Multiple sequence alignment - TraesCS1A01G077100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G077100 chr1A 100.000 2408 0 0 1 2408 59850712 59848305 0.000000e+00 4447.0
1 TraesCS1A01G077100 chr1A 91.654 635 46 3 1779 2408 234805013 234805645 0.000000e+00 872.0
2 TraesCS1A01G077100 chr1A 89.776 313 31 1 203 514 571740382 571740070 1.340000e-107 399.0
3 TraesCS1A01G077100 chr1A 96.020 201 8 0 509 709 59856599 59856399 6.420000e-86 327.0
4 TraesCS1A01G077100 chr5D 89.082 1035 80 13 705 1730 370953331 370954341 0.000000e+00 1254.0
5 TraesCS1A01G077100 chr5D 89.174 896 77 11 705 1593 499061092 499061974 0.000000e+00 1099.0
6 TraesCS1A01G077100 chr5D 93.564 637 32 7 1779 2408 505436848 505437482 0.000000e+00 941.0
7 TraesCS1A01G077100 chr5D 91.722 302 23 2 209 509 376126783 376127083 3.700000e-113 418.0
8 TraesCS1A01G077100 chr5D 90.850 306 26 2 206 509 252710105 252709800 2.230000e-110 409.0
9 TraesCS1A01G077100 chr5D 89.776 313 31 1 201 512 80305082 80304770 1.340000e-107 399.0
10 TraesCS1A01G077100 chr4A 90.831 927 73 8 806 1730 589783816 589784732 0.000000e+00 1230.0
11 TraesCS1A01G077100 chr4A 85.311 177 21 4 509 685 186686819 186686648 6.840000e-41 178.0
12 TraesCS1A01G077100 chr3A 89.680 969 86 8 726 1692 671755517 671756473 0.000000e+00 1223.0
13 TraesCS1A01G077100 chr3A 91.503 306 25 1 205 509 566746947 566747252 1.030000e-113 420.0
14 TraesCS1A01G077100 chr4D 88.008 1034 105 11 705 1730 224752985 224754007 0.000000e+00 1205.0
15 TraesCS1A01G077100 chr4D 92.622 637 36 7 1779 2408 395360514 395359882 0.000000e+00 905.0
16 TraesCS1A01G077100 chr4D 92.405 632 42 6 1779 2408 395307153 395306526 0.000000e+00 896.0
17 TraesCS1A01G077100 chr4D 92.151 637 39 9 1779 2408 395226407 395225775 0.000000e+00 889.0
18 TraesCS1A01G077100 chr4D 92.101 633 42 8 1779 2408 395237307 395236680 0.000000e+00 885.0
19 TraesCS1A01G077100 chr4D 90.196 306 29 1 205 509 333454284 333454589 4.820000e-107 398.0
20 TraesCS1A01G077100 chr4D 88.372 301 30 4 205 502 42514935 42515233 8.190000e-95 357.0
21 TraesCS1A01G077100 chr4D 88.079 302 35 1 209 509 56741426 56741125 8.190000e-95 357.0
22 TraesCS1A01G077100 chr2A 87.075 1029 111 15 713 1729 22737411 22736393 0.000000e+00 1144.0
23 TraesCS1A01G077100 chr2A 91.496 635 48 4 1780 2408 715772299 715772933 0.000000e+00 869.0
24 TraesCS1A01G077100 chr2A 91.830 306 23 2 205 509 185990102 185990406 2.210000e-115 425.0
25 TraesCS1A01G077100 chr2A 87.179 195 20 4 509 703 123137585 123137774 1.450000e-52 217.0
26 TraesCS1A01G077100 chr3D 89.515 887 76 10 849 1730 91821963 91821089 0.000000e+00 1107.0
27 TraesCS1A01G077100 chr3D 91.509 318 24 3 205 519 144329941 144330258 3.680000e-118 435.0
28 TraesCS1A01G077100 chr3D 90.850 306 27 1 205 509 206620487 206620792 2.230000e-110 409.0
29 TraesCS1A01G077100 chr7D 86.059 954 108 10 786 1730 529746253 529745316 0.000000e+00 1002.0
30 TraesCS1A01G077100 chr7D 91.176 306 25 2 205 509 137612594 137612898 4.790000e-112 414.0
31 TraesCS1A01G077100 chr7D 90.850 306 27 1 205 509 321314036 321313731 2.230000e-110 409.0
32 TraesCS1A01G077100 chr6D 85.036 969 108 22 786 1736 418767866 418768815 0.000000e+00 952.0
33 TraesCS1A01G077100 chr6D 91.722 302 24 1 209 509 83932343 83932042 3.700000e-113 418.0
34 TraesCS1A01G077100 chr6D 91.362 301 23 3 210 509 193622884 193623182 2.230000e-110 409.0
35 TraesCS1A01G077100 chr6D 90.032 311 29 2 205 514 88829649 88829340 3.730000e-108 401.0
36 TraesCS1A01G077100 chr6D 87.868 272 32 1 239 509 24901500 24901229 3.860000e-83 318.0
37 TraesCS1A01G077100 chr6D 87.166 187 22 2 517 703 145730701 145730517 6.740000e-51 211.0
38 TraesCS1A01G077100 chr6D 87.568 185 18 4 517 701 145758637 145758458 2.430000e-50 209.0
39 TraesCS1A01G077100 chr5A 92.756 635 39 3 1779 2408 548635831 548635199 0.000000e+00 911.0
40 TraesCS1A01G077100 chrUn 91.496 635 44 8 1779 2408 367933612 367932983 0.000000e+00 865.0
41 TraesCS1A01G077100 chrUn 91.503 306 24 2 205 509 91678789 91679093 1.030000e-113 420.0
42 TraesCS1A01G077100 chrUn 90.228 307 28 2 205 509 335803705 335803399 1.340000e-107 399.0
43 TraesCS1A01G077100 chrUn 87.742 310 36 2 201 509 56924660 56924352 6.330000e-96 361.0
44 TraesCS1A01G077100 chrUn 87.987 308 32 4 205 509 127033133 127033438 2.280000e-95 359.0
45 TraesCS1A01G077100 chrUn 85.993 307 40 3 205 509 352016626 352016321 2.310000e-85 326.0
46 TraesCS1A01G077100 chrUn 93.814 194 11 1 510 703 305394706 305394898 8.420000e-75 291.0
47 TraesCS1A01G077100 chrUn 93.814 194 11 1 510 703 350228907 350229099 8.420000e-75 291.0
48 TraesCS1A01G077100 chrUn 92.500 200 14 1 510 709 372808073 372807875 3.920000e-73 285.0
49 TraesCS1A01G077100 chrUn 95.625 160 6 1 544 703 462100256 462100414 3.070000e-64 255.0
50 TraesCS1A01G077100 chrUn 87.692 195 21 3 509 703 48439730 48439921 8.660000e-55 224.0
51 TraesCS1A01G077100 chr7A 88.452 407 35 9 1328 1730 619082871 619082473 4.660000e-132 481.0
52 TraesCS1A01G077100 chr7A 96.585 205 6 1 1 205 56015951 56015748 2.970000e-89 339.0
53 TraesCS1A01G077100 chr7A 95.385 195 8 1 509 703 56015750 56015557 2.320000e-80 309.0
54 TraesCS1A01G077100 chr7A 92.500 200 14 1 510 709 56032640 56032442 3.920000e-73 285.0
55 TraesCS1A01G077100 chr7A 80.769 130 19 4 1601 1730 709783816 709783939 1.970000e-16 97.1
56 TraesCS1A01G077100 chr1B 94.352 301 15 2 210 509 313272527 313272826 6.070000e-126 460.0
57 TraesCS1A01G077100 chr1B 91.613 310 25 1 205 513 633285615 633285924 6.150000e-116 427.0
58 TraesCS1A01G077100 chr1B 97.500 200 5 0 1 200 24224426 24224625 2.290000e-90 342.0
59 TraesCS1A01G077100 chr6A 91.054 313 27 1 201 512 219445415 219445727 2.860000e-114 422.0
60 TraesCS1A01G077100 chr2D 91.503 306 24 2 205 509 277597287 277597591 1.030000e-113 420.0
61 TraesCS1A01G077100 chr2D 91.776 304 22 2 207 509 586280511 586280210 1.030000e-113 420.0
62 TraesCS1A01G077100 chr1D 90.675 311 26 3 201 510 427633878 427634186 6.200000e-111 411.0
63 TraesCS1A01G077100 chr1D 90.196 306 26 3 201 505 3959193 3958891 1.730000e-106 396.0
64 TraesCS1A01G077100 chr1D 89.333 300 31 1 205 503 19871561 19871860 2.260000e-100 375.0
65 TraesCS1A01G077100 chr1D 88.462 312 32 4 205 514 100122443 100122752 8.130000e-100 374.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G077100 chr1A 59848305 59850712 2407 True 4447 4447 100.000 1 2408 1 chr1A.!!$R1 2407
1 TraesCS1A01G077100 chr1A 234805013 234805645 632 False 872 872 91.654 1779 2408 1 chr1A.!!$F1 629
2 TraesCS1A01G077100 chr5D 370953331 370954341 1010 False 1254 1254 89.082 705 1730 1 chr5D.!!$F1 1025
3 TraesCS1A01G077100 chr5D 499061092 499061974 882 False 1099 1099 89.174 705 1593 1 chr5D.!!$F3 888
4 TraesCS1A01G077100 chr5D 505436848 505437482 634 False 941 941 93.564 1779 2408 1 chr5D.!!$F4 629
5 TraesCS1A01G077100 chr4A 589783816 589784732 916 False 1230 1230 90.831 806 1730 1 chr4A.!!$F1 924
6 TraesCS1A01G077100 chr3A 671755517 671756473 956 False 1223 1223 89.680 726 1692 1 chr3A.!!$F2 966
7 TraesCS1A01G077100 chr4D 224752985 224754007 1022 False 1205 1205 88.008 705 1730 1 chr4D.!!$F2 1025
8 TraesCS1A01G077100 chr4D 395359882 395360514 632 True 905 905 92.622 1779 2408 1 chr4D.!!$R5 629
9 TraesCS1A01G077100 chr4D 395306526 395307153 627 True 896 896 92.405 1779 2408 1 chr4D.!!$R4 629
10 TraesCS1A01G077100 chr4D 395225775 395226407 632 True 889 889 92.151 1779 2408 1 chr4D.!!$R2 629
11 TraesCS1A01G077100 chr4D 395236680 395237307 627 True 885 885 92.101 1779 2408 1 chr4D.!!$R3 629
12 TraesCS1A01G077100 chr2A 22736393 22737411 1018 True 1144 1144 87.075 713 1729 1 chr2A.!!$R1 1016
13 TraesCS1A01G077100 chr2A 715772299 715772933 634 False 869 869 91.496 1780 2408 1 chr2A.!!$F3 628
14 TraesCS1A01G077100 chr3D 91821089 91821963 874 True 1107 1107 89.515 849 1730 1 chr3D.!!$R1 881
15 TraesCS1A01G077100 chr7D 529745316 529746253 937 True 1002 1002 86.059 786 1730 1 chr7D.!!$R2 944
16 TraesCS1A01G077100 chr6D 418767866 418768815 949 False 952 952 85.036 786 1736 1 chr6D.!!$F2 950
17 TraesCS1A01G077100 chr5A 548635199 548635831 632 True 911 911 92.756 1779 2408 1 chr5A.!!$R1 629
18 TraesCS1A01G077100 chrUn 367932983 367933612 629 True 865 865 91.496 1779 2408 1 chrUn.!!$R4 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.034186 GGATTGGAGTGTCATGCCCA 60.034 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1796 0.320374 TTTCAGCACGAGTACCCCTG 59.68 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.530177 TCGAGAGATTCATGTCGTTGC 58.470 47.619 0.00 0.00 34.07 4.17
26 27 2.094752 TCGAGAGATTCATGTCGTTGCA 60.095 45.455 0.00 0.00 34.07 4.08
27 28 2.280971 CGAGAGATTCATGTCGTTGCAG 59.719 50.000 0.00 0.00 0.00 4.41
28 29 3.257393 GAGAGATTCATGTCGTTGCAGT 58.743 45.455 0.00 0.00 0.00 4.40
29 30 2.998670 AGAGATTCATGTCGTTGCAGTG 59.001 45.455 0.00 0.00 0.00 3.66
30 31 1.466167 AGATTCATGTCGTTGCAGTGC 59.534 47.619 8.58 8.58 0.00 4.40
31 32 1.197492 GATTCATGTCGTTGCAGTGCA 59.803 47.619 15.37 15.37 36.47 4.57
32 33 0.307453 TTCATGTCGTTGCAGTGCAC 59.693 50.000 19.58 9.40 38.71 4.57
33 34 0.813210 TCATGTCGTTGCAGTGCACA 60.813 50.000 19.58 13.17 38.71 4.57
34 35 0.385098 CATGTCGTTGCAGTGCACAG 60.385 55.000 19.58 14.84 38.71 3.66
35 36 0.815213 ATGTCGTTGCAGTGCACAGT 60.815 50.000 19.58 0.00 38.71 3.55
36 37 1.010797 GTCGTTGCAGTGCACAGTG 60.011 57.895 19.58 10.84 38.71 3.66
55 56 3.130160 GAGGCTGCCGCTTGGAAG 61.130 66.667 15.58 0.00 42.06 3.46
130 131 2.978824 GCTGAGGCCGTCCAACTA 59.021 61.111 0.00 0.00 33.74 2.24
131 132 1.153549 GCTGAGGCCGTCCAACTAG 60.154 63.158 0.00 0.00 33.74 2.57
132 133 1.153549 CTGAGGCCGTCCAACTAGC 60.154 63.158 0.00 0.00 33.74 3.42
133 134 2.202756 GAGGCCGTCCAACTAGCG 60.203 66.667 0.00 0.00 33.74 4.26
134 135 2.678934 AGGCCGTCCAACTAGCGA 60.679 61.111 0.00 0.00 33.74 4.93
135 136 2.202756 GGCCGTCCAACTAGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
136 137 2.886124 GCCGTCCAACTAGCGAGC 60.886 66.667 0.00 0.00 0.00 5.03
137 138 2.579787 CCGTCCAACTAGCGAGCG 60.580 66.667 0.00 0.00 0.00 5.03
138 139 2.483745 CGTCCAACTAGCGAGCGA 59.516 61.111 0.00 0.00 0.00 4.93
139 140 1.064296 CGTCCAACTAGCGAGCGAT 59.936 57.895 0.00 0.00 0.00 4.58
140 141 1.202973 CGTCCAACTAGCGAGCGATG 61.203 60.000 0.00 0.00 0.00 3.84
141 142 1.226974 TCCAACTAGCGAGCGATGC 60.227 57.895 0.00 0.00 0.00 3.91
142 143 2.240500 CCAACTAGCGAGCGATGCC 61.241 63.158 0.00 0.00 0.00 4.40
143 144 2.278857 AACTAGCGAGCGATGCCG 60.279 61.111 0.00 0.00 39.16 5.69
144 145 3.064987 AACTAGCGAGCGATGCCGT 62.065 57.895 0.00 0.00 38.24 5.68
145 146 1.721664 AACTAGCGAGCGATGCCGTA 61.722 55.000 0.00 0.00 38.24 4.02
146 147 1.441182 CTAGCGAGCGATGCCGTAG 60.441 63.158 0.00 0.00 38.24 3.51
147 148 3.538028 TAGCGAGCGATGCCGTAGC 62.538 63.158 0.00 0.00 38.24 3.58
177 178 3.374402 CACCGGTGGAGTCGCTCT 61.374 66.667 27.57 0.00 0.00 4.09
178 179 3.374402 ACCGGTGGAGTCGCTCTG 61.374 66.667 6.12 0.00 0.00 3.35
179 180 4.803426 CCGGTGGAGTCGCTCTGC 62.803 72.222 0.00 0.39 35.00 4.26
180 181 4.803426 CGGTGGAGTCGCTCTGCC 62.803 72.222 6.78 7.92 33.42 4.85
181 182 4.803426 GGTGGAGTCGCTCTGCCG 62.803 72.222 6.78 0.00 33.42 5.69
182 183 4.803426 GTGGAGTCGCTCTGCCGG 62.803 72.222 0.00 0.00 33.42 6.13
185 186 4.200283 GAGTCGCTCTGCCGGGAG 62.200 72.222 18.34 18.34 36.50 4.30
196 197 3.770040 CCGGGAGCGTGGTGATGA 61.770 66.667 0.00 0.00 0.00 2.92
197 198 2.509336 CGGGAGCGTGGTGATGAC 60.509 66.667 0.00 0.00 0.00 3.06
198 199 2.509336 GGGAGCGTGGTGATGACG 60.509 66.667 0.00 0.00 39.87 4.35
199 200 2.261671 GGAGCGTGGTGATGACGT 59.738 61.111 0.00 0.00 39.08 4.34
200 201 1.509463 GGAGCGTGGTGATGACGTA 59.491 57.895 0.00 0.00 39.08 3.57
201 202 0.102481 GGAGCGTGGTGATGACGTAT 59.898 55.000 0.00 0.00 39.08 3.06
202 203 1.470979 GGAGCGTGGTGATGACGTATT 60.471 52.381 0.00 0.00 39.08 1.89
203 204 1.588404 GAGCGTGGTGATGACGTATTG 59.412 52.381 0.00 0.00 39.08 1.90
204 205 1.203758 AGCGTGGTGATGACGTATTGA 59.796 47.619 0.00 0.00 39.08 2.57
205 206 1.588404 GCGTGGTGATGACGTATTGAG 59.412 52.381 0.00 0.00 39.08 3.02
206 207 2.193447 CGTGGTGATGACGTATTGAGG 58.807 52.381 0.00 0.00 32.06 3.86
207 208 2.550978 GTGGTGATGACGTATTGAGGG 58.449 52.381 0.00 0.00 0.00 4.30
208 209 1.134521 TGGTGATGACGTATTGAGGGC 60.135 52.381 0.00 0.00 0.00 5.19
209 210 1.583054 GTGATGACGTATTGAGGGCC 58.417 55.000 0.00 0.00 0.00 5.80
210 211 1.139058 GTGATGACGTATTGAGGGCCT 59.861 52.381 5.25 5.25 0.00 5.19
211 212 1.412710 TGATGACGTATTGAGGGCCTC 59.587 52.381 26.95 26.95 0.00 4.70
212 213 1.689273 GATGACGTATTGAGGGCCTCT 59.311 52.381 32.28 17.22 0.00 3.69
213 214 1.568504 TGACGTATTGAGGGCCTCTT 58.431 50.000 32.28 21.99 0.00 2.85
214 215 1.906574 TGACGTATTGAGGGCCTCTTT 59.093 47.619 32.28 21.65 0.00 2.52
215 216 2.280628 GACGTATTGAGGGCCTCTTTG 58.719 52.381 32.28 19.52 0.00 2.77
216 217 1.906574 ACGTATTGAGGGCCTCTTTGA 59.093 47.619 32.28 16.76 0.00 2.69
217 218 2.505819 ACGTATTGAGGGCCTCTTTGAT 59.494 45.455 32.28 21.59 0.00 2.57
218 219 3.054361 ACGTATTGAGGGCCTCTTTGATT 60.054 43.478 32.28 12.29 0.00 2.57
219 220 3.561725 CGTATTGAGGGCCTCTTTGATTC 59.438 47.826 32.28 17.02 0.00 2.52
220 221 3.744940 ATTGAGGGCCTCTTTGATTCA 57.255 42.857 32.28 9.45 0.00 2.57
221 222 2.496899 TGAGGGCCTCTTTGATTCAC 57.503 50.000 32.28 4.82 0.00 3.18
222 223 1.704628 TGAGGGCCTCTTTGATTCACA 59.295 47.619 32.28 7.63 0.00 3.58
223 224 2.108075 TGAGGGCCTCTTTGATTCACAA 59.892 45.455 32.28 6.40 36.65 3.33
224 225 2.751806 GAGGGCCTCTTTGATTCACAAG 59.248 50.000 26.44 0.00 39.77 3.16
225 226 2.376518 AGGGCCTCTTTGATTCACAAGA 59.623 45.455 0.00 9.44 39.77 3.02
226 227 3.011032 AGGGCCTCTTTGATTCACAAGAT 59.989 43.478 0.00 0.00 39.77 2.40
227 228 3.766051 GGGCCTCTTTGATTCACAAGATT 59.234 43.478 0.84 0.00 39.77 2.40
228 229 4.221482 GGGCCTCTTTGATTCACAAGATTT 59.779 41.667 0.84 0.00 39.77 2.17
229 230 5.279657 GGGCCTCTTTGATTCACAAGATTTT 60.280 40.000 0.84 0.00 39.77 1.82
230 231 5.636543 GGCCTCTTTGATTCACAAGATTTTG 59.363 40.000 0.00 0.00 39.77 2.44
231 232 6.449698 GCCTCTTTGATTCACAAGATTTTGA 58.550 36.000 2.48 0.00 39.77 2.69
232 233 6.925165 GCCTCTTTGATTCACAAGATTTTGAA 59.075 34.615 2.48 0.00 39.77 2.69
233 234 7.439056 GCCTCTTTGATTCACAAGATTTTGAAA 59.561 33.333 2.48 0.00 39.77 2.69
234 235 9.316730 CCTCTTTGATTCACAAGATTTTGAAAA 57.683 29.630 2.48 0.00 39.77 2.29
237 238 9.377383 CTTTGATTCACAAGATTTTGAAAATGC 57.623 29.630 8.03 0.52 39.77 3.56
238 239 8.434733 TTGATTCACAAGATTTTGAAAATGCA 57.565 26.923 8.03 0.00 35.42 3.96
239 240 8.078959 TGATTCACAAGATTTTGAAAATGCAG 57.921 30.769 8.03 0.18 35.42 4.41
240 241 6.847956 TTCACAAGATTTTGAAAATGCAGG 57.152 33.333 8.03 0.00 37.73 4.85
241 242 6.159299 TCACAAGATTTTGAAAATGCAGGA 57.841 33.333 8.03 0.00 37.73 3.86
242 243 6.580788 TCACAAGATTTTGAAAATGCAGGAA 58.419 32.000 8.03 0.00 37.73 3.36
243 244 7.218614 TCACAAGATTTTGAAAATGCAGGAAT 58.781 30.769 8.03 0.00 37.73 3.01
244 245 8.366401 TCACAAGATTTTGAAAATGCAGGAATA 58.634 29.630 8.03 0.00 37.73 1.75
245 246 8.653338 CACAAGATTTTGAAAATGCAGGAATAG 58.347 33.333 8.03 0.00 37.73 1.73
246 247 7.820872 ACAAGATTTTGAAAATGCAGGAATAGG 59.179 33.333 8.03 0.00 37.73 2.57
247 248 7.722949 AGATTTTGAAAATGCAGGAATAGGA 57.277 32.000 8.03 0.00 0.00 2.94
248 249 8.137745 AGATTTTGAAAATGCAGGAATAGGAA 57.862 30.769 8.03 0.00 0.00 3.36
249 250 8.596293 AGATTTTGAAAATGCAGGAATAGGAAA 58.404 29.630 8.03 0.00 0.00 3.13
250 251 9.218440 GATTTTGAAAATGCAGGAATAGGAAAA 57.782 29.630 8.03 0.00 0.00 2.29
251 252 8.606040 TTTTGAAAATGCAGGAATAGGAAAAG 57.394 30.769 0.00 0.00 0.00 2.27
252 253 6.916360 TGAAAATGCAGGAATAGGAAAAGT 57.084 33.333 0.00 0.00 0.00 2.66
253 254 8.415950 TTGAAAATGCAGGAATAGGAAAAGTA 57.584 30.769 0.00 0.00 0.00 2.24
254 255 8.593945 TGAAAATGCAGGAATAGGAAAAGTAT 57.406 30.769 0.00 0.00 0.00 2.12
255 256 9.693739 TGAAAATGCAGGAATAGGAAAAGTATA 57.306 29.630 0.00 0.00 0.00 1.47
257 258 8.697507 AAATGCAGGAATAGGAAAAGTATAGG 57.302 34.615 0.00 0.00 0.00 2.57
258 259 7.633018 ATGCAGGAATAGGAAAAGTATAGGA 57.367 36.000 0.00 0.00 0.00 2.94
259 260 7.633018 TGCAGGAATAGGAAAAGTATAGGAT 57.367 36.000 0.00 0.00 0.00 3.24
260 261 8.045720 TGCAGGAATAGGAAAAGTATAGGATT 57.954 34.615 0.00 0.00 0.00 3.01
261 262 7.939039 TGCAGGAATAGGAAAAGTATAGGATTG 59.061 37.037 0.00 0.00 0.00 2.67
262 263 7.391833 GCAGGAATAGGAAAAGTATAGGATTGG 59.608 40.741 0.00 0.00 0.00 3.16
263 264 8.660435 CAGGAATAGGAAAAGTATAGGATTGGA 58.340 37.037 0.00 0.00 0.00 3.53
264 265 8.885346 AGGAATAGGAAAAGTATAGGATTGGAG 58.115 37.037 0.00 0.00 0.00 3.86
265 266 8.661345 GGAATAGGAAAAGTATAGGATTGGAGT 58.339 37.037 0.00 0.00 0.00 3.85
266 267 9.495572 GAATAGGAAAAGTATAGGATTGGAGTG 57.504 37.037 0.00 0.00 0.00 3.51
267 268 6.893020 AGGAAAAGTATAGGATTGGAGTGT 57.107 37.500 0.00 0.00 0.00 3.55
268 269 6.890293 AGGAAAAGTATAGGATTGGAGTGTC 58.110 40.000 0.00 0.00 0.00 3.67
269 270 6.443849 AGGAAAAGTATAGGATTGGAGTGTCA 59.556 38.462 0.00 0.00 0.00 3.58
270 271 7.127955 AGGAAAAGTATAGGATTGGAGTGTCAT 59.872 37.037 0.00 0.00 0.00 3.06
271 272 7.227512 GGAAAAGTATAGGATTGGAGTGTCATG 59.772 40.741 0.00 0.00 0.00 3.07
272 273 5.220710 AGTATAGGATTGGAGTGTCATGC 57.779 43.478 0.00 0.00 0.00 4.06
273 274 3.498774 ATAGGATTGGAGTGTCATGCC 57.501 47.619 0.00 0.00 0.00 4.40
274 275 0.257039 AGGATTGGAGTGTCATGCCC 59.743 55.000 0.00 0.00 0.00 5.36
275 276 0.034186 GGATTGGAGTGTCATGCCCA 60.034 55.000 0.00 0.00 0.00 5.36
276 277 1.098050 GATTGGAGTGTCATGCCCAC 58.902 55.000 7.12 7.12 0.00 4.61
277 278 0.700564 ATTGGAGTGTCATGCCCACT 59.299 50.000 15.18 15.18 45.52 4.00
278 279 0.478072 TTGGAGTGTCATGCCCACTT 59.522 50.000 16.03 4.09 43.00 3.16
279 280 0.250858 TGGAGTGTCATGCCCACTTG 60.251 55.000 16.03 0.00 43.00 3.16
280 281 0.036732 GGAGTGTCATGCCCACTTGA 59.963 55.000 16.03 0.00 43.00 3.02
281 282 1.545428 GGAGTGTCATGCCCACTTGAA 60.545 52.381 16.03 0.00 43.00 2.69
282 283 2.440409 GAGTGTCATGCCCACTTGAAT 58.560 47.619 16.03 0.00 43.00 2.57
283 284 2.421424 GAGTGTCATGCCCACTTGAATC 59.579 50.000 16.03 3.62 43.00 2.52
284 285 1.474077 GTGTCATGCCCACTTGAATCC 59.526 52.381 7.78 0.00 32.30 3.01
285 286 1.355381 TGTCATGCCCACTTGAATCCT 59.645 47.619 0.00 0.00 32.30 3.24
286 287 2.575735 TGTCATGCCCACTTGAATCCTA 59.424 45.455 0.00 0.00 32.30 2.94
287 288 3.202818 TGTCATGCCCACTTGAATCCTAT 59.797 43.478 0.00 0.00 32.30 2.57
288 289 4.411869 TGTCATGCCCACTTGAATCCTATA 59.588 41.667 0.00 0.00 32.30 1.31
289 290 4.999950 GTCATGCCCACTTGAATCCTATAG 59.000 45.833 0.00 0.00 32.30 1.31
290 291 4.042062 TCATGCCCACTTGAATCCTATAGG 59.958 45.833 13.07 13.07 0.00 2.57
308 309 9.042450 TCCTATAGGATTAACAAGAGTGTTTGA 57.958 33.333 18.00 0.00 41.40 2.69
309 310 9.838339 CCTATAGGATTAACAAGAGTGTTTGAT 57.162 33.333 14.11 0.00 40.52 2.57
313 314 8.463930 AGGATTAACAAGAGTGTTTGATTTCA 57.536 30.769 0.00 0.00 46.01 2.69
314 315 8.352942 AGGATTAACAAGAGTGTTTGATTTCAC 58.647 33.333 0.00 0.00 46.01 3.18
315 316 7.323656 GGATTAACAAGAGTGTTTGATTTCACG 59.676 37.037 0.00 0.00 46.01 4.35
316 317 4.552166 ACAAGAGTGTTTGATTTCACGG 57.448 40.909 0.00 0.00 39.25 4.94
317 318 3.315191 ACAAGAGTGTTTGATTTCACGGG 59.685 43.478 0.00 0.00 39.25 5.28
318 319 3.485463 AGAGTGTTTGATTTCACGGGA 57.515 42.857 0.00 0.00 39.25 5.14
319 320 3.815809 AGAGTGTTTGATTTCACGGGAA 58.184 40.909 0.00 0.00 39.25 3.97
320 321 4.204012 AGAGTGTTTGATTTCACGGGAAA 58.796 39.130 16.48 16.48 46.36 3.13
321 322 4.642885 AGAGTGTTTGATTTCACGGGAAAA 59.357 37.500 18.20 0.00 45.52 2.29
322 323 4.932146 AGTGTTTGATTTCACGGGAAAAG 58.068 39.130 18.20 0.00 45.52 2.27
323 324 3.489416 GTGTTTGATTTCACGGGAAAAGC 59.511 43.478 18.20 12.74 45.52 3.51
324 325 3.131223 TGTTTGATTTCACGGGAAAAGCA 59.869 39.130 18.20 15.23 45.52 3.91
325 326 4.116238 GTTTGATTTCACGGGAAAAGCAA 58.884 39.130 18.20 19.92 45.52 3.91
326 327 4.392921 TTGATTTCACGGGAAAAGCAAA 57.607 36.364 18.20 6.51 45.52 3.68
327 328 3.976169 TGATTTCACGGGAAAAGCAAAG 58.024 40.909 18.20 0.00 45.52 2.77
328 329 3.634448 TGATTTCACGGGAAAAGCAAAGA 59.366 39.130 18.20 0.00 45.52 2.52
329 330 4.098654 TGATTTCACGGGAAAAGCAAAGAA 59.901 37.500 18.20 0.00 45.52 2.52
330 331 4.457834 TTTCACGGGAAAAGCAAAGAAA 57.542 36.364 11.17 0.00 39.96 2.52
331 332 4.664150 TTCACGGGAAAAGCAAAGAAAT 57.336 36.364 0.00 0.00 0.00 2.17
332 333 4.664150 TCACGGGAAAAGCAAAGAAATT 57.336 36.364 0.00 0.00 0.00 1.82
333 334 4.367450 TCACGGGAAAAGCAAAGAAATTG 58.633 39.130 0.00 0.00 42.21 2.32
334 335 3.494251 CACGGGAAAAGCAAAGAAATTGG 59.506 43.478 0.00 0.00 39.54 3.16
335 336 3.386402 ACGGGAAAAGCAAAGAAATTGGA 59.614 39.130 0.00 0.00 39.54 3.53
336 337 4.141824 ACGGGAAAAGCAAAGAAATTGGAA 60.142 37.500 0.00 0.00 39.54 3.53
337 338 4.813697 CGGGAAAAGCAAAGAAATTGGAAA 59.186 37.500 0.00 0.00 39.54 3.13
338 339 5.295540 CGGGAAAAGCAAAGAAATTGGAAAA 59.704 36.000 0.00 0.00 39.54 2.29
339 340 6.183360 CGGGAAAAGCAAAGAAATTGGAAAAA 60.183 34.615 0.00 0.00 39.54 1.94
340 341 7.195646 GGGAAAAGCAAAGAAATTGGAAAAAG 58.804 34.615 0.00 0.00 39.54 2.27
341 342 7.066887 GGGAAAAGCAAAGAAATTGGAAAAAGA 59.933 33.333 0.00 0.00 39.54 2.52
342 343 8.124823 GGAAAAGCAAAGAAATTGGAAAAAGAG 58.875 33.333 0.00 0.00 39.54 2.85
343 344 7.558161 AAAGCAAAGAAATTGGAAAAAGAGG 57.442 32.000 0.00 0.00 39.54 3.69
344 345 6.239217 AGCAAAGAAATTGGAAAAAGAGGT 57.761 33.333 0.00 0.00 39.54 3.85
345 346 6.653020 AGCAAAGAAATTGGAAAAAGAGGTT 58.347 32.000 0.00 0.00 39.54 3.50
346 347 6.539826 AGCAAAGAAATTGGAAAAAGAGGTTG 59.460 34.615 0.00 0.00 39.54 3.77
347 348 6.538381 GCAAAGAAATTGGAAAAAGAGGTTGA 59.462 34.615 0.00 0.00 39.54 3.18
348 349 7.065683 GCAAAGAAATTGGAAAAAGAGGTTGAA 59.934 33.333 0.00 0.00 39.54 2.69
349 350 8.606602 CAAAGAAATTGGAAAAAGAGGTTGAAG 58.393 33.333 0.00 0.00 35.27 3.02
350 351 7.423844 AGAAATTGGAAAAAGAGGTTGAAGT 57.576 32.000 0.00 0.00 0.00 3.01
351 352 7.267857 AGAAATTGGAAAAAGAGGTTGAAGTG 58.732 34.615 0.00 0.00 0.00 3.16
352 353 5.535753 ATTGGAAAAAGAGGTTGAAGTGG 57.464 39.130 0.00 0.00 0.00 4.00
353 354 4.243793 TGGAAAAAGAGGTTGAAGTGGA 57.756 40.909 0.00 0.00 0.00 4.02
354 355 4.803452 TGGAAAAAGAGGTTGAAGTGGAT 58.197 39.130 0.00 0.00 0.00 3.41
355 356 4.584325 TGGAAAAAGAGGTTGAAGTGGATG 59.416 41.667 0.00 0.00 0.00 3.51
356 357 4.584743 GGAAAAAGAGGTTGAAGTGGATGT 59.415 41.667 0.00 0.00 0.00 3.06
357 358 5.069119 GGAAAAAGAGGTTGAAGTGGATGTT 59.931 40.000 0.00 0.00 0.00 2.71
358 359 6.264518 GGAAAAAGAGGTTGAAGTGGATGTTA 59.735 38.462 0.00 0.00 0.00 2.41
359 360 6.884280 AAAAGAGGTTGAAGTGGATGTTAG 57.116 37.500 0.00 0.00 0.00 2.34
360 361 5.825593 AAGAGGTTGAAGTGGATGTTAGA 57.174 39.130 0.00 0.00 0.00 2.10
361 362 6.380079 AAGAGGTTGAAGTGGATGTTAGAT 57.620 37.500 0.00 0.00 0.00 1.98
362 363 6.380079 AGAGGTTGAAGTGGATGTTAGATT 57.620 37.500 0.00 0.00 0.00 2.40
363 364 6.784031 AGAGGTTGAAGTGGATGTTAGATTT 58.216 36.000 0.00 0.00 0.00 2.17
364 365 6.881602 AGAGGTTGAAGTGGATGTTAGATTTC 59.118 38.462 0.00 0.00 0.00 2.17
365 366 5.946377 AGGTTGAAGTGGATGTTAGATTTCC 59.054 40.000 0.00 0.00 0.00 3.13
366 367 5.946377 GGTTGAAGTGGATGTTAGATTTCCT 59.054 40.000 0.00 0.00 0.00 3.36
367 368 7.037586 AGGTTGAAGTGGATGTTAGATTTCCTA 60.038 37.037 0.00 0.00 0.00 2.94
368 369 7.775561 GGTTGAAGTGGATGTTAGATTTCCTAT 59.224 37.037 0.00 0.00 0.00 2.57
369 370 8.616076 GTTGAAGTGGATGTTAGATTTCCTATG 58.384 37.037 0.00 0.00 0.00 2.23
370 371 8.089625 TGAAGTGGATGTTAGATTTCCTATGA 57.910 34.615 0.00 0.00 0.00 2.15
371 372 8.548025 TGAAGTGGATGTTAGATTTCCTATGAA 58.452 33.333 0.00 0.00 0.00 2.57
372 373 9.396022 GAAGTGGATGTTAGATTTCCTATGAAA 57.604 33.333 0.00 0.00 44.22 2.69
393 394 8.842358 TGAAATCTAGTACAAAAGATTCCGTT 57.158 30.769 14.70 4.06 40.66 4.44
394 395 8.717821 TGAAATCTAGTACAAAAGATTCCGTTG 58.282 33.333 14.70 0.00 40.66 4.10
395 396 7.611213 AATCTAGTACAAAAGATTCCGTTGG 57.389 36.000 10.62 0.00 37.83 3.77
396 397 6.349243 TCTAGTACAAAAGATTCCGTTGGA 57.651 37.500 0.00 0.00 0.00 3.53
397 398 6.761312 TCTAGTACAAAAGATTCCGTTGGAA 58.239 36.000 0.00 0.00 46.39 3.53
398 399 7.218614 TCTAGTACAAAAGATTCCGTTGGAAA 58.781 34.615 1.86 0.00 45.41 3.13
399 400 6.702716 AGTACAAAAGATTCCGTTGGAAAA 57.297 33.333 1.86 0.00 45.41 2.29
400 401 7.102847 AGTACAAAAGATTCCGTTGGAAAAA 57.897 32.000 1.86 0.00 45.41 1.94
401 402 7.722363 AGTACAAAAGATTCCGTTGGAAAAAT 58.278 30.769 1.86 0.00 45.41 1.82
402 403 8.201464 AGTACAAAAGATTCCGTTGGAAAAATT 58.799 29.630 1.86 0.00 45.41 1.82
403 404 7.477144 ACAAAAGATTCCGTTGGAAAAATTC 57.523 32.000 1.86 0.00 45.41 2.17
404 405 6.481976 ACAAAAGATTCCGTTGGAAAAATTCC 59.518 34.615 1.86 2.12 45.41 3.01
418 419 7.043961 GGAAAAATTCCTATGGGACTCAATC 57.956 40.000 0.00 0.00 46.57 2.67
419 420 6.040955 GGAAAAATTCCTATGGGACTCAATCC 59.959 42.308 0.00 0.00 46.57 3.01
420 421 8.077666 GGAAAAATTCCTATGGGACTCAATCCT 61.078 40.741 0.00 0.00 45.98 3.24
429 430 6.520021 ATGGGACTCAATCCTATGAATCAA 57.480 37.500 0.00 0.00 46.61 2.57
430 431 6.914665 ATGGGACTCAATCCTATGAATCAAA 58.085 36.000 0.00 0.00 46.61 2.69
431 432 7.002879 ATGGGACTCAATCCTATGAATCAAAG 58.997 38.462 0.00 0.00 46.61 2.77
432 433 7.147248 ATGGGACTCAATCCTATGAATCAAAGA 60.147 37.037 0.00 0.00 46.61 2.52
434 435 7.924940 GGACTCAATCCTATGAATCAAAGAAC 58.075 38.462 0.00 0.00 45.22 3.01
435 436 7.554118 GGACTCAATCCTATGAATCAAAGAACA 59.446 37.037 0.00 0.00 45.22 3.18
436 437 8.868522 ACTCAATCCTATGAATCAAAGAACAA 57.131 30.769 0.00 0.00 0.00 2.83
437 438 9.300681 ACTCAATCCTATGAATCAAAGAACAAA 57.699 29.630 0.00 0.00 0.00 2.83
438 439 9.565213 CTCAATCCTATGAATCAAAGAACAAAC 57.435 33.333 0.00 0.00 0.00 2.93
439 440 9.076781 TCAATCCTATGAATCAAAGAACAAACA 57.923 29.630 0.00 0.00 0.00 2.83
440 441 9.865321 CAATCCTATGAATCAAAGAACAAACAT 57.135 29.630 0.00 0.00 0.00 2.71
468 469 8.437360 GAAAAATTCCAAAGTGTTTCAATCCT 57.563 30.769 0.00 0.00 0.00 3.24
469 470 8.437360 AAAAATTCCAAAGTGTTTCAATCCTC 57.563 30.769 0.00 0.00 0.00 3.71
470 471 5.728637 ATTCCAAAGTGTTTCAATCCTCC 57.271 39.130 0.00 0.00 0.00 4.30
471 472 4.177537 TCCAAAGTGTTTCAATCCTCCA 57.822 40.909 0.00 0.00 0.00 3.86
472 473 4.541705 TCCAAAGTGTTTCAATCCTCCAA 58.458 39.130 0.00 0.00 0.00 3.53
473 474 4.959210 TCCAAAGTGTTTCAATCCTCCAAA 59.041 37.500 0.00 0.00 0.00 3.28
474 475 5.423610 TCCAAAGTGTTTCAATCCTCCAAAA 59.576 36.000 0.00 0.00 0.00 2.44
475 476 6.070538 TCCAAAGTGTTTCAATCCTCCAAAAA 60.071 34.615 0.00 0.00 0.00 1.94
476 477 6.767423 CCAAAGTGTTTCAATCCTCCAAAAAT 59.233 34.615 0.00 0.00 0.00 1.82
477 478 7.041848 CCAAAGTGTTTCAATCCTCCAAAAATC 60.042 37.037 0.00 0.00 0.00 2.17
478 479 6.101650 AGTGTTTCAATCCTCCAAAAATCC 57.898 37.500 0.00 0.00 0.00 3.01
479 480 5.840693 AGTGTTTCAATCCTCCAAAAATCCT 59.159 36.000 0.00 0.00 0.00 3.24
480 481 7.010160 AGTGTTTCAATCCTCCAAAAATCCTA 58.990 34.615 0.00 0.00 0.00 2.94
481 482 7.675619 AGTGTTTCAATCCTCCAAAAATCCTAT 59.324 33.333 0.00 0.00 0.00 2.57
482 483 8.966868 GTGTTTCAATCCTCCAAAAATCCTATA 58.033 33.333 0.00 0.00 0.00 1.31
483 484 9.189156 TGTTTCAATCCTCCAAAAATCCTATAG 57.811 33.333 0.00 0.00 0.00 1.31
484 485 9.408648 GTTTCAATCCTCCAAAAATCCTATAGA 57.591 33.333 0.00 0.00 0.00 1.98
485 486 9.989296 TTTCAATCCTCCAAAAATCCTATAGAA 57.011 29.630 0.00 0.00 0.00 2.10
489 490 9.593565 AATCCTCCAAAAATCCTATAGAATTCC 57.406 33.333 0.00 0.00 0.00 3.01
490 491 8.350180 TCCTCCAAAAATCCTATAGAATTCCT 57.650 34.615 0.00 0.00 0.00 3.36
491 492 8.791749 TCCTCCAAAAATCCTATAGAATTCCTT 58.208 33.333 0.00 0.00 0.00 3.36
492 493 9.426534 CCTCCAAAAATCCTATAGAATTCCTTT 57.573 33.333 0.00 0.00 0.00 3.11
494 495 9.989296 TCCAAAAATCCTATAGAATTCCTTTGA 57.011 29.630 9.31 0.00 0.00 2.69
509 510 3.863142 CTTTGAATCAAAGGAGGCCTG 57.137 47.619 23.96 0.00 44.75 4.85
510 511 3.424703 CTTTGAATCAAAGGAGGCCTGA 58.575 45.455 23.96 0.60 44.75 3.86
511 512 3.524095 TTGAATCAAAGGAGGCCTGAA 57.476 42.857 12.00 0.00 32.13 3.02
512 513 3.524095 TGAATCAAAGGAGGCCTGAAA 57.476 42.857 12.00 0.00 32.13 2.69
513 514 4.051661 TGAATCAAAGGAGGCCTGAAAT 57.948 40.909 12.00 0.00 32.13 2.17
514 515 5.191727 TGAATCAAAGGAGGCCTGAAATA 57.808 39.130 12.00 0.00 32.13 1.40
515 516 5.195940 TGAATCAAAGGAGGCCTGAAATAG 58.804 41.667 12.00 0.00 32.13 1.73
516 517 5.044919 TGAATCAAAGGAGGCCTGAAATAGA 60.045 40.000 12.00 0.62 32.13 1.98
517 518 4.927267 TCAAAGGAGGCCTGAAATAGAA 57.073 40.909 12.00 0.00 32.13 2.10
518 519 4.589908 TCAAAGGAGGCCTGAAATAGAAC 58.410 43.478 12.00 0.00 32.13 3.01
519 520 2.990066 AGGAGGCCTGAAATAGAACG 57.010 50.000 12.00 0.00 29.57 3.95
520 521 2.467880 AGGAGGCCTGAAATAGAACGA 58.532 47.619 12.00 0.00 29.57 3.85
521 522 2.432510 AGGAGGCCTGAAATAGAACGAG 59.567 50.000 12.00 0.00 29.57 4.18
522 523 2.431057 GGAGGCCTGAAATAGAACGAGA 59.569 50.000 12.00 0.00 0.00 4.04
523 524 3.449632 GAGGCCTGAAATAGAACGAGAC 58.550 50.000 12.00 0.00 0.00 3.36
524 525 2.159226 AGGCCTGAAATAGAACGAGACG 60.159 50.000 3.11 0.00 0.00 4.18
525 526 2.416972 GGCCTGAAATAGAACGAGACGT 60.417 50.000 0.00 0.00 43.97 4.34
526 527 3.181493 GGCCTGAAATAGAACGAGACGTA 60.181 47.826 0.00 0.00 39.99 3.57
527 528 4.418392 GCCTGAAATAGAACGAGACGTAA 58.582 43.478 0.00 0.00 39.99 3.18
528 529 5.041940 GCCTGAAATAGAACGAGACGTAAT 58.958 41.667 0.00 0.00 39.99 1.89
529 530 5.173492 GCCTGAAATAGAACGAGACGTAATC 59.827 44.000 0.00 0.00 39.99 1.75
530 531 6.496571 CCTGAAATAGAACGAGACGTAATCT 58.503 40.000 0.00 0.00 39.99 2.40
531 532 6.415280 CCTGAAATAGAACGAGACGTAATCTG 59.585 42.308 8.20 0.00 39.99 2.90
532 533 7.080353 TGAAATAGAACGAGACGTAATCTGA 57.920 36.000 8.20 0.00 39.99 3.27
533 534 7.704271 TGAAATAGAACGAGACGTAATCTGAT 58.296 34.615 8.20 0.00 39.99 2.90
534 535 8.833493 TGAAATAGAACGAGACGTAATCTGATA 58.167 33.333 8.20 0.00 39.99 2.15
535 536 9.320406 GAAATAGAACGAGACGTAATCTGATAG 57.680 37.037 8.20 0.00 39.99 2.08
536 537 7.966246 ATAGAACGAGACGTAATCTGATAGT 57.034 36.000 8.20 0.00 39.99 2.12
537 538 9.486497 AATAGAACGAGACGTAATCTGATAGTA 57.514 33.333 8.20 0.00 39.99 1.82
538 539 7.783090 AGAACGAGACGTAATCTGATAGTAA 57.217 36.000 0.00 0.00 39.99 2.24
539 540 8.380743 AGAACGAGACGTAATCTGATAGTAAT 57.619 34.615 0.00 0.00 39.99 1.89
540 541 8.283992 AGAACGAGACGTAATCTGATAGTAATG 58.716 37.037 0.00 0.00 39.99 1.90
541 542 7.725818 ACGAGACGTAATCTGATAGTAATGA 57.274 36.000 0.00 0.00 38.73 2.57
542 543 8.151141 ACGAGACGTAATCTGATAGTAATGAA 57.849 34.615 0.00 0.00 38.73 2.57
543 544 8.618677 ACGAGACGTAATCTGATAGTAATGAAA 58.381 33.333 0.00 0.00 38.73 2.69
544 545 9.447040 CGAGACGTAATCTGATAGTAATGAAAA 57.553 33.333 0.00 0.00 38.00 2.29
565 566 9.844790 TGAAAAATTGTGTCTATTGATGATGAC 57.155 29.630 0.00 0.00 0.00 3.06
566 567 9.844790 GAAAAATTGTGTCTATTGATGATGACA 57.155 29.630 0.00 0.00 37.14 3.58
568 569 9.850628 AAAATTGTGTCTATTGATGATGACAAG 57.149 29.630 0.00 0.00 40.47 3.16
569 570 8.571461 AATTGTGTCTATTGATGATGACAAGT 57.429 30.769 0.00 0.00 40.47 3.16
570 571 7.984422 TTGTGTCTATTGATGATGACAAGTT 57.016 32.000 0.00 0.00 40.47 2.66
571 572 9.671279 ATTGTGTCTATTGATGATGACAAGTTA 57.329 29.630 0.00 0.00 40.47 2.24
572 573 8.479313 TGTGTCTATTGATGATGACAAGTTAC 57.521 34.615 0.00 0.00 40.47 2.50
573 574 8.093927 TGTGTCTATTGATGATGACAAGTTACA 58.906 33.333 0.00 0.00 40.47 2.41
574 575 9.102757 GTGTCTATTGATGATGACAAGTTACAT 57.897 33.333 0.00 0.00 40.47 2.29
588 589 8.145767 TGACAAGTTACATATTTATAGTCCCCG 58.854 37.037 0.00 0.00 0.00 5.73
589 590 8.253867 ACAAGTTACATATTTATAGTCCCCGA 57.746 34.615 0.00 0.00 0.00 5.14
590 591 8.707449 ACAAGTTACATATTTATAGTCCCCGAA 58.293 33.333 0.00 0.00 0.00 4.30
591 592 9.204570 CAAGTTACATATTTATAGTCCCCGAAG 57.795 37.037 0.00 0.00 0.00 3.79
592 593 8.716674 AGTTACATATTTATAGTCCCCGAAGA 57.283 34.615 0.00 0.00 0.00 2.87
593 594 8.804204 AGTTACATATTTATAGTCCCCGAAGAG 58.196 37.037 0.00 0.00 0.00 2.85
594 595 6.607004 ACATATTTATAGTCCCCGAAGAGG 57.393 41.667 0.00 0.00 40.63 3.69
595 596 6.082707 ACATATTTATAGTCCCCGAAGAGGT 58.917 40.000 0.00 0.00 38.74 3.85
596 597 4.957684 ATTTATAGTCCCCGAAGAGGTG 57.042 45.455 0.00 0.00 38.74 4.00
597 598 1.700955 TATAGTCCCCGAAGAGGTGC 58.299 55.000 0.00 0.00 38.74 5.01
598 599 0.325296 ATAGTCCCCGAAGAGGTGCA 60.325 55.000 0.00 0.00 38.74 4.57
599 600 0.325296 TAGTCCCCGAAGAGGTGCAT 60.325 55.000 0.00 0.00 38.74 3.96
600 601 1.153349 GTCCCCGAAGAGGTGCATC 60.153 63.158 0.00 0.00 38.74 3.91
601 602 2.190578 CCCCGAAGAGGTGCATCC 59.809 66.667 0.00 0.00 38.74 3.51
602 603 2.202932 CCCGAAGAGGTGCATCCG 60.203 66.667 0.00 0.00 41.99 4.18
603 604 2.202932 CCGAAGAGGTGCATCCGG 60.203 66.667 0.00 0.00 41.99 5.14
604 605 2.721167 CCGAAGAGGTGCATCCGGA 61.721 63.158 6.61 6.61 41.99 5.14
605 606 1.227089 CGAAGAGGTGCATCCGGAG 60.227 63.158 11.34 3.17 41.99 4.63
621 622 1.549203 GGAGGGACACTACGGTTACA 58.451 55.000 0.00 0.00 0.00 2.41
622 623 1.895131 GGAGGGACACTACGGTTACAA 59.105 52.381 0.00 0.00 0.00 2.41
623 624 2.094338 GGAGGGACACTACGGTTACAAG 60.094 54.545 0.00 0.00 0.00 3.16
624 625 2.821969 GAGGGACACTACGGTTACAAGA 59.178 50.000 0.00 0.00 0.00 3.02
625 626 2.824341 AGGGACACTACGGTTACAAGAG 59.176 50.000 0.00 0.00 0.00 2.85
626 627 2.560105 GGGACACTACGGTTACAAGAGT 59.440 50.000 0.00 0.00 0.00 3.24
627 628 3.006217 GGGACACTACGGTTACAAGAGTT 59.994 47.826 0.00 0.00 0.00 3.01
628 629 3.985925 GGACACTACGGTTACAAGAGTTG 59.014 47.826 0.00 0.00 0.00 3.16
629 630 3.387397 ACACTACGGTTACAAGAGTTGC 58.613 45.455 0.00 0.00 0.00 4.17
630 631 3.181473 ACACTACGGTTACAAGAGTTGCA 60.181 43.478 0.00 0.00 0.00 4.08
631 632 3.994392 CACTACGGTTACAAGAGTTGCAT 59.006 43.478 0.00 0.00 0.00 3.96
632 633 4.091509 CACTACGGTTACAAGAGTTGCATC 59.908 45.833 0.00 0.00 0.00 3.91
633 634 3.402628 ACGGTTACAAGAGTTGCATCT 57.597 42.857 0.00 0.00 0.00 2.90
634 635 3.326747 ACGGTTACAAGAGTTGCATCTC 58.673 45.455 15.66 15.66 34.96 2.75
635 636 3.006967 ACGGTTACAAGAGTTGCATCTCT 59.993 43.478 19.51 19.51 45.36 3.10
647 648 7.790027 AGAGTTGCATCTCTTTATATGACAGT 58.210 34.615 19.51 0.00 41.36 3.55
648 649 8.263640 AGAGTTGCATCTCTTTATATGACAGTT 58.736 33.333 19.51 0.00 41.36 3.16
649 650 8.798859 AGTTGCATCTCTTTATATGACAGTTT 57.201 30.769 0.00 0.00 0.00 2.66
650 651 8.671921 AGTTGCATCTCTTTATATGACAGTTTG 58.328 33.333 0.00 0.00 0.00 2.93
651 652 7.558161 TGCATCTCTTTATATGACAGTTTGG 57.442 36.000 0.00 0.00 0.00 3.28
652 653 7.337938 TGCATCTCTTTATATGACAGTTTGGA 58.662 34.615 0.00 0.00 0.00 3.53
653 654 7.994911 TGCATCTCTTTATATGACAGTTTGGAT 59.005 33.333 0.00 0.00 0.00 3.41
654 655 9.494271 GCATCTCTTTATATGACAGTTTGGATA 57.506 33.333 0.00 0.00 0.00 2.59
659 660 9.613428 TCTTTATATGACAGTTTGGATAAGTGG 57.387 33.333 0.00 0.00 0.00 4.00
660 661 9.613428 CTTTATATGACAGTTTGGATAAGTGGA 57.387 33.333 0.00 0.00 0.00 4.02
661 662 9.613428 TTTATATGACAGTTTGGATAAGTGGAG 57.387 33.333 0.00 0.00 0.00 3.86
662 663 5.762179 ATGACAGTTTGGATAAGTGGAGA 57.238 39.130 0.00 0.00 0.00 3.71
663 664 5.762179 TGACAGTTTGGATAAGTGGAGAT 57.238 39.130 0.00 0.00 0.00 2.75
664 665 6.126863 TGACAGTTTGGATAAGTGGAGATT 57.873 37.500 0.00 0.00 0.00 2.40
665 666 6.542821 TGACAGTTTGGATAAGTGGAGATTT 58.457 36.000 0.00 0.00 0.00 2.17
666 667 7.685481 TGACAGTTTGGATAAGTGGAGATTTA 58.315 34.615 0.00 0.00 0.00 1.40
667 668 8.160765 TGACAGTTTGGATAAGTGGAGATTTAA 58.839 33.333 0.00 0.00 0.00 1.52
668 669 9.178758 GACAGTTTGGATAAGTGGAGATTTAAT 57.821 33.333 0.00 0.00 0.00 1.40
669 670 9.178758 ACAGTTTGGATAAGTGGAGATTTAATC 57.821 33.333 0.00 0.00 0.00 1.75
670 671 9.401058 CAGTTTGGATAAGTGGAGATTTAATCT 57.599 33.333 7.23 7.23 43.70 2.40
722 723 0.908910 TTCACCACACGCCTATCCAT 59.091 50.000 0.00 0.00 0.00 3.41
731 732 0.392706 CGCCTATCCATACTGCCACA 59.607 55.000 0.00 0.00 0.00 4.17
761 762 2.510238 CTTCTTCGCCGCTCCAGG 60.510 66.667 0.00 0.00 0.00 4.45
790 791 2.680352 TTCCTCTCCTCGCCGCTT 60.680 61.111 0.00 0.00 0.00 4.68
887 888 0.469917 CCCAACGGCTGATACTCCAT 59.530 55.000 0.00 0.00 0.00 3.41
922 923 3.278592 GACGTTCGGTTCGGCCTCT 62.279 63.158 0.00 0.00 34.25 3.69
996 997 4.415150 CTGGACAGGCCGCACCAT 62.415 66.667 15.79 0.00 43.14 3.55
1022 1023 4.286297 TGAACTTCCAGGATGTCGAAAT 57.714 40.909 8.43 0.00 0.00 2.17
1025 1026 2.290260 ACTTCCAGGATGTCGAAATGCA 60.290 45.455 9.99 0.00 0.00 3.96
1075 1077 2.879026 CCTCGTCTTATCACGGATCAGA 59.121 50.000 0.00 0.00 40.35 3.27
1084 1086 2.180769 CGGATCAGAACCGTGCGA 59.819 61.111 10.93 0.00 44.57 5.10
1244 1249 2.579201 CGAGGAGCGGTTGGACAT 59.421 61.111 0.00 0.00 36.03 3.06
1249 1254 1.447140 GAGCGGTTGGACATGCGTA 60.447 57.895 0.00 0.00 0.00 4.42
1348 1354 0.770499 TTGGGAAGACATGTGGCTCA 59.230 50.000 1.15 0.00 29.30 4.26
1369 1375 2.435120 TACCTCGGACCAGACCAGCA 62.435 60.000 0.00 0.00 0.00 4.41
1415 1427 0.747852 GACTGGGAGTAGGCTGTAGC 59.252 60.000 0.00 0.00 41.14 3.58
1417 1429 1.569548 ACTGGGAGTAGGCTGTAGCTA 59.430 52.381 0.00 0.00 41.70 3.32
1663 1693 2.676471 GGCCGCATCAAACCAGGT 60.676 61.111 0.00 0.00 0.00 4.00
1693 1723 2.035193 TGCGGCAAATGAGTTTTTAGCA 59.965 40.909 0.00 0.00 0.00 3.49
1730 1760 1.432514 GCGACTGTTGAAGATGCTCA 58.567 50.000 0.00 0.00 0.00 4.26
1731 1761 1.800586 GCGACTGTTGAAGATGCTCAA 59.199 47.619 0.00 0.00 32.89 3.02
1735 1765 5.455392 CGACTGTTGAAGATGCTCAAAAAT 58.545 37.500 0.00 0.00 37.08 1.82
1737 1767 7.077605 CGACTGTTGAAGATGCTCAAAAATAA 58.922 34.615 0.00 0.00 37.08 1.40
1738 1768 7.269937 CGACTGTTGAAGATGCTCAAAAATAAG 59.730 37.037 0.00 0.00 37.08 1.73
1739 1769 7.373493 ACTGTTGAAGATGCTCAAAAATAAGG 58.627 34.615 0.00 0.00 37.08 2.69
1740 1770 7.231317 ACTGTTGAAGATGCTCAAAAATAAGGA 59.769 33.333 0.00 0.00 37.08 3.36
1741 1771 7.950512 TGTTGAAGATGCTCAAAAATAAGGAA 58.049 30.769 0.00 0.00 37.08 3.36
1742 1772 8.420222 TGTTGAAGATGCTCAAAAATAAGGAAA 58.580 29.630 0.00 0.00 37.08 3.13
1743 1773 9.260002 GTTGAAGATGCTCAAAAATAAGGAAAA 57.740 29.630 0.00 0.00 37.08 2.29
1744 1774 9.480053 TTGAAGATGCTCAAAAATAAGGAAAAG 57.520 29.630 0.00 0.00 32.39 2.27
1745 1775 8.090214 TGAAGATGCTCAAAAATAAGGAAAAGG 58.910 33.333 0.00 0.00 0.00 3.11
1746 1776 7.544804 AGATGCTCAAAAATAAGGAAAAGGT 57.455 32.000 0.00 0.00 0.00 3.50
1747 1777 7.381323 AGATGCTCAAAAATAAGGAAAAGGTG 58.619 34.615 0.00 0.00 0.00 4.00
1748 1778 6.478512 TGCTCAAAAATAAGGAAAAGGTGT 57.521 33.333 0.00 0.00 0.00 4.16
1749 1779 6.279882 TGCTCAAAAATAAGGAAAAGGTGTG 58.720 36.000 0.00 0.00 0.00 3.82
1750 1780 5.696270 GCTCAAAAATAAGGAAAAGGTGTGG 59.304 40.000 0.00 0.00 0.00 4.17
1751 1781 5.606505 TCAAAAATAAGGAAAAGGTGTGGC 58.393 37.500 0.00 0.00 0.00 5.01
1752 1782 5.365314 TCAAAAATAAGGAAAAGGTGTGGCT 59.635 36.000 0.00 0.00 0.00 4.75
1753 1783 6.551601 TCAAAAATAAGGAAAAGGTGTGGCTA 59.448 34.615 0.00 0.00 0.00 3.93
1754 1784 5.977489 AAATAAGGAAAAGGTGTGGCTAC 57.023 39.130 0.00 0.00 0.00 3.58
1755 1785 1.892209 AAGGAAAAGGTGTGGCTACG 58.108 50.000 0.00 0.00 0.00 3.51
1756 1786 0.605589 AGGAAAAGGTGTGGCTACGC 60.606 55.000 5.00 5.00 36.58 4.42
1768 1798 4.845580 CTACGCCCAGCTGCCCAG 62.846 72.222 8.66 1.54 0.00 4.45
1774 1804 4.115199 CCAGCTGCCCAGGGGTAC 62.115 72.222 8.66 0.00 37.65 3.34
1775 1805 3.011517 CAGCTGCCCAGGGGTACT 61.012 66.667 7.91 0.18 37.65 2.73
1776 1806 2.689034 AGCTGCCCAGGGGTACTC 60.689 66.667 7.91 0.00 37.65 2.59
1777 1807 4.162690 GCTGCCCAGGGGTACTCG 62.163 72.222 7.91 0.00 37.65 4.18
1850 1881 2.174639 TCTAAGGGCCCATGTGGTTATG 59.825 50.000 27.56 6.90 36.04 1.90
1891 1922 0.401356 GTTTAGTCCCACCCCGGAAA 59.599 55.000 0.73 0.00 36.56 3.13
1963 1994 2.831526 GGAGCTTGAGAAGAGAAGAGGT 59.168 50.000 0.00 0.00 0.00 3.85
2088 2134 5.334569 GCTTATTTTTGCCAGTCACTAACGA 60.335 40.000 0.00 0.00 0.00 3.85
2177 2223 2.418910 CGAGCCCACGTCTCTCCAT 61.419 63.158 1.80 0.00 0.00 3.41
2210 2256 4.278669 CCTATATAAGTGTGCGGTGTCTCT 59.721 45.833 0.00 0.00 0.00 3.10
2263 2322 1.227734 CCCACCGTCGTTCCTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
2374 2433 2.070650 GGGGTGAGGGGCGAATAGT 61.071 63.158 0.00 0.00 0.00 2.12
2396 2455 0.453793 TTTGGGCAACGATTATGCGG 59.546 50.000 0.00 0.00 44.75 5.69
2397 2456 0.678366 TTGGGCAACGATTATGCGGT 60.678 50.000 0.00 0.00 44.75 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.255710 ACGACATGAATCTCTCGATCTTT 57.744 39.130 0.00 0.00 0.00 2.52
1 2 4.909696 ACGACATGAATCTCTCGATCTT 57.090 40.909 0.00 0.00 0.00 2.40
2 3 4.605968 CAACGACATGAATCTCTCGATCT 58.394 43.478 0.00 0.00 0.00 2.75
3 4 3.181377 GCAACGACATGAATCTCTCGATC 59.819 47.826 0.00 0.00 0.00 3.69
4 5 3.119291 GCAACGACATGAATCTCTCGAT 58.881 45.455 0.00 0.00 0.00 3.59
5 6 2.094752 TGCAACGACATGAATCTCTCGA 60.095 45.455 0.00 0.00 0.00 4.04
6 7 2.262211 TGCAACGACATGAATCTCTCG 58.738 47.619 0.00 0.00 0.00 4.04
7 8 3.061831 CACTGCAACGACATGAATCTCTC 59.938 47.826 0.00 0.00 0.00 3.20
8 9 2.998670 CACTGCAACGACATGAATCTCT 59.001 45.455 0.00 0.00 0.00 3.10
9 10 2.475187 GCACTGCAACGACATGAATCTC 60.475 50.000 0.00 0.00 0.00 2.75
10 11 1.466167 GCACTGCAACGACATGAATCT 59.534 47.619 0.00 0.00 0.00 2.40
11 12 1.197492 TGCACTGCAACGACATGAATC 59.803 47.619 0.00 0.00 34.76 2.52
12 13 1.069022 GTGCACTGCAACGACATGAAT 60.069 47.619 10.32 0.00 41.47 2.57
13 14 0.307453 GTGCACTGCAACGACATGAA 59.693 50.000 10.32 0.00 41.47 2.57
14 15 0.813210 TGTGCACTGCAACGACATGA 60.813 50.000 19.41 0.00 41.47 3.07
15 16 0.385098 CTGTGCACTGCAACGACATG 60.385 55.000 19.41 0.00 41.47 3.21
16 17 0.815213 ACTGTGCACTGCAACGACAT 60.815 50.000 22.15 0.00 41.47 3.06
17 18 1.449423 ACTGTGCACTGCAACGACA 60.449 52.632 22.15 0.00 41.47 4.35
18 19 1.010797 CACTGTGCACTGCAACGAC 60.011 57.895 22.15 0.00 41.47 4.34
19 20 2.822758 GCACTGTGCACTGCAACGA 61.823 57.895 26.70 0.00 44.26 3.85
20 21 2.352686 GCACTGTGCACTGCAACG 60.353 61.111 26.70 11.14 44.26 4.10
21 22 2.352686 CGCACTGTGCACTGCAAC 60.353 61.111 29.86 14.09 45.36 4.17
22 23 2.513435 TCGCACTGTGCACTGCAA 60.513 55.556 29.86 9.45 45.36 4.08
23 24 2.968697 CTCGCACTGTGCACTGCA 60.969 61.111 29.86 14.29 45.36 4.41
24 25 3.720193 CCTCGCACTGTGCACTGC 61.720 66.667 29.86 20.21 45.36 4.40
25 26 3.720193 GCCTCGCACTGTGCACTG 61.720 66.667 29.86 20.83 45.36 3.66
26 27 3.933722 AGCCTCGCACTGTGCACT 61.934 61.111 29.86 18.49 45.36 4.40
27 28 3.720193 CAGCCTCGCACTGTGCAC 61.720 66.667 29.86 10.75 45.36 4.57
38 39 3.130160 CTTCCAAGCGGCAGCCTC 61.130 66.667 10.54 0.05 46.67 4.70
113 114 1.153549 CTAGTTGGACGGCCTCAGC 60.154 63.158 9.82 0.00 38.76 4.26
114 115 1.153549 GCTAGTTGGACGGCCTCAG 60.154 63.158 9.82 0.65 34.31 3.35
115 116 2.978824 GCTAGTTGGACGGCCTCA 59.021 61.111 9.82 0.00 34.31 3.86
116 117 2.202756 CGCTAGTTGGACGGCCTC 60.203 66.667 9.82 0.96 34.31 4.70
117 118 2.678934 TCGCTAGTTGGACGGCCT 60.679 61.111 9.82 0.00 34.31 5.19
118 119 2.202756 CTCGCTAGTTGGACGGCC 60.203 66.667 0.00 0.00 0.00 6.13
119 120 2.886124 GCTCGCTAGTTGGACGGC 60.886 66.667 0.00 0.00 0.00 5.68
120 121 2.337749 ATCGCTCGCTAGTTGGACGG 62.338 60.000 0.00 0.00 0.00 4.79
121 122 1.064296 ATCGCTCGCTAGTTGGACG 59.936 57.895 0.00 0.00 0.00 4.79
122 123 1.483424 GCATCGCTCGCTAGTTGGAC 61.483 60.000 0.00 0.00 0.00 4.02
123 124 1.226974 GCATCGCTCGCTAGTTGGA 60.227 57.895 0.00 0.00 0.00 3.53
124 125 2.240500 GGCATCGCTCGCTAGTTGG 61.241 63.158 0.00 0.00 0.00 3.77
125 126 2.580470 CGGCATCGCTCGCTAGTTG 61.580 63.158 0.00 0.00 0.00 3.16
126 127 1.721664 TACGGCATCGCTCGCTAGTT 61.722 55.000 0.00 0.00 40.63 2.24
127 128 2.119147 CTACGGCATCGCTCGCTAGT 62.119 60.000 0.00 0.00 40.63 2.57
128 129 1.441182 CTACGGCATCGCTCGCTAG 60.441 63.158 0.00 0.00 40.63 3.42
129 130 2.637589 CTACGGCATCGCTCGCTA 59.362 61.111 0.00 0.00 40.63 4.26
130 131 4.933064 GCTACGGCATCGCTCGCT 62.933 66.667 0.00 0.00 40.63 4.93
160 161 3.374402 AGAGCGACTCCACCGGTG 61.374 66.667 28.26 28.26 37.90 4.94
161 162 3.374402 CAGAGCGACTCCACCGGT 61.374 66.667 0.00 0.00 40.66 5.28
162 163 4.803426 GCAGAGCGACTCCACCGG 62.803 72.222 0.00 0.00 0.00 5.28
163 164 4.803426 GGCAGAGCGACTCCACCG 62.803 72.222 3.66 0.00 0.00 4.94
164 165 4.803426 CGGCAGAGCGACTCCACC 62.803 72.222 3.66 4.97 0.00 4.61
165 166 4.803426 CCGGCAGAGCGACTCCAC 62.803 72.222 0.00 0.00 0.00 4.02
168 169 4.200283 CTCCCGGCAGAGCGACTC 62.200 72.222 0.00 0.00 0.00 3.36
179 180 3.770040 TCATCACCACGCTCCCGG 61.770 66.667 0.00 0.00 39.22 5.73
180 181 2.509336 GTCATCACCACGCTCCCG 60.509 66.667 0.00 0.00 41.14 5.14
181 182 1.940883 TACGTCATCACCACGCTCCC 61.941 60.000 0.00 0.00 41.10 4.30
182 183 0.102481 ATACGTCATCACCACGCTCC 59.898 55.000 0.00 0.00 41.10 4.70
183 184 1.588404 CAATACGTCATCACCACGCTC 59.412 52.381 0.00 0.00 41.10 5.03
184 185 1.203758 TCAATACGTCATCACCACGCT 59.796 47.619 0.00 0.00 41.10 5.07
185 186 1.588404 CTCAATACGTCATCACCACGC 59.412 52.381 0.00 0.00 41.10 5.34
186 187 2.193447 CCTCAATACGTCATCACCACG 58.807 52.381 0.00 0.00 43.13 4.94
187 188 2.550978 CCCTCAATACGTCATCACCAC 58.449 52.381 0.00 0.00 0.00 4.16
188 189 1.134521 GCCCTCAATACGTCATCACCA 60.135 52.381 0.00 0.00 0.00 4.17
189 190 1.583054 GCCCTCAATACGTCATCACC 58.417 55.000 0.00 0.00 0.00 4.02
190 191 1.139058 AGGCCCTCAATACGTCATCAC 59.861 52.381 0.00 0.00 0.00 3.06
191 192 1.412710 GAGGCCCTCAATACGTCATCA 59.587 52.381 5.69 0.00 0.00 3.07
192 193 1.689273 AGAGGCCCTCAATACGTCATC 59.311 52.381 14.46 0.00 32.06 2.92
193 194 1.794714 AGAGGCCCTCAATACGTCAT 58.205 50.000 14.46 0.00 32.06 3.06
194 195 1.568504 AAGAGGCCCTCAATACGTCA 58.431 50.000 14.46 0.00 32.06 4.35
195 196 2.093658 TCAAAGAGGCCCTCAATACGTC 60.094 50.000 14.46 0.00 32.06 4.34
196 197 1.906574 TCAAAGAGGCCCTCAATACGT 59.093 47.619 14.46 0.00 32.06 3.57
197 198 2.691409 TCAAAGAGGCCCTCAATACG 57.309 50.000 14.46 0.00 32.06 3.06
198 199 4.336713 GTGAATCAAAGAGGCCCTCAATAC 59.663 45.833 14.46 0.00 32.06 1.89
199 200 4.018506 TGTGAATCAAAGAGGCCCTCAATA 60.019 41.667 14.46 0.00 32.06 1.90
200 201 3.245371 TGTGAATCAAAGAGGCCCTCAAT 60.245 43.478 14.46 0.00 32.06 2.57
201 202 2.108075 TGTGAATCAAAGAGGCCCTCAA 59.892 45.455 14.46 0.00 32.06 3.02
202 203 1.704628 TGTGAATCAAAGAGGCCCTCA 59.295 47.619 14.46 0.00 32.06 3.86
203 204 2.496899 TGTGAATCAAAGAGGCCCTC 57.503 50.000 1.26 1.26 0.00 4.30
204 205 2.376518 TCTTGTGAATCAAAGAGGCCCT 59.623 45.455 0.00 0.00 35.48 5.19
205 206 2.795329 TCTTGTGAATCAAAGAGGCCC 58.205 47.619 0.00 0.00 35.48 5.80
206 207 5.397142 AAATCTTGTGAATCAAAGAGGCC 57.603 39.130 0.00 0.00 35.48 5.19
207 208 6.449698 TCAAAATCTTGTGAATCAAAGAGGC 58.550 36.000 11.40 0.00 35.48 4.70
208 209 8.876275 TTTCAAAATCTTGTGAATCAAAGAGG 57.124 30.769 11.40 4.63 33.90 3.69
211 212 9.377383 GCATTTTCAAAATCTTGTGAATCAAAG 57.623 29.630 0.00 0.00 33.90 2.77
212 213 8.890718 TGCATTTTCAAAATCTTGTGAATCAAA 58.109 25.926 0.00 0.00 33.90 2.69
213 214 8.434733 TGCATTTTCAAAATCTTGTGAATCAA 57.565 26.923 0.00 0.00 33.90 2.57
214 215 7.171848 CCTGCATTTTCAAAATCTTGTGAATCA 59.828 33.333 0.00 0.00 33.90 2.57
215 216 7.385752 TCCTGCATTTTCAAAATCTTGTGAATC 59.614 33.333 0.00 0.00 33.90 2.52
216 217 7.218614 TCCTGCATTTTCAAAATCTTGTGAAT 58.781 30.769 0.00 0.00 33.90 2.57
217 218 6.580788 TCCTGCATTTTCAAAATCTTGTGAA 58.419 32.000 0.00 0.00 33.94 3.18
218 219 6.159299 TCCTGCATTTTCAAAATCTTGTGA 57.841 33.333 0.00 0.00 33.94 3.58
219 220 6.847956 TTCCTGCATTTTCAAAATCTTGTG 57.152 33.333 0.00 0.00 33.94 3.33
220 221 7.820872 CCTATTCCTGCATTTTCAAAATCTTGT 59.179 33.333 0.00 0.00 33.94 3.16
221 222 8.036575 TCCTATTCCTGCATTTTCAAAATCTTG 58.963 33.333 0.00 0.00 0.00 3.02
222 223 8.137745 TCCTATTCCTGCATTTTCAAAATCTT 57.862 30.769 0.00 0.00 0.00 2.40
223 224 7.722949 TCCTATTCCTGCATTTTCAAAATCT 57.277 32.000 0.00 0.00 0.00 2.40
224 225 8.776376 TTTCCTATTCCTGCATTTTCAAAATC 57.224 30.769 0.00 0.00 0.00 2.17
225 226 9.223099 CTTTTCCTATTCCTGCATTTTCAAAAT 57.777 29.630 0.00 0.00 0.00 1.82
226 227 8.210265 ACTTTTCCTATTCCTGCATTTTCAAAA 58.790 29.630 0.00 0.00 0.00 2.44
227 228 7.734942 ACTTTTCCTATTCCTGCATTTTCAAA 58.265 30.769 0.00 0.00 0.00 2.69
228 229 7.301868 ACTTTTCCTATTCCTGCATTTTCAA 57.698 32.000 0.00 0.00 0.00 2.69
229 230 6.916360 ACTTTTCCTATTCCTGCATTTTCA 57.084 33.333 0.00 0.00 0.00 2.69
231 232 9.136323 CCTATACTTTTCCTATTCCTGCATTTT 57.864 33.333 0.00 0.00 0.00 1.82
232 233 8.502738 TCCTATACTTTTCCTATTCCTGCATTT 58.497 33.333 0.00 0.00 0.00 2.32
233 234 8.045720 TCCTATACTTTTCCTATTCCTGCATT 57.954 34.615 0.00 0.00 0.00 3.56
234 235 7.633018 TCCTATACTTTTCCTATTCCTGCAT 57.367 36.000 0.00 0.00 0.00 3.96
235 236 7.633018 ATCCTATACTTTTCCTATTCCTGCA 57.367 36.000 0.00 0.00 0.00 4.41
236 237 7.391833 CCAATCCTATACTTTTCCTATTCCTGC 59.608 40.741 0.00 0.00 0.00 4.85
237 238 8.660435 TCCAATCCTATACTTTTCCTATTCCTG 58.340 37.037 0.00 0.00 0.00 3.86
238 239 8.814448 TCCAATCCTATACTTTTCCTATTCCT 57.186 34.615 0.00 0.00 0.00 3.36
239 240 8.661345 ACTCCAATCCTATACTTTTCCTATTCC 58.339 37.037 0.00 0.00 0.00 3.01
240 241 9.495572 CACTCCAATCCTATACTTTTCCTATTC 57.504 37.037 0.00 0.00 0.00 1.75
241 242 9.004231 ACACTCCAATCCTATACTTTTCCTATT 57.996 33.333 0.00 0.00 0.00 1.73
242 243 8.568617 ACACTCCAATCCTATACTTTTCCTAT 57.431 34.615 0.00 0.00 0.00 2.57
243 244 7.622081 TGACACTCCAATCCTATACTTTTCCTA 59.378 37.037 0.00 0.00 0.00 2.94
244 245 6.443849 TGACACTCCAATCCTATACTTTTCCT 59.556 38.462 0.00 0.00 0.00 3.36
245 246 6.650120 TGACACTCCAATCCTATACTTTTCC 58.350 40.000 0.00 0.00 0.00 3.13
246 247 7.254932 GCATGACACTCCAATCCTATACTTTTC 60.255 40.741 0.00 0.00 0.00 2.29
247 248 6.543831 GCATGACACTCCAATCCTATACTTTT 59.456 38.462 0.00 0.00 0.00 2.27
248 249 6.058183 GCATGACACTCCAATCCTATACTTT 58.942 40.000 0.00 0.00 0.00 2.66
249 250 5.455326 GGCATGACACTCCAATCCTATACTT 60.455 44.000 0.00 0.00 0.00 2.24
250 251 4.040952 GGCATGACACTCCAATCCTATACT 59.959 45.833 0.00 0.00 0.00 2.12
251 252 4.319177 GGCATGACACTCCAATCCTATAC 58.681 47.826 0.00 0.00 0.00 1.47
252 253 3.327757 GGGCATGACACTCCAATCCTATA 59.672 47.826 0.00 0.00 0.00 1.31
253 254 2.107204 GGGCATGACACTCCAATCCTAT 59.893 50.000 0.00 0.00 0.00 2.57
254 255 1.490490 GGGCATGACACTCCAATCCTA 59.510 52.381 0.00 0.00 0.00 2.94
255 256 0.257039 GGGCATGACACTCCAATCCT 59.743 55.000 0.00 0.00 0.00 3.24
256 257 0.034186 TGGGCATGACACTCCAATCC 60.034 55.000 0.00 0.00 0.00 3.01
257 258 1.098050 GTGGGCATGACACTCCAATC 58.902 55.000 0.00 0.00 35.98 2.67
258 259 0.700564 AGTGGGCATGACACTCCAAT 59.299 50.000 15.28 3.01 45.50 3.16
259 260 2.154139 AGTGGGCATGACACTCCAA 58.846 52.632 15.28 0.00 45.50 3.53
260 261 3.905454 AGTGGGCATGACACTCCA 58.095 55.556 15.28 3.54 45.50 3.86
264 265 1.474077 GGATTCAAGTGGGCATGACAC 59.526 52.381 0.00 6.89 39.10 3.67
265 266 1.355381 AGGATTCAAGTGGGCATGACA 59.645 47.619 0.00 0.00 0.00 3.58
266 267 2.134789 AGGATTCAAGTGGGCATGAC 57.865 50.000 0.00 0.00 0.00 3.06
267 268 4.042062 CCTATAGGATTCAAGTGGGCATGA 59.958 45.833 14.11 0.00 37.39 3.07
268 269 4.042062 TCCTATAGGATTCAAGTGGGCATG 59.958 45.833 18.00 0.00 39.78 4.06
269 270 4.242811 TCCTATAGGATTCAAGTGGGCAT 58.757 43.478 18.00 0.00 39.78 4.40
270 271 3.664320 TCCTATAGGATTCAAGTGGGCA 58.336 45.455 18.00 0.00 39.78 5.36
282 283 9.042450 TCAAACACTCTTGTTAATCCTATAGGA 57.958 33.333 23.76 23.76 45.69 2.94
283 284 9.838339 ATCAAACACTCTTGTTAATCCTATAGG 57.162 33.333 13.07 13.07 45.69 2.57
287 288 9.567776 TGAAATCAAACACTCTTGTTAATCCTA 57.432 29.630 0.00 0.00 45.69 2.94
288 289 8.352942 GTGAAATCAAACACTCTTGTTAATCCT 58.647 33.333 0.00 0.00 45.69 3.24
289 290 7.323656 CGTGAAATCAAACACTCTTGTTAATCC 59.676 37.037 0.00 0.00 45.69 3.01
290 291 7.323656 CCGTGAAATCAAACACTCTTGTTAATC 59.676 37.037 0.00 0.00 45.69 1.75
291 292 7.138736 CCGTGAAATCAAACACTCTTGTTAAT 58.861 34.615 0.00 0.00 45.69 1.40
292 293 6.459024 CCCGTGAAATCAAACACTCTTGTTAA 60.459 38.462 0.00 0.00 45.69 2.01
293 294 5.008217 CCCGTGAAATCAAACACTCTTGTTA 59.992 40.000 0.00 0.00 45.69 2.41
294 295 9.186335 TTTCCCGTGAAATCAAACACTCTTGTT 62.186 37.037 0.00 0.00 40.38 2.83
295 296 3.315191 CCCGTGAAATCAAACACTCTTGT 59.685 43.478 0.00 0.00 37.67 3.16
296 297 3.563808 TCCCGTGAAATCAAACACTCTTG 59.436 43.478 0.00 0.00 35.23 3.02
297 298 3.815809 TCCCGTGAAATCAAACACTCTT 58.184 40.909 0.00 0.00 35.23 2.85
298 299 3.485463 TCCCGTGAAATCAAACACTCT 57.515 42.857 0.00 0.00 35.23 3.24
299 300 4.561735 TTTCCCGTGAAATCAAACACTC 57.438 40.909 0.00 0.00 35.58 3.51
300 301 4.736464 GCTTTTCCCGTGAAATCAAACACT 60.736 41.667 0.00 0.00 40.08 3.55
301 302 3.489416 GCTTTTCCCGTGAAATCAAACAC 59.511 43.478 0.00 0.00 40.08 3.32
302 303 3.131223 TGCTTTTCCCGTGAAATCAAACA 59.869 39.130 0.00 0.00 40.08 2.83
303 304 3.712187 TGCTTTTCCCGTGAAATCAAAC 58.288 40.909 0.00 0.00 40.08 2.93
304 305 4.392921 TTGCTTTTCCCGTGAAATCAAA 57.607 36.364 0.00 0.00 40.08 2.69
305 306 4.098654 TCTTTGCTTTTCCCGTGAAATCAA 59.901 37.500 0.00 0.00 40.08 2.57
306 307 3.634448 TCTTTGCTTTTCCCGTGAAATCA 59.366 39.130 0.00 0.00 40.08 2.57
307 308 4.237349 TCTTTGCTTTTCCCGTGAAATC 57.763 40.909 0.00 0.00 40.08 2.17
308 309 4.664150 TTCTTTGCTTTTCCCGTGAAAT 57.336 36.364 0.00 0.00 40.08 2.17
309 310 4.457834 TTTCTTTGCTTTTCCCGTGAAA 57.542 36.364 0.00 0.00 38.69 2.69
310 311 4.664150 ATTTCTTTGCTTTTCCCGTGAA 57.336 36.364 0.00 0.00 0.00 3.18
311 312 4.367450 CAATTTCTTTGCTTTTCCCGTGA 58.633 39.130 0.00 0.00 0.00 4.35
312 313 3.494251 CCAATTTCTTTGCTTTTCCCGTG 59.506 43.478 0.00 0.00 33.73 4.94
313 314 3.386402 TCCAATTTCTTTGCTTTTCCCGT 59.614 39.130 0.00 0.00 33.73 5.28
314 315 3.988819 TCCAATTTCTTTGCTTTTCCCG 58.011 40.909 0.00 0.00 33.73 5.14
315 316 6.691754 TTTTCCAATTTCTTTGCTTTTCCC 57.308 33.333 0.00 0.00 33.73 3.97
316 317 7.984391 TCTTTTTCCAATTTCTTTGCTTTTCC 58.016 30.769 0.00 0.00 33.73 3.13
317 318 8.124823 CCTCTTTTTCCAATTTCTTTGCTTTTC 58.875 33.333 0.00 0.00 33.73 2.29
318 319 7.611467 ACCTCTTTTTCCAATTTCTTTGCTTTT 59.389 29.630 0.00 0.00 33.73 2.27
319 320 7.112122 ACCTCTTTTTCCAATTTCTTTGCTTT 58.888 30.769 0.00 0.00 33.73 3.51
320 321 6.653020 ACCTCTTTTTCCAATTTCTTTGCTT 58.347 32.000 0.00 0.00 33.73 3.91
321 322 6.239217 ACCTCTTTTTCCAATTTCTTTGCT 57.761 33.333 0.00 0.00 33.73 3.91
322 323 6.538381 TCAACCTCTTTTTCCAATTTCTTTGC 59.462 34.615 0.00 0.00 33.73 3.68
323 324 8.491331 TTCAACCTCTTTTTCCAATTTCTTTG 57.509 30.769 0.00 0.00 34.93 2.77
324 325 8.321353 ACTTCAACCTCTTTTTCCAATTTCTTT 58.679 29.630 0.00 0.00 0.00 2.52
325 326 7.765819 CACTTCAACCTCTTTTTCCAATTTCTT 59.234 33.333 0.00 0.00 0.00 2.52
326 327 7.267857 CACTTCAACCTCTTTTTCCAATTTCT 58.732 34.615 0.00 0.00 0.00 2.52
327 328 6.479990 CCACTTCAACCTCTTTTTCCAATTTC 59.520 38.462 0.00 0.00 0.00 2.17
328 329 6.156083 TCCACTTCAACCTCTTTTTCCAATTT 59.844 34.615 0.00 0.00 0.00 1.82
329 330 5.660864 TCCACTTCAACCTCTTTTTCCAATT 59.339 36.000 0.00 0.00 0.00 2.32
330 331 5.208121 TCCACTTCAACCTCTTTTTCCAAT 58.792 37.500 0.00 0.00 0.00 3.16
331 332 4.605183 TCCACTTCAACCTCTTTTTCCAA 58.395 39.130 0.00 0.00 0.00 3.53
332 333 4.243793 TCCACTTCAACCTCTTTTTCCA 57.756 40.909 0.00 0.00 0.00 3.53
333 334 4.584743 ACATCCACTTCAACCTCTTTTTCC 59.415 41.667 0.00 0.00 0.00 3.13
334 335 5.774498 ACATCCACTTCAACCTCTTTTTC 57.226 39.130 0.00 0.00 0.00 2.29
335 336 7.060421 TCTAACATCCACTTCAACCTCTTTTT 58.940 34.615 0.00 0.00 0.00 1.94
336 337 6.601332 TCTAACATCCACTTCAACCTCTTTT 58.399 36.000 0.00 0.00 0.00 2.27
337 338 6.187727 TCTAACATCCACTTCAACCTCTTT 57.812 37.500 0.00 0.00 0.00 2.52
338 339 5.825593 TCTAACATCCACTTCAACCTCTT 57.174 39.130 0.00 0.00 0.00 2.85
339 340 6.380079 AATCTAACATCCACTTCAACCTCT 57.620 37.500 0.00 0.00 0.00 3.69
340 341 6.094186 GGAAATCTAACATCCACTTCAACCTC 59.906 42.308 0.00 0.00 33.30 3.85
341 342 5.946377 GGAAATCTAACATCCACTTCAACCT 59.054 40.000 0.00 0.00 33.30 3.50
342 343 5.946377 AGGAAATCTAACATCCACTTCAACC 59.054 40.000 0.00 0.00 35.62 3.77
343 344 8.616076 CATAGGAAATCTAACATCCACTTCAAC 58.384 37.037 0.00 0.00 35.62 3.18
344 345 8.548025 TCATAGGAAATCTAACATCCACTTCAA 58.452 33.333 0.00 0.00 35.62 2.69
345 346 8.089625 TCATAGGAAATCTAACATCCACTTCA 57.910 34.615 0.00 0.00 35.62 3.02
346 347 8.964476 TTCATAGGAAATCTAACATCCACTTC 57.036 34.615 0.00 0.00 35.62 3.01
367 368 9.449719 AACGGAATCTTTTGTACTAGATTTCAT 57.550 29.630 17.10 6.22 40.29 2.57
368 369 8.717821 CAACGGAATCTTTTGTACTAGATTTCA 58.282 33.333 17.10 0.00 40.29 2.69
369 370 8.175716 CCAACGGAATCTTTTGTACTAGATTTC 58.824 37.037 15.03 13.13 40.29 2.17
370 371 7.881232 TCCAACGGAATCTTTTGTACTAGATTT 59.119 33.333 15.03 3.16 40.29 2.17
371 372 7.391620 TCCAACGGAATCTTTTGTACTAGATT 58.608 34.615 14.26 14.26 42.27 2.40
372 373 6.942976 TCCAACGGAATCTTTTGTACTAGAT 58.057 36.000 0.00 0.00 32.62 1.98
373 374 6.349243 TCCAACGGAATCTTTTGTACTAGA 57.651 37.500 0.00 0.00 0.00 2.43
374 375 7.429636 TTTCCAACGGAATCTTTTGTACTAG 57.570 36.000 0.00 0.00 41.71 2.57
375 376 7.804843 TTTTCCAACGGAATCTTTTGTACTA 57.195 32.000 0.00 0.00 41.71 1.82
376 377 6.702716 TTTTCCAACGGAATCTTTTGTACT 57.297 33.333 0.00 0.00 41.71 2.73
377 378 7.940178 ATTTTTCCAACGGAATCTTTTGTAC 57.060 32.000 0.00 0.00 41.71 2.90
378 379 8.582433 GAATTTTTCCAACGGAATCTTTTGTA 57.418 30.769 0.00 0.00 41.71 2.41
379 380 7.477144 GAATTTTTCCAACGGAATCTTTTGT 57.523 32.000 0.00 0.00 41.71 2.83
393 394 8.293447 GGATTGAGTCCCATAGGAATTTTTCCA 61.293 40.741 8.87 0.00 46.38 3.53
394 395 6.040955 GGATTGAGTCCCATAGGAATTTTTCC 59.959 42.308 0.00 0.00 46.38 3.13
395 396 7.043961 GGATTGAGTCCCATAGGAATTTTTC 57.956 40.000 0.00 0.00 46.38 2.29
410 411 8.498054 TGTTCTTTGATTCATAGGATTGAGTC 57.502 34.615 4.57 0.00 34.09 3.36
411 412 8.868522 TTGTTCTTTGATTCATAGGATTGAGT 57.131 30.769 4.57 0.00 0.00 3.41
412 413 9.565213 GTTTGTTCTTTGATTCATAGGATTGAG 57.435 33.333 4.57 0.00 0.00 3.02
413 414 9.076781 TGTTTGTTCTTTGATTCATAGGATTGA 57.923 29.630 4.57 0.00 0.00 2.57
414 415 9.865321 ATGTTTGTTCTTTGATTCATAGGATTG 57.135 29.630 4.57 0.00 0.00 2.67
418 419 9.177608 TCCTATGTTTGTTCTTTGATTCATAGG 57.822 33.333 16.84 16.84 46.97 2.57
426 427 9.541143 GGAATTTTTCCTATGTTTGTTCTTTGA 57.459 29.630 0.00 0.00 46.57 2.69
443 444 8.437360 AGGATTGAAACACTTTGGAATTTTTC 57.563 30.769 0.00 0.00 0.00 2.29
444 445 7.498900 GGAGGATTGAAACACTTTGGAATTTTT 59.501 33.333 0.00 0.00 0.00 1.94
445 446 6.992123 GGAGGATTGAAACACTTTGGAATTTT 59.008 34.615 0.00 0.00 0.00 1.82
446 447 6.099557 TGGAGGATTGAAACACTTTGGAATTT 59.900 34.615 0.00 0.00 0.00 1.82
447 448 5.602145 TGGAGGATTGAAACACTTTGGAATT 59.398 36.000 0.00 0.00 0.00 2.17
448 449 5.147032 TGGAGGATTGAAACACTTTGGAAT 58.853 37.500 0.00 0.00 0.00 3.01
449 450 4.541705 TGGAGGATTGAAACACTTTGGAA 58.458 39.130 0.00 0.00 0.00 3.53
450 451 4.177537 TGGAGGATTGAAACACTTTGGA 57.822 40.909 0.00 0.00 0.00 3.53
451 452 4.935352 TTGGAGGATTGAAACACTTTGG 57.065 40.909 0.00 0.00 0.00 3.28
452 453 7.041848 GGATTTTTGGAGGATTGAAACACTTTG 60.042 37.037 0.00 0.00 0.00 2.77
453 454 6.992123 GGATTTTTGGAGGATTGAAACACTTT 59.008 34.615 0.00 0.00 0.00 2.66
454 455 6.327365 AGGATTTTTGGAGGATTGAAACACTT 59.673 34.615 0.00 0.00 0.00 3.16
455 456 5.840693 AGGATTTTTGGAGGATTGAAACACT 59.159 36.000 0.00 0.00 0.00 3.55
456 457 6.101650 AGGATTTTTGGAGGATTGAAACAC 57.898 37.500 0.00 0.00 0.00 3.32
457 458 9.189156 CTATAGGATTTTTGGAGGATTGAAACA 57.811 33.333 0.00 0.00 0.00 2.83
458 459 9.408648 TCTATAGGATTTTTGGAGGATTGAAAC 57.591 33.333 0.00 0.00 0.00 2.78
459 460 9.989296 TTCTATAGGATTTTTGGAGGATTGAAA 57.011 29.630 0.00 0.00 0.00 2.69
463 464 9.593565 GGAATTCTATAGGATTTTTGGAGGATT 57.406 33.333 7.72 0.00 0.00 3.01
464 465 8.964351 AGGAATTCTATAGGATTTTTGGAGGAT 58.036 33.333 7.72 0.00 0.00 3.24
465 466 8.350180 AGGAATTCTATAGGATTTTTGGAGGA 57.650 34.615 7.72 0.00 0.00 3.71
466 467 9.426534 AAAGGAATTCTATAGGATTTTTGGAGG 57.573 33.333 7.72 0.00 0.00 4.30
468 469 9.989296 TCAAAGGAATTCTATAGGATTTTTGGA 57.011 29.630 20.90 13.66 0.00 3.53
490 491 3.524095 TCAGGCCTCCTTTGATTCAAA 57.476 42.857 0.00 11.19 0.00 2.69
491 492 3.524095 TTCAGGCCTCCTTTGATTCAA 57.476 42.857 0.00 0.00 0.00 2.69
492 493 3.524095 TTTCAGGCCTCCTTTGATTCA 57.476 42.857 0.00 0.00 0.00 2.57
493 494 5.440610 TCTATTTCAGGCCTCCTTTGATTC 58.559 41.667 0.00 0.00 0.00 2.52
494 495 5.456921 TCTATTTCAGGCCTCCTTTGATT 57.543 39.130 0.00 0.00 0.00 2.57
495 496 5.196695 GTTCTATTTCAGGCCTCCTTTGAT 58.803 41.667 0.00 0.00 0.00 2.57
496 497 4.589908 GTTCTATTTCAGGCCTCCTTTGA 58.410 43.478 0.00 0.00 0.00 2.69
497 498 3.375299 CGTTCTATTTCAGGCCTCCTTTG 59.625 47.826 0.00 0.00 0.00 2.77
498 499 3.263425 TCGTTCTATTTCAGGCCTCCTTT 59.737 43.478 0.00 0.00 0.00 3.11
499 500 2.838202 TCGTTCTATTTCAGGCCTCCTT 59.162 45.455 0.00 0.00 0.00 3.36
500 501 2.432510 CTCGTTCTATTTCAGGCCTCCT 59.567 50.000 0.00 0.00 0.00 3.69
501 502 2.431057 TCTCGTTCTATTTCAGGCCTCC 59.569 50.000 0.00 0.00 0.00 4.30
502 503 3.449632 GTCTCGTTCTATTTCAGGCCTC 58.550 50.000 0.00 0.00 0.00 4.70
503 504 2.159226 CGTCTCGTTCTATTTCAGGCCT 60.159 50.000 0.00 0.00 0.00 5.19
504 505 2.194271 CGTCTCGTTCTATTTCAGGCC 58.806 52.381 0.00 0.00 0.00 5.19
505 506 2.877335 ACGTCTCGTTCTATTTCAGGC 58.123 47.619 0.00 0.00 36.35 4.85
506 507 6.415280 CAGATTACGTCTCGTTCTATTTCAGG 59.585 42.308 0.00 0.00 41.54 3.86
507 508 7.187480 TCAGATTACGTCTCGTTCTATTTCAG 58.813 38.462 0.00 0.00 41.54 3.02
508 509 7.080353 TCAGATTACGTCTCGTTCTATTTCA 57.920 36.000 0.00 0.00 41.54 2.69
509 510 9.320406 CTATCAGATTACGTCTCGTTCTATTTC 57.680 37.037 0.00 0.00 41.54 2.17
510 511 8.838365 ACTATCAGATTACGTCTCGTTCTATTT 58.162 33.333 0.00 0.00 41.54 1.40
511 512 8.380743 ACTATCAGATTACGTCTCGTTCTATT 57.619 34.615 0.00 0.00 41.54 1.73
512 513 7.966246 ACTATCAGATTACGTCTCGTTCTAT 57.034 36.000 0.00 0.00 41.54 1.98
513 514 8.877808 TTACTATCAGATTACGTCTCGTTCTA 57.122 34.615 0.00 0.00 41.54 2.10
514 515 7.783090 TTACTATCAGATTACGTCTCGTTCT 57.217 36.000 0.00 0.00 41.54 3.01
515 516 8.281194 TCATTACTATCAGATTACGTCTCGTTC 58.719 37.037 0.00 0.00 41.54 3.95
516 517 8.151141 TCATTACTATCAGATTACGTCTCGTT 57.849 34.615 0.00 0.00 41.54 3.85
517 518 7.725818 TCATTACTATCAGATTACGTCTCGT 57.274 36.000 0.00 0.00 44.35 4.18
518 519 9.447040 TTTTCATTACTATCAGATTACGTCTCG 57.553 33.333 0.00 0.00 34.00 4.04
539 540 9.844790 GTCATCATCAATAGACACAATTTTTCA 57.155 29.630 0.00 0.00 0.00 2.69
540 541 9.844790 TGTCATCATCAATAGACACAATTTTTC 57.155 29.630 0.00 0.00 36.20 2.29
542 543 9.850628 CTTGTCATCATCAATAGACACAATTTT 57.149 29.630 0.00 0.00 40.37 1.82
543 544 9.017509 ACTTGTCATCATCAATAGACACAATTT 57.982 29.630 0.00 0.00 40.37 1.82
544 545 8.571461 ACTTGTCATCATCAATAGACACAATT 57.429 30.769 0.00 0.00 40.37 2.32
545 546 8.571461 AACTTGTCATCATCAATAGACACAAT 57.429 30.769 0.00 0.00 40.37 2.71
546 547 7.984422 AACTTGTCATCATCAATAGACACAA 57.016 32.000 0.00 0.00 40.37 3.33
547 548 8.093927 TGTAACTTGTCATCATCAATAGACACA 58.906 33.333 0.00 0.00 40.37 3.72
548 549 8.479313 TGTAACTTGTCATCATCAATAGACAC 57.521 34.615 0.00 0.00 40.37 3.67
562 563 8.145767 CGGGGACTATAAATATGTAACTTGTCA 58.854 37.037 0.00 0.00 0.00 3.58
563 564 8.362639 TCGGGGACTATAAATATGTAACTTGTC 58.637 37.037 0.00 0.00 0.00 3.18
564 565 8.253867 TCGGGGACTATAAATATGTAACTTGT 57.746 34.615 0.00 0.00 0.00 3.16
565 566 9.204570 CTTCGGGGACTATAAATATGTAACTTG 57.795 37.037 0.00 0.00 0.00 3.16
566 567 9.151177 TCTTCGGGGACTATAAATATGTAACTT 57.849 33.333 0.00 0.00 0.00 2.66
567 568 8.716674 TCTTCGGGGACTATAAATATGTAACT 57.283 34.615 0.00 0.00 0.00 2.24
568 569 8.033626 CCTCTTCGGGGACTATAAATATGTAAC 58.966 40.741 0.00 0.00 0.00 2.50
569 570 7.731688 ACCTCTTCGGGGACTATAAATATGTAA 59.268 37.037 0.00 0.00 36.97 2.41
570 571 7.177921 CACCTCTTCGGGGACTATAAATATGTA 59.822 40.741 0.00 0.00 39.13 2.29
571 572 6.014499 CACCTCTTCGGGGACTATAAATATGT 60.014 42.308 0.00 0.00 39.13 2.29
572 573 6.398918 CACCTCTTCGGGGACTATAAATATG 58.601 44.000 0.00 0.00 39.13 1.78
573 574 5.046520 GCACCTCTTCGGGGACTATAAATAT 60.047 44.000 0.00 0.00 39.13 1.28
574 575 4.282703 GCACCTCTTCGGGGACTATAAATA 59.717 45.833 0.00 0.00 39.13 1.40
575 576 3.071167 GCACCTCTTCGGGGACTATAAAT 59.929 47.826 0.00 0.00 39.13 1.40
576 577 2.433239 GCACCTCTTCGGGGACTATAAA 59.567 50.000 0.00 0.00 39.13 1.40
577 578 2.037144 GCACCTCTTCGGGGACTATAA 58.963 52.381 0.00 0.00 39.13 0.98
578 579 1.063492 TGCACCTCTTCGGGGACTATA 60.063 52.381 0.00 0.00 39.13 1.31
579 580 0.325296 TGCACCTCTTCGGGGACTAT 60.325 55.000 0.00 0.00 39.13 2.12
580 581 0.325296 ATGCACCTCTTCGGGGACTA 60.325 55.000 0.00 0.00 39.13 2.59
581 582 1.613630 ATGCACCTCTTCGGGGACT 60.614 57.895 0.00 0.00 39.13 3.85
582 583 1.153349 GATGCACCTCTTCGGGGAC 60.153 63.158 0.00 0.00 39.13 4.46
583 584 2.367202 GGATGCACCTCTTCGGGGA 61.367 63.158 0.00 0.00 39.13 4.81
584 585 2.190578 GGATGCACCTCTTCGGGG 59.809 66.667 0.00 0.00 40.11 5.73
585 586 2.202932 CGGATGCACCTCTTCGGG 60.203 66.667 0.00 0.00 36.97 5.14
586 587 2.202932 CCGGATGCACCTCTTCGG 60.203 66.667 0.00 0.00 36.31 4.30
587 588 1.227089 CTCCGGATGCACCTCTTCG 60.227 63.158 3.57 0.00 36.31 3.79
588 589 1.144936 CCTCCGGATGCACCTCTTC 59.855 63.158 3.57 0.00 36.31 2.87
589 590 2.370445 CCCTCCGGATGCACCTCTT 61.370 63.158 3.57 0.00 36.31 2.85
590 591 2.765807 CCCTCCGGATGCACCTCT 60.766 66.667 3.57 0.00 36.31 3.69
591 592 2.764128 TCCCTCCGGATGCACCTC 60.764 66.667 3.57 0.00 36.31 3.85
592 593 3.083997 GTCCCTCCGGATGCACCT 61.084 66.667 3.57 0.00 41.40 4.00
593 594 3.399181 TGTCCCTCCGGATGCACC 61.399 66.667 3.57 0.00 41.40 5.01
594 595 1.327690 TAGTGTCCCTCCGGATGCAC 61.328 60.000 3.57 11.82 41.40 4.57
595 596 1.001120 TAGTGTCCCTCCGGATGCA 59.999 57.895 3.57 0.00 41.40 3.96
596 597 1.442148 GTAGTGTCCCTCCGGATGC 59.558 63.158 3.57 0.00 41.40 3.91
597 598 1.734137 CGTAGTGTCCCTCCGGATG 59.266 63.158 3.57 0.81 41.40 3.51
598 599 1.455217 CCGTAGTGTCCCTCCGGAT 60.455 63.158 3.57 0.00 41.40 4.18
599 600 2.044650 CCGTAGTGTCCCTCCGGA 60.045 66.667 2.93 2.93 41.08 5.14
600 601 0.680921 TAACCGTAGTGTCCCTCCGG 60.681 60.000 0.00 0.00 44.06 5.14
601 602 0.453390 GTAACCGTAGTGTCCCTCCG 59.547 60.000 0.00 0.00 0.00 4.63
602 603 1.549203 TGTAACCGTAGTGTCCCTCC 58.451 55.000 0.00 0.00 0.00 4.30
603 604 2.821969 TCTTGTAACCGTAGTGTCCCTC 59.178 50.000 0.00 0.00 0.00 4.30
604 605 2.824341 CTCTTGTAACCGTAGTGTCCCT 59.176 50.000 0.00 0.00 0.00 4.20
605 606 2.560105 ACTCTTGTAACCGTAGTGTCCC 59.440 50.000 0.00 0.00 0.00 4.46
606 607 3.930634 ACTCTTGTAACCGTAGTGTCC 57.069 47.619 0.00 0.00 0.00 4.02
607 608 3.427863 GCAACTCTTGTAACCGTAGTGTC 59.572 47.826 0.00 0.00 0.00 3.67
608 609 3.181473 TGCAACTCTTGTAACCGTAGTGT 60.181 43.478 0.00 0.00 0.00 3.55
609 610 3.386486 TGCAACTCTTGTAACCGTAGTG 58.614 45.455 0.00 0.00 0.00 2.74
610 611 3.738830 TGCAACTCTTGTAACCGTAGT 57.261 42.857 0.00 0.00 0.00 2.73
611 612 4.495422 AGATGCAACTCTTGTAACCGTAG 58.505 43.478 0.00 0.00 0.00 3.51
612 613 4.219944 AGAGATGCAACTCTTGTAACCGTA 59.780 41.667 19.90 0.00 43.62 4.02
613 614 3.006967 AGAGATGCAACTCTTGTAACCGT 59.993 43.478 19.90 0.00 43.62 4.83
614 615 3.589988 AGAGATGCAACTCTTGTAACCG 58.410 45.455 19.90 0.00 43.62 4.44
623 624 8.430801 AACTGTCATATAAAGAGATGCAACTC 57.569 34.615 15.71 15.71 37.19 3.01
624 625 8.671921 CAAACTGTCATATAAAGAGATGCAACT 58.328 33.333 0.00 0.00 0.00 3.16
625 626 7.912250 CCAAACTGTCATATAAAGAGATGCAAC 59.088 37.037 0.00 0.00 0.00 4.17
626 627 7.828717 TCCAAACTGTCATATAAAGAGATGCAA 59.171 33.333 0.00 0.00 0.00 4.08
627 628 7.337938 TCCAAACTGTCATATAAAGAGATGCA 58.662 34.615 0.00 0.00 0.00 3.96
628 629 7.792374 TCCAAACTGTCATATAAAGAGATGC 57.208 36.000 0.00 0.00 0.00 3.91
633 634 9.613428 CCACTTATCCAAACTGTCATATAAAGA 57.387 33.333 0.00 0.00 0.00 2.52
634 635 9.613428 TCCACTTATCCAAACTGTCATATAAAG 57.387 33.333 0.00 0.00 0.00 1.85
635 636 9.613428 CTCCACTTATCCAAACTGTCATATAAA 57.387 33.333 0.00 0.00 0.00 1.40
636 637 8.988060 TCTCCACTTATCCAAACTGTCATATAA 58.012 33.333 0.00 0.00 0.00 0.98
637 638 8.547481 TCTCCACTTATCCAAACTGTCATATA 57.453 34.615 0.00 0.00 0.00 0.86
638 639 7.437713 TCTCCACTTATCCAAACTGTCATAT 57.562 36.000 0.00 0.00 0.00 1.78
639 640 6.867519 TCTCCACTTATCCAAACTGTCATA 57.132 37.500 0.00 0.00 0.00 2.15
640 641 5.762179 TCTCCACTTATCCAAACTGTCAT 57.238 39.130 0.00 0.00 0.00 3.06
641 642 5.762179 ATCTCCACTTATCCAAACTGTCA 57.238 39.130 0.00 0.00 0.00 3.58
642 643 8.561738 TTAAATCTCCACTTATCCAAACTGTC 57.438 34.615 0.00 0.00 0.00 3.51
643 644 9.178758 GATTAAATCTCCACTTATCCAAACTGT 57.821 33.333 0.00 0.00 0.00 3.55
644 645 9.401058 AGATTAAATCTCCACTTATCCAAACTG 57.599 33.333 0.00 0.00 33.42 3.16
687 688 8.714179 CGTGTGGTGAATGTTAAGACTTAATTA 58.286 33.333 10.76 4.49 0.00 1.40
688 689 7.581476 CGTGTGGTGAATGTTAAGACTTAATT 58.419 34.615 10.76 2.58 0.00 1.40
689 690 6.348213 GCGTGTGGTGAATGTTAAGACTTAAT 60.348 38.462 10.76 0.00 0.00 1.40
690 691 5.049954 GCGTGTGGTGAATGTTAAGACTTAA 60.050 40.000 3.44 3.44 0.00 1.85
691 692 4.449743 GCGTGTGGTGAATGTTAAGACTTA 59.550 41.667 0.00 0.00 0.00 2.24
692 693 3.250040 GCGTGTGGTGAATGTTAAGACTT 59.750 43.478 0.00 0.00 0.00 3.01
693 694 2.806244 GCGTGTGGTGAATGTTAAGACT 59.194 45.455 0.00 0.00 0.00 3.24
694 695 2.095919 GGCGTGTGGTGAATGTTAAGAC 60.096 50.000 0.00 0.00 0.00 3.01
695 696 2.147958 GGCGTGTGGTGAATGTTAAGA 58.852 47.619 0.00 0.00 0.00 2.10
696 697 2.151202 AGGCGTGTGGTGAATGTTAAG 58.849 47.619 0.00 0.00 0.00 1.85
697 698 2.264005 AGGCGTGTGGTGAATGTTAA 57.736 45.000 0.00 0.00 0.00 2.01
698 699 3.527533 GATAGGCGTGTGGTGAATGTTA 58.472 45.455 0.00 0.00 0.00 2.41
699 700 2.356135 GATAGGCGTGTGGTGAATGTT 58.644 47.619 0.00 0.00 0.00 2.71
700 701 1.406887 GGATAGGCGTGTGGTGAATGT 60.407 52.381 0.00 0.00 0.00 2.71
701 702 1.299541 GGATAGGCGTGTGGTGAATG 58.700 55.000 0.00 0.00 0.00 2.67
702 703 0.908910 TGGATAGGCGTGTGGTGAAT 59.091 50.000 0.00 0.00 0.00 2.57
703 704 0.908910 ATGGATAGGCGTGTGGTGAA 59.091 50.000 0.00 0.00 0.00 3.18
706 707 1.412710 CAGTATGGATAGGCGTGTGGT 59.587 52.381 0.00 0.00 0.00 4.16
722 723 4.735132 GAGGCGCGTGTGGCAGTA 62.735 66.667 7.63 0.00 43.84 2.74
879 880 2.820787 GGACCGAATCTCGATGGAGTAT 59.179 50.000 4.53 0.00 43.74 2.12
887 888 3.884350 CGCCGGACCGAATCTCGA 61.884 66.667 17.49 0.00 43.74 4.04
909 910 2.693762 CGTACAGAGGCCGAACCGA 61.694 63.158 0.00 0.00 46.52 4.69
913 914 1.588082 GGAACGTACAGAGGCCGAA 59.412 57.895 0.00 0.00 0.00 4.30
996 997 3.118992 CGACATCCTGGAAGTTCATCTGA 60.119 47.826 5.98 0.00 0.00 3.27
1118 1120 2.438614 CCAGCTCGTCCTCCTCGA 60.439 66.667 0.00 0.00 35.96 4.04
1317 1323 3.452264 TGTCTTCCCAACGATCATCATCT 59.548 43.478 0.00 0.00 0.00 2.90
1348 1354 1.486211 CTGGTCTGGTCCGAGGTATT 58.514 55.000 0.00 0.00 0.00 1.89
1369 1375 3.008704 TCATCATCATCATCGCCATCCTT 59.991 43.478 0.00 0.00 0.00 3.36
1609 1639 1.135803 GCAGCCGCGTTAAAATTGAGA 60.136 47.619 4.92 0.00 0.00 3.27
1643 1673 4.652131 TGGTTTGATGCGGCCGGT 62.652 61.111 29.38 0.00 0.00 5.28
1652 1682 0.609131 CGCCCTTCACCTGGTTTGAT 60.609 55.000 0.00 0.00 0.00 2.57
1653 1683 1.228124 CGCCCTTCACCTGGTTTGA 60.228 57.895 0.00 0.00 0.00 2.69
1707 1737 2.094659 ATCTTCAACAGTCGCGCGG 61.095 57.895 31.69 16.94 0.00 6.46
1710 1740 0.368227 GAGCATCTTCAACAGTCGCG 59.632 55.000 0.00 0.00 0.00 5.87
1711 1741 1.432514 TGAGCATCTTCAACAGTCGC 58.567 50.000 0.00 0.00 34.92 5.19
1712 1742 4.472691 TTTTGAGCATCTTCAACAGTCG 57.527 40.909 0.00 0.00 36.84 4.18
1713 1743 7.540055 CCTTATTTTTGAGCATCTTCAACAGTC 59.460 37.037 0.00 0.00 36.84 3.51
1714 1744 7.231317 TCCTTATTTTTGAGCATCTTCAACAGT 59.769 33.333 0.00 0.00 36.84 3.55
1730 1760 5.887214 AGCCACACCTTTTCCTTATTTTT 57.113 34.783 0.00 0.00 0.00 1.94
1731 1761 5.048294 CGTAGCCACACCTTTTCCTTATTTT 60.048 40.000 0.00 0.00 0.00 1.82
1735 1765 3.048337 CGTAGCCACACCTTTTCCTTA 57.952 47.619 0.00 0.00 0.00 2.69
1737 1767 3.625745 CGTAGCCACACCTTTTCCT 57.374 52.632 0.00 0.00 0.00 3.36
1751 1781 4.845580 CTGGGCAGCTGGGCGTAG 62.846 72.222 17.12 6.97 44.56 3.51
1757 1787 4.115199 GTACCCCTGGGCAGCTGG 62.115 72.222 17.12 0.00 39.32 4.85
1758 1788 3.011517 AGTACCCCTGGGCAGCTG 61.012 66.667 10.11 10.11 39.32 4.24
1759 1789 2.689034 GAGTACCCCTGGGCAGCT 60.689 66.667 7.39 3.94 39.32 4.24
1760 1790 4.162690 CGAGTACCCCTGGGCAGC 62.163 72.222 7.39 0.00 39.32 5.25
1761 1791 2.683933 ACGAGTACCCCTGGGCAG 60.684 66.667 7.39 0.00 39.32 4.85
1762 1792 3.000819 CACGAGTACCCCTGGGCA 61.001 66.667 7.39 0.00 39.32 5.36
1763 1793 4.468689 GCACGAGTACCCCTGGGC 62.469 72.222 7.39 0.00 39.32 5.36
1764 1794 2.683933 AGCACGAGTACCCCTGGG 60.684 66.667 5.50 5.50 42.03 4.45
1765 1795 1.541310 TTCAGCACGAGTACCCCTGG 61.541 60.000 0.00 0.00 0.00 4.45
1766 1796 0.320374 TTTCAGCACGAGTACCCCTG 59.680 55.000 0.00 0.00 0.00 4.45
1767 1797 1.276622 ATTTCAGCACGAGTACCCCT 58.723 50.000 0.00 0.00 0.00 4.79
1768 1798 2.109425 AATTTCAGCACGAGTACCCC 57.891 50.000 0.00 0.00 0.00 4.95
1769 1799 3.071479 TCAAATTTCAGCACGAGTACCC 58.929 45.455 0.00 0.00 0.00 3.69
1770 1800 3.994392 TCTCAAATTTCAGCACGAGTACC 59.006 43.478 0.00 0.00 0.00 3.34
1771 1801 5.446473 CCATCTCAAATTTCAGCACGAGTAC 60.446 44.000 0.00 0.00 0.00 2.73
1772 1802 4.631377 CCATCTCAAATTTCAGCACGAGTA 59.369 41.667 0.00 0.00 0.00 2.59
1773 1803 3.438087 CCATCTCAAATTTCAGCACGAGT 59.562 43.478 0.00 0.00 0.00 4.18
1774 1804 3.181503 CCCATCTCAAATTTCAGCACGAG 60.182 47.826 0.00 0.00 0.00 4.18
1775 1805 2.749076 CCCATCTCAAATTTCAGCACGA 59.251 45.455 0.00 0.00 0.00 4.35
1776 1806 2.733227 GCCCATCTCAAATTTCAGCACG 60.733 50.000 0.00 0.00 0.00 5.34
1777 1807 2.494870 AGCCCATCTCAAATTTCAGCAC 59.505 45.455 0.00 0.00 0.00 4.40
1850 1881 1.263356 TCCACTACACCTAGTGCCAC 58.737 55.000 2.82 0.00 46.12 5.01
1869 1900 0.402887 CCGGGGTGGGACTAAACTTT 59.597 55.000 0.00 0.00 0.00 2.66
1891 1922 2.192263 GAGGTCCAACTCCTCTTCCAT 58.808 52.381 4.91 0.00 45.56 3.41
1919 1950 6.070251 TCCAATAGCATGTAGAAGAGAAACCA 60.070 38.462 0.00 0.00 0.00 3.67
1963 1994 4.742649 AGGAGGAGTGCGCGAGGA 62.743 66.667 12.10 0.00 0.00 3.71
2088 2134 1.622811 CCCAGCTGTCAGAGAACTCTT 59.377 52.381 13.81 0.00 37.98 2.85
2210 2256 1.543065 TTCGTGGCGGCTAGGGTTAA 61.543 55.000 11.43 0.00 0.00 2.01
2307 2366 2.043852 ACCTGCTCTCCCGTCGAT 60.044 61.111 0.00 0.00 0.00 3.59
2385 2444 2.297625 CGAGCAACCGCATAATCGT 58.702 52.632 0.00 0.00 42.27 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.