00 37.22 4.30
222 223 6.040878 GGTAGGTAATCGATATCAATTCGGG 58.959 44.000 0.00 0.00 37.22 5.14
223 224 4.504858 AGGTAATCGATATCAATTCGGGC 58.495 43.478 0.00 0.00 37.22 6.13
224 225 4.020573 AGGTAATCGATATCAATTCGGGCA 60.021 41.667 0.00 0.00 37.22 5.36
225 226 4.876107 GGTAATCGATATCAATTCGGGCAT 59.124 41.667 0.00 0.00 37.22 4.40
226 227 5.006746 GGTAATCGATATCAATTCGGGCATC 59.993 44.000 0.00 0.00 37.22 3.91
227 228 2.972625 TCGATATCAATTCGGGCATCC 58.027 47.619 3.12 0.00 37.22 3.51
228 229 2.567169 TCGATATCAATTCGGGCATCCT 59.433 45.455 3.12 0.00 37.22 3.24
230 231 2.859165 TATCAATTCGGGCATCCTCC 57.141 50.000 0.00 0.00 0.00 4.30
233 234 0.748005 CAATTCGGGCATCCTCCGTT 60.748 55.000 2.42 0.00 46.82 4.44
234 235 0.034477 AATTCGGGCATCCTCCGTTT 60.034 50.000 2.42 0.00 46.82 3.60
235 236 0.034477 ATTCGGGCATCCTCCGTTTT 60.034 50.000 2.42 0.00 46.82 2.43
236 237 0.675522 TTCGGGCATCCTCCGTTTTC 60.676 55.000 2.42 0.00 46.82 2.29
429 438 0.820871 GGAGCTCGATTGTGTCCTCT 59.179 55.000 7.83 0.00 0.00 3.69
442 451 0.035915 GTCCTCTTGCTGGGTTCTCC 60.036 60.000 0.00 0.00 0.00 3.71
471 481 2.649312 TGAATGTCTTGGATTGGAGGGT 59.351 45.455 0.00 0.00 0.00 4.34
491 501 0.994247 AGTTGGTGAGGATGGATGCA 59.006 50.000 0.00 0.00 0.00 3.96
508 518 2.111041 GCAGGCTTCGATGCAAATAC 57.889 50.000 22.93 6.96 42.11 1.89
546 556 7.319380 TCGAGAATTGTGTCGTTTTTAATTTCG 59.681 33.333 0.00 0.00 41.15 3.46
591 601 1.429463 GAGACGCGAATTGGTCAACT 58.571 50.000 15.93 0.00 35.63 3.16
639 651 1.625315 AGTTGCTGAGTATGTCCTGCA 59.375 47.619 0.00 0.00 33.49 4.41
656 668 5.293079 GTCCTGCATGATCAGACTTTTAGAC 59.707 44.000 0.09 0.00 36.19 2.59
704 718 5.239306 CAGTCTAATTTTCTGGCTTGTGACA 59.761 40.000 0.00 0.00 0.00 3.58
708 722 5.596836 AATTTTCTGGCTTGTGACAAGAA 57.403 34.783 27.97 14.16 0.00 2.52
713 727 1.064758 TGGCTTGTGACAAGAACTGGT 60.065 47.619 27.97 0.00 0.00 4.00
736 750 2.266055 CCACCGAGAACAGGCTCC 59.734 66.667 0.00 0.00 0.00 4.70
737 751 2.583441 CCACCGAGAACAGGCTCCA 61.583 63.158 0.00 0.00 0.00 3.86
738 752 1.371183 CACCGAGAACAGGCTCCAA 59.629 57.895 0.00 0.00 0.00 3.53
739 753 0.036010 CACCGAGAACAGGCTCCAAT 60.036 55.000 0.00 0.00 0.00 3.16
740 754 0.250513 ACCGAGAACAGGCTCCAATC 59.749 55.000 0.00 0.00 0.00 2.67
742 756 1.065854 CCGAGAACAGGCTCCAATCTT 60.066 52.381 0.00 0.00 0.00 2.40
743 757 2.005451 CGAGAACAGGCTCCAATCTTG 58.995 52.381 0.00 0.00 0.00 3.02
757 773 3.703052 CCAATCTTGCTAGGAATTTGGCT 59.297 43.478 19.19 0.00 0.00 4.75
790 806 5.507650 GGCGTTGGGAGTGTAAAATTACAAA 60.508 40.000 7.53 0.00 44.46 2.83
882 898 5.896073 ATTATCCTGGTCACCTCCTTTAG 57.104 43.478 0.00 0.00 0.00 1.85
883 899 3.491766 ATCCTGGTCACCTCCTTTAGA 57.508 47.619 0.00 0.00 0.00 2.10
1196 1215 8.137437 CAGTTCCTAATTTTGTGTCTGAACAAT 58.863 33.333 0.00 0.00 39.68 2.71
1304 1323 5.405269 GGCAAGCAAAACAGGTATGTAAAAG 59.595 40.000 0.00 0.00 39.29 2.27
1577 1661 2.814336 GGCTAAGTGTCTTGAAACTGGG 59.186 50.000 0.00 0.00 0.00 4.45
1859 1943 3.006110 TCATGCTCTTTTCCTGCCAAAAG 59.994 43.478 6.37 6.37 42.49 2.27
2122 2208 1.632920 TGCCAGGTGAATCCACATACA 59.367 47.619 0.00 0.00 44.93 2.29
2208 2294 1.662517 TCACACTTGCACGACATTGT 58.337 45.000 0.00 0.00 0.00 2.71
2392 2478 5.399991 TGAACTCCTTCTAGGACAGGTAAA 58.600 41.667 0.00 0.00 40.06 2.01
2468 2554 5.062528 CAGCCTAAGATCCATTCTCTTTCC 58.937 45.833 0.00 0.00 34.81 3.13
2579 2665 8.413229 AGTTGCTGTCTGTTTAATTGTATTTGT 58.587 29.630 0.00 0.00 0.00 2.83
2806 2892 9.495572 GCTTCTAAGGCTTCAGTATAACATTAT 57.504 33.333 1.30 0.00 0.00 1.28
3178 3273 5.354234 CCCATGGTTAGTCTACAACATCAAC 59.646 44.000 11.73 0.00 0.00 3.18
3179 3274 6.173339 CCATGGTTAGTCTACAACATCAACT 58.827 40.000 2.57 0.00 0.00 3.16
3180 3275 6.313905 CCATGGTTAGTCTACAACATCAACTC 59.686 42.308 2.57 0.00 0.00 3.01
3181 3276 5.466819 TGGTTAGTCTACAACATCAACTCG 58.533 41.667 0.00 0.00 0.00 4.18
3182 3277 4.326548 GGTTAGTCTACAACATCAACTCGC 59.673 45.833 0.00 0.00 0.00 5.03
3183 3278 3.660501 AGTCTACAACATCAACTCGCA 57.339 42.857 0.00 0.00 0.00 5.10
3192 3287 0.526211 ATCAACTCGCACTCGCACTA 59.474 50.000 0.00 0.00 38.40 2.74
3270 3365 2.281484 GAGTTGAAGGGCGTGCCA 60.281 61.111 13.76 0.00 37.98 4.92
3405 3500 3.094572 CGTCTACTAGAAACCCCAGGAA 58.905 50.000 0.00 0.00 0.00 3.36
3647 3743 4.580580 GGTCCAGTATTTGTTCATGGATCC 59.419 45.833 4.20 4.20 41.81 3.36
3748 3844 4.273480 ACTGAACAAGTTGACAAATCCTCG 59.727 41.667 10.54 0.00 34.57 4.63
3762 3858 3.611766 ATCCTCGGAACCACTAAGTTG 57.388 47.619 0.00 0.00 0.00 3.16
3765 3861 2.806244 CCTCGGAACCACTAAGTTGTTG 59.194 50.000 0.00 0.00 0.00 3.33
3766 3862 3.493699 CCTCGGAACCACTAAGTTGTTGA 60.494 47.826 0.00 0.00 0.00 3.18
3767 3863 4.124238 CTCGGAACCACTAAGTTGTTGAA 58.876 43.478 0.00 0.00 0.00 2.69
3768 3864 3.872771 TCGGAACCACTAAGTTGTTGAAC 59.127 43.478 0.00 0.00 0.00 3.18
3784 3880 6.346477 TGTTGAACTTGAGTAGATACTGCT 57.654 37.500 0.00 0.00 36.50 4.24
3786 3882 7.892609 TGTTGAACTTGAGTAGATACTGCTAA 58.107 34.615 0.00 0.00 36.50 3.09
3787 3883 8.029522 TGTTGAACTTGAGTAGATACTGCTAAG 58.970 37.037 0.00 2.79 36.50 2.18
3788 3884 7.704578 TGAACTTGAGTAGATACTGCTAAGT 57.295 36.000 0.00 3.35 40.67 2.24
3789 3885 8.123639 TGAACTTGAGTAGATACTGCTAAGTT 57.876 34.615 17.58 17.58 40.40 2.66
3790 3886 8.029522 TGAACTTGAGTAGATACTGCTAAGTTG 58.970 37.037 20.14 3.42 39.26 3.16
3791 3887 7.469537 ACTTGAGTAGATACTGCTAAGTTGT 57.530 36.000 0.00 0.00 37.88 3.32
3792 3888 7.897864 ACTTGAGTAGATACTGCTAAGTTGTT 58.102 34.615 0.00 0.00 37.88 2.83
3793 3889 7.815068 ACTTGAGTAGATACTGCTAAGTTGTTG 59.185 37.037 0.00 0.00 37.88 3.33
3794 3890 7.462571 TGAGTAGATACTGCTAAGTTGTTGA 57.537 36.000 0.00 0.00 37.88 3.18
3795 3891 7.892609 TGAGTAGATACTGCTAAGTTGTTGAA 58.107 34.615 0.00 0.00 37.88 2.69
3796 3892 7.813148 TGAGTAGATACTGCTAAGTTGTTGAAC 59.187 37.037 0.00 0.00 37.88 3.18
3797 3893 7.897864 AGTAGATACTGCTAAGTTGTTGAACT 58.102 34.615 0.00 0.00 38.43 3.01
3798 3894 8.368668 AGTAGATACTGCTAAGTTGTTGAACTT 58.631 33.333 5.57 5.57 43.46 2.66
3858 3954 1.676014 GCTGCCTCGTGTTTGTATCCT 60.676 52.381 0.00 0.00 0.00 3.24
3869 3965 5.351465 CGTGTTTGTATCCTAGCAAATCAGT 59.649 40.000 0.00 0.00 37.02 3.41
3894 3990 2.172293 AGGGCCTGCATTCTCTTAAGAG 59.828 50.000 24.10 24.10 43.36 2.85
3895 3991 1.946081 GGCCTGCATTCTCTTAAGAGC 59.054 52.381 25.04 15.94 41.80 4.09
3896 3992 2.636830 GCCTGCATTCTCTTAAGAGCA 58.363 47.619 25.04 19.26 41.80 4.26
3897 3993 3.212685 GCCTGCATTCTCTTAAGAGCAT 58.787 45.455 25.04 18.31 41.80 3.79
3898 3994 3.250521 GCCTGCATTCTCTTAAGAGCATC 59.749 47.826 25.04 14.71 41.80 3.91
3910 4006 2.378028 GAGCATCTCCAACAGTCGC 58.622 57.895 0.00 0.00 0.00 5.19
3911 4007 1.416813 GAGCATCTCCAACAGTCGCG 61.417 60.000 0.00 0.00 0.00 5.87
3912 4008 3.084579 CATCTCCAACAGTCGCGC 58.915 61.111 0.00 0.00 0.00 6.86
3913 4009 2.125512 ATCTCCAACAGTCGCGCC 60.126 61.111 0.00 0.00 0.00 6.53
3914 4010 2.942796 ATCTCCAACAGTCGCGCCA 61.943 57.895 0.00 0.00 0.00 5.69
3915 4011 2.449031 ATCTCCAACAGTCGCGCCAA 62.449 55.000 0.00 0.00 0.00 4.52
3916 4012 2.664851 TCCAACAGTCGCGCCAAG 60.665 61.111 0.00 0.00 0.00 3.61
3917 4013 2.664851 CCAACAGTCGCGCCAAGA 60.665 61.111 0.00 0.00 0.00 3.02
3918 4014 2.671177 CCAACAGTCGCGCCAAGAG 61.671 63.158 0.00 0.00 0.00 2.85
3919 4015 1.664649 CAACAGTCGCGCCAAGAGA 60.665 57.895 0.00 0.00 0.00 3.10
3939 4035 4.067016 CGCGCGCGGTAAACTTGT 62.067 61.111 43.28 0.00 35.56 3.16
3940 4036 2.250190 GCGCGCGGTAAACTTGTT 59.750 55.556 33.06 0.00 0.00 2.83
3941 4037 1.790896 GCGCGCGGTAAACTTGTTC 60.791 57.895 33.06 5.84 0.00 3.18
3942 4038 1.857364 CGCGCGGTAAACTTGTTCT 59.143 52.632 24.84 0.00 0.00 3.01
3943 4039 0.233848 CGCGCGGTAAACTTGTTCTT 59.766 50.000 24.84 0.00 0.00 2.52
3944 4040 1.333435 CGCGCGGTAAACTTGTTCTTT 60.333 47.619 24.84 0.00 0.00 2.52
3945 4041 2.096811 CGCGCGGTAAACTTGTTCTTTA 60.097 45.455 24.84 0.00 0.00 1.85
3946 4042 3.476181 GCGCGGTAAACTTGTTCTTTAG 58.524 45.455 8.83 0.00 0.00 1.85
3947 4043 3.059393 GCGCGGTAAACTTGTTCTTTAGT 60.059 43.478 8.83 0.00 0.00 2.24
3948 4044 4.451557 CGCGGTAAACTTGTTCTTTAGTG 58.548 43.478 0.00 0.00 0.00 2.74
3949 4045 4.216731 GCGGTAAACTTGTTCTTTAGTGC 58.783 43.478 0.00 0.00 0.00 4.40
3950 4046 4.260866 GCGGTAAACTTGTTCTTTAGTGCA 60.261 41.667 0.00 0.00 0.00 4.57
3951 4047 5.562113 GCGGTAAACTTGTTCTTTAGTGCAT 60.562 40.000 0.00 0.00 0.00 3.96
3952 4048 5.851177 CGGTAAACTTGTTCTTTAGTGCATG 59.149 40.000 0.00 0.00 0.00 4.06
3953 4049 5.629435 GGTAAACTTGTTCTTTAGTGCATGC 59.371 40.000 11.82 11.82 0.00 4.06
3954 4050 5.520376 AAACTTGTTCTTTAGTGCATGCT 57.480 34.783 20.33 1.26 0.00 3.79
3955 4051 4.494350 ACTTGTTCTTTAGTGCATGCTG 57.506 40.909 20.33 2.46 0.00 4.41
3956 4052 3.254166 ACTTGTTCTTTAGTGCATGCTGG 59.746 43.478 20.33 2.83 0.00 4.85
3957 4053 3.138884 TGTTCTTTAGTGCATGCTGGA 57.861 42.857 20.33 0.07 0.00 3.86
3958 4054 3.689347 TGTTCTTTAGTGCATGCTGGAT 58.311 40.909 20.33 4.55 0.00 3.41
3959 4055 3.441222 TGTTCTTTAGTGCATGCTGGATG 59.559 43.478 20.33 4.63 34.84 3.51
3960 4056 2.646930 TCTTTAGTGCATGCTGGATGG 58.353 47.619 20.33 5.64 31.99 3.51
3961 4057 2.025981 TCTTTAGTGCATGCTGGATGGT 60.026 45.455 20.33 0.00 31.99 3.55
3962 4058 2.512692 TTAGTGCATGCTGGATGGTT 57.487 45.000 20.33 0.00 31.99 3.67
3963 4059 2.512692 TAGTGCATGCTGGATGGTTT 57.487 45.000 20.33 0.00 31.99 3.27
3964 4060 1.180029 AGTGCATGCTGGATGGTTTC 58.820 50.000 20.33 0.00 31.99 2.78
3965 4061 0.889994 GTGCATGCTGGATGGTTTCA 59.110 50.000 20.33 0.00 31.99 2.69
3966 4062 0.889994 TGCATGCTGGATGGTTTCAC 59.110 50.000 20.33 0.00 31.99 3.18
3967 4063 0.179156 GCATGCTGGATGGTTTCACG 60.179 55.000 11.37 0.00 31.99 4.35
3968 4064 0.179156 CATGCTGGATGGTTTCACGC 60.179 55.000 0.63 0.00 0.00 5.34
3969 4065 1.647545 ATGCTGGATGGTTTCACGCG 61.648 55.000 3.53 3.53 0.00 6.01
3970 4066 2.480555 CTGGATGGTTTCACGCGC 59.519 61.111 5.73 0.00 0.00 6.86
3971 4067 2.031919 TGGATGGTTTCACGCGCT 59.968 55.556 5.73 0.00 0.00 5.92
3972 4068 1.577328 CTGGATGGTTTCACGCGCTT 61.577 55.000 5.73 0.00 0.00 4.68
3973 4069 1.134694 GGATGGTTTCACGCGCTTC 59.865 57.895 5.73 0.00 0.00 3.86
3974 4070 1.573829 GGATGGTTTCACGCGCTTCA 61.574 55.000 5.73 0.00 0.00 3.02
3975 4071 0.179215 GATGGTTTCACGCGCTTCAG 60.179 55.000 5.73 0.00 0.00 3.02
3976 4072 2.127232 GGTTTCACGCGCTTCAGC 60.127 61.111 5.73 0.00 37.78 4.26
3987 4083 2.668212 CTTCAGCGTTGGCGGGAA 60.668 61.111 0.00 0.00 46.35 3.97
3988 4084 2.203224 TTCAGCGTTGGCGGGAAA 60.203 55.556 0.00 0.00 46.35 3.13
3989 4085 2.458006 CTTCAGCGTTGGCGGGAAAC 62.458 60.000 0.00 0.00 46.35 2.78
3990 4086 3.283684 CAGCGTTGGCGGGAAACA 61.284 61.111 0.00 0.00 46.35 2.83
3991 4087 2.517402 AGCGTTGGCGGGAAACAA 60.517 55.556 0.00 0.00 46.35 2.83
3992 4088 2.050442 GCGTTGGCGGGAAACAAG 60.050 61.111 0.00 0.00 38.78 3.16
3993 4089 2.050442 CGTTGGCGGGAAACAAGC 60.050 61.111 0.00 0.00 35.20 4.01
3994 4090 2.050442 GTTGGCGGGAAACAAGCG 60.050 61.111 0.00 0.00 36.54 4.68
3995 4091 3.972276 TTGGCGGGAAACAAGCGC 61.972 61.111 0.00 0.00 37.73 5.92
4024 4120 3.365265 CAAAGGGCGGCAGGTCAC 61.365 66.667 12.47 0.00 0.00 3.67
4030 4126 4.735132 GCGGCAGGTCACGTGCTA 62.735 66.667 21.23 0.00 43.57 3.49
4031 4127 2.809601 CGGCAGGTCACGTGCTAC 60.810 66.667 21.23 4.56 43.57 3.58
4032 4128 2.657237 GGCAGGTCACGTGCTACT 59.343 61.111 21.23 5.64 43.57 2.57
4033 4129 1.004918 GGCAGGTCACGTGCTACTT 60.005 57.895 21.23 0.00 43.57 2.24
4034 4130 0.602905 GGCAGGTCACGTGCTACTTT 60.603 55.000 21.23 0.00 43.57 2.66
4035 4131 1.226746 GCAGGTCACGTGCTACTTTT 58.773 50.000 15.31 0.00 41.29 2.27
4036 4132 1.069906 GCAGGTCACGTGCTACTTTTG 60.070 52.381 15.31 6.68 41.29 2.44
4037 4133 1.531149 CAGGTCACGTGCTACTTTTGG 59.469 52.381 11.67 0.00 0.00 3.28
4038 4134 0.237498 GGTCACGTGCTACTTTTGGC 59.763 55.000 11.67 0.00 0.00 4.52
4039 4135 0.110823 GTCACGTGCTACTTTTGGCG 60.111 55.000 11.67 0.00 0.00 5.69
4040 4136 1.440353 CACGTGCTACTTTTGGCGC 60.440 57.895 0.82 0.00 35.86 6.53
4042 4138 2.501865 GTGCTACTTTTGGCGCGC 60.502 61.111 25.94 25.94 0.00 6.86
4043 4139 3.732892 TGCTACTTTTGGCGCGCC 61.733 61.111 42.35 42.35 0.00 6.53
4044 4140 4.811761 GCTACTTTTGGCGCGCCG 62.812 66.667 41.73 30.38 39.42 6.46
4061 4157 2.333938 GCTTCCCGCGCGTCTATA 59.666 61.111 29.95 8.07 0.00 1.31
4062 4158 1.299620 GCTTCCCGCGCGTCTATAA 60.300 57.895 29.95 13.43 0.00 0.98
4063 4159 0.872881 GCTTCCCGCGCGTCTATAAA 60.873 55.000 29.95 11.69 0.00 1.40
4064 4160 1.779569 CTTCCCGCGCGTCTATAAAT 58.220 50.000 29.95 0.00 0.00 1.40
4065 4161 2.132762 CTTCCCGCGCGTCTATAAATT 58.867 47.619 29.95 0.00 0.00 1.82
4066 4162 1.493772 TCCCGCGCGTCTATAAATTG 58.506 50.000 29.95 8.79 0.00 2.32
4067 4163 0.110823 CCCGCGCGTCTATAAATTGC 60.111 55.000 29.95 0.00 0.00 3.56
4070 4166 3.345087 CGCGTCTATAAATTGCGGC 57.655 52.632 0.00 0.00 44.65 6.53
4071 4167 0.448861 CGCGTCTATAAATTGCGGCG 60.449 55.000 0.51 0.51 44.65 6.46
4072 4168 0.721483 GCGTCTATAAATTGCGGCGC 60.721 55.000 27.44 27.44 36.97 6.53
4073 4169 0.859232 CGTCTATAAATTGCGGCGCT 59.141 50.000 33.26 15.39 0.00 5.92
4074 4170 1.136611 CGTCTATAAATTGCGGCGCTC 60.137 52.381 33.26 5.35 0.00 5.03
4075 4171 1.136611 GTCTATAAATTGCGGCGCTCG 60.137 52.381 33.26 10.91 42.76 5.03
4084 4180 3.394588 CGGCGCTCGCTATTGAAA 58.605 55.556 7.64 0.00 41.60 2.69
4085 4181 1.934463 CGGCGCTCGCTATTGAAAT 59.066 52.632 7.64 0.00 41.60 2.17
4086 4182 1.136690 CGGCGCTCGCTATTGAAATA 58.863 50.000 7.64 0.00 41.60 1.40
4087 4183 1.125021 CGGCGCTCGCTATTGAAATAG 59.875 52.381 7.64 5.81 41.02 1.73
4088 4184 2.404215 GGCGCTCGCTATTGAAATAGA 58.596 47.619 7.64 0.00 40.63 1.98
4089 4185 2.800544 GGCGCTCGCTATTGAAATAGAA 59.199 45.455 7.64 1.18 40.63 2.10
4090 4186 3.363084 GGCGCTCGCTATTGAAATAGAAC 60.363 47.826 7.64 0.00 40.63 3.01
4091 4187 3.659364 GCGCTCGCTATTGAAATAGAACG 60.659 47.826 13.13 8.44 40.63 3.95
4092 4188 3.729217 CGCTCGCTATTGAAATAGAACGA 59.271 43.478 13.13 11.56 40.63 3.85
4093 4189 4.143721 CGCTCGCTATTGAAATAGAACGAG 60.144 45.833 22.46 22.46 44.84 4.18
4094 4190 4.976731 GCTCGCTATTGAAATAGAACGAGA 59.023 41.667 26.75 13.29 44.84 4.04
4095 4191 5.108179 GCTCGCTATTGAAATAGAACGAGAC 60.108 44.000 26.75 19.35 44.84 3.36
4096 4192 4.968181 TCGCTATTGAAATAGAACGAGACG 59.032 41.667 13.13 6.11 40.63 4.18
4097 4193 4.374112 CGCTATTGAAATAGAACGAGACGC 60.374 45.833 13.13 0.00 40.63 5.19
4098 4194 4.503007 GCTATTGAAATAGAACGAGACGCA 59.497 41.667 13.13 0.00 40.63 5.24
4099 4195 5.005394 GCTATTGAAATAGAACGAGACGCAA 59.995 40.000 13.13 0.00 40.63 4.85
4100 4196 6.292381 GCTATTGAAATAGAACGAGACGCAAT 60.292 38.462 13.13 0.00 40.63 3.56
4101 4197 5.450376 TTGAAATAGAACGAGACGCAATC 57.550 39.130 0.00 0.00 0.00 2.67
4102 4198 4.744570 TGAAATAGAACGAGACGCAATCT 58.255 39.130 0.00 0.00 41.91 2.40
4103 4199 4.562789 TGAAATAGAACGAGACGCAATCTG 59.437 41.667 0.00 0.00 38.00 2.90
4104 4200 4.371855 AATAGAACGAGACGCAATCTGA 57.628 40.909 0.00 0.00 38.00 3.27
4105 4201 2.949451 AGAACGAGACGCAATCTGAT 57.051 45.000 0.00 0.00 38.00 2.90
4106 4202 5.690997 ATAGAACGAGACGCAATCTGATA 57.309 39.130 0.00 0.00 38.00 2.15
4107 4203 3.958704 AGAACGAGACGCAATCTGATAG 58.041 45.455 0.00 0.00 38.00 2.08
4108 4204 3.378742 AGAACGAGACGCAATCTGATAGT 59.621 43.478 0.00 0.00 38.00 2.12
4109 4205 4.575236 AGAACGAGACGCAATCTGATAGTA 59.425 41.667 0.00 0.00 38.00 1.82
4110 4206 4.895224 ACGAGACGCAATCTGATAGTAA 57.105 40.909 0.00 0.00 38.00 2.24
4111 4207 5.440234 ACGAGACGCAATCTGATAGTAAT 57.560 39.130 0.00 0.00 38.00 1.89
4112 4208 5.215903 ACGAGACGCAATCTGATAGTAATG 58.784 41.667 0.00 0.00 38.00 1.90
4113 4209 5.008712 ACGAGACGCAATCTGATAGTAATGA 59.991 40.000 0.00 0.00 38.00 2.57
4114 4210 5.915196 CGAGACGCAATCTGATAGTAATGAA 59.085 40.000 0.00 0.00 38.00 2.57
4115 4211 6.417930 CGAGACGCAATCTGATAGTAATGAAA 59.582 38.462 0.00 0.00 38.00 2.69
4116 4212 7.043391 CGAGACGCAATCTGATAGTAATGAAAA 60.043 37.037 0.00 0.00 38.00 2.29
4117 4213 8.492673 AGACGCAATCTGATAGTAATGAAAAA 57.507 30.769 0.00 0.00 35.81 1.94
4118 4214 8.391106 AGACGCAATCTGATAGTAATGAAAAAC 58.609 33.333 0.00 0.00 35.81 2.43
4119 4215 8.268850 ACGCAATCTGATAGTAATGAAAAACT 57.731 30.769 0.00 0.00 0.00 2.66
4120 4216 8.177663 ACGCAATCTGATAGTAATGAAAAACTG 58.822 33.333 0.00 0.00 0.00 3.16
4121 4217 8.177663 CGCAATCTGATAGTAATGAAAAACTGT 58.822 33.333 0.00 0.00 0.00 3.55
4122 4218 9.282247 GCAATCTGATAGTAATGAAAAACTGTG 57.718 33.333 0.00 0.00 0.00 3.66
4125 4221 9.950496 ATCTGATAGTAATGAAAAACTGTGTCT 57.050 29.630 0.00 0.00 0.00 3.41
4135 4231 9.850628 AATGAAAAACTGTGTCTATTGATGATG 57.149 29.630 0.00 0.00 0.00 3.07
4136 4232 8.620116 TGAAAAACTGTGTCTATTGATGATGA 57.380 30.769 0.00 0.00 0.00 2.92
4137 4233 8.506437 TGAAAAACTGTGTCTATTGATGATGAC 58.494 33.333 0.00 0.00 0.00 3.06
4138 4234 7.984422 AAAACTGTGTCTATTGATGATGACA 57.016 32.000 0.00 0.00 37.14 3.58
4139 4235 7.984422 AAACTGTGTCTATTGATGATGACAA 57.016 32.000 0.00 0.00 40.47 3.18
4140 4236 7.606858 AACTGTGTCTATTGATGATGACAAG 57.393 36.000 0.00 0.00 40.47 3.16
4141 4237 6.705302 ACTGTGTCTATTGATGATGACAAGT 58.295 36.000 0.00 0.00 40.47 3.16
4142 4238 7.164122 ACTGTGTCTATTGATGATGACAAGTT 58.836 34.615 0.00 0.00 40.47 2.66
4143 4239 8.314021 ACTGTGTCTATTGATGATGACAAGTTA 58.686 33.333 0.00 0.00 40.47 2.24
4144 4240 8.479313 TGTGTCTATTGATGATGACAAGTTAC 57.521 34.615 0.00 0.00 40.47 2.50
4145 4241 8.093927 TGTGTCTATTGATGATGACAAGTTACA 58.906 33.333 0.00 0.00 40.47 2.41
4146 4242 9.102757 GTGTCTATTGATGATGACAAGTTACAT 57.897 33.333 0.00 0.00 40.47 2.29
4160 4256 8.145767 TGACAAGTTACATATTTATAGTCCCCG 58.854 37.037 0.00 0.00 0.00 5.73
4161 4257 8.253867 ACAAGTTACATATTTATAGTCCCCGA 57.746 34.615 0.00 0.00 0.00 5.14
4162 4258 8.707449 ACAAGTTACATATTTATAGTCCCCGAA 58.293 33.333 0.00 0.00 0.00 4.30
4163 4259 9.204570 CAAGTTACATATTTATAGTCCCCGAAG 57.795 37.037 0.00 0.00 0.00 3.79
4177 4273 4.918201 GAAGGGGCGCATCCGGAG 62.918 72.222 11.34 3.17 34.94 4.63
4190 4286 3.677648 CGGAGGGACACGACGGTT 61.678 66.667 0.00 0.00 32.99 4.44
4191 4287 2.334946 CGGAGGGACACGACGGTTA 61.335 63.158 0.00 0.00 32.99 2.85
4192 4288 1.213799 GGAGGGACACGACGGTTAC 59.786 63.158 0.00 0.00 0.00 2.50
4193 4289 1.526575 GGAGGGACACGACGGTTACA 61.527 60.000 0.00 0.00 0.00 2.41
4194 4290 0.314935 GAGGGACACGACGGTTACAA 59.685 55.000 0.00 0.00 0.00 2.41
4195 4291 0.316204 AGGGACACGACGGTTACAAG 59.684 55.000 0.00 0.00 0.00 3.16
4196 4292 0.314935 GGGACACGACGGTTACAAGA 59.685 55.000 0.00 0.00 0.00 3.02
4197 4293 1.668047 GGGACACGACGGTTACAAGAG 60.668 57.143 0.00 0.00 0.00 2.85
4198 4294 1.000938 GGACACGACGGTTACAAGAGT 60.001 52.381 0.00 0.00 0.00 3.24
4199 4295 2.544486 GGACACGACGGTTACAAGAGTT 60.544 50.000 0.00 0.00 0.00 3.01
4200 4296 2.466846 ACACGACGGTTACAAGAGTTG 58.533 47.619 0.00 0.00 0.00 3.16
4201 4297 1.191647 CACGACGGTTACAAGAGTTGC 59.808 52.381 0.00 0.00 0.00 4.17
4202 4298 1.202440 ACGACGGTTACAAGAGTTGCA 60.202 47.619 0.00 0.00 0.00 4.08
4203 4299 2.066262 CGACGGTTACAAGAGTTGCAT 58.934 47.619 0.00 0.00 0.00 3.96
4204 4300 2.092211 CGACGGTTACAAGAGTTGCATC 59.908 50.000 0.00 0.00 0.00 3.91
4205 4301 3.326747 GACGGTTACAAGAGTTGCATCT 58.673 45.455 0.00 0.00 0.00 2.90
4206 4302 3.326747 ACGGTTACAAGAGTTGCATCTC 58.673 45.455 15.66 15.66 34.96 2.75
4207 4303 3.006967 ACGGTTACAAGAGTTGCATCTCT 59.993 43.478 19.51 19.51 45.36 3.10
4217 4313 5.798132 AGAGTTGCATCTCTTTGTATGACA 58.202 37.500 19.51 0.00 41.36 3.58
4218 4314 5.873712 AGAGTTGCATCTCTTTGTATGACAG 59.126 40.000 19.51 0.00 41.36 3.51
4219 4315 5.555017 AGTTGCATCTCTTTGTATGACAGT 58.445 37.500 0.00 0.00 0.00 3.55
4220 4316 6.000219 AGTTGCATCTCTTTGTATGACAGTT 59.000 36.000 0.00 0.00 0.00 3.16
4221 4317 6.488006 AGTTGCATCTCTTTGTATGACAGTTT 59.512 34.615 0.00 0.00 0.00 2.66
4222 4318 6.245115 TGCATCTCTTTGTATGACAGTTTG 57.755 37.500 0.00 0.00 0.00 2.93
4223 4319 5.181811 TGCATCTCTTTGTATGACAGTTTGG 59.818 40.000 0.00 0.00 0.00 3.28
4224 4320 5.412594 GCATCTCTTTGTATGACAGTTTGGA 59.587 40.000 0.00 0.00 0.00 3.53
4225 4321 6.094603 GCATCTCTTTGTATGACAGTTTGGAT 59.905 38.462 0.00 0.00 0.00 3.41
4226 4322 7.280876 GCATCTCTTTGTATGACAGTTTGGATA 59.719 37.037 0.00 0.00 0.00 2.59
4227 4323 9.166173 CATCTCTTTGTATGACAGTTTGGATAA 57.834 33.333 0.00 0.00 0.00 1.75
4228 4324 8.777865 TCTCTTTGTATGACAGTTTGGATAAG 57.222 34.615 0.00 0.00 0.00 1.73
4229 4325 8.375506 TCTCTTTGTATGACAGTTTGGATAAGT 58.624 33.333 0.00 0.00 0.00 2.24
4230 4326 8.322906 TCTTTGTATGACAGTTTGGATAAGTG 57.677 34.615 0.00 0.00 0.00 3.16
4231 4327 7.390440 TCTTTGTATGACAGTTTGGATAAGTGG 59.610 37.037 0.00 0.00 0.00 4.00
4232 4328 6.367374 TGTATGACAGTTTGGATAAGTGGA 57.633 37.500 0.00 0.00 0.00 4.02
4233 4329 6.406370 TGTATGACAGTTTGGATAAGTGGAG 58.594 40.000 0.00 0.00 0.00 3.86
4234 4330 5.762179 ATGACAGTTTGGATAAGTGGAGA 57.238 39.130 0.00 0.00 0.00 3.71
4235 4331 5.762179 TGACAGTTTGGATAAGTGGAGAT 57.238 39.130 0.00 0.00 0.00 2.75
4236 4332 6.126863 TGACAGTTTGGATAAGTGGAGATT 57.873 37.500 0.00 0.00 0.00 2.40
4237 4333 6.542821 TGACAGTTTGGATAAGTGGAGATTT 58.457 36.000 0.00 0.00 0.00 2.17
4238 4334 7.685481 TGACAGTTTGGATAAGTGGAGATTTA 58.315 34.615 0.00 0.00 0.00 1.40
4239 4335 8.160765 TGACAGTTTGGATAAGTGGAGATTTAA 58.839 33.333 0.00 0.00 0.00 1.52
4240 4336 9.178758 GACAGTTTGGATAAGTGGAGATTTAAT 57.821 33.333 0.00 0.00 0.00 1.40
4241 4337 9.178758 ACAGTTTGGATAAGTGGAGATTTAATC 57.821 33.333 0.00 0.00 0.00 1.75
4242 4338 9.401058 CAGTTTGGATAAGTGGAGATTTAATCT 57.599 33.333 7.23 7.23 43.70 2.40
4281 4377 7.170277 TGTTAATTAAGTCTTAACACTCCCCC 58.830 38.462 7.20 0.00 41.64 5.40
4282 4378 7.017850 TGTTAATTAAGTCTTAACACTCCCCCT 59.982 37.037 7.20 0.00 41.64 4.79
4283 4379 8.542926 GTTAATTAAGTCTTAACACTCCCCCTA 58.457 37.037 7.20 0.00 38.41 3.53
4284 4380 7.578458 AATTAAGTCTTAACACTCCCCCTAA 57.422 36.000 7.20 0.00 0.00 2.69
4285 4381 7.766736 ATTAAGTCTTAACACTCCCCCTAAT 57.233 36.000 7.20 0.00 0.00 1.73
4286 4382 5.695424 AAGTCTTAACACTCCCCCTAATC 57.305 43.478 0.00 0.00 0.00 1.75
4287 4383 4.961585 AGTCTTAACACTCCCCCTAATCT 58.038 43.478 0.00 0.00 0.00 2.40
4288 4384 6.101274 AGTCTTAACACTCCCCCTAATCTA 57.899 41.667 0.00 0.00 0.00 1.98
4289 4385 6.694611 AGTCTTAACACTCCCCCTAATCTAT 58.305 40.000 0.00 0.00 0.00 1.98
4290 4386 6.555360 AGTCTTAACACTCCCCCTAATCTATG 59.445 42.308 0.00 0.00 0.00 2.23
4291 4387 5.307196 TCTTAACACTCCCCCTAATCTATGC 59.693 44.000 0.00 0.00 0.00 3.14
4292 4388 1.971357 ACACTCCCCCTAATCTATGCG 59.029 52.381 0.00 0.00 0.00 4.73
4293 4389 1.971357 CACTCCCCCTAATCTATGCGT 59.029 52.381 0.00 0.00 0.00 5.24
4294 4390 1.971357 ACTCCCCCTAATCTATGCGTG 59.029 52.381 0.00 0.00 0.00 5.34
4295 4391 1.971357 CTCCCCCTAATCTATGCGTGT 59.029 52.381 0.00 0.00 0.00 4.49
4296 4392 1.968493 TCCCCCTAATCTATGCGTGTC 59.032 52.381 0.00 0.00 0.00 3.67
4297 4393 1.002087 CCCCCTAATCTATGCGTGTCC 59.998 57.143 0.00 0.00 0.00 4.02
4298 4394 1.691976 CCCCTAATCTATGCGTGTCCA 59.308 52.381 0.00 0.00 0.00 4.02
4299 4395 2.303022 CCCCTAATCTATGCGTGTCCAT 59.697 50.000 0.00 0.00 0.00 3.41
4300 4396 3.329386 CCCTAATCTATGCGTGTCCATG 58.671 50.000 0.00 0.00 0.00 3.66
4301 4397 3.244215 CCCTAATCTATGCGTGTCCATGT 60.244 47.826 0.00 0.00 0.00 3.21
4302 4398 4.021456 CCCTAATCTATGCGTGTCCATGTA 60.021 45.833 0.00 0.00 0.00 2.29
4303 4399 5.164233 CCTAATCTATGCGTGTCCATGTAG 58.836 45.833 0.00 0.00 0.00 2.74
4304 4400 4.672587 AATCTATGCGTGTCCATGTAGT 57.327 40.909 0.00 0.00 0.00 2.73
4305 4401 5.784578 AATCTATGCGTGTCCATGTAGTA 57.215 39.130 0.00 0.00 0.00 1.82
4306 4402 5.984695 ATCTATGCGTGTCCATGTAGTAT 57.015 39.130 0.00 0.00 0.00 2.12
4307 4403 5.372547 TCTATGCGTGTCCATGTAGTATC 57.627 43.478 0.00 0.00 0.00 2.24
4308 4404 4.825085 TCTATGCGTGTCCATGTAGTATCA 59.175 41.667 0.00 0.00 0.00 2.15
4309 4405 4.607293 ATGCGTGTCCATGTAGTATCAT 57.393 40.909 0.00 0.00 0.00 2.45
4310 4406 3.977427 TGCGTGTCCATGTAGTATCATC 58.023 45.455 0.00 0.00 0.00 2.92
4311 4407 3.383185 TGCGTGTCCATGTAGTATCATCA 59.617 43.478 0.00 0.00 0.00 3.07
4312 4408 4.039124 TGCGTGTCCATGTAGTATCATCAT 59.961 41.667 0.00 0.00 0.00 2.45
4313 4409 4.623167 GCGTGTCCATGTAGTATCATCATC 59.377 45.833 0.00 0.00 0.00 2.92
4314 4410 5.772521 CGTGTCCATGTAGTATCATCATCA 58.227 41.667 0.00 0.00 0.00 3.07
4315 4411 6.393171 CGTGTCCATGTAGTATCATCATCAT 58.607 40.000 0.00 0.00 0.00 2.45
4316 4412 6.529477 CGTGTCCATGTAGTATCATCATCATC 59.471 42.308 0.00 0.00 0.00 2.92
4317 4413 7.381323 GTGTCCATGTAGTATCATCATCATCA 58.619 38.462 0.00 0.00 0.00 3.07
4318 4414 7.874528 GTGTCCATGTAGTATCATCATCATCAA 59.125 37.037 0.00 0.00 0.00 2.57
4319 4415 7.874528 TGTCCATGTAGTATCATCATCATCAAC 59.125 37.037 0.00 0.00 0.00 3.18
4320 4416 8.093307 GTCCATGTAGTATCATCATCATCAACT 58.907 37.037 0.00 0.00 0.00 3.16
4321 4417 8.654094 TCCATGTAGTATCATCATCATCAACTT 58.346 33.333 0.00 0.00 0.00 2.66
4322 4418 9.933723 CCATGTAGTATCATCATCATCAACTTA 57.066 33.333 0.00 0.00 0.00 2.24
4325 4421 9.147732 TGTAGTATCATCATCATCAACTTAGGT 57.852 33.333 0.00 0.00 0.00 3.08
4331 4427 8.311395 TCATCATCATCAACTTAGGTAAGTCT 57.689 34.615 2.88 0.00 45.17 3.24
4332 4428 8.417106 TCATCATCATCAACTTAGGTAAGTCTC 58.583 37.037 2.88 0.00 45.17 3.36
4333 4429 7.113658 TCATCATCAACTTAGGTAAGTCTCC 57.886 40.000 2.88 0.00 45.17 3.71
4334 4430 6.897966 TCATCATCAACTTAGGTAAGTCTCCT 59.102 38.462 2.88 0.00 45.17 3.69
4335 4431 6.777213 TCATCAACTTAGGTAAGTCTCCTC 57.223 41.667 2.88 0.00 45.17 3.71
4336 4432 5.357314 TCATCAACTTAGGTAAGTCTCCTCG 59.643 44.000 2.88 0.00 45.17 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.615262 CAAATGGGAGGGAGGGGTC 59.385 63.158 0.00 0.00 0.00 4.46
42 43 1.720301 GAGCGAGCAGAGCAAATGG 59.280 57.895 0.00 0.00 37.01 3.16
195 196 5.593679 ATTGATATCGATTACCTACCGGG 57.406 43.478 6.32 0.00 41.89 5.73
200 201 5.186215 TGCCCGAATTGATATCGATTACCTA 59.814 40.000 16.70 2.65 42.76 3.08
212 213 3.733709 GGAGGATGCCCGAATTGAT 57.266 52.632 0.00 0.00 37.58 2.57
220 221 0.748367 GGAGAAAACGGAGGATGCCC 60.748 60.000 0.00 0.00 0.00 5.36
221 222 1.090052 CGGAGAAAACGGAGGATGCC 61.090 60.000 0.00 0.00 0.00 4.40
222 223 0.108329 TCGGAGAAAACGGAGGATGC 60.108 55.000 0.00 0.00 0.00 3.91
223 224 2.474816 GATCGGAGAAAACGGAGGATG 58.525 52.381 0.00 0.00 43.58 3.51
224 225 1.413077 GGATCGGAGAAAACGGAGGAT 59.587 52.381 0.00 0.00 43.58 3.24
225 226 0.822164 GGATCGGAGAAAACGGAGGA 59.178 55.000 0.00 0.00 43.58 3.71
226 227 0.527817 CGGATCGGAGAAAACGGAGG 60.528 60.000 0.00 0.00 43.58 4.30
227 228 0.172803 ACGGATCGGAGAAAACGGAG 59.827 55.000 7.35 0.00 43.58 4.63
228 229 0.171903 GACGGATCGGAGAAAACGGA 59.828 55.000 7.35 0.00 43.58 4.69
230 231 2.275703 CGACGGATCGGAGAAAACG 58.724 57.895 7.35 0.00 44.99 3.60
272 280 4.821589 CACGGCTTCTCCCTCGCC 62.822 72.222 0.00 0.00 40.40 5.54
274 282 2.837371 GAACCACGGCTTCTCCCTCG 62.837 65.000 0.00 0.00 0.00 4.63
377 386 2.363306 TGCAAGCCAGAAGAGGAAAA 57.637 45.000 0.00 0.00 0.00 2.29
378 387 2.363306 TTGCAAGCCAGAAGAGGAAA 57.637 45.000 0.00 0.00 0.00 3.13
379 388 2.363306 TTTGCAAGCCAGAAGAGGAA 57.637 45.000 0.00 0.00 0.00 3.36
380 389 2.363306 TTTTGCAAGCCAGAAGAGGA 57.637 45.000 0.00 0.00 0.00 3.71
422 431 0.687354 GAGAACCCAGCAAGAGGACA 59.313 55.000 0.00 0.00 0.00 4.02
429 438 2.852495 GATCGCGGAGAACCCAGCAA 62.852 60.000 6.13 0.00 35.26 3.91
442 451 0.933097 CCAAGACATTCAGGATCGCG 59.067 55.000 0.00 0.00 0.00 5.87
471 481 2.171237 CTGCATCCATCCTCACCAACTA 59.829 50.000 0.00 0.00 0.00 2.24
491 501 1.299541 CCGTATTTGCATCGAAGCCT 58.700 50.000 10.54 0.00 0.00 4.58
508 518 3.055591 CAATTCTCGATCCAGATCACCG 58.944 50.000 8.31 0.00 37.69 4.94
546 556 4.081862 TGCTTGGTACGGTAGGCATATATC 60.082 45.833 0.00 0.00 0.00 1.63
639 651 6.543430 AGCTCTGTCTAAAAGTCTGATCAT 57.457 37.500 0.00 0.00 0.00 2.45
656 668 5.471456 GGTTCCCACATATCATAAAGCTCTG 59.529 44.000 0.00 0.00 0.00 3.35
690 704 2.945008 CAGTTCTTGTCACAAGCCAGAA 59.055 45.455 13.15 0.00 0.00 3.02
692 706 1.605710 CCAGTTCTTGTCACAAGCCAG 59.394 52.381 13.15 2.94 0.00 4.85
693 707 1.064758 ACCAGTTCTTGTCACAAGCCA 60.065 47.619 13.15 0.00 0.00 4.75
694 708 1.680338 ACCAGTTCTTGTCACAAGCC 58.320 50.000 13.15 5.84 0.00 4.35
704 718 1.692411 GGTGGCTCAAACCAGTTCTT 58.308 50.000 0.00 0.00 41.46 2.52
708 722 1.071471 CTCGGTGGCTCAAACCAGT 59.929 57.895 0.00 0.00 41.46 4.00
713 727 0.250295 CCTGTTCTCGGTGGCTCAAA 60.250 55.000 0.00 0.00 0.00 2.69
736 750 4.159135 ACAGCCAAATTCCTAGCAAGATTG 59.841 41.667 0.00 0.00 0.00 2.67
737 751 4.347607 ACAGCCAAATTCCTAGCAAGATT 58.652 39.130 0.00 0.00 0.00 2.40
738 752 3.950395 GACAGCCAAATTCCTAGCAAGAT 59.050 43.478 0.00 0.00 0.00 2.40
739 753 3.347216 GACAGCCAAATTCCTAGCAAGA 58.653 45.455 0.00 0.00 0.00 3.02
740 754 2.096496 CGACAGCCAAATTCCTAGCAAG 59.904 50.000 0.00 0.00 0.00 4.01
742 756 1.277842 TCGACAGCCAAATTCCTAGCA 59.722 47.619 0.00 0.00 0.00 3.49
743 757 1.936547 CTCGACAGCCAAATTCCTAGC 59.063 52.381 0.00 0.00 0.00 3.42
757 773 3.691342 CCCAACGCCCTCTCGACA 61.691 66.667 0.00 0.00 0.00 4.35
790 806 7.624549 TGATAGGCTTGAAGATACTGAAAAGT 58.375 34.615 0.00 0.00 0.00 2.66
882 898 2.349886 ACGTACAGGTAAGTCGATCGTC 59.650 50.000 15.94 9.91 0.00 4.20
883 899 2.350522 ACGTACAGGTAAGTCGATCGT 58.649 47.619 15.94 0.00 0.00 3.73
1196 1215 2.180086 ACTATATCCTCAGGGTCCTGCA 59.820 50.000 11.95 0.00 43.31 4.41
1317 1339 3.629398 GGAGAGGATTGCAATAACACCAG 59.371 47.826 12.97 0.00 0.00 4.00
1514 1598 2.731572 AGTTGGAGCCATCAGGAATTG 58.268 47.619 0.86 0.00 36.89 2.32
1577 1661 3.492829 CCTTCTTTATAGCCACCGTCTCC 60.493 52.174 0.00 0.00 0.00 3.71
1859 1943 6.963805 GCAGTGCTTGAATAGATTTAACAGAC 59.036 38.462 8.18 0.00 0.00 3.51
1922 2008 8.090831 TGTATGCCAAAGATCTACATATCTGTC 58.909 37.037 0.00 0.00 36.34 3.51
2122 2208 7.083858 CGAAGTCACATAATTTCAATTGGTGT 58.916 34.615 5.42 8.19 36.85 4.16
2468 2554 4.649674 TCGCCAGGGAATATAGGCTATTAG 59.350 45.833 13.08 0.00 44.85 1.73
2708 2794 7.657354 GCTTTGATTTGTGGGAATTTAAACTCT 59.343 33.333 0.00 0.00 0.00 3.24
2769 2855 7.721402 TGAAGCCTTAGAAGCAAATAAAACAA 58.279 30.769 0.00 0.00 0.00 2.83
2817 2903 7.230108 GCATTCTTTTATGGAAGATCTGATGGA 59.770 37.037 0.00 0.00 35.70 3.41
3040 3135 3.942829 TCCAACTGTATCAGGAAAGCAG 58.057 45.455 1.90 0.00 35.51 4.24
3181 3276 1.855360 GATTAGTGCTAGTGCGAGTGC 59.145 52.381 0.00 0.00 43.34 4.40
3182 3277 3.150848 TGATTAGTGCTAGTGCGAGTG 57.849 47.619 0.00 0.00 43.34 3.51
3183 3278 3.868757 TTGATTAGTGCTAGTGCGAGT 57.131 42.857 0.00 0.00 43.34 4.18
3192 3287 8.823220 AGGGTTATAAACATTTGATTAGTGCT 57.177 30.769 2.32 0.00 0.00 4.40
3270 3365 1.637553 AGCTTCACCAGGATGTCCATT 59.362 47.619 0.00 0.00 38.89 3.16
3405 3500 0.822164 GGCTGCAGGCAATCTCAAAT 59.178 50.000 33.31 0.00 44.01 2.32
3647 3743 9.276590 TGATGAGTACAAATGAATTATAGCCTG 57.723 33.333 0.00 0.00 0.00 4.85
3762 3858 8.030106 ACTTAGCAGTATCTACTCAAGTTCAAC 58.970 37.037 0.00 0.00 33.46 3.18
3765 3861 8.030106 ACAACTTAGCAGTATCTACTCAAGTTC 58.970 37.037 13.29 0.00 33.46 3.01
3766 3862 7.897864 ACAACTTAGCAGTATCTACTCAAGTT 58.102 34.615 11.70 11.70 33.46 2.66
3767 3863 7.469537 ACAACTTAGCAGTATCTACTCAAGT 57.530 36.000 0.00 4.08 33.46 3.16
3768 3864 8.029522 TCAACAACTTAGCAGTATCTACTCAAG 58.970 37.037 0.00 0.00 33.46 3.02
3771 3867 8.030106 AGTTCAACAACTTAGCAGTATCTACTC 58.970 37.037 0.00 0.00 40.16 2.59
3772 3868 7.897864 AGTTCAACAACTTAGCAGTATCTACT 58.102 34.615 0.00 0.00 40.16 2.57
3784 3880 9.692749 CAGTATCTACTCAAGTTCAACAACTTA 57.307 33.333 0.00 0.00 41.47 2.24
3786 3882 6.647067 GCAGTATCTACTCAAGTTCAACAACT 59.353 38.462 0.00 0.00 38.33 3.16
3787 3883 6.647067 AGCAGTATCTACTCAAGTTCAACAAC 59.353 38.462 0.00 0.00 33.46 3.32
3788 3884 6.759272 AGCAGTATCTACTCAAGTTCAACAA 58.241 36.000 0.00 0.00 33.46 2.83
3789 3885 6.346477 AGCAGTATCTACTCAAGTTCAACA 57.654 37.500 0.00 0.00 33.46 3.33
3790 3886 8.030106 ACTTAGCAGTATCTACTCAAGTTCAAC 58.970 37.037 0.00 0.00 33.46 3.18
3791 3887 8.123639 ACTTAGCAGTATCTACTCAAGTTCAA 57.876 34.615 0.00 0.00 33.46 2.69
3792 3888 7.704578 ACTTAGCAGTATCTACTCAAGTTCA 57.295 36.000 0.00 0.00 33.46 3.18
3793 3889 8.030106 ACAACTTAGCAGTATCTACTCAAGTTC 58.970 37.037 13.29 0.00 33.46 3.01
3794 3890 7.897864 ACAACTTAGCAGTATCTACTCAAGTT 58.102 34.615 11.70 11.70 33.46 2.66
3795 3891 7.469537 ACAACTTAGCAGTATCTACTCAAGT 57.530 36.000 0.00 4.08 33.46 3.16
3796 3892 8.029522 TCAACAACTTAGCAGTATCTACTCAAG 58.970 37.037 0.00 0.00 33.46 3.02
3797 3893 7.892609 TCAACAACTTAGCAGTATCTACTCAA 58.107 34.615 0.00 0.00 33.46 3.02
3798 3894 7.462571 TCAACAACTTAGCAGTATCTACTCA 57.537 36.000 0.00 0.00 33.46 3.41
3799 3895 8.030106 AGTTCAACAACTTAGCAGTATCTACTC 58.970 37.037 0.00 0.00 40.16 2.59
3800 3896 7.897864 AGTTCAACAACTTAGCAGTATCTACT 58.102 34.615 0.00 0.00 40.16 2.57
3858 3954 1.210478 GGCCCTCAGACTGATTTGCTA 59.790 52.381 5.42 0.00 0.00 3.49
3869 3965 0.619832 AGAGAATGCAGGCCCTCAGA 60.620 55.000 0.00 0.00 0.00 3.27
3894 3990 3.084579 CGCGACTGTTGGAGATGC 58.915 61.111 0.00 0.00 0.00 3.91
3895 3991 2.456119 GGCGCGACTGTTGGAGATG 61.456 63.158 12.10 0.00 0.00 2.90
3896 3992 2.125512 GGCGCGACTGTTGGAGAT 60.126 61.111 12.10 0.00 0.00 2.75
3897 3993 3.158537 TTGGCGCGACTGTTGGAGA 62.159 57.895 15.80 0.00 0.00 3.71
3898 3994 2.664851 TTGGCGCGACTGTTGGAG 60.665 61.111 15.80 0.00 0.00 3.86
3899 3995 2.664851 CTTGGCGCGACTGTTGGA 60.665 61.111 15.80 0.00 0.00 3.53
3900 3996 2.664851 TCTTGGCGCGACTGTTGG 60.665 61.111 15.80 0.00 0.00 3.77
3901 3997 1.664649 TCTCTTGGCGCGACTGTTG 60.665 57.895 15.80 0.72 0.00 3.33
3902 3998 1.664965 GTCTCTTGGCGCGACTGTT 60.665 57.895 15.80 0.00 0.00 3.16
3903 3999 2.049063 GTCTCTTGGCGCGACTGT 60.049 61.111 15.80 0.00 0.00 3.55
3904 4000 3.175240 CGTCTCTTGGCGCGACTG 61.175 66.667 15.80 6.32 0.00 3.51
3922 4018 3.567383 AACAAGTTTACCGCGCGCG 62.567 57.895 43.73 43.73 39.44 6.86
3923 4019 1.790896 GAACAAGTTTACCGCGCGC 60.791 57.895 27.36 23.91 0.00 6.86
3924 4020 0.233848 AAGAACAAGTTTACCGCGCG 59.766 50.000 25.67 25.67 0.00 6.86
3925 4021 2.394545 AAAGAACAAGTTTACCGCGC 57.605 45.000 0.00 0.00 0.00 6.86
3926 4022 4.451557 CACTAAAGAACAAGTTTACCGCG 58.548 43.478 0.00 0.00 0.00 6.46
3927 4023 4.216731 GCACTAAAGAACAAGTTTACCGC 58.783 43.478 0.00 0.00 0.00 5.68
3928 4024 5.412526 TGCACTAAAGAACAAGTTTACCG 57.587 39.130 0.00 0.00 0.00 4.02
3929 4025 5.629435 GCATGCACTAAAGAACAAGTTTACC 59.371 40.000 14.21 0.00 0.00 2.85
3930 4026 6.360681 CAGCATGCACTAAAGAACAAGTTTAC 59.639 38.462 21.98 0.00 0.00 2.01
3931 4027 6.437928 CAGCATGCACTAAAGAACAAGTTTA 58.562 36.000 21.98 0.00 0.00 2.01
3932 4028 5.284079 CAGCATGCACTAAAGAACAAGTTT 58.716 37.500 21.98 0.00 0.00 2.66
3933 4029 4.261741 CCAGCATGCACTAAAGAACAAGTT 60.262 41.667 21.98 0.00 31.97 2.66
3934 4030 3.254166 CCAGCATGCACTAAAGAACAAGT 59.746 43.478 21.98 0.00 31.97 3.16
3935 4031 3.503363 TCCAGCATGCACTAAAGAACAAG 59.497 43.478 21.98 0.00 31.97 3.16
3936 4032 3.485394 TCCAGCATGCACTAAAGAACAA 58.515 40.909 21.98 0.00 31.97 2.83
3937 4033 3.138884 TCCAGCATGCACTAAAGAACA 57.861 42.857 21.98 0.00 31.97 3.18
3938 4034 3.181493 CCATCCAGCATGCACTAAAGAAC 60.181 47.826 21.98 0.00 31.97 3.01
3939 4035 3.018856 CCATCCAGCATGCACTAAAGAA 58.981 45.455 21.98 0.00 31.97 2.52
3940 4036 2.025981 ACCATCCAGCATGCACTAAAGA 60.026 45.455 21.98 7.11 31.97 2.52
3941 4037 2.372264 ACCATCCAGCATGCACTAAAG 58.628 47.619 21.98 6.83 31.97 1.85
3942 4038 2.512692 ACCATCCAGCATGCACTAAA 57.487 45.000 21.98 0.24 31.97 1.85
3943 4039 2.512692 AACCATCCAGCATGCACTAA 57.487 45.000 21.98 2.22 31.97 2.24
3944 4040 2.290832 TGAAACCATCCAGCATGCACTA 60.291 45.455 21.98 4.23 31.97 2.74
3945 4041 1.180029 GAAACCATCCAGCATGCACT 58.820 50.000 21.98 0.00 31.97 4.40
3946 4042 0.889994 TGAAACCATCCAGCATGCAC 59.110 50.000 21.98 0.00 31.97 4.57
3947 4043 0.889994 GTGAAACCATCCAGCATGCA 59.110 50.000 21.98 0.00 31.97 3.96
3948 4044 0.179156 CGTGAAACCATCCAGCATGC 60.179 55.000 10.51 10.51 31.97 4.06
3949 4045 0.179156 GCGTGAAACCATCCAGCATG 60.179 55.000 0.00 0.00 31.98 4.06
3950 4046 1.647545 CGCGTGAAACCATCCAGCAT 61.648 55.000 0.00 0.00 31.98 3.79
3951 4047 2.324330 CGCGTGAAACCATCCAGCA 61.324 57.895 0.00 0.00 31.98 4.41
3952 4048 2.480555 CGCGTGAAACCATCCAGC 59.519 61.111 0.00 0.00 0.00 4.85
3953 4049 1.577328 AAGCGCGTGAAACCATCCAG 61.577 55.000 8.43 0.00 0.00 3.86
3954 4050 1.573829 GAAGCGCGTGAAACCATCCA 61.574 55.000 8.43 0.00 0.00 3.41
3955 4051 1.134694 GAAGCGCGTGAAACCATCC 59.865 57.895 8.43 0.00 0.00 3.51
3956 4052 0.179215 CTGAAGCGCGTGAAACCATC 60.179 55.000 8.43 0.00 0.00 3.51
3957 4053 1.868997 CTGAAGCGCGTGAAACCAT 59.131 52.632 8.43 0.00 0.00 3.55
3958 4054 2.892334 GCTGAAGCGCGTGAAACCA 61.892 57.895 8.43 0.00 0.00 3.67
3959 4055 2.127232 GCTGAAGCGCGTGAAACC 60.127 61.111 8.43 0.00 0.00 3.27
3970 4066 2.258013 TTTCCCGCCAACGCTGAAG 61.258 57.895 0.00 0.00 38.22 3.02
3971 4067 2.203224 TTTCCCGCCAACGCTGAA 60.203 55.556 0.00 0.00 38.22 3.02
3972 4068 2.975799 GTTTCCCGCCAACGCTGA 60.976 61.111 0.00 0.00 38.22 4.26
3973 4069 2.731587 CTTGTTTCCCGCCAACGCTG 62.732 60.000 0.00 0.00 38.22 5.18
3974 4070 2.517402 TTGTTTCCCGCCAACGCT 60.517 55.556 0.00 0.00 38.22 5.07
3975 4071 2.050442 CTTGTTTCCCGCCAACGC 60.050 61.111 0.00 0.00 38.22 4.84
3976 4072 2.050442 GCTTGTTTCCCGCCAACG 60.050 61.111 0.00 0.00 39.67 4.10
3977 4073 2.050442 CGCTTGTTTCCCGCCAAC 60.050 61.111 0.00 0.00 0.00 3.77
3978 4074 3.972276 GCGCTTGTTTCCCGCCAA 61.972 61.111 0.00 0.00 41.72 4.52
4007 4103 3.365265 GTGACCTGCCGCCCTTTG 61.365 66.667 0.00 0.00 0.00 2.77
4013 4109 4.735132 TAGCACGTGACCTGCCGC 62.735 66.667 22.23 0.00 35.01 6.53
4014 4110 2.765250 AAGTAGCACGTGACCTGCCG 62.765 60.000 22.23 0.00 35.01 5.69
4015 4111 0.602905 AAAGTAGCACGTGACCTGCC 60.603 55.000 22.23 0.00 35.01 4.85
4016 4112 1.069906 CAAAAGTAGCACGTGACCTGC 60.070 52.381 22.23 11.43 34.63 4.85
4017 4113 1.531149 CCAAAAGTAGCACGTGACCTG 59.469 52.381 22.23 7.17 0.00 4.00
4018 4114 1.878953 CCAAAAGTAGCACGTGACCT 58.121 50.000 22.23 10.51 0.00 3.85
4019 4115 0.237498 GCCAAAAGTAGCACGTGACC 59.763 55.000 22.23 5.53 0.00 4.02
4020 4116 0.110823 CGCCAAAAGTAGCACGTGAC 60.111 55.000 22.23 9.77 0.00 3.67
4021 4117 1.837538 GCGCCAAAAGTAGCACGTGA 61.838 55.000 22.23 0.00 0.00 4.35
4022 4118 1.440353 GCGCCAAAAGTAGCACGTG 60.440 57.895 12.28 12.28 0.00 4.49
4023 4119 2.943653 GCGCCAAAAGTAGCACGT 59.056 55.556 0.00 0.00 0.00 4.49
4024 4120 2.202171 CGCGCCAAAAGTAGCACG 60.202 61.111 0.00 0.00 0.00 5.34
4025 4121 2.501865 GCGCGCCAAAAGTAGCAC 60.502 61.111 23.24 0.00 0.00 4.40
4026 4122 3.732892 GGCGCGCCAAAAGTAGCA 61.733 61.111 43.55 0.00 35.81 3.49
4027 4123 4.811761 CGGCGCGCCAAAAGTAGC 62.812 66.667 45.26 18.93 35.37 3.58
4044 4140 0.872881 TTTATAGACGCGCGGGAAGC 60.873 55.000 35.22 16.93 43.95 3.86
4045 4141 1.779569 ATTTATAGACGCGCGGGAAG 58.220 50.000 35.22 6.16 0.00 3.46
4046 4142 1.862201 CAATTTATAGACGCGCGGGAA 59.138 47.619 35.22 18.67 0.00 3.97
4047 4143 1.493772 CAATTTATAGACGCGCGGGA 58.506 50.000 35.22 18.93 0.00 5.14
4048 4144 0.110823 GCAATTTATAGACGCGCGGG 60.111 55.000 35.22 22.69 0.00 6.13
4049 4145 0.448861 CGCAATTTATAGACGCGCGG 60.449 55.000 35.22 16.31 39.43 6.46
4050 4146 0.448861 CCGCAATTTATAGACGCGCG 60.449 55.000 30.96 30.96 44.36 6.86
4051 4147 0.721483 GCCGCAATTTATAGACGCGC 60.721 55.000 5.73 0.00 44.36 6.86
4052 4148 0.448861 CGCCGCAATTTATAGACGCG 60.449 55.000 3.53 3.53 45.25 6.01
4053 4149 0.721483 GCGCCGCAATTTATAGACGC 60.721 55.000 3.15 0.00 38.17 5.19
4054 4150 0.859232 AGCGCCGCAATTTATAGACG 59.141 50.000 13.36 0.00 0.00 4.18
4055 4151 1.136611 CGAGCGCCGCAATTTATAGAC 60.137 52.381 13.36 0.00 0.00 2.59
4056 4152 1.136690 CGAGCGCCGCAATTTATAGA 58.863 50.000 13.36 0.00 0.00 1.98
4057 4153 3.639222 CGAGCGCCGCAATTTATAG 57.361 52.632 13.36 0.00 0.00 1.31
4067 4163 1.125021 CTATTTCAATAGCGAGCGCCG 59.875 52.381 11.66 9.10 43.17 6.46
4068 4164 2.404215 TCTATTTCAATAGCGAGCGCC 58.596 47.619 11.66 0.00 43.17 6.53
4069 4165 3.659364 CGTTCTATTTCAATAGCGAGCGC 60.659 47.826 6.78 6.78 38.57 5.92
4070 4166 3.729217 TCGTTCTATTTCAATAGCGAGCG 59.271 43.478 2.12 1.58 38.57 5.03
4071 4167 4.976731 TCTCGTTCTATTTCAATAGCGAGC 59.023 41.667 20.61 0.00 43.48 5.03
4072 4168 5.114273 CGTCTCGTTCTATTTCAATAGCGAG 59.886 44.000 19.96 19.96 44.22 5.03
4073 4169 4.968181 CGTCTCGTTCTATTTCAATAGCGA 59.032 41.667 2.12 5.70 38.57 4.93
4074 4170 4.374112 GCGTCTCGTTCTATTTCAATAGCG 60.374 45.833 2.12 2.08 38.57 4.26
4075 4171 4.503007 TGCGTCTCGTTCTATTTCAATAGC 59.497 41.667 2.12 0.00 38.57 2.97
4076 4172 6.569228 TTGCGTCTCGTTCTATTTCAATAG 57.431 37.500 0.67 0.67 39.75 1.73
4077 4173 6.978659 AGATTGCGTCTCGTTCTATTTCAATA 59.021 34.615 0.00 0.00 28.45 1.90
4078 4174 5.812642 AGATTGCGTCTCGTTCTATTTCAAT 59.187 36.000 0.00 0.00 28.45 2.57
4079 4175 5.062183 CAGATTGCGTCTCGTTCTATTTCAA 59.938 40.000 0.00 0.00 34.00 2.69
4080 4176 4.562789 CAGATTGCGTCTCGTTCTATTTCA 59.437 41.667 0.00 0.00 34.00 2.69
4081 4177 4.798907 TCAGATTGCGTCTCGTTCTATTTC 59.201 41.667 0.00 0.00 34.00 2.17
4082 4178 4.744570 TCAGATTGCGTCTCGTTCTATTT 58.255 39.130 0.00 0.00 34.00 1.40
4083 4179 4.371855 TCAGATTGCGTCTCGTTCTATT 57.628 40.909 0.00 0.00 34.00 1.73
4084 4180 4.576216 ATCAGATTGCGTCTCGTTCTAT 57.424 40.909 0.00 0.00 34.00 1.98
4085 4181 4.575236 ACTATCAGATTGCGTCTCGTTCTA 59.425 41.667 0.00 0.00 34.00 2.10
4086 4182 2.949451 ATCAGATTGCGTCTCGTTCT 57.051 45.000 0.00 0.00 34.00 3.01
4087 4183 3.696898 ACTATCAGATTGCGTCTCGTTC 58.303 45.455 0.00 0.00 34.00 3.95
4088 4184 3.784701 ACTATCAGATTGCGTCTCGTT 57.215 42.857 0.00 0.00 34.00 3.85
4089 4185 4.895224 TTACTATCAGATTGCGTCTCGT 57.105 40.909 0.00 0.00 34.00 4.18
4090 4186 5.452777 TCATTACTATCAGATTGCGTCTCG 58.547 41.667 0.00 0.00 34.00 4.04
4091 4187 7.700322 TTTCATTACTATCAGATTGCGTCTC 57.300 36.000 0.00 0.00 34.00 3.36
4092 4188 8.391106 GTTTTTCATTACTATCAGATTGCGTCT 58.609 33.333 0.00 0.00 37.80 4.18
4093 4189 8.391106 AGTTTTTCATTACTATCAGATTGCGTC 58.609 33.333 0.00 0.00 0.00 5.19
4094 4190 8.177663 CAGTTTTTCATTACTATCAGATTGCGT 58.822 33.333 0.00 0.00 0.00 5.24
4095 4191 8.177663 ACAGTTTTTCATTACTATCAGATTGCG 58.822 33.333 0.00 0.00 0.00 4.85
4096 4192 9.282247 CACAGTTTTTCATTACTATCAGATTGC 57.718 33.333 0.00 0.00 0.00 3.56
4099 4195 9.950496 AGACACAGTTTTTCATTACTATCAGAT 57.050 29.630 0.00 0.00 0.00 2.90
4109 4205 9.850628 CATCATCAATAGACACAGTTTTTCATT 57.149 29.630 0.00 0.00 0.00 2.57
4110 4206 9.234827 TCATCATCAATAGACACAGTTTTTCAT 57.765 29.630 0.00 0.00 0.00 2.57
4111 4207 8.506437 GTCATCATCAATAGACACAGTTTTTCA 58.494 33.333 0.00 0.00 0.00 2.69
4112 4208 8.506437 TGTCATCATCAATAGACACAGTTTTTC 58.494 33.333 0.00 0.00 36.20 2.29
4113 4209 8.394971 TGTCATCATCAATAGACACAGTTTTT 57.605 30.769 0.00 0.00 36.20 1.94
4114 4210 7.984422 TGTCATCATCAATAGACACAGTTTT 57.016 32.000 0.00 0.00 36.20 2.43
4115 4211 7.663081 ACTTGTCATCATCAATAGACACAGTTT 59.337 33.333 0.00 0.00 40.37 2.66
4116 4212 7.164122 ACTTGTCATCATCAATAGACACAGTT 58.836 34.615 0.00 0.00 40.37 3.16
4117 4213 6.705302 ACTTGTCATCATCAATAGACACAGT 58.295 36.000 0.00 0.00 40.37 3.55
4118 4214 7.606858 AACTTGTCATCATCAATAGACACAG 57.393 36.000 0.00 0.00 40.37 3.66
4119 4215 8.093927 TGTAACTTGTCATCATCAATAGACACA 58.906 33.333 0.00 0.00 40.37 3.72
4120 4216 8.479313 TGTAACTTGTCATCATCAATAGACAC 57.521 34.615 0.00 0.00 40.37 3.67
4134 4230 8.145767 CGGGGACTATAAATATGTAACTTGTCA 58.854 37.037 0.00 0.00 0.00 3.58
4135 4231 8.362639 TCGGGGACTATAAATATGTAACTTGTC 58.637 37.037 0.00 0.00 0.00 3.18
4136 4232 8.253867 TCGGGGACTATAAATATGTAACTTGT 57.746 34.615 0.00 0.00 0.00 3.16
4137 4233 9.204570 CTTCGGGGACTATAAATATGTAACTTG 57.795 37.037 0.00 0.00 0.00 3.16
4138 4234 8.373220 CCTTCGGGGACTATAAATATGTAACTT 58.627 37.037 0.00 0.00 37.23 2.66
4139 4235 7.904205 CCTTCGGGGACTATAAATATGTAACT 58.096 38.462 0.00 0.00 37.23 2.24
4160 4256 4.918201 CTCCGGATGCGCCCCTTC 62.918 72.222 3.57 0.00 0.00 3.46
4167 4263 4.873129 CGTGTCCCTCCGGATGCG 62.873 72.222 3.57 0.00 41.40 4.73
4168 4264 3.458163 TCGTGTCCCTCCGGATGC 61.458 66.667 3.57 0.00 41.40 3.91
4169 4265 2.494918 GTCGTGTCCCTCCGGATG 59.505 66.667 3.57 0.81 41.40 3.51
4170 4266 3.138798 CGTCGTGTCCCTCCGGAT 61.139 66.667 3.57 0.00 41.40 4.18
4173 4269 2.334946 TAACCGTCGTGTCCCTCCG 61.335 63.158 0.00 0.00 0.00 4.63
4174 4270 1.213799 GTAACCGTCGTGTCCCTCC 59.786 63.158 0.00 0.00 0.00 4.30
4175 4271 0.314935 TTGTAACCGTCGTGTCCCTC 59.685 55.000 0.00 0.00 0.00 4.30
4176 4272 0.316204 CTTGTAACCGTCGTGTCCCT 59.684 55.000 0.00 0.00 0.00 4.20
4177 4273 0.314935 TCTTGTAACCGTCGTGTCCC 59.685 55.000 0.00 0.00 0.00 4.46
4178 4274 1.000938 ACTCTTGTAACCGTCGTGTCC 60.001 52.381 0.00 0.00 0.00 4.02
4179 4275 2.412421 ACTCTTGTAACCGTCGTGTC 57.588 50.000 0.00 0.00 0.00 3.67
4180 4276 2.466846 CAACTCTTGTAACCGTCGTGT 58.533 47.619 0.00 0.00 0.00 4.49
4181 4277 1.191647 GCAACTCTTGTAACCGTCGTG 59.808 52.381 0.00 0.00 0.00 4.35
4182 4278 1.202440 TGCAACTCTTGTAACCGTCGT 60.202 47.619 0.00 0.00 0.00 4.34
4183 4279 1.493772 TGCAACTCTTGTAACCGTCG 58.506 50.000 0.00 0.00 0.00 5.12
4184 4280 3.326747 AGATGCAACTCTTGTAACCGTC 58.673 45.455 0.00 0.00 0.00 4.79
4185 4281 3.006967 AGAGATGCAACTCTTGTAACCGT 59.993 43.478 19.90 0.00 43.62 4.83
4186 4282 3.589988 AGAGATGCAACTCTTGTAACCG 58.410 45.455 19.90 0.00 43.62 4.44
4195 4291 5.641209 ACTGTCATACAAAGAGATGCAACTC 59.359 40.000 15.71 15.71 37.19 3.01
4196 4292 5.555017 ACTGTCATACAAAGAGATGCAACT 58.445 37.500 0.00 0.00 0.00 3.16
4197 4293 5.869753 ACTGTCATACAAAGAGATGCAAC 57.130 39.130 0.00 0.00 0.00 4.17
4198 4294 6.294120 CCAAACTGTCATACAAAGAGATGCAA 60.294 38.462 0.00 0.00 0.00 4.08
4199 4295 5.181811 CCAAACTGTCATACAAAGAGATGCA 59.818 40.000 0.00 0.00 0.00 3.96
4200 4296 5.412594 TCCAAACTGTCATACAAAGAGATGC 59.587 40.000 0.00 0.00 0.00 3.91
4201 4297 7.621428 ATCCAAACTGTCATACAAAGAGATG 57.379 36.000 0.00 0.00 0.00 2.90
4202 4298 9.388506 CTTATCCAAACTGTCATACAAAGAGAT 57.611 33.333 0.00 0.00 0.00 2.75
4203 4299 8.375506 ACTTATCCAAACTGTCATACAAAGAGA 58.624 33.333 0.00 0.00 0.00 3.10
4204 4300 8.446273 CACTTATCCAAACTGTCATACAAAGAG 58.554 37.037 0.00 0.00 0.00 2.85
4205 4301 7.390440 CCACTTATCCAAACTGTCATACAAAGA 59.610 37.037 0.00 0.00 0.00 2.52
4206 4302 7.390440 TCCACTTATCCAAACTGTCATACAAAG 59.610 37.037 0.00 0.00 0.00 2.77
4207 4303 7.227873 TCCACTTATCCAAACTGTCATACAAA 58.772 34.615 0.00 0.00 0.00 2.83
4208 4304 6.774673 TCCACTTATCCAAACTGTCATACAA 58.225 36.000 0.00 0.00 0.00 2.41
4209 4305 6.212589 TCTCCACTTATCCAAACTGTCATACA 59.787 38.462 0.00 0.00 0.00 2.29
4210 4306 6.640518 TCTCCACTTATCCAAACTGTCATAC 58.359 40.000 0.00 0.00 0.00 2.39
4211 4307 6.867519 TCTCCACTTATCCAAACTGTCATA 57.132 37.500 0.00 0.00 0.00 2.15
4212 4308 5.762179 TCTCCACTTATCCAAACTGTCAT 57.238 39.130 0.00 0.00 0.00 3.06
4213 4309 5.762179 ATCTCCACTTATCCAAACTGTCA 57.238 39.130 0.00 0.00 0.00 3.58
4214 4310 8.561738 TTAAATCTCCACTTATCCAAACTGTC 57.438 34.615 0.00 0.00 0.00 3.51
4215 4311 9.178758 GATTAAATCTCCACTTATCCAAACTGT 57.821 33.333 0.00 0.00 0.00 3.55
4216 4312 9.401058 AGATTAAATCTCCACTTATCCAAACTG 57.599 33.333 0.00 0.00 33.42 3.16
4256 4352 7.017850 AGGGGGAGTGTTAAGACTTAATTAACA 59.982 37.037 10.76 8.22 45.89 2.41
4257 4353 7.400439 AGGGGGAGTGTTAAGACTTAATTAAC 58.600 38.462 10.76 9.70 41.44 2.01
4258 4354 7.578458 AGGGGGAGTGTTAAGACTTAATTAA 57.422 36.000 10.76 0.00 0.00 1.40
4259 4355 8.683776 TTAGGGGGAGTGTTAAGACTTAATTA 57.316 34.615 10.76 1.55 0.00 1.40
4260 4356 7.578458 TTAGGGGGAGTGTTAAGACTTAATT 57.422 36.000 10.76 0.94 0.00 1.40
4261 4357 7.628101 AGATTAGGGGGAGTGTTAAGACTTAAT 59.372 37.037 10.76 6.54 0.00 1.40
4262 4358 6.964086 AGATTAGGGGGAGTGTTAAGACTTAA 59.036 38.462 6.73 3.44 0.00 1.85
4263 4359 6.509386 AGATTAGGGGGAGTGTTAAGACTTA 58.491 40.000 6.73 0.00 0.00 2.24
4264 4360 5.351405 AGATTAGGGGGAGTGTTAAGACTT 58.649 41.667 6.73 0.00 0.00 3.01
4265 4361 4.961585 AGATTAGGGGGAGTGTTAAGACT 58.038 43.478 4.69 4.69 0.00 3.24
4266 4362 6.741801 GCATAGATTAGGGGGAGTGTTAAGAC 60.742 46.154 0.00 0.00 0.00 3.01
4267 4363 5.307196 GCATAGATTAGGGGGAGTGTTAAGA 59.693 44.000 0.00 0.00 0.00 2.10
4268 4364 5.552178 GCATAGATTAGGGGGAGTGTTAAG 58.448 45.833 0.00 0.00 0.00 1.85
4269 4365 4.039973 CGCATAGATTAGGGGGAGTGTTAA 59.960 45.833 0.00 0.00 0.00 2.01
4270 4366 3.576982 CGCATAGATTAGGGGGAGTGTTA 59.423 47.826 0.00 0.00 0.00 2.41
4271 4367 2.368875 CGCATAGATTAGGGGGAGTGTT 59.631 50.000 0.00 0.00 0.00 3.32
4272 4368 1.971357 CGCATAGATTAGGGGGAGTGT 59.029 52.381 0.00 0.00 0.00 3.55
4273 4369 1.971357 ACGCATAGATTAGGGGGAGTG 59.029 52.381 0.00 0.00 0.00 3.51
4274 4370 1.971357 CACGCATAGATTAGGGGGAGT 59.029 52.381 0.00 0.00 0.00 3.85
4275 4371 1.971357 ACACGCATAGATTAGGGGGAG 59.029 52.381 0.00 0.00 0.00 4.30
4276 4372 1.968493 GACACGCATAGATTAGGGGGA 59.032 52.381 0.00 0.00 0.00 4.81
4277 4373 1.002087 GGACACGCATAGATTAGGGGG 59.998 57.143 0.00 0.00 0.00 5.40
4278 4374 1.691976 TGGACACGCATAGATTAGGGG 59.308 52.381 0.00 0.00 0.00 4.79
4279 4375 3.244215 ACATGGACACGCATAGATTAGGG 60.244 47.826 0.00 0.00 0.00 3.53
4280 4376 3.995199 ACATGGACACGCATAGATTAGG 58.005 45.455 0.00 0.00 0.00 2.69
4281 4377 5.773575 ACTACATGGACACGCATAGATTAG 58.226 41.667 0.00 0.00 0.00 1.73
4282 4378 5.784578 ACTACATGGACACGCATAGATTA 57.215 39.130 0.00 0.00 0.00 1.75
4283 4379 4.672587 ACTACATGGACACGCATAGATT 57.327 40.909 0.00 0.00 0.00 2.40
4284 4380 5.476945 TGATACTACATGGACACGCATAGAT 59.523 40.000 0.00 0.00 0.00 1.98
4285 4381 4.825085 TGATACTACATGGACACGCATAGA 59.175 41.667 0.00 0.00 0.00 1.98
4286 4382 5.121221 TGATACTACATGGACACGCATAG 57.879 43.478 0.00 0.00 0.00 2.23
4287 4383 5.242838 TGATGATACTACATGGACACGCATA 59.757 40.000 0.00 0.00 0.00 3.14
4288 4384 4.039124 TGATGATACTACATGGACACGCAT 59.961 41.667 0.00 0.00 0.00 4.73
4289 4385 3.383185 TGATGATACTACATGGACACGCA 59.617 43.478 0.00 0.00 0.00 5.24
4290 4386 3.977427 TGATGATACTACATGGACACGC 58.023 45.455 0.00 0.00 0.00 5.34
4291 4387 5.772521 TGATGATGATACTACATGGACACG 58.227 41.667 0.00 0.00 0.00 4.49
4292 4388 7.381323 TGATGATGATGATACTACATGGACAC 58.619 38.462 0.00 0.00 0.00 3.67
4293 4389 7.543359 TGATGATGATGATACTACATGGACA 57.457 36.000 0.00 0.00 0.00 4.02
4294 4390 8.093307 AGTTGATGATGATGATACTACATGGAC 58.907 37.037 0.00 0.00 0.00 4.02
4295 4391 8.198807 AGTTGATGATGATGATACTACATGGA 57.801 34.615 0.00 0.00 0.00 3.41
4296 4392 8.843885 AAGTTGATGATGATGATACTACATGG 57.156 34.615 0.00 0.00 0.00 3.66
4299 4395 9.147732 ACCTAAGTTGATGATGATGATACTACA 57.852 33.333 0.00 0.00 0.00 2.74
4303 4399 9.988815 ACTTACCTAAGTTGATGATGATGATAC 57.011 33.333 0.00 0.00 43.57 2.24
4305 4401 8.932610 AGACTTACCTAAGTTGATGATGATGAT 58.067 33.333 0.00 0.00 45.84 2.45
4306 4402 8.311395 AGACTTACCTAAGTTGATGATGATGA 57.689 34.615 0.00 0.00 45.84 2.92
4307 4403 7.655328 GGAGACTTACCTAAGTTGATGATGATG 59.345 40.741 0.00 0.00 45.84 3.07
4308 4404 7.566879 AGGAGACTTACCTAAGTTGATGATGAT 59.433 37.037 0.00 0.00 45.84 2.45
4309 4405 6.897966 AGGAGACTTACCTAAGTTGATGATGA 59.102 38.462 0.00 0.00 45.84 2.92
4310 4406 7.118496 AGGAGACTTACCTAAGTTGATGATG 57.882 40.000 0.00 0.00 45.84 3.07
4311 4407 6.039941 CGAGGAGACTTACCTAAGTTGATGAT 59.960 42.308 0.00 0.00 45.84 2.45
4312 4408 5.357314 CGAGGAGACTTACCTAAGTTGATGA 59.643 44.000 0.00 0.00 45.84 2.92
4313 4409 5.583495 CGAGGAGACTTACCTAAGTTGATG 58.417 45.833 0.00 0.00 45.84 3.07
4314 4410 5.838531 CGAGGAGACTTACCTAAGTTGAT 57.161 43.478 0.00 0.00 45.84 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.