AutoCloner

Multiple sequence alignment - TraesCS1A01G077000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G077000	chr1A	100.000	3196	0	0	1	3196	59843337	59840142	0.000000e+00	5903.0
1	TraesCS1A01G077000	chr1A	77.143	140	32	0	1098	1237	34409784	34409645	7.350000e-12	82.4
2	TraesCS1A01G077000	chr1A	100.000	34	0	0	1099	1132	442606686	442606719	2.660000e-06	63.9
3	TraesCS1A01G077000	chr1D	95.868	1452	49	2	775	2218	61944424	61942976	0.000000e+00	2338.0
4	TraesCS1A01G077000	chr1D	94.044	638	35	2	138	775	361184601	361185235	0.000000e+00	965.0
5	TraesCS1A01G077000	chr1D	94.019	535	28	3	242	775	366692566	366693097	0.000000e+00	808.0
6	TraesCS1A01G077000	chr1D	74.824	997	214	24	2218	3188	112869440	112868455	1.770000e-112	416.0
7	TraesCS1A01G077000	chr1D	77.477	111	25	0	1098	1208	35654226	35654116	2.060000e-07	67.6
8	TraesCS1A01G077000	chr1D	100.000	34	0	0	1099	1132	342873077	342873110	2.660000e-06	63.9
9	TraesCS1A01G077000	chr1B	95.332	1371	49	8	860	2218	98447605	98446238	0.000000e+00	2163.0
10	TraesCS1A01G077000	chr1B	79.525	1011	170	19	2218	3196	302519287	302520292	0.000000e+00	686.0
11	TraesCS1A01G077000	chr1B	77.789	995	190	21	2217	3188	186518168	186517182	4.590000e-163	584.0
12	TraesCS1A01G077000	chr1B	76.931	997	198	17	2220	3196	48054532	48053548	3.630000e-149	538.0
13	TraesCS1A01G077000	chr1B	95.420	262	12	0	1	262	614568414	614568675	4.930000e-113	418.0
14	TraesCS1A01G077000	chr1B	77.143	140	32	0	1098	1237	54136163	54136024	7.350000e-12	82.4
15	TraesCS1A01G077000	chr1B	77.143	140	29	2	1098	1237	54960893	54960757	9.510000e-11	78.7
16	TraesCS1A01G077000	chr5D	90.839	775	45	12	1	775	184103626	184104374	0.000000e+00	1014.0
17	TraesCS1A01G077000	chr3D	84.438	996	132	13	2220	3196	132233900	132232909	0.000000e+00	959.0
18	TraesCS1A01G077000	chr3D	93.680	538	30	3	242	778	167377382	167377916	0.000000e+00	802.0
19	TraesCS1A01G077000	chrUn	89.354	789	39	8	1	774	22447704	22446946	0.000000e+00	950.0
20	TraesCS1A01G077000	chrUn	95.802	262	11	0	1	262	27172359	27172098	1.060000e-114	424.0
21	TraesCS1A01G077000	chrUn	95.420	262	12	0	1	262	27177824	27177563	4.930000e-113	418.0
22	TraesCS1A01G077000	chrUn	95.131	267	8	4	1	262	451808883	451809149	1.770000e-112	416.0
23	TraesCS1A01G077000	chrUn	95.038	262	13	0	1	262	83560813	83561074	2.290000e-111	412.0
24	TraesCS1A01G077000	chr2B	82.932	996	149	7	2219	3196	58235744	58234752	0.000000e+00	878.0
25	TraesCS1A01G077000	chr2B	100.000	29	0	0	1351	1379	76081288	76081316	2.000000e-03	54.7
26	TraesCS1A01G077000	chr6D	94.393	535	26	2	242	775	37715656	37716187	0.000000e+00	819.0
27	TraesCS1A01G077000	chr6D	94.019	535	27	4	242	775	413010220	413009690	0.000000e+00	806.0
28	TraesCS1A01G077000	chr7D	93.855	537	29	3	242	777	29598397	29598930	0.000000e+00	806.0
29	TraesCS1A01G077000	chr7D	93.820	534	29	3	242	774	130245220	130244690	0.000000e+00	800.0
30	TraesCS1A01G077000	chr7D	88.676	627	50	9	2218	2826	554467738	554467115	0.000000e+00	745.0
31	TraesCS1A01G077000	chr7D	94.700	283	15	0	2914	3196	554435135	554434853	1.050000e-119	440.0
32	TraesCS1A01G077000	chr7D	100.000	35	0	0	1098	1132	73115211	73115245	7.400000e-07	65.8
33	TraesCS1A01G077000	chr4B	78.354	984	180	25	2229	3188	660542105	660543079	9.800000e-170	606.0
34	TraesCS1A01G077000	chr3B	87.244	439	33	6	2215	2634	9366920	9367354	2.230000e-131	479.0
35	TraesCS1A01G077000	chr7A	89.694	359	33	4	1	356	460990131	460990488	3.760000e-124	455.0
36	TraesCS1A01G077000	chr3A	95.420	262	12	0	1	262	25920328	25920589	4.930000e-113	418.0
37	TraesCS1A01G077000	chr5A	95.131	267	8	4	1	262	74930586	74930320	1.770000e-112	416.0
38	TraesCS1A01G077000	chr7B	75.159	946	200	25	2218	3139	27272496	27271562	2.290000e-111	412.0
39	TraesCS1A01G077000	chr7B	75.497	151	28	7	1098	1245	15072531	15072387	7.400000e-07	65.8
40	TraesCS1A01G077000	chr7B	100.000	35	0	0	1098	1132	15301117	15301083	7.400000e-07	65.8
41	TraesCS1A01G077000	chr2D	72.406	877	209	23	2269	3120	450257496	450256628	6.850000e-62	248.0
42	TraesCS1A01G077000	chr6B	88.889	126	14	0	3063	3188	567321327	567321452	4.270000e-34	156.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G077000	chr1A	59840142	59843337	3195	True	5903	5903	100.000	1	3196	1	chr1A.!!$R2	3195
1	TraesCS1A01G077000	chr1D	61942976	61944424	1448	True	2338	2338	95.868	775	2218	1	chr1D.!!$R2	1443
2	TraesCS1A01G077000	chr1D	361184601	361185235	634	False	965	965	94.044	138	775	1	chr1D.!!$F2	637
3	TraesCS1A01G077000	chr1D	366692566	366693097	531	False	808	808	94.019	242	775	1	chr1D.!!$F3	533
4	TraesCS1A01G077000	chr1D	112868455	112869440	985	True	416	416	74.824	2218	3188	1	chr1D.!!$R3	970
5	TraesCS1A01G077000	chr1B	98446238	98447605	1367	True	2163	2163	95.332	860	2218	1	chr1B.!!$R4	1358
6	TraesCS1A01G077000	chr1B	302519287	302520292	1005	False	686	686	79.525	2218	3196	1	chr1B.!!$F1	978
7	TraesCS1A01G077000	chr1B	186517182	186518168	986	True	584	584	77.789	2217	3188	1	chr1B.!!$R5	971
8	TraesCS1A01G077000	chr1B	48053548	48054532	984	True	538	538	76.931	2220	3196	1	chr1B.!!$R1	976
9	TraesCS1A01G077000	chr5D	184103626	184104374	748	False	1014	1014	90.839	1	775	1	chr5D.!!$F1	774
10	TraesCS1A01G077000	chr3D	132232909	132233900	991	True	959	959	84.438	2220	3196	1	chr3D.!!$R1	976
11	TraesCS1A01G077000	chr3D	167377382	167377916	534	False	802	802	93.680	242	778	1	chr3D.!!$F1	536
12	TraesCS1A01G077000	chrUn	22446946	22447704	758	True	950	950	89.354	1	774	1	chrUn.!!$R1	773
13	TraesCS1A01G077000	chr2B	58234752	58235744	992	True	878	878	82.932	2219	3196	1	chr2B.!!$R1	977
14	TraesCS1A01G077000	chr6D	37715656	37716187	531	False	819	819	94.393	242	775	1	chr6D.!!$F1	533
15	TraesCS1A01G077000	chr6D	413009690	413010220	530	True	806	806	94.019	242	775	1	chr6D.!!$R1	533
16	TraesCS1A01G077000	chr7D	29598397	29598930	533	False	806	806	93.855	242	777	1	chr7D.!!$F1	535
17	TraesCS1A01G077000	chr7D	130244690	130245220	530	True	800	800	93.820	242	774	1	chr7D.!!$R1	532
18	TraesCS1A01G077000	chr7D	554467115	554467738	623	True	745	745	88.676	2218	2826	1	chr7D.!!$R3	608
19	TraesCS1A01G077000	chr4B	660542105	660543079	974	False	606	606	78.354	2229	3188	1	chr4B.!!$F1	959
20	TraesCS1A01G077000	chr7B	27271562	27272496	934	True	412	412	75.159	2218	3139	1	chr7B.!!$R3	921
21	TraesCS1A01G077000	chr2D	450256628	450257496	868	True	248	248	72.406	2269	3120	1	chr2D.!!$R1	851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
485	506	1.153568	CATCATGTCCACCGACGCT	60.154	57.895	0.00	0.0	42.37	5.07	F
1116	1158	0.599204	TGTTCAACTTCGGCGACTCC	60.599	55.000	10.16	0.0	0.00	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1561	1603	0.314898	GACGTCGATCGAGTACACGG	60.315	60.0	20.09	6.18	42.86	4.94	R
2771	2831	0.618458	GGGTGAGTGGCAGTCCATTA	59.382	55.0	19.21	0.00	45.62	1.90	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
202	223	1.506718	GCCACGATCTGAGACGTCA	59.493	57.895	19.50	0.00	40.76	4.35
211	232	3.514777	TGAGACGTCAGATTGTGGC	57.485	52.632	19.50	0.00	0.00	5.01
257	278	2.398554	CCCACATTTCTCCACGCGG	61.399	63.158	12.47	0.00	0.00	6.46
275	296	2.579201	CTGCCCATCGTCGTTCCT	59.421	61.111	0.00	0.00	0.00	3.36
338	359	3.518998	CGGTCGACGGGAGAGCAT	61.519	66.667	14.86	0.00	39.42	3.79
399	420	1.552578	GGGCGAATAGGTTTTTGGGT	58.447	50.000	0.00	0.00	0.00	4.51
445	466	2.096811	CGATCGTCTACTTCCTCTACGC	60.097	54.545	7.03	0.00	33.75	4.42
462	483	4.812476	CCCGCGTCGCCTTCATCA	62.812	66.667	12.44	0.00	0.00	3.07
485	506	1.153568	CATCATGTCCACCGACGCT	60.154	57.895	0.00	0.00	42.37	5.07
606	627	4.261741	GGTATAACTCGTTTATCCCGCTCA	60.262	45.833	0.00	0.00	32.31	4.26
647	668	4.156915	CCATGCTAGCGTTATACGTAGAC	58.843	47.826	6.73	1.62	44.73	2.59
680	701	6.570672	ATTAGCGTAGTATGTGCTAGCTTA	57.429	37.500	17.23	5.05	41.75	3.09
736	757	4.098807	TGCCATGCTAGTGATTTACTCGTA	59.901	41.667	0.00	0.00	40.89	3.43
770	791	9.710979	TTAATCGAAAAATTGCCTATTTACTCG	57.289	29.630	13.73	13.73	40.04	4.18
783	804	2.327081	TTACTCGACAACTCGCTCAC	57.673	50.000	0.00	0.00	39.96	3.51
802	823	2.973406	CACTCCCCTTATCCTTACCCTC	59.027	54.545	0.00	0.00	0.00	4.30
803	824	2.595380	ACTCCCCTTATCCTTACCCTCA	59.405	50.000	0.00	0.00	0.00	3.86
839	860	4.686972	TCGATGAAGACATAGCAAGAAGG	58.313	43.478	0.00	0.00	36.82	3.46
876	905	5.649782	ATTTGTATCCAGCTGTTCAAAGG	57.350	39.130	13.81	0.00	0.00	3.11
924	953	2.635915	TCGACCCAGACACCTACAAAAT	59.364	45.455	0.00	0.00	0.00	1.82
925	954	3.833650	TCGACCCAGACACCTACAAAATA	59.166	43.478	0.00	0.00	0.00	1.40
926	955	4.081862	TCGACCCAGACACCTACAAAATAG	60.082	45.833	0.00	0.00	0.00	1.73
967	1004	1.518903	AAGGAAACGCTGGAGCAAGC	61.519	55.000	0.00	0.00	42.21	4.01
978	1020	1.348696	TGGAGCAAGCAGTTGAGATCA	59.651	47.619	0.00	0.00	35.46	2.92
1116	1158	0.599204	TGTTCAACTTCGGCGACTCC	60.599	55.000	10.16	0.00	0.00	3.85
1247	1289	3.250744	ACATCGACTTCATTGGTACGTG	58.749	45.455	0.00	0.00	0.00	4.49
1389	1431	1.007038	TCGTCGGGTTCCAACTTCG	60.007	57.895	0.00	0.00	0.00	3.79
1394	1436	2.322830	GGGTTCCAACTTCGCCGAC	61.323	63.158	0.00	0.00	0.00	4.79
1481	1523	4.977393	ACGCAGGTGAACCAGTTT	57.023	50.000	1.62	0.00	38.89	2.66
1482	1524	3.184736	ACGCAGGTGAACCAGTTTT	57.815	47.368	1.62	0.00	38.89	2.43
1561	1603	3.471806	GGAGGACTTCCGGGGAGC	61.472	72.222	0.98	0.00	42.08	4.70
2039	2081	0.458669	ACGTGAACCTCAAGACGTGT	59.541	50.000	0.00	0.00	43.08	4.49
2275	2317	3.181443	ACTTTCCAAACTGGGATCTCGTT	60.181	43.478	0.00	0.00	38.32	3.85
2299	2341	5.761003	TGAGACAACATGCAAAATACAGTG	58.239	37.500	0.00	0.00	0.00	3.66
2305	2347	4.397420	ACATGCAAAATACAGTGAGGTGA	58.603	39.130	0.00	0.00	0.00	4.02
2339	2381	5.817816	CCAGACCTTACAAAGATTATTCGCT	59.182	40.000	0.00	0.00	0.00	4.93
2385	2427	2.920647	GCCGCTTTATTTGCTGAACGTT	60.921	45.455	0.00	0.00	0.00	3.99
2467	2509	1.200020	CGGTCCCAGCAAAGACAAATC	59.800	52.381	2.98	0.00	34.58	2.17
2526	2586	4.269603	CAGCAGTCCATCTCATTTAGTTCG	59.730	45.833	0.00	0.00	0.00	3.95
2585	2645	2.437897	CCTTGCTGGTTCCTGGCT	59.562	61.111	0.00	0.00	0.00	4.75
2588	2648	2.416107	CTTGCTGGTTCCTGGCTCCA	62.416	60.000	8.82	8.82	0.00	3.86
2630	2690	0.397254	CCGAGGAAAGCTCCCTCCTA	60.397	60.000	22.32	0.00	45.70	2.94
2695	2755	3.790744	GTTGCCGCATCAACATTGA	57.209	47.368	11.76	0.00	44.18	2.57
2698	2758	0.804364	TGCCGCATCAACATTGACTC	59.196	50.000	0.00	0.00	40.49	3.36
2758	2818	1.328279	GGCAGGGTTAGTTTGCTTGT	58.672	50.000	0.00	0.00	37.93	3.16
2768	2828	2.024414	AGTTTGCTTGTTCTTTCGCCT	58.976	42.857	0.00	0.00	0.00	5.52
2771	2831	1.388547	TGCTTGTTCTTTCGCCTGTT	58.611	45.000	0.00	0.00	0.00	3.16
2875	2935	3.449494	TTCTGGGCCAGCCAAAGCA	62.449	57.895	29.02	6.71	43.56	3.91
2901	2961	3.402681	CCCTGGACCATGACCGCT	61.403	66.667	0.00	0.00	0.00	5.52
2902	2962	2.124983	CCTGGACCATGACCGCTG	60.125	66.667	0.00	0.00	0.00	5.18
2904	2964	1.742880	CTGGACCATGACCGCTGTG	60.743	63.158	0.00	0.00	0.00	3.66
2911	2971	3.361174	TGACCGCTGTGTCATCGA	58.639	55.556	0.00	0.00	40.22	3.59
2912	2972	1.890174	TGACCGCTGTGTCATCGAT	59.110	52.632	0.00	0.00	40.22	3.59
2975	3048	0.689623	CTCTGAGGGCCAACTGACTT	59.310	55.000	6.18	0.00	0.00	3.01
3056	3129	2.368548	AGTGAAAACAGCCCCAAAATCC	59.631	45.455	0.00	0.00	0.00	3.01
3096	3169	1.603802	CTTCCACACGCAACACAGAAT	59.396	47.619	0.00	0.00	0.00	2.40
3101	3174	2.543848	CACACGCAACACAGAATACACT	59.456	45.455	0.00	0.00	0.00	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
202	223	1.003355	CCGTGACAGGCCACAATCT	60.003	57.895	5.01	0.00	36.89	2.40
206	227	2.842462	AGTCCGTGACAGGCCACA	60.842	61.111	5.01	0.00	36.89	4.17
211	232	2.567049	GTCCGAGTCCGTGACAGG	59.433	66.667	6.78	8.73	36.59	4.00
244	265	3.127533	GCAGCCGCGTGGAGAAAT	61.128	61.111	21.76	0.00	37.49	2.17
257	278	3.195698	GGAACGACGATGGGCAGC	61.196	66.667	0.00	0.00	0.00	5.25
338	359	2.029964	GGCGTGGTTTCGGAGACA	59.970	61.111	0.86	0.00	34.32	3.41
417	438	1.063764	GAAGTAGACGATCGGAAGCGT	59.936	52.381	20.98	8.67	44.33	5.07
445	466	4.812476	TGATGAAGGCGACGCGGG	62.812	66.667	14.61	2.38	0.00	6.13
460	481	2.699846	TCGGTGGACATGATGATGATGA	59.300	45.455	0.00	0.00	33.36	2.92
461	482	2.804527	GTCGGTGGACATGATGATGATG	59.195	50.000	0.00	0.00	42.91	3.07
462	483	2.546584	CGTCGGTGGACATGATGATGAT	60.547	50.000	0.00	0.00	43.61	2.45
497	518	1.672356	GGCTTCAGCTTTCTCGGCA	60.672	57.895	0.00	0.00	41.70	5.69
575	596	6.183360	GGATAAACGAGTTATACCCTCCAGTT	60.183	42.308	0.00	0.00	32.26	3.16
606	627	6.209391	AGCATGGCTAAAACAGAAAACAGTAT	59.791	34.615	0.00	0.00	36.99	2.12
647	668	6.847792	CACATACTACGCTAATTGCAGAAATG	59.152	38.462	0.00	0.00	43.06	2.32
697	718	4.689812	GCATGGCATTGACACAAATAAACA	59.310	37.500	0.00	0.00	0.00	2.83
752	773	7.448748	AGTTGTCGAGTAAATAGGCAATTTT	57.551	32.000	2.07	0.00	38.71	1.82
770	791	1.079750	GGGGAGTGAGCGAGTTGTC	60.080	63.158	0.00	0.00	0.00	3.18
783	804	3.243724	CTGAGGGTAAGGATAAGGGGAG	58.756	54.545	0.00	0.00	0.00	4.30
812	833	4.152607	TGCTATGTCTTCATCGATCTCG	57.847	45.455	0.00	0.00	41.45	4.04
858	887	3.557595	CGATCCTTTGAACAGCTGGATAC	59.442	47.826	19.93	6.71	37.62	2.24
924	953	3.265221	TCCTCCTCCGAAGTTGACTACTA	59.735	47.826	0.00	0.00	35.54	1.82
925	954	2.041350	TCCTCCTCCGAAGTTGACTACT	59.959	50.000	0.00	0.00	39.32	2.57
926	955	2.444421	TCCTCCTCCGAAGTTGACTAC	58.556	52.381	0.00	0.00	0.00	2.73
967	1004	7.010830	TCGATTAATCAGCTTTGATCTCAACTG	59.989	37.037	15.57	4.86	35.28	3.16
978	1020	6.259608	CCATGTTCTCTCGATTAATCAGCTTT	59.740	38.462	15.57	0.00	0.00	3.51
1050	1092	2.032223	AGCTCACAGCACTGCAGG	59.968	61.111	19.93	8.27	45.56	4.85
1389	1431	2.087009	CGAAGTTCACTCCGTCGGC	61.087	63.158	6.34	0.00	0.00	5.54
1394	1436	2.049433	ACCGCGAAGTTCACTCCG	60.049	61.111	8.23	0.00	0.00	4.63
1481	1523	2.035321	GGTCCGGTTCTTGAAATGCAAA	59.965	45.455	0.00	0.00	35.74	3.68
1482	1524	1.611491	GGTCCGGTTCTTGAAATGCAA	59.389	47.619	0.00	0.00	34.73	4.08
1561	1603	0.314898	GACGTCGATCGAGTACACGG	60.315	60.000	20.09	6.18	42.86	4.94
2177	2219	2.862541	TCTTATTTGCACAGTGCCTGT	58.137	42.857	23.06	10.57	46.51	4.00
2257	2299	2.778299	CAAACGAGATCCCAGTTTGGA	58.222	47.619	21.10	0.00	46.28	3.53
2262	2304	2.248248	TGTCTCAAACGAGATCCCAGT	58.752	47.619	0.00	0.00	41.51	4.00
2275	2317	6.039159	TCACTGTATTTTGCATGTTGTCTCAA	59.961	34.615	0.00	0.00	0.00	3.02
2299	2341	2.939103	GTCTGGTTGCATGTATCACCTC	59.061	50.000	6.27	0.00	0.00	3.85
2305	2347	4.568072	TGTAAGGTCTGGTTGCATGTAT	57.432	40.909	0.00	0.00	0.00	2.29
2339	2381	2.778270	TCTGCTAGCTAGAGAGGGTGTA	59.222	50.000	25.15	0.34	0.00	2.90
2385	2427	1.822425	TGGAGGGTCACTTGGGTTAA	58.178	50.000	0.00	0.00	0.00	2.01
2467	2509	1.336609	GCTGCAGAGCAAGGAAAAAGG	60.337	52.381	20.43	0.00	45.46	3.11
2585	2645	2.679639	GCCTGTCATGTATTTCCGTGGA	60.680	50.000	0.00	0.00	0.00	4.02
2588	2648	2.027192	AGTGCCTGTCATGTATTTCCGT	60.027	45.455	0.00	0.00	0.00	4.69
2695	2755	2.122954	GGAGGGGTGGGTGAGAGT	59.877	66.667	0.00	0.00	0.00	3.24
2698	2758	1.992277	CTGAGGAGGGGTGGGTGAG	60.992	68.421	0.00	0.00	0.00	3.51
2758	2818	3.751175	CAGTCCATTAACAGGCGAAAGAA	59.249	43.478	0.00	0.00	0.00	2.52
2768	2828	2.552155	GGTGAGTGGCAGTCCATTAACA	60.552	50.000	19.21	0.00	45.62	2.41
2771	2831	0.618458	GGGTGAGTGGCAGTCCATTA	59.382	55.000	19.21	0.00	45.62	1.90
2875	2935	1.281867	CATGGTCCAGGGTGTGTATGT	59.718	52.381	0.00	0.00	0.00	2.29
2921	2981	0.944386	GCTCTTGTCTTGGTTTGCGA	59.056	50.000	0.00	0.00	0.00	5.10
3096	3169	8.413229	CAAAGGAGGAAAATCAAAGAAAGTGTA	58.587	33.333	0.00	0.00	0.00	2.90
3101	3174	8.078060	ACTTCAAAGGAGGAAAATCAAAGAAA	57.922	30.769	0.00	0.00	0.00	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.