Multiple sequence alignment - TraesCS1A01G076900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G076900 | chr1A | 100.000 | 4928 | 0 | 0 | 1 | 4928 | 59612363 | 59617290 | 0.000000e+00 | 9101.0 |
1 | TraesCS1A01G076900 | chr1B | 93.895 | 3227 | 124 | 32 | 654 | 3855 | 98166387 | 98169565 | 0.000000e+00 | 4800.0 |
2 | TraesCS1A01G076900 | chr1B | 92.928 | 608 | 38 | 4 | 1 | 603 | 272476891 | 272476284 | 0.000000e+00 | 880.0 |
3 | TraesCS1A01G076900 | chr1B | 90.055 | 181 | 10 | 5 | 2998 | 3178 | 243757721 | 243757893 | 1.380000e-55 | 228.0 |
4 | TraesCS1A01G076900 | chr1D | 97.491 | 1953 | 45 | 4 | 1906 | 3855 | 61485263 | 61487214 | 0.000000e+00 | 3332.0 |
5 | TraesCS1A01G076900 | chr1D | 88.442 | 969 | 48 | 24 | 599 | 1532 | 61484320 | 61485259 | 0.000000e+00 | 1110.0 |
6 | TraesCS1A01G076900 | chr1D | 88.514 | 148 | 17 | 0 | 4779 | 4926 | 361301182 | 361301035 | 3.920000e-41 | 180.0 |
7 | TraesCS1A01G076900 | chr7A | 98.353 | 607 | 8 | 2 | 1 | 605 | 576104441 | 576105047 | 0.000000e+00 | 1064.0 |
8 | TraesCS1A01G076900 | chr7A | 80.672 | 119 | 22 | 1 | 4062 | 4180 | 29648254 | 29648371 | 1.890000e-14 | 91.6 |
9 | TraesCS1A01G076900 | chr5A | 98.350 | 606 | 8 | 2 | 1 | 604 | 255616371 | 255615766 | 0.000000e+00 | 1062.0 |
10 | TraesCS1A01G076900 | chr5A | 97.333 | 600 | 12 | 3 | 1 | 596 | 476495591 | 476496190 | 0.000000e+00 | 1016.0 |
11 | TraesCS1A01G076900 | chr5A | 88.667 | 150 | 17 | 0 | 4779 | 4928 | 437928365 | 437928514 | 3.030000e-42 | 183.0 |
12 | TraesCS1A01G076900 | chr3D | 88.494 | 478 | 47 | 6 | 97 | 571 | 335225660 | 335226132 | 5.530000e-159 | 571.0 |
13 | TraesCS1A01G076900 | chr7D | 88.075 | 478 | 49 | 6 | 97 | 571 | 103635637 | 103635165 | 1.200000e-155 | 560.0 |
14 | TraesCS1A01G076900 | chr7D | 89.116 | 147 | 16 | 0 | 4782 | 4928 | 21119232 | 21119086 | 3.030000e-42 | 183.0 |
15 | TraesCS1A01G076900 | chr2B | 87.238 | 478 | 52 | 7 | 97 | 571 | 59638540 | 59639011 | 2.020000e-148 | 536.0 |
16 | TraesCS1A01G076900 | chr2B | 87.238 | 478 | 52 | 7 | 97 | 571 | 97384671 | 97385142 | 2.020000e-148 | 536.0 |
17 | TraesCS1A01G076900 | chr2B | 92.683 | 287 | 13 | 1 | 4352 | 4630 | 227843084 | 227842798 | 1.650000e-109 | 407.0 |
18 | TraesCS1A01G076900 | chr2B | 91.946 | 149 | 12 | 0 | 4779 | 4927 | 310941270 | 310941122 | 5.000000e-50 | 209.0 |
19 | TraesCS1A01G076900 | chr2B | 92.308 | 78 | 4 | 2 | 4281 | 4356 | 227843254 | 227843177 | 5.220000e-20 | 110.0 |
20 | TraesCS1A01G076900 | chr3B | 87.056 | 479 | 55 | 6 | 97 | 571 | 768727953 | 768727478 | 7.260000e-148 | 534.0 |
21 | TraesCS1A01G076900 | chr2A | 82.895 | 532 | 56 | 26 | 3850 | 4356 | 180342523 | 180342002 | 3.500000e-121 | 446.0 |
22 | TraesCS1A01G076900 | chr2A | 94.624 | 279 | 15 | 0 | 4352 | 4630 | 180341909 | 180341631 | 2.720000e-117 | 433.0 |
23 | TraesCS1A01G076900 | chr2A | 90.000 | 180 | 18 | 0 | 2998 | 3177 | 138874916 | 138875095 | 2.970000e-57 | 233.0 |
24 | TraesCS1A01G076900 | chr2D | 93.907 | 279 | 17 | 0 | 4352 | 4630 | 169974044 | 169974322 | 5.900000e-114 | 422.0 |
25 | TraesCS1A01G076900 | chr2D | 92.520 | 254 | 14 | 2 | 3932 | 4180 | 169973405 | 169973658 | 4.690000e-95 | 359.0 |
26 | TraesCS1A01G076900 | chr7B | 91.713 | 181 | 15 | 0 | 2998 | 3178 | 312427260 | 312427440 | 8.190000e-63 | 252.0 |
27 | TraesCS1A01G076900 | chr7B | 90.608 | 181 | 13 | 4 | 2998 | 3178 | 379919855 | 379920031 | 2.290000e-58 | 237.0 |
28 | TraesCS1A01G076900 | chr6A | 91.713 | 181 | 14 | 1 | 2998 | 3178 | 222568611 | 222568790 | 2.950000e-62 | 250.0 |
29 | TraesCS1A01G076900 | chr4D | 91.667 | 180 | 15 | 0 | 2998 | 3177 | 286960775 | 286960954 | 2.950000e-62 | 250.0 |
30 | TraesCS1A01G076900 | chr4D | 88.667 | 150 | 17 | 0 | 4779 | 4928 | 15324066 | 15324215 | 3.030000e-42 | 183.0 |
31 | TraesCS1A01G076900 | chr4B | 90.055 | 181 | 14 | 4 | 2998 | 3178 | 207149136 | 207149312 | 1.070000e-56 | 231.0 |
32 | TraesCS1A01G076900 | chr3A | 82.375 | 261 | 24 | 9 | 1858 | 2118 | 248214235 | 248213997 | 1.800000e-49 | 207.0 |
33 | TraesCS1A01G076900 | chr3A | 89.474 | 152 | 16 | 0 | 4777 | 4928 | 734632308 | 734632157 | 5.030000e-45 | 193.0 |
34 | TraesCS1A01G076900 | chr5B | 90.000 | 150 | 15 | 0 | 4779 | 4928 | 657159663 | 657159812 | 1.400000e-45 | 195.0 |
35 | TraesCS1A01G076900 | chr6D | 89.333 | 150 | 16 | 0 | 4779 | 4928 | 293736434 | 293736285 | 6.510000e-44 | 189.0 |
36 | TraesCS1A01G076900 | chr5D | 88.158 | 152 | 16 | 2 | 4778 | 4928 | 336454630 | 336454480 | 3.920000e-41 | 180.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G076900 | chr1A | 59612363 | 59617290 | 4927 | False | 9101.0 | 9101 | 100.0000 | 1 | 4928 | 1 | chr1A.!!$F1 | 4927 |
1 | TraesCS1A01G076900 | chr1B | 98166387 | 98169565 | 3178 | False | 4800.0 | 4800 | 93.8950 | 654 | 3855 | 1 | chr1B.!!$F1 | 3201 |
2 | TraesCS1A01G076900 | chr1B | 272476284 | 272476891 | 607 | True | 880.0 | 880 | 92.9280 | 1 | 603 | 1 | chr1B.!!$R1 | 602 |
3 | TraesCS1A01G076900 | chr1D | 61484320 | 61487214 | 2894 | False | 2221.0 | 3332 | 92.9665 | 599 | 3855 | 2 | chr1D.!!$F1 | 3256 |
4 | TraesCS1A01G076900 | chr7A | 576104441 | 576105047 | 606 | False | 1064.0 | 1064 | 98.3530 | 1 | 605 | 1 | chr7A.!!$F2 | 604 |
5 | TraesCS1A01G076900 | chr5A | 255615766 | 255616371 | 605 | True | 1062.0 | 1062 | 98.3500 | 1 | 604 | 1 | chr5A.!!$R1 | 603 |
6 | TraesCS1A01G076900 | chr5A | 476495591 | 476496190 | 599 | False | 1016.0 | 1016 | 97.3330 | 1 | 596 | 1 | chr5A.!!$F2 | 595 |
7 | TraesCS1A01G076900 | chr2A | 180341631 | 180342523 | 892 | True | 439.5 | 446 | 88.7595 | 3850 | 4630 | 2 | chr2A.!!$R1 | 780 |
8 | TraesCS1A01G076900 | chr2D | 169973405 | 169974322 | 917 | False | 390.5 | 422 | 93.2135 | 3932 | 4630 | 2 | chr2D.!!$F1 | 698 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
867 | 892 | 0.471591 | TCCACTTTTGCTTGGCCCAT | 60.472 | 50.0 | 0.0 | 0.00 | 32.37 | 4.00 | F |
1087 | 1113 | 0.043940 | AGCTCCCCTTCCTCATCTGT | 59.956 | 55.0 | 0.0 | 0.00 | 0.00 | 3.41 | F |
1110 | 1136 | 0.108585 | TCAAGAACAGCACCCAGGAC | 59.891 | 55.0 | 0.0 | 0.00 | 0.00 | 3.85 | F |
1842 | 1889 | 0.179067 | TAGGATTAAGCCGCGGTTGG | 60.179 | 55.0 | 28.7 | 0.27 | 0.00 | 3.77 | F |
3546 | 3602 | 0.110486 | ACAGAACCGTGGCAATCCTT | 59.890 | 50.0 | 0.0 | 0.00 | 0.00 | 3.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1774 | 1821 | 0.179084 | ACGCATGCTACACGGCTAAT | 60.179 | 50.000 | 17.13 | 0.0 | 0.00 | 1.73 | R |
2368 | 2424 | 0.463474 | GGCTGCTCCTCTCATGTTCC | 60.463 | 60.000 | 0.00 | 0.0 | 0.00 | 3.62 | R |
2401 | 2457 | 1.883638 | GCAACTCTGGGACATGCTGAA | 60.884 | 52.381 | 0.00 | 0.0 | 38.20 | 3.02 | R |
3755 | 3811 | 0.179062 | CTGTACCATGCTGGCTCTCC | 60.179 | 60.000 | 2.50 | 0.0 | 42.67 | 3.71 | R |
4743 | 5021 | 0.035317 | CAGGTACAGGCTTGCTGTGA | 59.965 | 55.000 | 0.00 | 0.0 | 36.37 | 3.58 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
213 | 217 | 4.271776 | TCATGCACGCATCTCTAATCTTTG | 59.728 | 41.667 | 0.44 | 0.00 | 33.90 | 2.77 |
265 | 269 | 6.049149 | ACATGGAACCTTTATGATCTACACG | 58.951 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
266 | 270 | 5.670792 | TGGAACCTTTATGATCTACACGT | 57.329 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
574 | 579 | 9.807649 | GCAATAATTTGATTGGTAACATCTCTT | 57.192 | 29.630 | 3.69 | 0.00 | 40.27 | 2.85 |
581 | 586 | 2.253610 | TGGTAACATCTCTTCCGTGGT | 58.746 | 47.619 | 0.00 | 0.00 | 46.17 | 4.16 |
605 | 611 | 2.030823 | CGCACGGTATTCGACTAGTACA | 59.969 | 50.000 | 0.00 | 0.00 | 42.43 | 2.90 |
621 | 627 | 9.674824 | CGACTAGTACAATATAAAGTAACCCAG | 57.325 | 37.037 | 0.00 | 0.00 | 0.00 | 4.45 |
625 | 631 | 7.495055 | AGTACAATATAAAGTAACCCAGACGG | 58.505 | 38.462 | 0.00 | 0.00 | 37.81 | 4.79 |
628 | 634 | 3.926058 | ATAAAGTAACCCAGACGGCAT | 57.074 | 42.857 | 0.00 | 0.00 | 33.26 | 4.40 |
629 | 635 | 2.109425 | AAAGTAACCCAGACGGCATC | 57.891 | 50.000 | 0.00 | 0.00 | 33.26 | 3.91 |
634 | 645 | 1.995376 | AACCCAGACGGCATCTTTTT | 58.005 | 45.000 | 0.00 | 0.00 | 34.41 | 1.94 |
671 | 682 | 0.546122 | TACATCACCCACCAGATGCC | 59.454 | 55.000 | 0.00 | 0.00 | 44.16 | 4.40 |
678 | 689 | 2.345760 | CCACCAGATGCCTTGGCAC | 61.346 | 63.158 | 17.22 | 10.73 | 0.00 | 5.01 |
730 | 741 | 3.647771 | GGGTGTTTCCGCCTCCCT | 61.648 | 66.667 | 0.00 | 0.00 | 41.26 | 4.20 |
732 | 743 | 3.056328 | GTGTTTCCGCCTCCCTGC | 61.056 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
759 | 778 | 1.068250 | GTGGGAGGATAGAGCGCAC | 59.932 | 63.158 | 11.47 | 2.25 | 38.10 | 5.34 |
786 | 805 | 1.134401 | TGAGCAAAGGATCCTTAGGCG | 60.134 | 52.381 | 30.38 | 20.24 | 39.70 | 5.52 |
787 | 806 | 0.912486 | AGCAAAGGATCCTTAGGCGT | 59.088 | 50.000 | 30.38 | 21.46 | 39.70 | 5.68 |
843 | 862 | 1.242076 | CCTCTCCAGCCACAAGTTTG | 58.758 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
846 | 865 | 2.133742 | CTCCAGCCACAAGTTTGCGG | 62.134 | 60.000 | 0.00 | 0.00 | 33.57 | 5.69 |
867 | 892 | 0.471591 | TCCACTTTTGCTTGGCCCAT | 60.472 | 50.000 | 0.00 | 0.00 | 32.37 | 4.00 |
1013 | 1039 | 0.616371 | CTCCCCGTCCACCACAATTA | 59.384 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1015 | 1041 | 2.436542 | CTCCCCGTCCACCACAATTATA | 59.563 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
1016 | 1042 | 2.171027 | TCCCCGTCCACCACAATTATAC | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
1017 | 1043 | 2.092861 | CCCCGTCCACCACAATTATACA | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1018 | 1044 | 3.611970 | CCCGTCCACCACAATTATACAA | 58.388 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
1019 | 1045 | 3.625764 | CCCGTCCACCACAATTATACAAG | 59.374 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
1020 | 1046 | 3.064820 | CCGTCCACCACAATTATACAAGC | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
1021 | 1047 | 3.687212 | CGTCCACCACAATTATACAAGCA | 59.313 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
1022 | 1048 | 4.201812 | CGTCCACCACAATTATACAAGCAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.24 |
1023 | 1049 | 3.694072 | TCCACCACAATTATACAAGCAGC | 59.306 | 43.478 | 0.00 | 0.00 | 0.00 | 5.25 |
1066 | 1092 | 1.699656 | CTTCCGCGCATCCACAAGAG | 61.700 | 60.000 | 8.75 | 0.00 | 0.00 | 2.85 |
1077 | 1103 | 1.377994 | CACAAGAGCAGCTCCCCTT | 59.622 | 57.895 | 19.40 | 4.09 | 0.00 | 3.95 |
1080 | 1106 | 1.229788 | AAGAGCAGCTCCCCTTCCT | 60.230 | 57.895 | 19.40 | 0.00 | 0.00 | 3.36 |
1082 | 1108 | 1.992277 | GAGCAGCTCCCCTTCCTCA | 60.992 | 63.158 | 11.84 | 0.00 | 0.00 | 3.86 |
1083 | 1109 | 1.307691 | AGCAGCTCCCCTTCCTCAT | 60.308 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
1084 | 1110 | 1.148048 | GCAGCTCCCCTTCCTCATC | 59.852 | 63.158 | 0.00 | 0.00 | 0.00 | 2.92 |
1085 | 1111 | 1.344191 | GCAGCTCCCCTTCCTCATCT | 61.344 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1086 | 1112 | 0.469070 | CAGCTCCCCTTCCTCATCTG | 59.531 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1087 | 1113 | 0.043940 | AGCTCCCCTTCCTCATCTGT | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1088 | 1114 | 0.915364 | GCTCCCCTTCCTCATCTGTT | 59.085 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1089 | 1115 | 1.134250 | GCTCCCCTTCCTCATCTGTTC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
1090 | 1116 | 2.476199 | CTCCCCTTCCTCATCTGTTCT | 58.524 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1091 | 1117 | 2.843113 | CTCCCCTTCCTCATCTGTTCTT | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1092 | 1118 | 2.840651 | TCCCCTTCCTCATCTGTTCTTC | 59.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1093 | 1119 | 2.573462 | CCCCTTCCTCATCTGTTCTTCA | 59.427 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1094 | 1120 | 3.009473 | CCCCTTCCTCATCTGTTCTTCAA | 59.991 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
1095 | 1121 | 4.260170 | CCCTTCCTCATCTGTTCTTCAAG | 58.740 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
1096 | 1122 | 4.019860 | CCCTTCCTCATCTGTTCTTCAAGA | 60.020 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
1097 | 1123 | 5.513788 | CCCTTCCTCATCTGTTCTTCAAGAA | 60.514 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1110 | 1136 | 0.108585 | TCAAGAACAGCACCCAGGAC | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1132 | 1158 | 1.065551 | AGACAGAAAAGGTTTGTGCGC | 59.934 | 47.619 | 0.00 | 0.00 | 0.00 | 6.09 |
1146 | 1172 | 1.338105 | TGTGCGCTGCTGATTTACTCT | 60.338 | 47.619 | 9.73 | 0.00 | 0.00 | 3.24 |
1351 | 1383 | 4.889112 | TCCGGATCGAGGGTCGGG | 62.889 | 72.222 | 0.00 | 10.54 | 42.44 | 5.14 |
1443 | 1489 | 1.851021 | CTCGCCATCGCCAACAACAA | 61.851 | 55.000 | 0.00 | 0.00 | 35.26 | 2.83 |
1445 | 1491 | 1.734117 | GCCATCGCCAACAACAAGC | 60.734 | 57.895 | 0.00 | 0.00 | 0.00 | 4.01 |
1455 | 1501 | 1.403679 | CAACAACAAGCAACGGAAGGA | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
1456 | 1502 | 1.981256 | ACAACAAGCAACGGAAGGAT | 58.019 | 45.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1462 | 1509 | 2.044123 | AGCAACGGAAGGATGGATTC | 57.956 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1463 | 1510 | 0.657840 | GCAACGGAAGGATGGATTCG | 59.342 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1532 | 1579 | 3.657350 | CCTTCCCCCGGCCTGAAA | 61.657 | 66.667 | 0.00 | 0.00 | 0.00 | 2.69 |
1573 | 1620 | 1.051812 | CCAGAGTCCCATATTCCGCT | 58.948 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1574 | 1621 | 1.417890 | CCAGAGTCCCATATTCCGCTT | 59.582 | 52.381 | 0.00 | 0.00 | 0.00 | 4.68 |
1575 | 1622 | 2.548920 | CCAGAGTCCCATATTCCGCTTC | 60.549 | 54.545 | 0.00 | 0.00 | 0.00 | 3.86 |
1576 | 1623 | 1.694696 | AGAGTCCCATATTCCGCTTCC | 59.305 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
1577 | 1624 | 0.393077 | AGTCCCATATTCCGCTTCCG | 59.607 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1578 | 1625 | 1.070786 | TCCCATATTCCGCTTCCGC | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
1624 | 1671 | 4.363990 | CTCCGTGCAGCCGACTGT | 62.364 | 66.667 | 0.00 | 0.00 | 46.30 | 3.55 |
1740 | 1787 | 6.753279 | CCGTGAATTGATATGTTGATGCTTTT | 59.247 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
1792 | 1839 | 0.937304 | AATTAGCCGTGTAGCATGCG | 59.063 | 50.000 | 13.01 | 0.00 | 34.23 | 4.73 |
1798 | 1845 | 1.074319 | CCGTGTAGCATGCGTAACGT | 61.074 | 55.000 | 27.88 | 9.95 | 0.00 | 3.99 |
1825 | 1872 | 2.941720 | ACGGACTTAACTACGAGGCTAG | 59.058 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
1839 | 1886 | 1.069258 | GCTAGGATTAAGCCGCGGT | 59.931 | 57.895 | 28.70 | 10.76 | 33.73 | 5.68 |
1840 | 1887 | 0.532196 | GCTAGGATTAAGCCGCGGTT | 60.532 | 55.000 | 28.70 | 20.13 | 33.73 | 4.44 |
1841 | 1888 | 1.217882 | CTAGGATTAAGCCGCGGTTG | 58.782 | 55.000 | 28.70 | 1.59 | 0.00 | 3.77 |
1842 | 1889 | 0.179067 | TAGGATTAAGCCGCGGTTGG | 60.179 | 55.000 | 28.70 | 0.27 | 0.00 | 3.77 |
1843 | 1890 | 2.478033 | GGATTAAGCCGCGGTTGGG | 61.478 | 63.158 | 28.70 | 0.00 | 0.00 | 4.12 |
1873 | 1920 | 2.228343 | ACTCGCGGTTAGAGTATATGGC | 59.772 | 50.000 | 6.13 | 0.00 | 46.06 | 4.40 |
1930 | 1980 | 1.806542 | TCTGCCTTTCGCTTAGCTTTG | 59.193 | 47.619 | 1.76 | 0.00 | 38.78 | 2.77 |
2041 | 2096 | 3.438781 | TCGGCTATTTGCAAACTGGTTAG | 59.561 | 43.478 | 15.41 | 12.67 | 45.15 | 2.34 |
2138 | 2194 | 7.672240 | TGTCTGACATACATGTAGTTTGGTTA | 58.328 | 34.615 | 11.91 | 1.30 | 41.95 | 2.85 |
2368 | 2424 | 1.342082 | AATGTTTCGACGACGCCGAG | 61.342 | 55.000 | 6.33 | 0.00 | 37.35 | 4.63 |
2401 | 2457 | 1.835927 | GCAGCCAACAGGAGAGGTCT | 61.836 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2411 | 2467 | 1.830477 | AGGAGAGGTCTTCAGCATGTC | 59.170 | 52.381 | 0.00 | 0.00 | 37.40 | 3.06 |
2458 | 2514 | 1.707427 | ACAGGGCCTTCAGAAGAACAT | 59.293 | 47.619 | 12.14 | 0.00 | 0.00 | 2.71 |
2581 | 2637 | 6.923508 | TCATATAGAAAGTAATGTGCGAGTGG | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
2648 | 2704 | 9.500785 | AAAAACTTTTTCAGGAGTCAATTTTCA | 57.499 | 25.926 | 0.00 | 0.00 | 0.00 | 2.69 |
3132 | 3188 | 2.046217 | GTTCACCGGAAGAGGGGC | 60.046 | 66.667 | 9.46 | 0.00 | 33.82 | 5.80 |
3301 | 3357 | 2.095567 | CAGTGCACTGCTGTAAATGGAC | 60.096 | 50.000 | 32.39 | 0.00 | 37.15 | 4.02 |
3408 | 3464 | 3.392285 | TGTTCACCATATGCTATGCCTCT | 59.608 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
3425 | 3481 | 3.231818 | CCTCTTGATAGTATGGTCCCGT | 58.768 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
3461 | 3517 | 6.095440 | GTGTGGATGTGTTGCTAATCCTAATT | 59.905 | 38.462 | 2.85 | 0.00 | 40.53 | 1.40 |
3546 | 3602 | 0.110486 | ACAGAACCGTGGCAATCCTT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3615 | 3671 | 3.657398 | TGATCCAAAGTCATCCATGCT | 57.343 | 42.857 | 0.00 | 0.00 | 0.00 | 3.79 |
3617 | 3673 | 5.114764 | TGATCCAAAGTCATCCATGCTTA | 57.885 | 39.130 | 0.00 | 0.00 | 0.00 | 3.09 |
3618 | 3674 | 4.883585 | TGATCCAAAGTCATCCATGCTTAC | 59.116 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
3755 | 3811 | 2.771089 | TGTTCTGAGCTTGCAAGTAGG | 58.229 | 47.619 | 26.55 | 14.54 | 0.00 | 3.18 |
3879 | 3936 | 1.876497 | ATTTGCCCGAGCGTTGCAAT | 61.876 | 50.000 | 0.59 | 0.00 | 43.78 | 3.56 |
3880 | 3937 | 2.745906 | TTTGCCCGAGCGTTGCAATG | 62.746 | 55.000 | 14.54 | 14.54 | 43.78 | 2.82 |
3882 | 3939 | 2.745884 | CCCGAGCGTTGCAATGGA | 60.746 | 61.111 | 19.93 | 0.00 | 0.00 | 3.41 |
3887 | 3944 | 1.069296 | CGAGCGTTGCAATGGAAGAAA | 60.069 | 47.619 | 19.93 | 0.00 | 0.00 | 2.52 |
3888 | 3945 | 2.604373 | CGAGCGTTGCAATGGAAGAAAA | 60.604 | 45.455 | 19.93 | 0.00 | 0.00 | 2.29 |
3927 | 3984 | 7.275920 | ACCCTAATTTAGTAAGCATGACTCAG | 58.724 | 38.462 | 0.00 | 0.00 | 28.07 | 3.35 |
3930 | 3988 | 6.893958 | AATTTAGTAAGCATGACTCAGTCG | 57.106 | 37.500 | 0.00 | 0.00 | 34.95 | 4.18 |
3944 | 4002 | 2.603776 | GTCGTCCCCCTCACAGGT | 60.604 | 66.667 | 0.00 | 0.00 | 31.93 | 4.00 |
3968 | 4027 | 1.782028 | GCCTTCGTTTCAACACGGCT | 61.782 | 55.000 | 0.00 | 0.00 | 40.74 | 5.52 |
3997 | 4056 | 3.203487 | TCATATTGTTGGTTACCCCTCCC | 59.797 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4001 | 4060 | 1.542881 | TTGGTTACCCCTCCCCCTG | 60.543 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
4004 | 4063 | 2.039951 | TTACCCCTCCCCCTGTCG | 59.960 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
4024 | 4087 | 4.260656 | GTCGCTTCTTTAATTGCAATGACG | 59.739 | 41.667 | 13.82 | 4.30 | 0.00 | 4.35 |
4070 | 4133 | 8.958119 | ATAATTAGAAACACACCACGATATGT | 57.042 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
4181 | 4244 | 9.979270 | GCATGAAGAATCATATTTATCTAACGG | 57.021 | 33.333 | 0.00 | 0.00 | 44.53 | 4.44 |
4254 | 4352 | 5.714047 | TGTTTGAAACACACATGCTTTACA | 58.286 | 33.333 | 6.66 | 0.00 | 36.25 | 2.41 |
4260 | 4358 | 7.711846 | TGAAACACACATGCTTTACAATACTT | 58.288 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
4267 | 4365 | 7.647715 | ACACATGCTTTACAATACTTGTTTGTC | 59.352 | 33.333 | 0.00 | 0.00 | 42.22 | 3.18 |
4269 | 4367 | 6.606234 | TGCTTTACAATACTTGTTTGTCGA | 57.394 | 33.333 | 0.00 | 0.00 | 42.22 | 4.20 |
4305 | 4403 | 1.074775 | TGGCAACGGGAGCAGAAAT | 59.925 | 52.632 | 0.00 | 0.00 | 42.51 | 2.17 |
4307 | 4405 | 0.109132 | GGCAACGGGAGCAGAAATTG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4314 | 4414 | 2.675348 | CGGGAGCAGAAATTGAGACTTC | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4322 | 4422 | 5.451798 | GCAGAAATTGAGACTTCAAAACCCA | 60.452 | 40.000 | 0.00 | 0.00 | 45.82 | 4.51 |
4324 | 4424 | 5.302823 | AGAAATTGAGACTTCAAAACCCAGG | 59.697 | 40.000 | 0.00 | 0.00 | 45.82 | 4.45 |
4337 | 4437 | 2.350863 | ACCCAGGGAGAGACAAATCT | 57.649 | 50.000 | 14.54 | 0.00 | 38.15 | 2.40 |
4377 | 4655 | 9.412460 | AGATGAAGATTACAAATCCTATTTGCA | 57.588 | 29.630 | 11.32 | 0.00 | 32.93 | 4.08 |
4457 | 4735 | 9.471702 | AATTGATTGAGATTGGAAGACTTATGT | 57.528 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
4468 | 4746 | 7.770801 | TGGAAGACTTATGTATCATTTGTCG | 57.229 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4609 | 4887 | 1.043673 | CAAGTAGTAGCCCGGCCTCT | 61.044 | 60.000 | 5.55 | 7.48 | 0.00 | 3.69 |
4630 | 4908 | 6.000246 | TCTAATTATGTGCCTCCATGTGAA | 58.000 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
4631 | 4909 | 4.989279 | AATTATGTGCCTCCATGTGAAC | 57.011 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
4632 | 4910 | 2.418368 | TATGTGCCTCCATGTGAACC | 57.582 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
4633 | 4911 | 0.405198 | ATGTGCCTCCATGTGAACCA | 59.595 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4634 | 4912 | 0.405198 | TGTGCCTCCATGTGAACCAT | 59.595 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4635 | 4913 | 1.203038 | TGTGCCTCCATGTGAACCATT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
4636 | 4914 | 1.474077 | GTGCCTCCATGTGAACCATTC | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
4637 | 4915 | 1.355381 | TGCCTCCATGTGAACCATTCT | 59.645 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
4638 | 4916 | 1.747355 | GCCTCCATGTGAACCATTCTG | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
4639 | 4917 | 2.881403 | GCCTCCATGTGAACCATTCTGT | 60.881 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4640 | 4918 | 3.424703 | CCTCCATGTGAACCATTCTGTT | 58.575 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
4641 | 4919 | 3.441572 | CCTCCATGTGAACCATTCTGTTC | 59.558 | 47.826 | 0.00 | 0.00 | 43.90 | 3.18 |
4654 | 4932 | 7.865706 | ACCATTCTGTTCAGTAAATACATCC | 57.134 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4655 | 4933 | 7.402054 | ACCATTCTGTTCAGTAAATACATCCA | 58.598 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
4656 | 4934 | 7.888021 | ACCATTCTGTTCAGTAAATACATCCAA | 59.112 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
4657 | 4935 | 8.739039 | CCATTCTGTTCAGTAAATACATCCAAA | 58.261 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
4658 | 4936 | 9.559958 | CATTCTGTTCAGTAAATACATCCAAAC | 57.440 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
4659 | 4937 | 8.684386 | TTCTGTTCAGTAAATACATCCAAACA | 57.316 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
4660 | 4938 | 8.322906 | TCTGTTCAGTAAATACATCCAAACAG | 57.677 | 34.615 | 0.00 | 0.00 | 41.33 | 3.16 |
4661 | 4939 | 7.936847 | TCTGTTCAGTAAATACATCCAAACAGT | 59.063 | 33.333 | 10.21 | 0.00 | 40.98 | 3.55 |
4662 | 4940 | 7.870826 | TGTTCAGTAAATACATCCAAACAGTG | 58.129 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
4680 | 4958 | 5.930135 | ACAGTGGAAATTCTGTTCAGTAGT | 58.070 | 37.500 | 0.00 | 0.00 | 41.33 | 2.73 |
4681 | 4959 | 5.760253 | ACAGTGGAAATTCTGTTCAGTAGTG | 59.240 | 40.000 | 0.00 | 0.00 | 41.33 | 2.74 |
4682 | 4960 | 4.757149 | AGTGGAAATTCTGTTCAGTAGTGC | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
4683 | 4961 | 4.515191 | GTGGAAATTCTGTTCAGTAGTGCA | 59.485 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
4684 | 4962 | 4.515191 | TGGAAATTCTGTTCAGTAGTGCAC | 59.485 | 41.667 | 9.40 | 9.40 | 0.00 | 4.57 |
4685 | 4963 | 4.757149 | GGAAATTCTGTTCAGTAGTGCACT | 59.243 | 41.667 | 25.12 | 25.12 | 38.32 | 4.40 |
4686 | 4964 | 5.239525 | GGAAATTCTGTTCAGTAGTGCACTT | 59.760 | 40.000 | 27.06 | 4.60 | 34.26 | 3.16 |
4687 | 4965 | 5.931441 | AATTCTGTTCAGTAGTGCACTTC | 57.069 | 39.130 | 27.06 | 20.59 | 34.26 | 3.01 |
4688 | 4966 | 4.672587 | TTCTGTTCAGTAGTGCACTTCT | 57.327 | 40.909 | 27.06 | 22.76 | 34.26 | 2.85 |
4689 | 4967 | 3.982475 | TCTGTTCAGTAGTGCACTTCTG | 58.018 | 45.455 | 35.08 | 35.08 | 41.10 | 3.02 |
4690 | 4968 | 2.478134 | CTGTTCAGTAGTGCACTTCTGC | 59.522 | 50.000 | 35.66 | 26.60 | 44.52 | 4.26 |
4703 | 4981 | 4.825400 | GCACTTCTGCAAACAATTGAAAC | 58.175 | 39.130 | 13.59 | 0.00 | 43.62 | 2.78 |
4704 | 4982 | 4.260334 | GCACTTCTGCAAACAATTGAAACC | 60.260 | 41.667 | 13.59 | 0.00 | 43.62 | 3.27 |
4705 | 4983 | 4.270808 | CACTTCTGCAAACAATTGAAACCC | 59.729 | 41.667 | 13.59 | 0.00 | 38.94 | 4.11 |
4706 | 4984 | 3.467374 | TCTGCAAACAATTGAAACCCC | 57.533 | 42.857 | 13.59 | 0.00 | 38.94 | 4.95 |
4707 | 4985 | 2.134346 | CTGCAAACAATTGAAACCCCG | 58.866 | 47.619 | 13.59 | 0.00 | 38.94 | 5.73 |
4708 | 4986 | 1.757118 | TGCAAACAATTGAAACCCCGA | 59.243 | 42.857 | 13.59 | 0.00 | 38.94 | 5.14 |
4709 | 4987 | 2.131972 | GCAAACAATTGAAACCCCGAC | 58.868 | 47.619 | 13.59 | 0.00 | 38.94 | 4.79 |
4710 | 4988 | 2.223947 | GCAAACAATTGAAACCCCGACT | 60.224 | 45.455 | 13.59 | 0.00 | 38.94 | 4.18 |
4711 | 4989 | 3.638484 | CAAACAATTGAAACCCCGACTC | 58.362 | 45.455 | 13.59 | 0.00 | 38.94 | 3.36 |
4712 | 4990 | 1.519408 | ACAATTGAAACCCCGACTCG | 58.481 | 50.000 | 13.59 | 0.00 | 0.00 | 4.18 |
4713 | 4991 | 1.202722 | ACAATTGAAACCCCGACTCGT | 60.203 | 47.619 | 13.59 | 0.00 | 0.00 | 4.18 |
4714 | 4992 | 2.037511 | ACAATTGAAACCCCGACTCGTA | 59.962 | 45.455 | 13.59 | 0.00 | 0.00 | 3.43 |
4715 | 4993 | 3.267483 | CAATTGAAACCCCGACTCGTAT | 58.733 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
4716 | 4994 | 2.373540 | TTGAAACCCCGACTCGTATG | 57.626 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
4717 | 4995 | 1.259609 | TGAAACCCCGACTCGTATGT | 58.740 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4718 | 4996 | 2.445427 | TGAAACCCCGACTCGTATGTA | 58.555 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
4719 | 4997 | 2.824936 | TGAAACCCCGACTCGTATGTAA | 59.175 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
4720 | 4998 | 3.448301 | TGAAACCCCGACTCGTATGTAAT | 59.552 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
4721 | 4999 | 4.644234 | TGAAACCCCGACTCGTATGTAATA | 59.356 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
4722 | 5000 | 5.126869 | TGAAACCCCGACTCGTATGTAATAA | 59.873 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4723 | 5001 | 5.596836 | AACCCCGACTCGTATGTAATAAA | 57.403 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
4724 | 5002 | 5.596836 | ACCCCGACTCGTATGTAATAAAA | 57.403 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
4725 | 5003 | 5.351458 | ACCCCGACTCGTATGTAATAAAAC | 58.649 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
4726 | 5004 | 5.105392 | ACCCCGACTCGTATGTAATAAAACA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4727 | 5005 | 5.461078 | CCCCGACTCGTATGTAATAAAACAG | 59.539 | 44.000 | 0.00 | 0.00 | 31.70 | 3.16 |
4728 | 5006 | 6.038356 | CCCGACTCGTATGTAATAAAACAGT | 58.962 | 40.000 | 0.00 | 0.00 | 31.70 | 3.55 |
4729 | 5007 | 6.197842 | CCCGACTCGTATGTAATAAAACAGTC | 59.802 | 42.308 | 0.00 | 0.00 | 31.70 | 3.51 |
4730 | 5008 | 6.748658 | CCGACTCGTATGTAATAAAACAGTCA | 59.251 | 38.462 | 0.00 | 0.00 | 31.70 | 3.41 |
4731 | 5009 | 7.274033 | CCGACTCGTATGTAATAAAACAGTCAA | 59.726 | 37.037 | 0.00 | 0.00 | 31.70 | 3.18 |
4732 | 5010 | 8.641155 | CGACTCGTATGTAATAAAACAGTCAAA | 58.359 | 33.333 | 0.00 | 0.00 | 31.70 | 2.69 |
4733 | 5011 | 9.953825 | GACTCGTATGTAATAAAACAGTCAAAG | 57.046 | 33.333 | 0.00 | 0.00 | 31.70 | 2.77 |
4734 | 5012 | 9.485206 | ACTCGTATGTAATAAAACAGTCAAAGT | 57.515 | 29.630 | 0.00 | 0.00 | 31.70 | 2.66 |
4735 | 5013 | 9.953825 | CTCGTATGTAATAAAACAGTCAAAGTC | 57.046 | 33.333 | 0.00 | 0.00 | 31.70 | 3.01 |
4736 | 5014 | 8.641155 | TCGTATGTAATAAAACAGTCAAAGTCG | 58.359 | 33.333 | 0.00 | 0.00 | 31.70 | 4.18 |
4737 | 5015 | 8.430063 | CGTATGTAATAAAACAGTCAAAGTCGT | 58.570 | 33.333 | 0.00 | 0.00 | 31.70 | 4.34 |
4738 | 5016 | 9.737025 | GTATGTAATAAAACAGTCAAAGTCGTC | 57.263 | 33.333 | 0.00 | 0.00 | 31.70 | 4.20 |
4739 | 5017 | 7.773864 | TGTAATAAAACAGTCAAAGTCGTCA | 57.226 | 32.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4740 | 5018 | 7.847487 | TGTAATAAAACAGTCAAAGTCGTCAG | 58.153 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
4741 | 5019 | 5.924475 | ATAAAACAGTCAAAGTCGTCAGG | 57.076 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
4742 | 5020 | 1.583054 | AACAGTCAAAGTCGTCAGGC | 58.417 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4743 | 5021 | 0.753262 | ACAGTCAAAGTCGTCAGGCT | 59.247 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
4744 | 5022 | 1.269831 | ACAGTCAAAGTCGTCAGGCTC | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
4745 | 5023 | 1.040646 | AGTCAAAGTCGTCAGGCTCA | 58.959 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4746 | 5024 | 1.140816 | GTCAAAGTCGTCAGGCTCAC | 58.859 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4747 | 5025 | 0.750249 | TCAAAGTCGTCAGGCTCACA | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4748 | 5026 | 1.143305 | CAAAGTCGTCAGGCTCACAG | 58.857 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4749 | 5027 | 0.601311 | AAAGTCGTCAGGCTCACAGC | 60.601 | 55.000 | 0.00 | 0.00 | 41.46 | 4.40 |
4750 | 5028 | 1.748329 | AAGTCGTCAGGCTCACAGCA | 61.748 | 55.000 | 0.00 | 0.00 | 44.75 | 4.41 |
4751 | 5029 | 1.300931 | GTCGTCAGGCTCACAGCAA | 60.301 | 57.895 | 0.00 | 0.00 | 44.75 | 3.91 |
4752 | 5030 | 1.005748 | TCGTCAGGCTCACAGCAAG | 60.006 | 57.895 | 0.00 | 0.00 | 44.75 | 4.01 |
4753 | 5031 | 2.675056 | CGTCAGGCTCACAGCAAGC | 61.675 | 63.158 | 0.00 | 0.00 | 44.75 | 4.01 |
4763 | 5041 | 3.583383 | CAGCAAGCCTGTACCTGC | 58.417 | 61.111 | 0.00 | 0.00 | 36.79 | 4.85 |
4764 | 5042 | 1.302752 | CAGCAAGCCTGTACCTGCA | 60.303 | 57.895 | 6.50 | 0.00 | 36.79 | 4.41 |
4765 | 5043 | 0.679002 | CAGCAAGCCTGTACCTGCAT | 60.679 | 55.000 | 6.50 | 0.00 | 36.79 | 3.96 |
4766 | 5044 | 0.038744 | AGCAAGCCTGTACCTGCATT | 59.961 | 50.000 | 6.50 | 0.00 | 0.00 | 3.56 |
4767 | 5045 | 0.171903 | GCAAGCCTGTACCTGCATTG | 59.828 | 55.000 | 6.50 | 8.29 | 0.00 | 2.82 |
4768 | 5046 | 0.171903 | CAAGCCTGTACCTGCATTGC | 59.828 | 55.000 | 0.46 | 0.46 | 0.00 | 3.56 |
4769 | 5047 | 0.251297 | AAGCCTGTACCTGCATTGCA | 60.251 | 50.000 | 11.50 | 11.50 | 36.92 | 4.08 |
4770 | 5048 | 0.962356 | AGCCTGTACCTGCATTGCAC | 60.962 | 55.000 | 7.38 | 0.00 | 33.79 | 4.57 |
4771 | 5049 | 1.243342 | GCCTGTACCTGCATTGCACA | 61.243 | 55.000 | 7.38 | 3.34 | 33.79 | 4.57 |
4772 | 5050 | 0.523072 | CCTGTACCTGCATTGCACAC | 59.477 | 55.000 | 7.38 | 6.77 | 33.79 | 3.82 |
4773 | 5051 | 1.237533 | CTGTACCTGCATTGCACACA | 58.762 | 50.000 | 7.38 | 10.84 | 33.79 | 3.72 |
4774 | 5052 | 0.950836 | TGTACCTGCATTGCACACAC | 59.049 | 50.000 | 7.38 | 6.07 | 33.79 | 3.82 |
4775 | 5053 | 0.110238 | GTACCTGCATTGCACACACG | 60.110 | 55.000 | 7.38 | 0.00 | 33.79 | 4.49 |
4776 | 5054 | 1.851021 | TACCTGCATTGCACACACGC | 61.851 | 55.000 | 7.38 | 0.00 | 33.79 | 5.34 |
4777 | 5055 | 2.332159 | CTGCATTGCACACACGCA | 59.668 | 55.556 | 7.38 | 0.00 | 41.03 | 5.24 |
4778 | 5056 | 1.081041 | CTGCATTGCACACACGCAT | 60.081 | 52.632 | 7.38 | 0.00 | 42.62 | 4.73 |
4779 | 5057 | 1.341369 | CTGCATTGCACACACGCATG | 61.341 | 55.000 | 7.38 | 0.00 | 42.62 | 4.06 |
4780 | 5058 | 2.722731 | GCATTGCACACACGCATGC | 61.723 | 57.895 | 7.91 | 7.91 | 42.62 | 4.06 |
4781 | 5059 | 1.081041 | CATTGCACACACGCATGCT | 60.081 | 52.632 | 17.13 | 0.00 | 42.62 | 3.79 |
4782 | 5060 | 1.081041 | ATTGCACACACGCATGCTG | 60.081 | 52.632 | 17.13 | 14.95 | 42.62 | 4.41 |
4783 | 5061 | 1.517210 | ATTGCACACACGCATGCTGA | 61.517 | 50.000 | 17.13 | 0.00 | 42.62 | 4.26 |
4784 | 5062 | 2.120355 | TTGCACACACGCATGCTGAG | 62.120 | 55.000 | 17.13 | 13.41 | 42.62 | 3.35 |
4785 | 5063 | 2.610694 | GCACACACGCATGCTGAGT | 61.611 | 57.895 | 17.13 | 14.02 | 38.84 | 3.41 |
4786 | 5064 | 1.291184 | GCACACACGCATGCTGAGTA | 61.291 | 55.000 | 17.13 | 0.00 | 38.84 | 2.59 |
4787 | 5065 | 1.147473 | CACACACGCATGCTGAGTAA | 58.853 | 50.000 | 17.13 | 0.00 | 0.00 | 2.24 |
4788 | 5066 | 1.530720 | CACACACGCATGCTGAGTAAA | 59.469 | 47.619 | 17.13 | 0.00 | 0.00 | 2.01 |
4789 | 5067 | 2.160219 | CACACACGCATGCTGAGTAAAT | 59.840 | 45.455 | 17.13 | 1.50 | 0.00 | 1.40 |
4790 | 5068 | 2.160219 | ACACACGCATGCTGAGTAAATG | 59.840 | 45.455 | 17.13 | 8.12 | 0.00 | 2.32 |
4791 | 5069 | 1.739466 | ACACGCATGCTGAGTAAATGG | 59.261 | 47.619 | 17.13 | 0.00 | 0.00 | 3.16 |
4792 | 5070 | 2.009051 | CACGCATGCTGAGTAAATGGA | 58.991 | 47.619 | 17.13 | 0.00 | 0.00 | 3.41 |
4793 | 5071 | 2.009774 | ACGCATGCTGAGTAAATGGAC | 58.990 | 47.619 | 17.13 | 0.00 | 0.00 | 4.02 |
4794 | 5072 | 2.009051 | CGCATGCTGAGTAAATGGACA | 58.991 | 47.619 | 17.13 | 0.00 | 0.00 | 4.02 |
4795 | 5073 | 2.419673 | CGCATGCTGAGTAAATGGACAA | 59.580 | 45.455 | 17.13 | 0.00 | 0.00 | 3.18 |
4796 | 5074 | 3.065786 | CGCATGCTGAGTAAATGGACAAT | 59.934 | 43.478 | 17.13 | 0.00 | 0.00 | 2.71 |
4797 | 5075 | 4.439153 | CGCATGCTGAGTAAATGGACAATT | 60.439 | 41.667 | 17.13 | 0.00 | 0.00 | 2.32 |
4798 | 5076 | 5.413499 | GCATGCTGAGTAAATGGACAATTT | 58.587 | 37.500 | 11.37 | 0.00 | 41.47 | 1.82 |
4799 | 5077 | 5.870978 | GCATGCTGAGTAAATGGACAATTTT | 59.129 | 36.000 | 11.37 | 0.00 | 39.29 | 1.82 |
4800 | 5078 | 6.369615 | GCATGCTGAGTAAATGGACAATTTTT | 59.630 | 34.615 | 11.37 | 0.00 | 39.29 | 1.94 |
4801 | 5079 | 7.412237 | GCATGCTGAGTAAATGGACAATTTTTC | 60.412 | 37.037 | 11.37 | 0.00 | 39.29 | 2.29 |
4802 | 5080 | 6.148948 | TGCTGAGTAAATGGACAATTTTTCG | 58.851 | 36.000 | 0.00 | 0.00 | 39.29 | 3.46 |
4803 | 5081 | 6.016693 | TGCTGAGTAAATGGACAATTTTTCGA | 60.017 | 34.615 | 0.00 | 0.00 | 39.29 | 3.71 |
4804 | 5082 | 7.029563 | GCTGAGTAAATGGACAATTTTTCGAT | 58.970 | 34.615 | 0.00 | 0.00 | 39.29 | 3.59 |
4805 | 5083 | 7.542130 | GCTGAGTAAATGGACAATTTTTCGATT | 59.458 | 33.333 | 0.00 | 0.00 | 39.29 | 3.34 |
4807 | 5085 | 9.834628 | TGAGTAAATGGACAATTTTTCGATTAC | 57.165 | 29.630 | 0.00 | 0.00 | 39.29 | 1.89 |
4815 | 5093 | 9.849166 | TGGACAATTTTTCGATTACTTTAATCC | 57.151 | 29.630 | 0.00 | 0.00 | 41.10 | 3.01 |
4816 | 5094 | 9.849166 | GGACAATTTTTCGATTACTTTAATCCA | 57.151 | 29.630 | 0.00 | 0.00 | 41.10 | 3.41 |
4837 | 5115 | 9.664332 | AATCCATAGATAAATCACTAGCATGAC | 57.336 | 33.333 | 0.00 | 0.00 | 30.42 | 3.06 |
4838 | 5116 | 8.193953 | TCCATAGATAAATCACTAGCATGACA | 57.806 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
4839 | 5117 | 8.819845 | TCCATAGATAAATCACTAGCATGACAT | 58.180 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
4840 | 5118 | 9.445878 | CCATAGATAAATCACTAGCATGACATT | 57.554 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
4843 | 5121 | 8.375608 | AGATAAATCACTAGCATGACATTGAC | 57.624 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
4844 | 5122 | 8.209584 | AGATAAATCACTAGCATGACATTGACT | 58.790 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
4845 | 5123 | 6.432607 | AAATCACTAGCATGACATTGACTG | 57.567 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
4846 | 5124 | 4.806640 | TCACTAGCATGACATTGACTGA | 57.193 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
4847 | 5125 | 5.151297 | TCACTAGCATGACATTGACTGAA | 57.849 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
4848 | 5126 | 5.737860 | TCACTAGCATGACATTGACTGAAT | 58.262 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
4849 | 5127 | 6.175471 | TCACTAGCATGACATTGACTGAATT | 58.825 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
4850 | 5128 | 7.330262 | TCACTAGCATGACATTGACTGAATTA | 58.670 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
4851 | 5129 | 7.823799 | TCACTAGCATGACATTGACTGAATTAA | 59.176 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4852 | 5130 | 7.907045 | CACTAGCATGACATTGACTGAATTAAC | 59.093 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
4853 | 5131 | 5.872635 | AGCATGACATTGACTGAATTAACG | 58.127 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
4854 | 5132 | 5.643348 | AGCATGACATTGACTGAATTAACGA | 59.357 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4855 | 5133 | 5.734498 | GCATGACATTGACTGAATTAACGAC | 59.266 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4856 | 5134 | 6.620518 | GCATGACATTGACTGAATTAACGACA | 60.621 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
4857 | 5135 | 7.466805 | CATGACATTGACTGAATTAACGACAT | 58.533 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
4858 | 5136 | 8.603181 | CATGACATTGACTGAATTAACGACATA | 58.397 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4859 | 5137 | 8.716646 | TGACATTGACTGAATTAACGACATAT | 57.283 | 30.769 | 0.00 | 0.00 | 0.00 | 1.78 |
4860 | 5138 | 8.817100 | TGACATTGACTGAATTAACGACATATC | 58.183 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
4879 | 5157 | 7.865707 | ACATATCGATTTTGATCTAACCAAGC | 58.134 | 34.615 | 1.71 | 0.00 | 0.00 | 4.01 |
4880 | 5158 | 7.498900 | ACATATCGATTTTGATCTAACCAAGCA | 59.501 | 33.333 | 1.71 | 0.00 | 0.00 | 3.91 |
4881 | 5159 | 6.949352 | ATCGATTTTGATCTAACCAAGCAT | 57.051 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
4882 | 5160 | 6.122850 | TCGATTTTGATCTAACCAAGCATG | 57.877 | 37.500 | 0.00 | 0.00 | 0.00 | 4.06 |
4883 | 5161 | 5.647658 | TCGATTTTGATCTAACCAAGCATGT | 59.352 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4884 | 5162 | 6.821160 | TCGATTTTGATCTAACCAAGCATGTA | 59.179 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
4885 | 5163 | 6.907212 | CGATTTTGATCTAACCAAGCATGTAC | 59.093 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
4886 | 5164 | 7.201644 | CGATTTTGATCTAACCAAGCATGTACT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
4887 | 5165 | 9.109393 | GATTTTGATCTAACCAAGCATGTACTA | 57.891 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4888 | 5166 | 7.843490 | TTTGATCTAACCAAGCATGTACTAC | 57.157 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4889 | 5167 | 5.588240 | TGATCTAACCAAGCATGTACTACG | 58.412 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4890 | 5168 | 3.777478 | TCTAACCAAGCATGTACTACGC | 58.223 | 45.455 | 0.00 | 0.00 | 0.00 | 4.42 |
4891 | 5169 | 2.465860 | AACCAAGCATGTACTACGCA | 57.534 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
4892 | 5170 | 2.465860 | ACCAAGCATGTACTACGCAA | 57.534 | 45.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4893 | 5171 | 2.773487 | ACCAAGCATGTACTACGCAAA | 58.227 | 42.857 | 0.00 | 0.00 | 0.00 | 3.68 |
4894 | 5172 | 2.482721 | ACCAAGCATGTACTACGCAAAC | 59.517 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
4895 | 5173 | 2.482336 | CCAAGCATGTACTACGCAAACA | 59.518 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
4896 | 5174 | 3.424829 | CCAAGCATGTACTACGCAAACAG | 60.425 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
4897 | 5175 | 3.040147 | AGCATGTACTACGCAAACAGT | 57.960 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
4898 | 5176 | 4.182693 | AGCATGTACTACGCAAACAGTA | 57.817 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
4899 | 5177 | 4.174009 | AGCATGTACTACGCAAACAGTAG | 58.826 | 43.478 | 0.00 | 2.25 | 45.11 | 2.57 |
4900 | 5178 | 4.082408 | AGCATGTACTACGCAAACAGTAGA | 60.082 | 41.667 | 9.96 | 0.00 | 43.00 | 2.59 |
4901 | 5179 | 4.031426 | GCATGTACTACGCAAACAGTAGAC | 59.969 | 45.833 | 9.96 | 5.19 | 43.00 | 2.59 |
4902 | 5180 | 4.834357 | TGTACTACGCAAACAGTAGACA | 57.166 | 40.909 | 9.96 | 7.25 | 43.00 | 3.41 |
4903 | 5181 | 5.381174 | TGTACTACGCAAACAGTAGACAT | 57.619 | 39.130 | 9.96 | 0.00 | 43.00 | 3.06 |
4904 | 5182 | 6.499234 | TGTACTACGCAAACAGTAGACATA | 57.501 | 37.500 | 9.96 | 0.00 | 43.00 | 2.29 |
4905 | 5183 | 7.092137 | TGTACTACGCAAACAGTAGACATAT | 57.908 | 36.000 | 9.96 | 0.00 | 43.00 | 1.78 |
4906 | 5184 | 7.191551 | TGTACTACGCAAACAGTAGACATATC | 58.808 | 38.462 | 9.96 | 0.00 | 43.00 | 1.63 |
4907 | 5185 | 6.452494 | ACTACGCAAACAGTAGACATATCT | 57.548 | 37.500 | 9.96 | 0.00 | 43.00 | 1.98 |
4908 | 5186 | 7.563888 | ACTACGCAAACAGTAGACATATCTA | 57.436 | 36.000 | 9.96 | 0.00 | 43.00 | 1.98 |
4927 | 5205 | 9.295214 | CATATCTACACATACTGCTAATACTGC | 57.705 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
213 | 217 | 1.890876 | TGTACATCAGCCAACACCAC | 58.109 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
265 | 269 | 3.990092 | TCTGTCACATGGTGTAGTTGAC | 58.010 | 45.455 | 0.00 | 0.29 | 34.79 | 3.18 |
266 | 270 | 4.890158 | ATCTGTCACATGGTGTAGTTGA | 57.110 | 40.909 | 0.00 | 0.00 | 34.79 | 3.18 |
561 | 566 | 2.253610 | ACCACGGAAGAGATGTTACCA | 58.746 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
581 | 586 | 2.677836 | ACTAGTCGAATACCGTGCGTTA | 59.322 | 45.455 | 0.00 | 0.00 | 39.75 | 3.18 |
605 | 611 | 5.362105 | TGCCGTCTGGGTTACTTTATATT | 57.638 | 39.130 | 0.00 | 0.00 | 38.44 | 1.28 |
615 | 621 | 1.613437 | CAAAAAGATGCCGTCTGGGTT | 59.387 | 47.619 | 0.00 | 0.00 | 37.23 | 4.11 |
621 | 627 | 3.692791 | GGTATCCAAAAAGATGCCGTC | 57.307 | 47.619 | 0.00 | 0.00 | 38.93 | 4.79 |
625 | 631 | 3.445096 | AGCTGTGGTATCCAAAAAGATGC | 59.555 | 43.478 | 0.00 | 0.00 | 34.18 | 3.91 |
628 | 634 | 5.499004 | ACTAGCTGTGGTATCCAAAAAGA | 57.501 | 39.130 | 0.00 | 0.00 | 34.18 | 2.52 |
629 | 635 | 6.575162 | AAACTAGCTGTGGTATCCAAAAAG | 57.425 | 37.500 | 0.00 | 0.00 | 34.18 | 2.27 |
634 | 645 | 5.423931 | TGATGTAAACTAGCTGTGGTATCCA | 59.576 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
671 | 682 | 3.423154 | GCCCTCGAACGTGCCAAG | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
730 | 741 | 0.693622 | TCCTCCCACGTAATTTGGCA | 59.306 | 50.000 | 0.00 | 0.00 | 32.13 | 4.92 |
732 | 743 | 4.632153 | CTCTATCCTCCCACGTAATTTGG | 58.368 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
759 | 778 | 7.120432 | GCCTAAGGATCCTTTGCTCAAATATAG | 59.880 | 40.741 | 31.45 | 17.10 | 37.47 | 1.31 |
843 | 862 | 1.372128 | CAAGCAAAAGTGGAGCCGC | 60.372 | 57.895 | 0.00 | 0.00 | 0.00 | 6.53 |
846 | 865 | 1.005748 | GGCCAAGCAAAAGTGGAGC | 60.006 | 57.895 | 0.00 | 0.00 | 37.03 | 4.70 |
867 | 892 | 2.523168 | TGGTGAGGTGTGAGCCGA | 60.523 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
941 | 967 | 0.110238 | CGACCAAAGCGACACAATGG | 60.110 | 55.000 | 0.00 | 0.00 | 37.19 | 3.16 |
1013 | 1039 | 2.478989 | CTGCTGCTGCTGCTTGTAT | 58.521 | 52.632 | 27.67 | 0.00 | 40.48 | 2.29 |
1066 | 1092 | 1.148048 | GATGAGGAAGGGGAGCTGC | 59.852 | 63.158 | 0.00 | 0.00 | 0.00 | 5.25 |
1087 | 1113 | 2.575532 | CTGGGTGCTGTTCTTGAAGAA | 58.424 | 47.619 | 3.02 | 3.02 | 0.00 | 2.52 |
1088 | 1114 | 1.202806 | CCTGGGTGCTGTTCTTGAAGA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
1089 | 1115 | 1.202806 | TCCTGGGTGCTGTTCTTGAAG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
1090 | 1116 | 0.843309 | TCCTGGGTGCTGTTCTTGAA | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1091 | 1117 | 0.108585 | GTCCTGGGTGCTGTTCTTGA | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1092 | 1118 | 0.179020 | TGTCCTGGGTGCTGTTCTTG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1093 | 1119 | 0.550914 | TTGTCCTGGGTGCTGTTCTT | 59.449 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1094 | 1120 | 0.109342 | CTTGTCCTGGGTGCTGTTCT | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1095 | 1121 | 0.108585 | TCTTGTCCTGGGTGCTGTTC | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1096 | 1122 | 0.179018 | GTCTTGTCCTGGGTGCTGTT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1097 | 1123 | 1.344953 | TGTCTTGTCCTGGGTGCTGT | 61.345 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1098 | 1124 | 0.604780 | CTGTCTTGTCCTGGGTGCTG | 60.605 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1099 | 1125 | 0.764369 | TCTGTCTTGTCCTGGGTGCT | 60.764 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1100 | 1126 | 0.108585 | TTCTGTCTTGTCCTGGGTGC | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1110 | 1136 | 3.108144 | CGCACAAACCTTTTCTGTCTTG | 58.892 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
1132 | 1158 | 6.091986 | GGAAGAACAGAAGAGTAAATCAGCAG | 59.908 | 42.308 | 0.00 | 0.00 | 0.00 | 4.24 |
1146 | 1172 | 6.122277 | ACAAATCAACAGAGGAAGAACAGAA | 58.878 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1228 | 1256 | 4.149598 | ACCGGCAGAGGTTAAAAAGAAAT | 58.850 | 39.130 | 0.00 | 0.00 | 43.00 | 2.17 |
1332 | 1364 | 2.645567 | CGACCCTCGATCCGGATG | 59.354 | 66.667 | 24.82 | 14.35 | 43.74 | 3.51 |
1443 | 1489 | 1.743772 | CGAATCCATCCTTCCGTTGCT | 60.744 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
1445 | 1491 | 2.024176 | ACGAATCCATCCTTCCGTTG | 57.976 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1455 | 1501 | 5.039920 | TCTCCATGAATCAACGAATCCAT | 57.960 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1456 | 1502 | 4.486125 | TCTCCATGAATCAACGAATCCA | 57.514 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1462 | 1509 | 5.052481 | TCTTAGCATCTCCATGAATCAACG | 58.948 | 41.667 | 0.00 | 0.00 | 30.57 | 4.10 |
1463 | 1510 | 7.507733 | AATCTTAGCATCTCCATGAATCAAC | 57.492 | 36.000 | 0.00 | 0.00 | 30.57 | 3.18 |
1661 | 1708 | 3.977244 | GTTGGGCACTTGGGCACG | 61.977 | 66.667 | 0.00 | 0.00 | 45.66 | 5.34 |
1667 | 1714 | 3.294493 | CCACCGGTTGGGCACTTG | 61.294 | 66.667 | 2.97 | 0.00 | 42.54 | 3.16 |
1675 | 1722 | 1.672356 | CAGAAGAGGCCACCGGTTG | 60.672 | 63.158 | 2.97 | 1.36 | 0.00 | 3.77 |
1680 | 1727 | 0.329596 | ATTGACCAGAAGAGGCCACC | 59.670 | 55.000 | 5.01 | 0.00 | 0.00 | 4.61 |
1770 | 1817 | 3.730662 | CGCATGCTACACGGCTAATTTTT | 60.731 | 43.478 | 17.13 | 0.00 | 0.00 | 1.94 |
1771 | 1818 | 2.223249 | CGCATGCTACACGGCTAATTTT | 60.223 | 45.455 | 17.13 | 0.00 | 0.00 | 1.82 |
1772 | 1819 | 1.330521 | CGCATGCTACACGGCTAATTT | 59.669 | 47.619 | 17.13 | 0.00 | 0.00 | 1.82 |
1773 | 1820 | 0.937304 | CGCATGCTACACGGCTAATT | 59.063 | 50.000 | 17.13 | 0.00 | 0.00 | 1.40 |
1774 | 1821 | 0.179084 | ACGCATGCTACACGGCTAAT | 60.179 | 50.000 | 17.13 | 0.00 | 0.00 | 1.73 |
1781 | 1828 | 2.789208 | TCTACGTTACGCATGCTACAC | 58.211 | 47.619 | 17.13 | 7.96 | 0.00 | 2.90 |
1798 | 1845 | 5.237344 | GCCTCGTAGTTAAGTCCGTTATCTA | 59.763 | 44.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1825 | 1872 | 2.478033 | CCCAACCGCGGCTTAATCC | 61.478 | 63.158 | 28.58 | 0.00 | 0.00 | 3.01 |
1836 | 1883 | 1.379527 | GAGTTAGCAATCCCCAACCG | 58.620 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1839 | 1886 | 0.742990 | CGCGAGTTAGCAATCCCCAA | 60.743 | 55.000 | 0.00 | 0.00 | 36.85 | 4.12 |
1840 | 1887 | 1.153449 | CGCGAGTTAGCAATCCCCA | 60.153 | 57.895 | 0.00 | 0.00 | 36.85 | 4.96 |
1841 | 1888 | 1.887707 | CCGCGAGTTAGCAATCCCC | 60.888 | 63.158 | 8.23 | 0.00 | 36.85 | 4.81 |
1842 | 1889 | 0.743345 | AACCGCGAGTTAGCAATCCC | 60.743 | 55.000 | 8.23 | 0.00 | 36.74 | 3.85 |
1843 | 1890 | 1.930567 | TAACCGCGAGTTAGCAATCC | 58.069 | 50.000 | 8.23 | 0.00 | 40.05 | 3.01 |
1870 | 1917 | 1.667830 | GTTGCTGCTACTCGTGCCA | 60.668 | 57.895 | 6.98 | 0.00 | 0.00 | 4.92 |
1871 | 1918 | 2.391389 | GGTTGCTGCTACTCGTGCC | 61.391 | 63.158 | 13.54 | 0.00 | 0.00 | 5.01 |
1872 | 1919 | 1.630244 | CTGGTTGCTGCTACTCGTGC | 61.630 | 60.000 | 13.54 | 0.00 | 0.00 | 5.34 |
1873 | 1920 | 1.630244 | GCTGGTTGCTGCTACTCGTG | 61.630 | 60.000 | 13.54 | 3.81 | 38.95 | 4.35 |
1930 | 1980 | 9.590088 | GCATCAAAAATGATTTCTGTTTCTTTC | 57.410 | 29.630 | 0.00 | 0.00 | 0.00 | 2.62 |
1987 | 2042 | 2.287970 | ACAAGTCACTCGTGCGTATTCA | 60.288 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2041 | 2096 | 3.631227 | CAGGATCTCTTTCAATTCAGGGC | 59.369 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
2235 | 2291 | 1.740025 | GCTCTGTCTTTTGATTCCCGG | 59.260 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
2236 | 2292 | 2.426522 | TGCTCTGTCTTTTGATTCCCG | 58.573 | 47.619 | 0.00 | 0.00 | 0.00 | 5.14 |
2368 | 2424 | 0.463474 | GGCTGCTCCTCTCATGTTCC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2401 | 2457 | 1.883638 | GCAACTCTGGGACATGCTGAA | 60.884 | 52.381 | 0.00 | 0.00 | 38.20 | 3.02 |
2411 | 2467 | 2.775911 | TCTGAAGATGCAACTCTGGG | 57.224 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2538 | 2594 | 9.363401 | TCTATATGAGCCTTTAGTAAAGCACTA | 57.637 | 33.333 | 15.95 | 4.28 | 38.80 | 2.74 |
2581 | 2637 | 2.417339 | TGCATAAGATCTACGGCGAC | 57.583 | 50.000 | 16.62 | 0.00 | 0.00 | 5.19 |
2648 | 2704 | 6.449830 | TCCATCATCCTCATTTCATCATCT | 57.550 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2721 | 2777 | 4.141981 | ACTCAGCATGTTCTCATAGGACAG | 60.142 | 45.833 | 0.00 | 0.00 | 37.40 | 3.51 |
2775 | 2831 | 5.068987 | CCATTTCATTATGACCCGGATTTGT | 59.931 | 40.000 | 0.73 | 0.00 | 0.00 | 2.83 |
3431 | 3487 | 3.423539 | AGCAACACATCCACACTACAT | 57.576 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
3461 | 3517 | 4.159321 | TGCTGAAATTGTCCAGTGAAAACA | 59.841 | 37.500 | 0.00 | 0.00 | 33.19 | 2.83 |
3615 | 3671 | 5.500234 | CTTCACCTTTGATGATCCAGGTAA | 58.500 | 41.667 | 11.82 | 0.00 | 37.56 | 2.85 |
3617 | 3673 | 3.308688 | CCTTCACCTTTGATGATCCAGGT | 60.309 | 47.826 | 7.43 | 7.43 | 40.50 | 4.00 |
3618 | 3674 | 3.054139 | TCCTTCACCTTTGATGATCCAGG | 60.054 | 47.826 | 6.29 | 6.29 | 0.00 | 4.45 |
3675 | 3731 | 1.203052 | CATGAAGCAAAATGGCGAGGT | 59.797 | 47.619 | 0.00 | 0.00 | 39.27 | 3.85 |
3755 | 3811 | 0.179062 | CTGTACCATGCTGGCTCTCC | 60.179 | 60.000 | 2.50 | 0.00 | 42.67 | 3.71 |
3869 | 3926 | 3.451141 | TTTTTCTTCCATTGCAACGCT | 57.549 | 38.095 | 0.00 | 0.00 | 0.00 | 5.07 |
3899 | 3956 | 9.780186 | GAGTCATGCTTACTAAATTAGGGTTAT | 57.220 | 33.333 | 4.92 | 0.00 | 0.00 | 1.89 |
3900 | 3957 | 8.764558 | TGAGTCATGCTTACTAAATTAGGGTTA | 58.235 | 33.333 | 4.92 | 0.00 | 0.00 | 2.85 |
3901 | 3958 | 7.630082 | TGAGTCATGCTTACTAAATTAGGGTT | 58.370 | 34.615 | 4.92 | 0.00 | 0.00 | 4.11 |
3910 | 3967 | 4.142447 | GGACGACTGAGTCATGCTTACTAA | 60.142 | 45.833 | 13.67 | 0.00 | 42.62 | 2.24 |
3927 | 3984 | 2.603776 | ACCTGTGAGGGGGACGAC | 60.604 | 66.667 | 0.00 | 0.00 | 40.58 | 4.34 |
3930 | 3988 | 2.283676 | TCGACCTGTGAGGGGGAC | 60.284 | 66.667 | 0.00 | 0.00 | 40.58 | 4.46 |
3955 | 4013 | 2.335011 | GGGCAGCCGTGTTGAAAC | 59.665 | 61.111 | 5.00 | 0.00 | 0.00 | 2.78 |
3968 | 4027 | 2.897271 | ACCAACAATATGAGTGGGCA | 57.103 | 45.000 | 2.57 | 0.00 | 33.07 | 5.36 |
3997 | 4056 | 2.487762 | TGCAATTAAAGAAGCGACAGGG | 59.512 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
4001 | 4060 | 4.260656 | CGTCATTGCAATTAAAGAAGCGAC | 59.739 | 41.667 | 9.83 | 9.63 | 0.00 | 5.19 |
4004 | 4063 | 5.153513 | TGTCGTCATTGCAATTAAAGAAGC | 58.846 | 37.500 | 9.83 | 4.13 | 0.00 | 3.86 |
4060 | 4123 | 8.197988 | AGCTTCTTAACTTTTACATATCGTGG | 57.802 | 34.615 | 0.00 | 0.00 | 0.00 | 4.94 |
4225 | 4323 | 5.521010 | AGCATGTGTGTTTCAAACATTTCTG | 59.479 | 36.000 | 6.17 | 4.17 | 39.01 | 3.02 |
4226 | 4324 | 5.663456 | AGCATGTGTGTTTCAAACATTTCT | 58.337 | 33.333 | 6.17 | 0.00 | 39.01 | 2.52 |
4230 | 4328 | 6.336566 | TGTAAAGCATGTGTGTTTCAAACAT | 58.663 | 32.000 | 6.17 | 0.00 | 42.36 | 2.71 |
4277 | 4375 | 3.016736 | CTCCCGTTGCCACAAAATAGAT | 58.983 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
4279 | 4377 | 1.135402 | GCTCCCGTTGCCACAAAATAG | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
4305 | 4403 | 2.512056 | TCCCTGGGTTTTGAAGTCTCAA | 59.488 | 45.455 | 13.56 | 0.00 | 39.87 | 3.02 |
4307 | 4405 | 2.372172 | TCTCCCTGGGTTTTGAAGTCTC | 59.628 | 50.000 | 13.56 | 0.00 | 0.00 | 3.36 |
4314 | 4414 | 2.656947 | TTGTCTCTCCCTGGGTTTTG | 57.343 | 50.000 | 13.56 | 2.22 | 0.00 | 2.44 |
4322 | 4422 | 2.373169 | TGCAACAGATTTGTCTCTCCCT | 59.627 | 45.455 | 0.00 | 0.00 | 36.23 | 4.20 |
4324 | 4424 | 4.005650 | TCATGCAACAGATTTGTCTCTCC | 58.994 | 43.478 | 0.00 | 0.00 | 36.23 | 3.71 |
4426 | 4704 | 7.449395 | AGTCTTCCAATCTCAATCAATTGTGAA | 59.551 | 33.333 | 5.13 | 0.00 | 41.69 | 3.18 |
4468 | 4746 | 8.061857 | GCCTTAAGTTTTATTGTTCTTTTGCAC | 58.938 | 33.333 | 0.97 | 0.00 | 0.00 | 4.57 |
4544 | 4822 | 6.457355 | TGGATGAATTTCCACTGTTTGAATG | 58.543 | 36.000 | 0.00 | 0.00 | 40.90 | 2.67 |
4609 | 4887 | 4.887071 | GGTTCACATGGAGGCACATAATTA | 59.113 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
4630 | 4908 | 7.402054 | TGGATGTATTTACTGAACAGAATGGT | 58.598 | 34.615 | 8.87 | 0.00 | 42.46 | 3.55 |
4631 | 4909 | 7.864108 | TGGATGTATTTACTGAACAGAATGG | 57.136 | 36.000 | 8.87 | 0.00 | 43.62 | 3.16 |
4632 | 4910 | 9.559958 | GTTTGGATGTATTTACTGAACAGAATG | 57.440 | 33.333 | 8.87 | 0.00 | 46.00 | 2.67 |
4633 | 4911 | 9.295825 | TGTTTGGATGTATTTACTGAACAGAAT | 57.704 | 29.630 | 8.87 | 2.06 | 0.00 | 2.40 |
4634 | 4912 | 8.684386 | TGTTTGGATGTATTTACTGAACAGAA | 57.316 | 30.769 | 8.87 | 0.00 | 0.00 | 3.02 |
4635 | 4913 | 7.936847 | ACTGTTTGGATGTATTTACTGAACAGA | 59.063 | 33.333 | 16.44 | 0.00 | 42.25 | 3.41 |
4636 | 4914 | 8.017373 | CACTGTTTGGATGTATTTACTGAACAG | 58.983 | 37.037 | 9.96 | 9.96 | 44.09 | 3.16 |
4637 | 4915 | 7.870826 | CACTGTTTGGATGTATTTACTGAACA | 58.129 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
4658 | 4936 | 5.334414 | GCACTACTGAACAGAATTTCCACTG | 60.334 | 44.000 | 8.87 | 0.00 | 39.65 | 3.66 |
4659 | 4937 | 4.757149 | GCACTACTGAACAGAATTTCCACT | 59.243 | 41.667 | 8.87 | 0.00 | 0.00 | 4.00 |
4660 | 4938 | 4.515191 | TGCACTACTGAACAGAATTTCCAC | 59.485 | 41.667 | 8.87 | 0.00 | 0.00 | 4.02 |
4661 | 4939 | 4.515191 | GTGCACTACTGAACAGAATTTCCA | 59.485 | 41.667 | 10.32 | 0.00 | 0.00 | 3.53 |
4662 | 4940 | 4.757149 | AGTGCACTACTGAACAGAATTTCC | 59.243 | 41.667 | 20.16 | 0.00 | 38.49 | 3.13 |
4663 | 4941 | 5.931441 | AGTGCACTACTGAACAGAATTTC | 57.069 | 39.130 | 20.16 | 0.00 | 38.49 | 2.17 |
4664 | 4942 | 6.017605 | CAGAAGTGCACTACTGAACAGAATTT | 60.018 | 38.462 | 22.01 | 0.00 | 40.26 | 1.82 |
4665 | 4943 | 5.468072 | CAGAAGTGCACTACTGAACAGAATT | 59.532 | 40.000 | 22.01 | 0.00 | 40.26 | 2.17 |
4666 | 4944 | 4.993584 | CAGAAGTGCACTACTGAACAGAAT | 59.006 | 41.667 | 22.01 | 0.00 | 40.26 | 2.40 |
4667 | 4945 | 4.371786 | CAGAAGTGCACTACTGAACAGAA | 58.628 | 43.478 | 22.01 | 0.00 | 40.26 | 3.02 |
4668 | 4946 | 3.982475 | CAGAAGTGCACTACTGAACAGA | 58.018 | 45.455 | 22.01 | 0.00 | 40.26 | 3.41 |
4682 | 4960 | 4.270808 | GGGTTTCAATTGTTTGCAGAAGTG | 59.729 | 41.667 | 5.13 | 0.00 | 32.61 | 3.16 |
4683 | 4961 | 4.441792 | GGGTTTCAATTGTTTGCAGAAGT | 58.558 | 39.130 | 5.13 | 0.00 | 32.61 | 3.01 |
4684 | 4962 | 3.809279 | GGGGTTTCAATTGTTTGCAGAAG | 59.191 | 43.478 | 5.13 | 0.00 | 32.61 | 2.85 |
4685 | 4963 | 3.739519 | CGGGGTTTCAATTGTTTGCAGAA | 60.740 | 43.478 | 5.13 | 0.00 | 32.61 | 3.02 |
4686 | 4964 | 2.223923 | CGGGGTTTCAATTGTTTGCAGA | 60.224 | 45.455 | 5.13 | 0.00 | 32.61 | 4.26 |
4687 | 4965 | 2.134346 | CGGGGTTTCAATTGTTTGCAG | 58.866 | 47.619 | 5.13 | 0.00 | 32.61 | 4.41 |
4688 | 4966 | 1.757118 | TCGGGGTTTCAATTGTTTGCA | 59.243 | 42.857 | 5.13 | 0.00 | 32.61 | 4.08 |
4689 | 4967 | 2.131972 | GTCGGGGTTTCAATTGTTTGC | 58.868 | 47.619 | 5.13 | 0.00 | 32.61 | 3.68 |
4690 | 4968 | 3.638484 | GAGTCGGGGTTTCAATTGTTTG | 58.362 | 45.455 | 5.13 | 0.00 | 0.00 | 2.93 |
4691 | 4969 | 2.292292 | CGAGTCGGGGTTTCAATTGTTT | 59.708 | 45.455 | 4.10 | 0.00 | 0.00 | 2.83 |
4692 | 4970 | 1.877443 | CGAGTCGGGGTTTCAATTGTT | 59.123 | 47.619 | 4.10 | 0.00 | 0.00 | 2.83 |
4693 | 4971 | 1.202722 | ACGAGTCGGGGTTTCAATTGT | 60.203 | 47.619 | 18.30 | 0.00 | 0.00 | 2.71 |
4694 | 4972 | 1.519408 | ACGAGTCGGGGTTTCAATTG | 58.481 | 50.000 | 18.30 | 0.00 | 0.00 | 2.32 |
4695 | 4973 | 3.267483 | CATACGAGTCGGGGTTTCAATT | 58.733 | 45.455 | 18.30 | 0.00 | 0.00 | 2.32 |
4696 | 4974 | 2.235402 | ACATACGAGTCGGGGTTTCAAT | 59.765 | 45.455 | 18.30 | 0.00 | 0.00 | 2.57 |
4697 | 4975 | 1.619827 | ACATACGAGTCGGGGTTTCAA | 59.380 | 47.619 | 18.30 | 0.00 | 0.00 | 2.69 |
4698 | 4976 | 1.259609 | ACATACGAGTCGGGGTTTCA | 58.740 | 50.000 | 18.30 | 0.00 | 0.00 | 2.69 |
4699 | 4977 | 3.508744 | TTACATACGAGTCGGGGTTTC | 57.491 | 47.619 | 18.30 | 0.00 | 0.00 | 2.78 |
4700 | 4978 | 5.596836 | TTATTACATACGAGTCGGGGTTT | 57.403 | 39.130 | 18.30 | 0.00 | 0.00 | 3.27 |
4701 | 4979 | 5.596836 | TTTATTACATACGAGTCGGGGTT | 57.403 | 39.130 | 18.30 | 0.00 | 0.00 | 4.11 |
4702 | 4980 | 5.105392 | TGTTTTATTACATACGAGTCGGGGT | 60.105 | 40.000 | 18.30 | 13.56 | 0.00 | 4.95 |
4703 | 4981 | 5.350633 | TGTTTTATTACATACGAGTCGGGG | 58.649 | 41.667 | 18.30 | 8.10 | 0.00 | 5.73 |
4704 | 4982 | 6.038356 | ACTGTTTTATTACATACGAGTCGGG | 58.962 | 40.000 | 18.30 | 8.47 | 0.00 | 5.14 |
4705 | 4983 | 6.748658 | TGACTGTTTTATTACATACGAGTCGG | 59.251 | 38.462 | 18.30 | 1.22 | 0.00 | 4.79 |
4706 | 4984 | 7.730067 | TGACTGTTTTATTACATACGAGTCG | 57.270 | 36.000 | 11.85 | 11.85 | 0.00 | 4.18 |
4707 | 4985 | 9.953825 | CTTTGACTGTTTTATTACATACGAGTC | 57.046 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
4708 | 4986 | 9.485206 | ACTTTGACTGTTTTATTACATACGAGT | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 4.18 |
4709 | 4987 | 9.953825 | GACTTTGACTGTTTTATTACATACGAG | 57.046 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
4710 | 4988 | 8.641155 | CGACTTTGACTGTTTTATTACATACGA | 58.359 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
4711 | 4989 | 8.430063 | ACGACTTTGACTGTTTTATTACATACG | 58.570 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
4712 | 4990 | 9.737025 | GACGACTTTGACTGTTTTATTACATAC | 57.263 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
4713 | 4991 | 9.478768 | TGACGACTTTGACTGTTTTATTACATA | 57.521 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
4714 | 4992 | 8.373048 | TGACGACTTTGACTGTTTTATTACAT | 57.627 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
4715 | 4993 | 7.042321 | CCTGACGACTTTGACTGTTTTATTACA | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
4716 | 4994 | 7.288672 | CCTGACGACTTTGACTGTTTTATTAC | 58.711 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
4717 | 4995 | 6.073440 | GCCTGACGACTTTGACTGTTTTATTA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
4718 | 4996 | 5.277828 | GCCTGACGACTTTGACTGTTTTATT | 60.278 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4719 | 4997 | 4.213482 | GCCTGACGACTTTGACTGTTTTAT | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
4720 | 4998 | 3.558418 | GCCTGACGACTTTGACTGTTTTA | 59.442 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
4721 | 4999 | 2.354821 | GCCTGACGACTTTGACTGTTTT | 59.645 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
4722 | 5000 | 1.940613 | GCCTGACGACTTTGACTGTTT | 59.059 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
4723 | 5001 | 1.139058 | AGCCTGACGACTTTGACTGTT | 59.861 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
4724 | 5002 | 0.753262 | AGCCTGACGACTTTGACTGT | 59.247 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4725 | 5003 | 1.269778 | TGAGCCTGACGACTTTGACTG | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4726 | 5004 | 1.040646 | TGAGCCTGACGACTTTGACT | 58.959 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4727 | 5005 | 1.140816 | GTGAGCCTGACGACTTTGAC | 58.859 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4728 | 5006 | 0.750249 | TGTGAGCCTGACGACTTTGA | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4729 | 5007 | 1.143305 | CTGTGAGCCTGACGACTTTG | 58.857 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
4730 | 5008 | 0.601311 | GCTGTGAGCCTGACGACTTT | 60.601 | 55.000 | 0.00 | 0.00 | 34.48 | 2.66 |
4731 | 5009 | 1.005630 | GCTGTGAGCCTGACGACTT | 60.006 | 57.895 | 0.00 | 0.00 | 34.48 | 3.01 |
4732 | 5010 | 1.748329 | TTGCTGTGAGCCTGACGACT | 61.748 | 55.000 | 0.00 | 0.00 | 41.51 | 4.18 |
4733 | 5011 | 1.287730 | CTTGCTGTGAGCCTGACGAC | 61.288 | 60.000 | 0.00 | 0.00 | 41.51 | 4.34 |
4734 | 5012 | 1.005748 | CTTGCTGTGAGCCTGACGA | 60.006 | 57.895 | 0.00 | 0.00 | 41.51 | 4.20 |
4735 | 5013 | 2.675056 | GCTTGCTGTGAGCCTGACG | 61.675 | 63.158 | 0.00 | 0.00 | 41.51 | 4.35 |
4736 | 5014 | 3.261933 | GCTTGCTGTGAGCCTGAC | 58.738 | 61.111 | 0.00 | 0.00 | 41.51 | 3.51 |
4741 | 5019 | 1.301677 | GGTACAGGCTTGCTGTGAGC | 61.302 | 60.000 | 0.00 | 0.00 | 42.82 | 4.26 |
4742 | 5020 | 0.322975 | AGGTACAGGCTTGCTGTGAG | 59.677 | 55.000 | 0.00 | 0.00 | 36.37 | 3.51 |
4743 | 5021 | 0.035317 | CAGGTACAGGCTTGCTGTGA | 59.965 | 55.000 | 0.00 | 0.00 | 36.37 | 3.58 |
4744 | 5022 | 1.580845 | GCAGGTACAGGCTTGCTGTG | 61.581 | 60.000 | 0.00 | 0.00 | 38.27 | 3.66 |
4745 | 5023 | 1.302832 | GCAGGTACAGGCTTGCTGT | 60.303 | 57.895 | 0.00 | 0.00 | 38.27 | 4.40 |
4746 | 5024 | 0.679002 | ATGCAGGTACAGGCTTGCTG | 60.679 | 55.000 | 9.32 | 0.00 | 41.29 | 4.41 |
4747 | 5025 | 0.038744 | AATGCAGGTACAGGCTTGCT | 59.961 | 50.000 | 9.32 | 0.00 | 41.29 | 3.91 |
4748 | 5026 | 0.171903 | CAATGCAGGTACAGGCTTGC | 59.828 | 55.000 | 9.08 | 1.19 | 41.13 | 4.01 |
4749 | 5027 | 0.171903 | GCAATGCAGGTACAGGCTTG | 59.828 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
4750 | 5028 | 0.251297 | TGCAATGCAGGTACAGGCTT | 60.251 | 50.000 | 2.72 | 0.93 | 33.32 | 4.35 |
4751 | 5029 | 0.962356 | GTGCAATGCAGGTACAGGCT | 60.962 | 55.000 | 8.73 | 0.00 | 40.08 | 4.58 |
4752 | 5030 | 1.243342 | TGTGCAATGCAGGTACAGGC | 61.243 | 55.000 | 8.73 | 0.00 | 40.08 | 4.85 |
4753 | 5031 | 0.523072 | GTGTGCAATGCAGGTACAGG | 59.477 | 55.000 | 8.73 | 0.00 | 40.08 | 4.00 |
4754 | 5032 | 1.069022 | GTGTGTGCAATGCAGGTACAG | 60.069 | 52.381 | 8.73 | 0.00 | 40.08 | 2.74 |
4755 | 5033 | 0.950836 | GTGTGTGCAATGCAGGTACA | 59.049 | 50.000 | 8.73 | 11.80 | 40.08 | 2.90 |
4756 | 5034 | 0.110238 | CGTGTGTGCAATGCAGGTAC | 60.110 | 55.000 | 8.73 | 9.15 | 40.08 | 3.34 |
4757 | 5035 | 1.851021 | GCGTGTGTGCAATGCAGGTA | 61.851 | 55.000 | 8.73 | 0.00 | 40.08 | 3.08 |
4758 | 5036 | 3.033184 | CGTGTGTGCAATGCAGGT | 58.967 | 55.556 | 8.73 | 0.00 | 40.08 | 4.00 |
4759 | 5037 | 2.429571 | GCGTGTGTGCAATGCAGG | 60.430 | 61.111 | 8.73 | 0.00 | 40.08 | 4.85 |
4760 | 5038 | 2.332159 | TGCGTGTGTGCAATGCAG | 59.668 | 55.556 | 8.73 | 0.00 | 43.02 | 4.41 |
4767 | 5045 | 1.291184 | TACTCAGCATGCGTGTGTGC | 61.291 | 55.000 | 23.22 | 0.00 | 33.43 | 4.57 |
4768 | 5046 | 1.147473 | TTACTCAGCATGCGTGTGTG | 58.853 | 50.000 | 23.22 | 15.95 | 33.43 | 3.82 |
4769 | 5047 | 1.877637 | TTTACTCAGCATGCGTGTGT | 58.122 | 45.000 | 13.01 | 18.02 | 33.43 | 3.72 |
4770 | 5048 | 2.476686 | CCATTTACTCAGCATGCGTGTG | 60.477 | 50.000 | 13.01 | 13.56 | 33.43 | 3.82 |
4771 | 5049 | 1.739466 | CCATTTACTCAGCATGCGTGT | 59.261 | 47.619 | 13.01 | 15.53 | 33.43 | 4.49 |
4772 | 5050 | 2.009051 | TCCATTTACTCAGCATGCGTG | 58.991 | 47.619 | 13.01 | 11.17 | 33.43 | 5.34 |
4773 | 5051 | 2.009774 | GTCCATTTACTCAGCATGCGT | 58.990 | 47.619 | 13.01 | 7.01 | 37.94 | 5.24 |
4774 | 5052 | 2.009051 | TGTCCATTTACTCAGCATGCG | 58.991 | 47.619 | 13.01 | 7.64 | 34.76 | 4.73 |
4775 | 5053 | 4.644103 | ATTGTCCATTTACTCAGCATGC | 57.356 | 40.909 | 10.51 | 10.51 | 34.76 | 4.06 |
4776 | 5054 | 7.201376 | CGAAAAATTGTCCATTTACTCAGCATG | 60.201 | 37.037 | 0.00 | 0.00 | 33.60 | 4.06 |
4777 | 5055 | 6.808212 | CGAAAAATTGTCCATTTACTCAGCAT | 59.192 | 34.615 | 0.00 | 0.00 | 33.60 | 3.79 |
4778 | 5056 | 6.016693 | TCGAAAAATTGTCCATTTACTCAGCA | 60.017 | 34.615 | 0.00 | 0.00 | 33.60 | 4.41 |
4779 | 5057 | 6.378582 | TCGAAAAATTGTCCATTTACTCAGC | 58.621 | 36.000 | 0.00 | 0.00 | 33.60 | 4.26 |
4780 | 5058 | 8.970691 | AATCGAAAAATTGTCCATTTACTCAG | 57.029 | 30.769 | 0.00 | 0.00 | 33.60 | 3.35 |
4781 | 5059 | 9.834628 | GTAATCGAAAAATTGTCCATTTACTCA | 57.165 | 29.630 | 0.00 | 0.00 | 33.60 | 3.41 |
4789 | 5067 | 9.849166 | GGATTAAAGTAATCGAAAAATTGTCCA | 57.151 | 29.630 | 0.00 | 0.00 | 44.24 | 4.02 |
4790 | 5068 | 9.849166 | TGGATTAAAGTAATCGAAAAATTGTCC | 57.151 | 29.630 | 0.00 | 0.00 | 44.24 | 4.02 |
4811 | 5089 | 9.664332 | GTCATGCTAGTGATTTATCTATGGATT | 57.336 | 33.333 | 0.00 | 0.00 | 33.71 | 3.01 |
4812 | 5090 | 8.819845 | TGTCATGCTAGTGATTTATCTATGGAT | 58.180 | 33.333 | 0.00 | 0.00 | 36.07 | 3.41 |
4813 | 5091 | 8.193953 | TGTCATGCTAGTGATTTATCTATGGA | 57.806 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
4814 | 5092 | 9.445878 | AATGTCATGCTAGTGATTTATCTATGG | 57.554 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
4817 | 5095 | 9.481340 | GTCAATGTCATGCTAGTGATTTATCTA | 57.519 | 33.333 | 3.23 | 0.00 | 0.00 | 1.98 |
4818 | 5096 | 8.209584 | AGTCAATGTCATGCTAGTGATTTATCT | 58.790 | 33.333 | 3.23 | 0.00 | 0.00 | 1.98 |
4819 | 5097 | 8.281194 | CAGTCAATGTCATGCTAGTGATTTATC | 58.719 | 37.037 | 3.23 | 0.00 | 0.00 | 1.75 |
4820 | 5098 | 7.989170 | TCAGTCAATGTCATGCTAGTGATTTAT | 59.011 | 33.333 | 3.23 | 0.00 | 0.00 | 1.40 |
4821 | 5099 | 7.330262 | TCAGTCAATGTCATGCTAGTGATTTA | 58.670 | 34.615 | 3.23 | 0.00 | 0.00 | 1.40 |
4822 | 5100 | 6.175471 | TCAGTCAATGTCATGCTAGTGATTT | 58.825 | 36.000 | 3.23 | 0.00 | 0.00 | 2.17 |
4823 | 5101 | 5.737860 | TCAGTCAATGTCATGCTAGTGATT | 58.262 | 37.500 | 3.23 | 0.00 | 0.00 | 2.57 |
4824 | 5102 | 5.349061 | TCAGTCAATGTCATGCTAGTGAT | 57.651 | 39.130 | 3.23 | 0.00 | 0.00 | 3.06 |
4825 | 5103 | 4.806640 | TCAGTCAATGTCATGCTAGTGA | 57.193 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
4826 | 5104 | 6.432607 | AATTCAGTCAATGTCATGCTAGTG | 57.567 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
4827 | 5105 | 7.201556 | CGTTAATTCAGTCAATGTCATGCTAGT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
4828 | 5106 | 7.010460 | TCGTTAATTCAGTCAATGTCATGCTAG | 59.990 | 37.037 | 0.00 | 0.00 | 0.00 | 3.42 |
4829 | 5107 | 6.816140 | TCGTTAATTCAGTCAATGTCATGCTA | 59.184 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
4830 | 5108 | 5.643348 | TCGTTAATTCAGTCAATGTCATGCT | 59.357 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4831 | 5109 | 5.734498 | GTCGTTAATTCAGTCAATGTCATGC | 59.266 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
4832 | 5110 | 6.830736 | TGTCGTTAATTCAGTCAATGTCATG | 58.169 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4833 | 5111 | 7.615582 | ATGTCGTTAATTCAGTCAATGTCAT | 57.384 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4834 | 5112 | 8.716646 | ATATGTCGTTAATTCAGTCAATGTCA | 57.283 | 30.769 | 0.00 | 0.00 | 0.00 | 3.58 |
4835 | 5113 | 7.998767 | CGATATGTCGTTAATTCAGTCAATGTC | 59.001 | 37.037 | 3.37 | 0.00 | 42.78 | 3.06 |
4836 | 5114 | 7.841486 | CGATATGTCGTTAATTCAGTCAATGT | 58.159 | 34.615 | 3.37 | 0.00 | 42.78 | 2.71 |
4853 | 5131 | 8.012241 | GCTTGGTTAGATCAAAATCGATATGTC | 58.988 | 37.037 | 0.00 | 2.63 | 36.97 | 3.06 |
4854 | 5132 | 7.498900 | TGCTTGGTTAGATCAAAATCGATATGT | 59.501 | 33.333 | 0.00 | 0.00 | 36.97 | 2.29 |
4855 | 5133 | 7.864686 | TGCTTGGTTAGATCAAAATCGATATG | 58.135 | 34.615 | 0.00 | 1.13 | 36.97 | 1.78 |
4856 | 5134 | 8.509690 | CATGCTTGGTTAGATCAAAATCGATAT | 58.490 | 33.333 | 0.00 | 0.00 | 36.97 | 1.63 |
4857 | 5135 | 7.498900 | ACATGCTTGGTTAGATCAAAATCGATA | 59.501 | 33.333 | 0.00 | 0.00 | 36.97 | 2.92 |
4858 | 5136 | 6.319658 | ACATGCTTGGTTAGATCAAAATCGAT | 59.680 | 34.615 | 4.44 | 0.00 | 36.97 | 3.59 |
4859 | 5137 | 5.647658 | ACATGCTTGGTTAGATCAAAATCGA | 59.352 | 36.000 | 4.44 | 0.00 | 36.97 | 3.59 |
4860 | 5138 | 5.883661 | ACATGCTTGGTTAGATCAAAATCG | 58.116 | 37.500 | 4.44 | 0.00 | 36.97 | 3.34 |
4861 | 5139 | 7.989826 | AGTACATGCTTGGTTAGATCAAAATC | 58.010 | 34.615 | 4.44 | 0.00 | 0.00 | 2.17 |
4862 | 5140 | 7.944729 | AGTACATGCTTGGTTAGATCAAAAT | 57.055 | 32.000 | 4.44 | 0.00 | 0.00 | 1.82 |
4863 | 5141 | 7.064134 | CGTAGTACATGCTTGGTTAGATCAAAA | 59.936 | 37.037 | 4.44 | 0.00 | 0.00 | 2.44 |
4864 | 5142 | 6.533723 | CGTAGTACATGCTTGGTTAGATCAAA | 59.466 | 38.462 | 4.44 | 0.00 | 0.00 | 2.69 |
4865 | 5143 | 6.040247 | CGTAGTACATGCTTGGTTAGATCAA | 58.960 | 40.000 | 4.44 | 0.00 | 0.00 | 2.57 |
4866 | 5144 | 5.588240 | CGTAGTACATGCTTGGTTAGATCA | 58.412 | 41.667 | 4.44 | 0.00 | 0.00 | 2.92 |
4867 | 5145 | 4.444720 | GCGTAGTACATGCTTGGTTAGATC | 59.555 | 45.833 | 4.44 | 0.00 | 36.15 | 2.75 |
4868 | 5146 | 4.142026 | TGCGTAGTACATGCTTGGTTAGAT | 60.142 | 41.667 | 4.44 | 0.00 | 40.09 | 1.98 |
4869 | 5147 | 3.193903 | TGCGTAGTACATGCTTGGTTAGA | 59.806 | 43.478 | 4.44 | 0.00 | 40.09 | 2.10 |
4870 | 5148 | 3.517602 | TGCGTAGTACATGCTTGGTTAG | 58.482 | 45.455 | 4.44 | 0.00 | 40.09 | 2.34 |
4871 | 5149 | 3.596310 | TGCGTAGTACATGCTTGGTTA | 57.404 | 42.857 | 4.44 | 0.00 | 40.09 | 2.85 |
4872 | 5150 | 2.465860 | TGCGTAGTACATGCTTGGTT | 57.534 | 45.000 | 4.44 | 0.00 | 40.09 | 3.67 |
4873 | 5151 | 2.465860 | TTGCGTAGTACATGCTTGGT | 57.534 | 45.000 | 4.44 | 0.00 | 40.09 | 3.67 |
4874 | 5152 | 2.482336 | TGTTTGCGTAGTACATGCTTGG | 59.518 | 45.455 | 4.44 | 0.00 | 40.09 | 3.61 |
4875 | 5153 | 3.186409 | ACTGTTTGCGTAGTACATGCTTG | 59.814 | 43.478 | 0.38 | 0.00 | 40.09 | 4.01 |
4876 | 5154 | 3.399330 | ACTGTTTGCGTAGTACATGCTT | 58.601 | 40.909 | 0.38 | 0.00 | 40.09 | 3.91 |
4877 | 5155 | 3.040147 | ACTGTTTGCGTAGTACATGCT | 57.960 | 42.857 | 0.38 | 0.00 | 40.09 | 3.79 |
4878 | 5156 | 4.031426 | GTCTACTGTTTGCGTAGTACATGC | 59.969 | 45.833 | 0.38 | 0.00 | 39.82 | 4.06 |
4879 | 5157 | 5.158494 | TGTCTACTGTTTGCGTAGTACATG | 58.842 | 41.667 | 0.38 | 0.00 | 36.57 | 3.21 |
4880 | 5158 | 5.381174 | TGTCTACTGTTTGCGTAGTACAT | 57.619 | 39.130 | 0.38 | 0.00 | 36.57 | 2.29 |
4881 | 5159 | 4.834357 | TGTCTACTGTTTGCGTAGTACA | 57.166 | 40.909 | 0.38 | 0.00 | 36.57 | 2.90 |
4882 | 5160 | 7.416022 | AGATATGTCTACTGTTTGCGTAGTAC | 58.584 | 38.462 | 0.00 | 0.00 | 36.57 | 2.73 |
4883 | 5161 | 7.563888 | AGATATGTCTACTGTTTGCGTAGTA | 57.436 | 36.000 | 0.00 | 0.00 | 36.57 | 1.82 |
4884 | 5162 | 6.452494 | AGATATGTCTACTGTTTGCGTAGT | 57.548 | 37.500 | 0.00 | 0.00 | 36.57 | 2.73 |
4892 | 5170 | 8.353684 | GCAGTATGTGTAGATATGTCTACTGTT | 58.646 | 37.037 | 24.68 | 14.16 | 45.92 | 3.16 |
4893 | 5171 | 7.721842 | AGCAGTATGTGTAGATATGTCTACTGT | 59.278 | 37.037 | 24.68 | 15.20 | 45.92 | 3.55 |
4894 | 5172 | 8.105097 | AGCAGTATGTGTAGATATGTCTACTG | 57.895 | 38.462 | 24.68 | 17.94 | 45.92 | 2.74 |
4895 | 5173 | 9.794719 | TTAGCAGTATGTGTAGATATGTCTACT | 57.205 | 33.333 | 24.68 | 11.60 | 45.92 | 2.57 |
4901 | 5179 | 9.295214 | GCAGTATTAGCAGTATGTGTAGATATG | 57.705 | 37.037 | 0.00 | 0.00 | 39.31 | 1.78 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.