Multiple sequence alignment - TraesCS1A01G076900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G076900 chr1A 100.000 4928 0 0 1 4928 59612363 59617290 0.000000e+00 9101.0
1 TraesCS1A01G076900 chr1B 93.895 3227 124 32 654 3855 98166387 98169565 0.000000e+00 4800.0
2 TraesCS1A01G076900 chr1B 92.928 608 38 4 1 603 272476891 272476284 0.000000e+00 880.0
3 TraesCS1A01G076900 chr1B 90.055 181 10 5 2998 3178 243757721 243757893 1.380000e-55 228.0
4 TraesCS1A01G076900 chr1D 97.491 1953 45 4 1906 3855 61485263 61487214 0.000000e+00 3332.0
5 TraesCS1A01G076900 chr1D 88.442 969 48 24 599 1532 61484320 61485259 0.000000e+00 1110.0
6 TraesCS1A01G076900 chr1D 88.514 148 17 0 4779 4926 361301182 361301035 3.920000e-41 180.0
7 TraesCS1A01G076900 chr7A 98.353 607 8 2 1 605 576104441 576105047 0.000000e+00 1064.0
8 TraesCS1A01G076900 chr7A 80.672 119 22 1 4062 4180 29648254 29648371 1.890000e-14 91.6
9 TraesCS1A01G076900 chr5A 98.350 606 8 2 1 604 255616371 255615766 0.000000e+00 1062.0
10 TraesCS1A01G076900 chr5A 97.333 600 12 3 1 596 476495591 476496190 0.000000e+00 1016.0
11 TraesCS1A01G076900 chr5A 88.667 150 17 0 4779 4928 437928365 437928514 3.030000e-42 183.0
12 TraesCS1A01G076900 chr3D 88.494 478 47 6 97 571 335225660 335226132 5.530000e-159 571.0
13 TraesCS1A01G076900 chr7D 88.075 478 49 6 97 571 103635637 103635165 1.200000e-155 560.0
14 TraesCS1A01G076900 chr7D 89.116 147 16 0 4782 4928 21119232 21119086 3.030000e-42 183.0
15 TraesCS1A01G076900 chr2B 87.238 478 52 7 97 571 59638540 59639011 2.020000e-148 536.0
16 TraesCS1A01G076900 chr2B 87.238 478 52 7 97 571 97384671 97385142 2.020000e-148 536.0
17 TraesCS1A01G076900 chr2B 92.683 287 13 1 4352 4630 227843084 227842798 1.650000e-109 407.0
18 TraesCS1A01G076900 chr2B 91.946 149 12 0 4779 4927 310941270 310941122 5.000000e-50 209.0
19 TraesCS1A01G076900 chr2B 92.308 78 4 2 4281 4356 227843254 227843177 5.220000e-20 110.0
20 TraesCS1A01G076900 chr3B 87.056 479 55 6 97 571 768727953 768727478 7.260000e-148 534.0
21 TraesCS1A01G076900 chr2A 82.895 532 56 26 3850 4356 180342523 180342002 3.500000e-121 446.0
22 TraesCS1A01G076900 chr2A 94.624 279 15 0 4352 4630 180341909 180341631 2.720000e-117 433.0
23 TraesCS1A01G076900 chr2A 90.000 180 18 0 2998 3177 138874916 138875095 2.970000e-57 233.0
24 TraesCS1A01G076900 chr2D 93.907 279 17 0 4352 4630 169974044 169974322 5.900000e-114 422.0
25 TraesCS1A01G076900 chr2D 92.520 254 14 2 3932 4180 169973405 169973658 4.690000e-95 359.0
26 TraesCS1A01G076900 chr7B 91.713 181 15 0 2998 3178 312427260 312427440 8.190000e-63 252.0
27 TraesCS1A01G076900 chr7B 90.608 181 13 4 2998 3178 379919855 379920031 2.290000e-58 237.0
28 TraesCS1A01G076900 chr6A 91.713 181 14 1 2998 3178 222568611 222568790 2.950000e-62 250.0
29 TraesCS1A01G076900 chr4D 91.667 180 15 0 2998 3177 286960775 286960954 2.950000e-62 250.0
30 TraesCS1A01G076900 chr4D 88.667 150 17 0 4779 4928 15324066 15324215 3.030000e-42 183.0
31 TraesCS1A01G076900 chr4B 90.055 181 14 4 2998 3178 207149136 207149312 1.070000e-56 231.0
32 TraesCS1A01G076900 chr3A 82.375 261 24 9 1858 2118 248214235 248213997 1.800000e-49 207.0
33 TraesCS1A01G076900 chr3A 89.474 152 16 0 4777 4928 734632308 734632157 5.030000e-45 193.0
34 TraesCS1A01G076900 chr5B 90.000 150 15 0 4779 4928 657159663 657159812 1.400000e-45 195.0
35 TraesCS1A01G076900 chr6D 89.333 150 16 0 4779 4928 293736434 293736285 6.510000e-44 189.0
36 TraesCS1A01G076900 chr5D 88.158 152 16 2 4778 4928 336454630 336454480 3.920000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G076900 chr1A 59612363 59617290 4927 False 9101.0 9101 100.0000 1 4928 1 chr1A.!!$F1 4927
1 TraesCS1A01G076900 chr1B 98166387 98169565 3178 False 4800.0 4800 93.8950 654 3855 1 chr1B.!!$F1 3201
2 TraesCS1A01G076900 chr1B 272476284 272476891 607 True 880.0 880 92.9280 1 603 1 chr1B.!!$R1 602
3 TraesCS1A01G076900 chr1D 61484320 61487214 2894 False 2221.0 3332 92.9665 599 3855 2 chr1D.!!$F1 3256
4 TraesCS1A01G076900 chr7A 576104441 576105047 606 False 1064.0 1064 98.3530 1 605 1 chr7A.!!$F2 604
5 TraesCS1A01G076900 chr5A 255615766 255616371 605 True 1062.0 1062 98.3500 1 604 1 chr5A.!!$R1 603
6 TraesCS1A01G076900 chr5A 476495591 476496190 599 False 1016.0 1016 97.3330 1 596 1 chr5A.!!$F2 595
7 TraesCS1A01G076900 chr2A 180341631 180342523 892 True 439.5 446 88.7595 3850 4630 2 chr2A.!!$R1 780
8 TraesCS1A01G076900 chr2D 169973405 169974322 917 False 390.5 422 93.2135 3932 4630 2 chr2D.!!$F1 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 892 0.471591 TCCACTTTTGCTTGGCCCAT 60.472 50.0 0.0 0.00 32.37 4.00 F
1087 1113 0.043940 AGCTCCCCTTCCTCATCTGT 59.956 55.0 0.0 0.00 0.00 3.41 F
1110 1136 0.108585 TCAAGAACAGCACCCAGGAC 59.891 55.0 0.0 0.00 0.00 3.85 F
1842 1889 0.179067 TAGGATTAAGCCGCGGTTGG 60.179 55.0 28.7 0.27 0.00 3.77 F
3546 3602 0.110486 ACAGAACCGTGGCAATCCTT 59.890 50.0 0.0 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1821 0.179084 ACGCATGCTACACGGCTAAT 60.179 50.000 17.13 0.0 0.00 1.73 R
2368 2424 0.463474 GGCTGCTCCTCTCATGTTCC 60.463 60.000 0.00 0.0 0.00 3.62 R
2401 2457 1.883638 GCAACTCTGGGACATGCTGAA 60.884 52.381 0.00 0.0 38.20 3.02 R
3755 3811 0.179062 CTGTACCATGCTGGCTCTCC 60.179 60.000 2.50 0.0 42.67 3.71 R
4743 5021 0.035317 CAGGTACAGGCTTGCTGTGA 59.965 55.000 0.00 0.0 36.37 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 217 4.271776 TCATGCACGCATCTCTAATCTTTG 59.728 41.667 0.44 0.00 33.90 2.77
265 269 6.049149 ACATGGAACCTTTATGATCTACACG 58.951 40.000 0.00 0.00 0.00 4.49
266 270 5.670792 TGGAACCTTTATGATCTACACGT 57.329 39.130 0.00 0.00 0.00 4.49
574 579 9.807649 GCAATAATTTGATTGGTAACATCTCTT 57.192 29.630 3.69 0.00 40.27 2.85
581 586 2.253610 TGGTAACATCTCTTCCGTGGT 58.746 47.619 0.00 0.00 46.17 4.16
605 611 2.030823 CGCACGGTATTCGACTAGTACA 59.969 50.000 0.00 0.00 42.43 2.90
621 627 9.674824 CGACTAGTACAATATAAAGTAACCCAG 57.325 37.037 0.00 0.00 0.00 4.45
625 631 7.495055 AGTACAATATAAAGTAACCCAGACGG 58.505 38.462 0.00 0.00 37.81 4.79
628 634 3.926058 ATAAAGTAACCCAGACGGCAT 57.074 42.857 0.00 0.00 33.26 4.40
629 635 2.109425 AAAGTAACCCAGACGGCATC 57.891 50.000 0.00 0.00 33.26 3.91
634 645 1.995376 AACCCAGACGGCATCTTTTT 58.005 45.000 0.00 0.00 34.41 1.94
671 682 0.546122 TACATCACCCACCAGATGCC 59.454 55.000 0.00 0.00 44.16 4.40
678 689 2.345760 CCACCAGATGCCTTGGCAC 61.346 63.158 17.22 10.73 0.00 5.01
730 741 3.647771 GGGTGTTTCCGCCTCCCT 61.648 66.667 0.00 0.00 41.26 4.20
732 743 3.056328 GTGTTTCCGCCTCCCTGC 61.056 66.667 0.00 0.00 0.00 4.85
759 778 1.068250 GTGGGAGGATAGAGCGCAC 59.932 63.158 11.47 2.25 38.10 5.34
786 805 1.134401 TGAGCAAAGGATCCTTAGGCG 60.134 52.381 30.38 20.24 39.70 5.52
787 806 0.912486 AGCAAAGGATCCTTAGGCGT 59.088 50.000 30.38 21.46 39.70 5.68
843 862 1.242076 CCTCTCCAGCCACAAGTTTG 58.758 55.000 0.00 0.00 0.00 2.93
846 865 2.133742 CTCCAGCCACAAGTTTGCGG 62.134 60.000 0.00 0.00 33.57 5.69
867 892 0.471591 TCCACTTTTGCTTGGCCCAT 60.472 50.000 0.00 0.00 32.37 4.00
1013 1039 0.616371 CTCCCCGTCCACCACAATTA 59.384 55.000 0.00 0.00 0.00 1.40
1015 1041 2.436542 CTCCCCGTCCACCACAATTATA 59.563 50.000 0.00 0.00 0.00 0.98
1016 1042 2.171027 TCCCCGTCCACCACAATTATAC 59.829 50.000 0.00 0.00 0.00 1.47
1017 1043 2.092861 CCCCGTCCACCACAATTATACA 60.093 50.000 0.00 0.00 0.00 2.29
1018 1044 3.611970 CCCGTCCACCACAATTATACAA 58.388 45.455 0.00 0.00 0.00 2.41
1019 1045 3.625764 CCCGTCCACCACAATTATACAAG 59.374 47.826 0.00 0.00 0.00 3.16
1020 1046 3.064820 CCGTCCACCACAATTATACAAGC 59.935 47.826 0.00 0.00 0.00 4.01
1021 1047 3.687212 CGTCCACCACAATTATACAAGCA 59.313 43.478 0.00 0.00 0.00 3.91
1022 1048 4.201812 CGTCCACCACAATTATACAAGCAG 60.202 45.833 0.00 0.00 0.00 4.24
1023 1049 3.694072 TCCACCACAATTATACAAGCAGC 59.306 43.478 0.00 0.00 0.00 5.25
1066 1092 1.699656 CTTCCGCGCATCCACAAGAG 61.700 60.000 8.75 0.00 0.00 2.85
1077 1103 1.377994 CACAAGAGCAGCTCCCCTT 59.622 57.895 19.40 4.09 0.00 3.95
1080 1106 1.229788 AAGAGCAGCTCCCCTTCCT 60.230 57.895 19.40 0.00 0.00 3.36
1082 1108 1.992277 GAGCAGCTCCCCTTCCTCA 60.992 63.158 11.84 0.00 0.00 3.86
1083 1109 1.307691 AGCAGCTCCCCTTCCTCAT 60.308 57.895 0.00 0.00 0.00 2.90
1084 1110 1.148048 GCAGCTCCCCTTCCTCATC 59.852 63.158 0.00 0.00 0.00 2.92
1085 1111 1.344191 GCAGCTCCCCTTCCTCATCT 61.344 60.000 0.00 0.00 0.00 2.90
1086 1112 0.469070 CAGCTCCCCTTCCTCATCTG 59.531 60.000 0.00 0.00 0.00 2.90
1087 1113 0.043940 AGCTCCCCTTCCTCATCTGT 59.956 55.000 0.00 0.00 0.00 3.41
1088 1114 0.915364 GCTCCCCTTCCTCATCTGTT 59.085 55.000 0.00 0.00 0.00 3.16
1089 1115 1.134250 GCTCCCCTTCCTCATCTGTTC 60.134 57.143 0.00 0.00 0.00 3.18
1090 1116 2.476199 CTCCCCTTCCTCATCTGTTCT 58.524 52.381 0.00 0.00 0.00 3.01
1091 1117 2.843113 CTCCCCTTCCTCATCTGTTCTT 59.157 50.000 0.00 0.00 0.00 2.52
1092 1118 2.840651 TCCCCTTCCTCATCTGTTCTTC 59.159 50.000 0.00 0.00 0.00 2.87
1093 1119 2.573462 CCCCTTCCTCATCTGTTCTTCA 59.427 50.000 0.00 0.00 0.00 3.02
1094 1120 3.009473 CCCCTTCCTCATCTGTTCTTCAA 59.991 47.826 0.00 0.00 0.00 2.69
1095 1121 4.260170 CCCTTCCTCATCTGTTCTTCAAG 58.740 47.826 0.00 0.00 0.00 3.02
1096 1122 4.019860 CCCTTCCTCATCTGTTCTTCAAGA 60.020 45.833 0.00 0.00 0.00 3.02
1097 1123 5.513788 CCCTTCCTCATCTGTTCTTCAAGAA 60.514 44.000 0.00 0.00 0.00 2.52
1110 1136 0.108585 TCAAGAACAGCACCCAGGAC 59.891 55.000 0.00 0.00 0.00 3.85
1132 1158 1.065551 AGACAGAAAAGGTTTGTGCGC 59.934 47.619 0.00 0.00 0.00 6.09
1146 1172 1.338105 TGTGCGCTGCTGATTTACTCT 60.338 47.619 9.73 0.00 0.00 3.24
1351 1383 4.889112 TCCGGATCGAGGGTCGGG 62.889 72.222 0.00 10.54 42.44 5.14
1443 1489 1.851021 CTCGCCATCGCCAACAACAA 61.851 55.000 0.00 0.00 35.26 2.83
1445 1491 1.734117 GCCATCGCCAACAACAAGC 60.734 57.895 0.00 0.00 0.00 4.01
1455 1501 1.403679 CAACAACAAGCAACGGAAGGA 59.596 47.619 0.00 0.00 0.00 3.36
1456 1502 1.981256 ACAACAAGCAACGGAAGGAT 58.019 45.000 0.00 0.00 0.00 3.24
1462 1509 2.044123 AGCAACGGAAGGATGGATTC 57.956 50.000 0.00 0.00 0.00 2.52
1463 1510 0.657840 GCAACGGAAGGATGGATTCG 59.342 55.000 0.00 0.00 0.00 3.34
1532 1579 3.657350 CCTTCCCCCGGCCTGAAA 61.657 66.667 0.00 0.00 0.00 2.69
1573 1620 1.051812 CCAGAGTCCCATATTCCGCT 58.948 55.000 0.00 0.00 0.00 5.52
1574 1621 1.417890 CCAGAGTCCCATATTCCGCTT 59.582 52.381 0.00 0.00 0.00 4.68
1575 1622 2.548920 CCAGAGTCCCATATTCCGCTTC 60.549 54.545 0.00 0.00 0.00 3.86
1576 1623 1.694696 AGAGTCCCATATTCCGCTTCC 59.305 52.381 0.00 0.00 0.00 3.46
1577 1624 0.393077 AGTCCCATATTCCGCTTCCG 59.607 55.000 0.00 0.00 0.00 4.30
1578 1625 1.070786 TCCCATATTCCGCTTCCGC 59.929 57.895 0.00 0.00 0.00 5.54
1624 1671 4.363990 CTCCGTGCAGCCGACTGT 62.364 66.667 0.00 0.00 46.30 3.55
1740 1787 6.753279 CCGTGAATTGATATGTTGATGCTTTT 59.247 34.615 0.00 0.00 0.00 2.27
1792 1839 0.937304 AATTAGCCGTGTAGCATGCG 59.063 50.000 13.01 0.00 34.23 4.73
1798 1845 1.074319 CCGTGTAGCATGCGTAACGT 61.074 55.000 27.88 9.95 0.00 3.99
1825 1872 2.941720 ACGGACTTAACTACGAGGCTAG 59.058 50.000 0.00 0.00 0.00 3.42
1839 1886 1.069258 GCTAGGATTAAGCCGCGGT 59.931 57.895 28.70 10.76 33.73 5.68
1840 1887 0.532196 GCTAGGATTAAGCCGCGGTT 60.532 55.000 28.70 20.13 33.73 4.44
1841 1888 1.217882 CTAGGATTAAGCCGCGGTTG 58.782 55.000 28.70 1.59 0.00 3.77
1842 1889 0.179067 TAGGATTAAGCCGCGGTTGG 60.179 55.000 28.70 0.27 0.00 3.77
1843 1890 2.478033 GGATTAAGCCGCGGTTGGG 61.478 63.158 28.70 0.00 0.00 4.12
1873 1920 2.228343 ACTCGCGGTTAGAGTATATGGC 59.772 50.000 6.13 0.00 46.06 4.40
1930 1980 1.806542 TCTGCCTTTCGCTTAGCTTTG 59.193 47.619 1.76 0.00 38.78 2.77
2041 2096 3.438781 TCGGCTATTTGCAAACTGGTTAG 59.561 43.478 15.41 12.67 45.15 2.34
2138 2194 7.672240 TGTCTGACATACATGTAGTTTGGTTA 58.328 34.615 11.91 1.30 41.95 2.85
2368 2424 1.342082 AATGTTTCGACGACGCCGAG 61.342 55.000 6.33 0.00 37.35 4.63
2401 2457 1.835927 GCAGCCAACAGGAGAGGTCT 61.836 60.000 0.00 0.00 0.00 3.85
2411 2467 1.830477 AGGAGAGGTCTTCAGCATGTC 59.170 52.381 0.00 0.00 37.40 3.06
2458 2514 1.707427 ACAGGGCCTTCAGAAGAACAT 59.293 47.619 12.14 0.00 0.00 2.71
2581 2637 6.923508 TCATATAGAAAGTAATGTGCGAGTGG 59.076 38.462 0.00 0.00 0.00 4.00
2648 2704 9.500785 AAAAACTTTTTCAGGAGTCAATTTTCA 57.499 25.926 0.00 0.00 0.00 2.69
3132 3188 2.046217 GTTCACCGGAAGAGGGGC 60.046 66.667 9.46 0.00 33.82 5.80
3301 3357 2.095567 CAGTGCACTGCTGTAAATGGAC 60.096 50.000 32.39 0.00 37.15 4.02
3408 3464 3.392285 TGTTCACCATATGCTATGCCTCT 59.608 43.478 0.00 0.00 0.00 3.69
3425 3481 3.231818 CCTCTTGATAGTATGGTCCCGT 58.768 50.000 0.00 0.00 0.00 5.28
3461 3517 6.095440 GTGTGGATGTGTTGCTAATCCTAATT 59.905 38.462 2.85 0.00 40.53 1.40
3546 3602 0.110486 ACAGAACCGTGGCAATCCTT 59.890 50.000 0.00 0.00 0.00 3.36
3615 3671 3.657398 TGATCCAAAGTCATCCATGCT 57.343 42.857 0.00 0.00 0.00 3.79
3617 3673 5.114764 TGATCCAAAGTCATCCATGCTTA 57.885 39.130 0.00 0.00 0.00 3.09
3618 3674 4.883585 TGATCCAAAGTCATCCATGCTTAC 59.116 41.667 0.00 0.00 0.00 2.34
3755 3811 2.771089 TGTTCTGAGCTTGCAAGTAGG 58.229 47.619 26.55 14.54 0.00 3.18
3879 3936 1.876497 ATTTGCCCGAGCGTTGCAAT 61.876 50.000 0.59 0.00 43.78 3.56
3880 3937 2.745906 TTTGCCCGAGCGTTGCAATG 62.746 55.000 14.54 14.54 43.78 2.82
3882 3939 2.745884 CCCGAGCGTTGCAATGGA 60.746 61.111 19.93 0.00 0.00 3.41
3887 3944 1.069296 CGAGCGTTGCAATGGAAGAAA 60.069 47.619 19.93 0.00 0.00 2.52
3888 3945 2.604373 CGAGCGTTGCAATGGAAGAAAA 60.604 45.455 19.93 0.00 0.00 2.29
3927 3984 7.275920 ACCCTAATTTAGTAAGCATGACTCAG 58.724 38.462 0.00 0.00 28.07 3.35
3930 3988 6.893958 AATTTAGTAAGCATGACTCAGTCG 57.106 37.500 0.00 0.00 34.95 4.18
3944 4002 2.603776 GTCGTCCCCCTCACAGGT 60.604 66.667 0.00 0.00 31.93 4.00
3968 4027 1.782028 GCCTTCGTTTCAACACGGCT 61.782 55.000 0.00 0.00 40.74 5.52
3997 4056 3.203487 TCATATTGTTGGTTACCCCTCCC 59.797 47.826 0.00 0.00 0.00 4.30
4001 4060 1.542881 TTGGTTACCCCTCCCCCTG 60.543 63.158 0.00 0.00 0.00 4.45
4004 4063 2.039951 TTACCCCTCCCCCTGTCG 59.960 66.667 0.00 0.00 0.00 4.35
4024 4087 4.260656 GTCGCTTCTTTAATTGCAATGACG 59.739 41.667 13.82 4.30 0.00 4.35
4070 4133 8.958119 ATAATTAGAAACACACCACGATATGT 57.042 30.769 0.00 0.00 0.00 2.29
4181 4244 9.979270 GCATGAAGAATCATATTTATCTAACGG 57.021 33.333 0.00 0.00 44.53 4.44
4254 4352 5.714047 TGTTTGAAACACACATGCTTTACA 58.286 33.333 6.66 0.00 36.25 2.41
4260 4358 7.711846 TGAAACACACATGCTTTACAATACTT 58.288 30.769 0.00 0.00 0.00 2.24
4267 4365 7.647715 ACACATGCTTTACAATACTTGTTTGTC 59.352 33.333 0.00 0.00 42.22 3.18
4269 4367 6.606234 TGCTTTACAATACTTGTTTGTCGA 57.394 33.333 0.00 0.00 42.22 4.20
4305 4403 1.074775 TGGCAACGGGAGCAGAAAT 59.925 52.632 0.00 0.00 42.51 2.17
4307 4405 0.109132 GGCAACGGGAGCAGAAATTG 60.109 55.000 0.00 0.00 0.00 2.32
4314 4414 2.675348 CGGGAGCAGAAATTGAGACTTC 59.325 50.000 0.00 0.00 0.00 3.01
4322 4422 5.451798 GCAGAAATTGAGACTTCAAAACCCA 60.452 40.000 0.00 0.00 45.82 4.51
4324 4424 5.302823 AGAAATTGAGACTTCAAAACCCAGG 59.697 40.000 0.00 0.00 45.82 4.45
4337 4437 2.350863 ACCCAGGGAGAGACAAATCT 57.649 50.000 14.54 0.00 38.15 2.40
4377 4655 9.412460 AGATGAAGATTACAAATCCTATTTGCA 57.588 29.630 11.32 0.00 32.93 4.08
4457 4735 9.471702 AATTGATTGAGATTGGAAGACTTATGT 57.528 29.630 0.00 0.00 0.00 2.29
4468 4746 7.770801 TGGAAGACTTATGTATCATTTGTCG 57.229 36.000 0.00 0.00 0.00 4.35
4609 4887 1.043673 CAAGTAGTAGCCCGGCCTCT 61.044 60.000 5.55 7.48 0.00 3.69
4630 4908 6.000246 TCTAATTATGTGCCTCCATGTGAA 58.000 37.500 0.00 0.00 0.00 3.18
4631 4909 4.989279 AATTATGTGCCTCCATGTGAAC 57.011 40.909 0.00 0.00 0.00 3.18
4632 4910 2.418368 TATGTGCCTCCATGTGAACC 57.582 50.000 0.00 0.00 0.00 3.62
4633 4911 0.405198 ATGTGCCTCCATGTGAACCA 59.595 50.000 0.00 0.00 0.00 3.67
4634 4912 0.405198 TGTGCCTCCATGTGAACCAT 59.595 50.000 0.00 0.00 0.00 3.55
4635 4913 1.203038 TGTGCCTCCATGTGAACCATT 60.203 47.619 0.00 0.00 0.00 3.16
4636 4914 1.474077 GTGCCTCCATGTGAACCATTC 59.526 52.381 0.00 0.00 0.00 2.67
4637 4915 1.355381 TGCCTCCATGTGAACCATTCT 59.645 47.619 0.00 0.00 0.00 2.40
4638 4916 1.747355 GCCTCCATGTGAACCATTCTG 59.253 52.381 0.00 0.00 0.00 3.02
4639 4917 2.881403 GCCTCCATGTGAACCATTCTGT 60.881 50.000 0.00 0.00 0.00 3.41
4640 4918 3.424703 CCTCCATGTGAACCATTCTGTT 58.575 45.455 0.00 0.00 0.00 3.16
4641 4919 3.441572 CCTCCATGTGAACCATTCTGTTC 59.558 47.826 0.00 0.00 43.90 3.18
4654 4932 7.865706 ACCATTCTGTTCAGTAAATACATCC 57.134 36.000 0.00 0.00 0.00 3.51
4655 4933 7.402054 ACCATTCTGTTCAGTAAATACATCCA 58.598 34.615 0.00 0.00 0.00 3.41
4656 4934 7.888021 ACCATTCTGTTCAGTAAATACATCCAA 59.112 33.333 0.00 0.00 0.00 3.53
4657 4935 8.739039 CCATTCTGTTCAGTAAATACATCCAAA 58.261 33.333 0.00 0.00 0.00 3.28
4658 4936 9.559958 CATTCTGTTCAGTAAATACATCCAAAC 57.440 33.333 0.00 0.00 0.00 2.93
4659 4937 8.684386 TTCTGTTCAGTAAATACATCCAAACA 57.316 30.769 0.00 0.00 0.00 2.83
4660 4938 8.322906 TCTGTTCAGTAAATACATCCAAACAG 57.677 34.615 0.00 0.00 41.33 3.16
4661 4939 7.936847 TCTGTTCAGTAAATACATCCAAACAGT 59.063 33.333 10.21 0.00 40.98 3.55
4662 4940 7.870826 TGTTCAGTAAATACATCCAAACAGTG 58.129 34.615 0.00 0.00 0.00 3.66
4680 4958 5.930135 ACAGTGGAAATTCTGTTCAGTAGT 58.070 37.500 0.00 0.00 41.33 2.73
4681 4959 5.760253 ACAGTGGAAATTCTGTTCAGTAGTG 59.240 40.000 0.00 0.00 41.33 2.74
4682 4960 4.757149 AGTGGAAATTCTGTTCAGTAGTGC 59.243 41.667 0.00 0.00 0.00 4.40
4683 4961 4.515191 GTGGAAATTCTGTTCAGTAGTGCA 59.485 41.667 0.00 0.00 0.00 4.57
4684 4962 4.515191 TGGAAATTCTGTTCAGTAGTGCAC 59.485 41.667 9.40 9.40 0.00 4.57
4685 4963 4.757149 GGAAATTCTGTTCAGTAGTGCACT 59.243 41.667 25.12 25.12 38.32 4.40
4686 4964 5.239525 GGAAATTCTGTTCAGTAGTGCACTT 59.760 40.000 27.06 4.60 34.26 3.16
4687 4965 5.931441 AATTCTGTTCAGTAGTGCACTTC 57.069 39.130 27.06 20.59 34.26 3.01
4688 4966 4.672587 TTCTGTTCAGTAGTGCACTTCT 57.327 40.909 27.06 22.76 34.26 2.85
4689 4967 3.982475 TCTGTTCAGTAGTGCACTTCTG 58.018 45.455 35.08 35.08 41.10 3.02
4690 4968 2.478134 CTGTTCAGTAGTGCACTTCTGC 59.522 50.000 35.66 26.60 44.52 4.26
4703 4981 4.825400 GCACTTCTGCAAACAATTGAAAC 58.175 39.130 13.59 0.00 43.62 2.78
4704 4982 4.260334 GCACTTCTGCAAACAATTGAAACC 60.260 41.667 13.59 0.00 43.62 3.27
4705 4983 4.270808 CACTTCTGCAAACAATTGAAACCC 59.729 41.667 13.59 0.00 38.94 4.11
4706 4984 3.467374 TCTGCAAACAATTGAAACCCC 57.533 42.857 13.59 0.00 38.94 4.95
4707 4985 2.134346 CTGCAAACAATTGAAACCCCG 58.866 47.619 13.59 0.00 38.94 5.73
4708 4986 1.757118 TGCAAACAATTGAAACCCCGA 59.243 42.857 13.59 0.00 38.94 5.14
4709 4987 2.131972 GCAAACAATTGAAACCCCGAC 58.868 47.619 13.59 0.00 38.94 4.79
4710 4988 2.223947 GCAAACAATTGAAACCCCGACT 60.224 45.455 13.59 0.00 38.94 4.18
4711 4989 3.638484 CAAACAATTGAAACCCCGACTC 58.362 45.455 13.59 0.00 38.94 3.36
4712 4990 1.519408 ACAATTGAAACCCCGACTCG 58.481 50.000 13.59 0.00 0.00 4.18
4713 4991 1.202722 ACAATTGAAACCCCGACTCGT 60.203 47.619 13.59 0.00 0.00 4.18
4714 4992 2.037511 ACAATTGAAACCCCGACTCGTA 59.962 45.455 13.59 0.00 0.00 3.43
4715 4993 3.267483 CAATTGAAACCCCGACTCGTAT 58.733 45.455 0.00 0.00 0.00 3.06
4716 4994 2.373540 TTGAAACCCCGACTCGTATG 57.626 50.000 0.00 0.00 0.00 2.39
4717 4995 1.259609 TGAAACCCCGACTCGTATGT 58.740 50.000 0.00 0.00 0.00 2.29
4718 4996 2.445427 TGAAACCCCGACTCGTATGTA 58.555 47.619 0.00 0.00 0.00 2.29
4719 4997 2.824936 TGAAACCCCGACTCGTATGTAA 59.175 45.455 0.00 0.00 0.00 2.41
4720 4998 3.448301 TGAAACCCCGACTCGTATGTAAT 59.552 43.478 0.00 0.00 0.00 1.89
4721 4999 4.644234 TGAAACCCCGACTCGTATGTAATA 59.356 41.667 0.00 0.00 0.00 0.98
4722 5000 5.126869 TGAAACCCCGACTCGTATGTAATAA 59.873 40.000 0.00 0.00 0.00 1.40
4723 5001 5.596836 AACCCCGACTCGTATGTAATAAA 57.403 39.130 0.00 0.00 0.00 1.40
4724 5002 5.596836 ACCCCGACTCGTATGTAATAAAA 57.403 39.130 0.00 0.00 0.00 1.52
4725 5003 5.351458 ACCCCGACTCGTATGTAATAAAAC 58.649 41.667 0.00 0.00 0.00 2.43
4726 5004 5.105392 ACCCCGACTCGTATGTAATAAAACA 60.105 40.000 0.00 0.00 0.00 2.83
4727 5005 5.461078 CCCCGACTCGTATGTAATAAAACAG 59.539 44.000 0.00 0.00 31.70 3.16
4728 5006 6.038356 CCCGACTCGTATGTAATAAAACAGT 58.962 40.000 0.00 0.00 31.70 3.55
4729 5007 6.197842 CCCGACTCGTATGTAATAAAACAGTC 59.802 42.308 0.00 0.00 31.70 3.51
4730 5008 6.748658 CCGACTCGTATGTAATAAAACAGTCA 59.251 38.462 0.00 0.00 31.70 3.41
4731 5009 7.274033 CCGACTCGTATGTAATAAAACAGTCAA 59.726 37.037 0.00 0.00 31.70 3.18
4732 5010 8.641155 CGACTCGTATGTAATAAAACAGTCAAA 58.359 33.333 0.00 0.00 31.70 2.69
4733 5011 9.953825 GACTCGTATGTAATAAAACAGTCAAAG 57.046 33.333 0.00 0.00 31.70 2.77
4734 5012 9.485206 ACTCGTATGTAATAAAACAGTCAAAGT 57.515 29.630 0.00 0.00 31.70 2.66
4735 5013 9.953825 CTCGTATGTAATAAAACAGTCAAAGTC 57.046 33.333 0.00 0.00 31.70 3.01
4736 5014 8.641155 TCGTATGTAATAAAACAGTCAAAGTCG 58.359 33.333 0.00 0.00 31.70 4.18
4737 5015 8.430063 CGTATGTAATAAAACAGTCAAAGTCGT 58.570 33.333 0.00 0.00 31.70 4.34
4738 5016 9.737025 GTATGTAATAAAACAGTCAAAGTCGTC 57.263 33.333 0.00 0.00 31.70 4.20
4739 5017 7.773864 TGTAATAAAACAGTCAAAGTCGTCA 57.226 32.000 0.00 0.00 0.00 4.35
4740 5018 7.847487 TGTAATAAAACAGTCAAAGTCGTCAG 58.153 34.615 0.00 0.00 0.00 3.51
4741 5019 5.924475 ATAAAACAGTCAAAGTCGTCAGG 57.076 39.130 0.00 0.00 0.00 3.86
4742 5020 1.583054 AACAGTCAAAGTCGTCAGGC 58.417 50.000 0.00 0.00 0.00 4.85
4743 5021 0.753262 ACAGTCAAAGTCGTCAGGCT 59.247 50.000 0.00 0.00 0.00 4.58
4744 5022 1.269831 ACAGTCAAAGTCGTCAGGCTC 60.270 52.381 0.00 0.00 0.00 4.70
4745 5023 1.040646 AGTCAAAGTCGTCAGGCTCA 58.959 50.000 0.00 0.00 0.00 4.26
4746 5024 1.140816 GTCAAAGTCGTCAGGCTCAC 58.859 55.000 0.00 0.00 0.00 3.51
4747 5025 0.750249 TCAAAGTCGTCAGGCTCACA 59.250 50.000 0.00 0.00 0.00 3.58
4748 5026 1.143305 CAAAGTCGTCAGGCTCACAG 58.857 55.000 0.00 0.00 0.00 3.66
4749 5027 0.601311 AAAGTCGTCAGGCTCACAGC 60.601 55.000 0.00 0.00 41.46 4.40
4750 5028 1.748329 AAGTCGTCAGGCTCACAGCA 61.748 55.000 0.00 0.00 44.75 4.41
4751 5029 1.300931 GTCGTCAGGCTCACAGCAA 60.301 57.895 0.00 0.00 44.75 3.91
4752 5030 1.005748 TCGTCAGGCTCACAGCAAG 60.006 57.895 0.00 0.00 44.75 4.01
4753 5031 2.675056 CGTCAGGCTCACAGCAAGC 61.675 63.158 0.00 0.00 44.75 4.01
4763 5041 3.583383 CAGCAAGCCTGTACCTGC 58.417 61.111 0.00 0.00 36.79 4.85
4764 5042 1.302752 CAGCAAGCCTGTACCTGCA 60.303 57.895 6.50 0.00 36.79 4.41
4765 5043 0.679002 CAGCAAGCCTGTACCTGCAT 60.679 55.000 6.50 0.00 36.79 3.96
4766 5044 0.038744 AGCAAGCCTGTACCTGCATT 59.961 50.000 6.50 0.00 0.00 3.56
4767 5045 0.171903 GCAAGCCTGTACCTGCATTG 59.828 55.000 6.50 8.29 0.00 2.82
4768 5046 0.171903 CAAGCCTGTACCTGCATTGC 59.828 55.000 0.46 0.46 0.00 3.56
4769 5047 0.251297 AAGCCTGTACCTGCATTGCA 60.251 50.000 11.50 11.50 36.92 4.08
4770 5048 0.962356 AGCCTGTACCTGCATTGCAC 60.962 55.000 7.38 0.00 33.79 4.57
4771 5049 1.243342 GCCTGTACCTGCATTGCACA 61.243 55.000 7.38 3.34 33.79 4.57
4772 5050 0.523072 CCTGTACCTGCATTGCACAC 59.477 55.000 7.38 6.77 33.79 3.82
4773 5051 1.237533 CTGTACCTGCATTGCACACA 58.762 50.000 7.38 10.84 33.79 3.72
4774 5052 0.950836 TGTACCTGCATTGCACACAC 59.049 50.000 7.38 6.07 33.79 3.82
4775 5053 0.110238 GTACCTGCATTGCACACACG 60.110 55.000 7.38 0.00 33.79 4.49
4776 5054 1.851021 TACCTGCATTGCACACACGC 61.851 55.000 7.38 0.00 33.79 5.34
4777 5055 2.332159 CTGCATTGCACACACGCA 59.668 55.556 7.38 0.00 41.03 5.24
4778 5056 1.081041 CTGCATTGCACACACGCAT 60.081 52.632 7.38 0.00 42.62 4.73
4779 5057 1.341369 CTGCATTGCACACACGCATG 61.341 55.000 7.38 0.00 42.62 4.06
4780 5058 2.722731 GCATTGCACACACGCATGC 61.723 57.895 7.91 7.91 42.62 4.06
4781 5059 1.081041 CATTGCACACACGCATGCT 60.081 52.632 17.13 0.00 42.62 3.79
4782 5060 1.081041 ATTGCACACACGCATGCTG 60.081 52.632 17.13 14.95 42.62 4.41
4783 5061 1.517210 ATTGCACACACGCATGCTGA 61.517 50.000 17.13 0.00 42.62 4.26
4784 5062 2.120355 TTGCACACACGCATGCTGAG 62.120 55.000 17.13 13.41 42.62 3.35
4785 5063 2.610694 GCACACACGCATGCTGAGT 61.611 57.895 17.13 14.02 38.84 3.41
4786 5064 1.291184 GCACACACGCATGCTGAGTA 61.291 55.000 17.13 0.00 38.84 2.59
4787 5065 1.147473 CACACACGCATGCTGAGTAA 58.853 50.000 17.13 0.00 0.00 2.24
4788 5066 1.530720 CACACACGCATGCTGAGTAAA 59.469 47.619 17.13 0.00 0.00 2.01
4789 5067 2.160219 CACACACGCATGCTGAGTAAAT 59.840 45.455 17.13 1.50 0.00 1.40
4790 5068 2.160219 ACACACGCATGCTGAGTAAATG 59.840 45.455 17.13 8.12 0.00 2.32
4791 5069 1.739466 ACACGCATGCTGAGTAAATGG 59.261 47.619 17.13 0.00 0.00 3.16
4792 5070 2.009051 CACGCATGCTGAGTAAATGGA 58.991 47.619 17.13 0.00 0.00 3.41
4793 5071 2.009774 ACGCATGCTGAGTAAATGGAC 58.990 47.619 17.13 0.00 0.00 4.02
4794 5072 2.009051 CGCATGCTGAGTAAATGGACA 58.991 47.619 17.13 0.00 0.00 4.02
4795 5073 2.419673 CGCATGCTGAGTAAATGGACAA 59.580 45.455 17.13 0.00 0.00 3.18
4796 5074 3.065786 CGCATGCTGAGTAAATGGACAAT 59.934 43.478 17.13 0.00 0.00 2.71
4797 5075 4.439153 CGCATGCTGAGTAAATGGACAATT 60.439 41.667 17.13 0.00 0.00 2.32
4798 5076 5.413499 GCATGCTGAGTAAATGGACAATTT 58.587 37.500 11.37 0.00 41.47 1.82
4799 5077 5.870978 GCATGCTGAGTAAATGGACAATTTT 59.129 36.000 11.37 0.00 39.29 1.82
4800 5078 6.369615 GCATGCTGAGTAAATGGACAATTTTT 59.630 34.615 11.37 0.00 39.29 1.94
4801 5079 7.412237 GCATGCTGAGTAAATGGACAATTTTTC 60.412 37.037 11.37 0.00 39.29 2.29
4802 5080 6.148948 TGCTGAGTAAATGGACAATTTTTCG 58.851 36.000 0.00 0.00 39.29 3.46
4803 5081 6.016693 TGCTGAGTAAATGGACAATTTTTCGA 60.017 34.615 0.00 0.00 39.29 3.71
4804 5082 7.029563 GCTGAGTAAATGGACAATTTTTCGAT 58.970 34.615 0.00 0.00 39.29 3.59
4805 5083 7.542130 GCTGAGTAAATGGACAATTTTTCGATT 59.458 33.333 0.00 0.00 39.29 3.34
4807 5085 9.834628 TGAGTAAATGGACAATTTTTCGATTAC 57.165 29.630 0.00 0.00 39.29 1.89
4815 5093 9.849166 TGGACAATTTTTCGATTACTTTAATCC 57.151 29.630 0.00 0.00 41.10 3.01
4816 5094 9.849166 GGACAATTTTTCGATTACTTTAATCCA 57.151 29.630 0.00 0.00 41.10 3.41
4837 5115 9.664332 AATCCATAGATAAATCACTAGCATGAC 57.336 33.333 0.00 0.00 30.42 3.06
4838 5116 8.193953 TCCATAGATAAATCACTAGCATGACA 57.806 34.615 0.00 0.00 0.00 3.58
4839 5117 8.819845 TCCATAGATAAATCACTAGCATGACAT 58.180 33.333 0.00 0.00 0.00 3.06
4840 5118 9.445878 CCATAGATAAATCACTAGCATGACATT 57.554 33.333 0.00 0.00 0.00 2.71
4843 5121 8.375608 AGATAAATCACTAGCATGACATTGAC 57.624 34.615 0.00 0.00 0.00 3.18
4844 5122 8.209584 AGATAAATCACTAGCATGACATTGACT 58.790 33.333 0.00 0.00 0.00 3.41
4845 5123 6.432607 AAATCACTAGCATGACATTGACTG 57.567 37.500 0.00 0.00 0.00 3.51
4846 5124 4.806640 TCACTAGCATGACATTGACTGA 57.193 40.909 0.00 0.00 0.00 3.41
4847 5125 5.151297 TCACTAGCATGACATTGACTGAA 57.849 39.130 0.00 0.00 0.00 3.02
4848 5126 5.737860 TCACTAGCATGACATTGACTGAAT 58.262 37.500 0.00 0.00 0.00 2.57
4849 5127 6.175471 TCACTAGCATGACATTGACTGAATT 58.825 36.000 0.00 0.00 0.00 2.17
4850 5128 7.330262 TCACTAGCATGACATTGACTGAATTA 58.670 34.615 0.00 0.00 0.00 1.40
4851 5129 7.823799 TCACTAGCATGACATTGACTGAATTAA 59.176 33.333 0.00 0.00 0.00 1.40
4852 5130 7.907045 CACTAGCATGACATTGACTGAATTAAC 59.093 37.037 0.00 0.00 0.00 2.01
4853 5131 5.872635 AGCATGACATTGACTGAATTAACG 58.127 37.500 0.00 0.00 0.00 3.18
4854 5132 5.643348 AGCATGACATTGACTGAATTAACGA 59.357 36.000 0.00 0.00 0.00 3.85
4855 5133 5.734498 GCATGACATTGACTGAATTAACGAC 59.266 40.000 0.00 0.00 0.00 4.34
4856 5134 6.620518 GCATGACATTGACTGAATTAACGACA 60.621 38.462 0.00 0.00 0.00 4.35
4857 5135 7.466805 CATGACATTGACTGAATTAACGACAT 58.533 34.615 0.00 0.00 0.00 3.06
4858 5136 8.603181 CATGACATTGACTGAATTAACGACATA 58.397 33.333 0.00 0.00 0.00 2.29
4859 5137 8.716646 TGACATTGACTGAATTAACGACATAT 57.283 30.769 0.00 0.00 0.00 1.78
4860 5138 8.817100 TGACATTGACTGAATTAACGACATATC 58.183 33.333 0.00 0.00 0.00 1.63
4879 5157 7.865707 ACATATCGATTTTGATCTAACCAAGC 58.134 34.615 1.71 0.00 0.00 4.01
4880 5158 7.498900 ACATATCGATTTTGATCTAACCAAGCA 59.501 33.333 1.71 0.00 0.00 3.91
4881 5159 6.949352 ATCGATTTTGATCTAACCAAGCAT 57.051 33.333 0.00 0.00 0.00 3.79
4882 5160 6.122850 TCGATTTTGATCTAACCAAGCATG 57.877 37.500 0.00 0.00 0.00 4.06
4883 5161 5.647658 TCGATTTTGATCTAACCAAGCATGT 59.352 36.000 0.00 0.00 0.00 3.21
4884 5162 6.821160 TCGATTTTGATCTAACCAAGCATGTA 59.179 34.615 0.00 0.00 0.00 2.29
4885 5163 6.907212 CGATTTTGATCTAACCAAGCATGTAC 59.093 38.462 0.00 0.00 0.00 2.90
4886 5164 7.201644 CGATTTTGATCTAACCAAGCATGTACT 60.202 37.037 0.00 0.00 0.00 2.73
4887 5165 9.109393 GATTTTGATCTAACCAAGCATGTACTA 57.891 33.333 0.00 0.00 0.00 1.82
4888 5166 7.843490 TTTGATCTAACCAAGCATGTACTAC 57.157 36.000 0.00 0.00 0.00 2.73
4889 5167 5.588240 TGATCTAACCAAGCATGTACTACG 58.412 41.667 0.00 0.00 0.00 3.51
4890 5168 3.777478 TCTAACCAAGCATGTACTACGC 58.223 45.455 0.00 0.00 0.00 4.42
4891 5169 2.465860 AACCAAGCATGTACTACGCA 57.534 45.000 0.00 0.00 0.00 5.24
4892 5170 2.465860 ACCAAGCATGTACTACGCAA 57.534 45.000 0.00 0.00 0.00 4.85
4893 5171 2.773487 ACCAAGCATGTACTACGCAAA 58.227 42.857 0.00 0.00 0.00 3.68
4894 5172 2.482721 ACCAAGCATGTACTACGCAAAC 59.517 45.455 0.00 0.00 0.00 2.93
4895 5173 2.482336 CCAAGCATGTACTACGCAAACA 59.518 45.455 0.00 0.00 0.00 2.83
4896 5174 3.424829 CCAAGCATGTACTACGCAAACAG 60.425 47.826 0.00 0.00 0.00 3.16
4897 5175 3.040147 AGCATGTACTACGCAAACAGT 57.960 42.857 0.00 0.00 0.00 3.55
4898 5176 4.182693 AGCATGTACTACGCAAACAGTA 57.817 40.909 0.00 0.00 0.00 2.74
4899 5177 4.174009 AGCATGTACTACGCAAACAGTAG 58.826 43.478 0.00 2.25 45.11 2.57
4900 5178 4.082408 AGCATGTACTACGCAAACAGTAGA 60.082 41.667 9.96 0.00 43.00 2.59
4901 5179 4.031426 GCATGTACTACGCAAACAGTAGAC 59.969 45.833 9.96 5.19 43.00 2.59
4902 5180 4.834357 TGTACTACGCAAACAGTAGACA 57.166 40.909 9.96 7.25 43.00 3.41
4903 5181 5.381174 TGTACTACGCAAACAGTAGACAT 57.619 39.130 9.96 0.00 43.00 3.06
4904 5182 6.499234 TGTACTACGCAAACAGTAGACATA 57.501 37.500 9.96 0.00 43.00 2.29
4905 5183 7.092137 TGTACTACGCAAACAGTAGACATAT 57.908 36.000 9.96 0.00 43.00 1.78
4906 5184 7.191551 TGTACTACGCAAACAGTAGACATATC 58.808 38.462 9.96 0.00 43.00 1.63
4907 5185 6.452494 ACTACGCAAACAGTAGACATATCT 57.548 37.500 9.96 0.00 43.00 1.98
4908 5186 7.563888 ACTACGCAAACAGTAGACATATCTA 57.436 36.000 9.96 0.00 43.00 1.98
4927 5205 9.295214 CATATCTACACATACTGCTAATACTGC 57.705 37.037 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 217 1.890876 TGTACATCAGCCAACACCAC 58.109 50.000 0.00 0.00 0.00 4.16
265 269 3.990092 TCTGTCACATGGTGTAGTTGAC 58.010 45.455 0.00 0.29 34.79 3.18
266 270 4.890158 ATCTGTCACATGGTGTAGTTGA 57.110 40.909 0.00 0.00 34.79 3.18
561 566 2.253610 ACCACGGAAGAGATGTTACCA 58.746 47.619 0.00 0.00 0.00 3.25
581 586 2.677836 ACTAGTCGAATACCGTGCGTTA 59.322 45.455 0.00 0.00 39.75 3.18
605 611 5.362105 TGCCGTCTGGGTTACTTTATATT 57.638 39.130 0.00 0.00 38.44 1.28
615 621 1.613437 CAAAAAGATGCCGTCTGGGTT 59.387 47.619 0.00 0.00 37.23 4.11
621 627 3.692791 GGTATCCAAAAAGATGCCGTC 57.307 47.619 0.00 0.00 38.93 4.79
625 631 3.445096 AGCTGTGGTATCCAAAAAGATGC 59.555 43.478 0.00 0.00 34.18 3.91
628 634 5.499004 ACTAGCTGTGGTATCCAAAAAGA 57.501 39.130 0.00 0.00 34.18 2.52
629 635 6.575162 AAACTAGCTGTGGTATCCAAAAAG 57.425 37.500 0.00 0.00 34.18 2.27
634 645 5.423931 TGATGTAAACTAGCTGTGGTATCCA 59.576 40.000 0.00 0.00 0.00 3.41
671 682 3.423154 GCCCTCGAACGTGCCAAG 61.423 66.667 0.00 0.00 0.00 3.61
730 741 0.693622 TCCTCCCACGTAATTTGGCA 59.306 50.000 0.00 0.00 32.13 4.92
732 743 4.632153 CTCTATCCTCCCACGTAATTTGG 58.368 47.826 0.00 0.00 0.00 3.28
759 778 7.120432 GCCTAAGGATCCTTTGCTCAAATATAG 59.880 40.741 31.45 17.10 37.47 1.31
843 862 1.372128 CAAGCAAAAGTGGAGCCGC 60.372 57.895 0.00 0.00 0.00 6.53
846 865 1.005748 GGCCAAGCAAAAGTGGAGC 60.006 57.895 0.00 0.00 37.03 4.70
867 892 2.523168 TGGTGAGGTGTGAGCCGA 60.523 61.111 0.00 0.00 0.00 5.54
941 967 0.110238 CGACCAAAGCGACACAATGG 60.110 55.000 0.00 0.00 37.19 3.16
1013 1039 2.478989 CTGCTGCTGCTGCTTGTAT 58.521 52.632 27.67 0.00 40.48 2.29
1066 1092 1.148048 GATGAGGAAGGGGAGCTGC 59.852 63.158 0.00 0.00 0.00 5.25
1087 1113 2.575532 CTGGGTGCTGTTCTTGAAGAA 58.424 47.619 3.02 3.02 0.00 2.52
1088 1114 1.202806 CCTGGGTGCTGTTCTTGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
1089 1115 1.202806 TCCTGGGTGCTGTTCTTGAAG 60.203 52.381 0.00 0.00 0.00 3.02
1090 1116 0.843309 TCCTGGGTGCTGTTCTTGAA 59.157 50.000 0.00 0.00 0.00 2.69
1091 1117 0.108585 GTCCTGGGTGCTGTTCTTGA 59.891 55.000 0.00 0.00 0.00 3.02
1092 1118 0.179020 TGTCCTGGGTGCTGTTCTTG 60.179 55.000 0.00 0.00 0.00 3.02
1093 1119 0.550914 TTGTCCTGGGTGCTGTTCTT 59.449 50.000 0.00 0.00 0.00 2.52
1094 1120 0.109342 CTTGTCCTGGGTGCTGTTCT 59.891 55.000 0.00 0.00 0.00 3.01
1095 1121 0.108585 TCTTGTCCTGGGTGCTGTTC 59.891 55.000 0.00 0.00 0.00 3.18
1096 1122 0.179018 GTCTTGTCCTGGGTGCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
1097 1123 1.344953 TGTCTTGTCCTGGGTGCTGT 61.345 55.000 0.00 0.00 0.00 4.40
1098 1124 0.604780 CTGTCTTGTCCTGGGTGCTG 60.605 60.000 0.00 0.00 0.00 4.41
1099 1125 0.764369 TCTGTCTTGTCCTGGGTGCT 60.764 55.000 0.00 0.00 0.00 4.40
1100 1126 0.108585 TTCTGTCTTGTCCTGGGTGC 59.891 55.000 0.00 0.00 0.00 5.01
1110 1136 3.108144 CGCACAAACCTTTTCTGTCTTG 58.892 45.455 0.00 0.00 0.00 3.02
1132 1158 6.091986 GGAAGAACAGAAGAGTAAATCAGCAG 59.908 42.308 0.00 0.00 0.00 4.24
1146 1172 6.122277 ACAAATCAACAGAGGAAGAACAGAA 58.878 36.000 0.00 0.00 0.00 3.02
1228 1256 4.149598 ACCGGCAGAGGTTAAAAAGAAAT 58.850 39.130 0.00 0.00 43.00 2.17
1332 1364 2.645567 CGACCCTCGATCCGGATG 59.354 66.667 24.82 14.35 43.74 3.51
1443 1489 1.743772 CGAATCCATCCTTCCGTTGCT 60.744 52.381 0.00 0.00 0.00 3.91
1445 1491 2.024176 ACGAATCCATCCTTCCGTTG 57.976 50.000 0.00 0.00 0.00 4.10
1455 1501 5.039920 TCTCCATGAATCAACGAATCCAT 57.960 39.130 0.00 0.00 0.00 3.41
1456 1502 4.486125 TCTCCATGAATCAACGAATCCA 57.514 40.909 0.00 0.00 0.00 3.41
1462 1509 5.052481 TCTTAGCATCTCCATGAATCAACG 58.948 41.667 0.00 0.00 30.57 4.10
1463 1510 7.507733 AATCTTAGCATCTCCATGAATCAAC 57.492 36.000 0.00 0.00 30.57 3.18
1661 1708 3.977244 GTTGGGCACTTGGGCACG 61.977 66.667 0.00 0.00 45.66 5.34
1667 1714 3.294493 CCACCGGTTGGGCACTTG 61.294 66.667 2.97 0.00 42.54 3.16
1675 1722 1.672356 CAGAAGAGGCCACCGGTTG 60.672 63.158 2.97 1.36 0.00 3.77
1680 1727 0.329596 ATTGACCAGAAGAGGCCACC 59.670 55.000 5.01 0.00 0.00 4.61
1770 1817 3.730662 CGCATGCTACACGGCTAATTTTT 60.731 43.478 17.13 0.00 0.00 1.94
1771 1818 2.223249 CGCATGCTACACGGCTAATTTT 60.223 45.455 17.13 0.00 0.00 1.82
1772 1819 1.330521 CGCATGCTACACGGCTAATTT 59.669 47.619 17.13 0.00 0.00 1.82
1773 1820 0.937304 CGCATGCTACACGGCTAATT 59.063 50.000 17.13 0.00 0.00 1.40
1774 1821 0.179084 ACGCATGCTACACGGCTAAT 60.179 50.000 17.13 0.00 0.00 1.73
1781 1828 2.789208 TCTACGTTACGCATGCTACAC 58.211 47.619 17.13 7.96 0.00 2.90
1798 1845 5.237344 GCCTCGTAGTTAAGTCCGTTATCTA 59.763 44.000 0.00 0.00 0.00 1.98
1825 1872 2.478033 CCCAACCGCGGCTTAATCC 61.478 63.158 28.58 0.00 0.00 3.01
1836 1883 1.379527 GAGTTAGCAATCCCCAACCG 58.620 55.000 0.00 0.00 0.00 4.44
1839 1886 0.742990 CGCGAGTTAGCAATCCCCAA 60.743 55.000 0.00 0.00 36.85 4.12
1840 1887 1.153449 CGCGAGTTAGCAATCCCCA 60.153 57.895 0.00 0.00 36.85 4.96
1841 1888 1.887707 CCGCGAGTTAGCAATCCCC 60.888 63.158 8.23 0.00 36.85 4.81
1842 1889 0.743345 AACCGCGAGTTAGCAATCCC 60.743 55.000 8.23 0.00 36.74 3.85
1843 1890 1.930567 TAACCGCGAGTTAGCAATCC 58.069 50.000 8.23 0.00 40.05 3.01
1870 1917 1.667830 GTTGCTGCTACTCGTGCCA 60.668 57.895 6.98 0.00 0.00 4.92
1871 1918 2.391389 GGTTGCTGCTACTCGTGCC 61.391 63.158 13.54 0.00 0.00 5.01
1872 1919 1.630244 CTGGTTGCTGCTACTCGTGC 61.630 60.000 13.54 0.00 0.00 5.34
1873 1920 1.630244 GCTGGTTGCTGCTACTCGTG 61.630 60.000 13.54 3.81 38.95 4.35
1930 1980 9.590088 GCATCAAAAATGATTTCTGTTTCTTTC 57.410 29.630 0.00 0.00 0.00 2.62
1987 2042 2.287970 ACAAGTCACTCGTGCGTATTCA 60.288 45.455 0.00 0.00 0.00 2.57
2041 2096 3.631227 CAGGATCTCTTTCAATTCAGGGC 59.369 47.826 0.00 0.00 0.00 5.19
2235 2291 1.740025 GCTCTGTCTTTTGATTCCCGG 59.260 52.381 0.00 0.00 0.00 5.73
2236 2292 2.426522 TGCTCTGTCTTTTGATTCCCG 58.573 47.619 0.00 0.00 0.00 5.14
2368 2424 0.463474 GGCTGCTCCTCTCATGTTCC 60.463 60.000 0.00 0.00 0.00 3.62
2401 2457 1.883638 GCAACTCTGGGACATGCTGAA 60.884 52.381 0.00 0.00 38.20 3.02
2411 2467 2.775911 TCTGAAGATGCAACTCTGGG 57.224 50.000 0.00 0.00 0.00 4.45
2538 2594 9.363401 TCTATATGAGCCTTTAGTAAAGCACTA 57.637 33.333 15.95 4.28 38.80 2.74
2581 2637 2.417339 TGCATAAGATCTACGGCGAC 57.583 50.000 16.62 0.00 0.00 5.19
2648 2704 6.449830 TCCATCATCCTCATTTCATCATCT 57.550 37.500 0.00 0.00 0.00 2.90
2721 2777 4.141981 ACTCAGCATGTTCTCATAGGACAG 60.142 45.833 0.00 0.00 37.40 3.51
2775 2831 5.068987 CCATTTCATTATGACCCGGATTTGT 59.931 40.000 0.73 0.00 0.00 2.83
3431 3487 3.423539 AGCAACACATCCACACTACAT 57.576 42.857 0.00 0.00 0.00 2.29
3461 3517 4.159321 TGCTGAAATTGTCCAGTGAAAACA 59.841 37.500 0.00 0.00 33.19 2.83
3615 3671 5.500234 CTTCACCTTTGATGATCCAGGTAA 58.500 41.667 11.82 0.00 37.56 2.85
3617 3673 3.308688 CCTTCACCTTTGATGATCCAGGT 60.309 47.826 7.43 7.43 40.50 4.00
3618 3674 3.054139 TCCTTCACCTTTGATGATCCAGG 60.054 47.826 6.29 6.29 0.00 4.45
3675 3731 1.203052 CATGAAGCAAAATGGCGAGGT 59.797 47.619 0.00 0.00 39.27 3.85
3755 3811 0.179062 CTGTACCATGCTGGCTCTCC 60.179 60.000 2.50 0.00 42.67 3.71
3869 3926 3.451141 TTTTTCTTCCATTGCAACGCT 57.549 38.095 0.00 0.00 0.00 5.07
3899 3956 9.780186 GAGTCATGCTTACTAAATTAGGGTTAT 57.220 33.333 4.92 0.00 0.00 1.89
3900 3957 8.764558 TGAGTCATGCTTACTAAATTAGGGTTA 58.235 33.333 4.92 0.00 0.00 2.85
3901 3958 7.630082 TGAGTCATGCTTACTAAATTAGGGTT 58.370 34.615 4.92 0.00 0.00 4.11
3910 3967 4.142447 GGACGACTGAGTCATGCTTACTAA 60.142 45.833 13.67 0.00 42.62 2.24
3927 3984 2.603776 ACCTGTGAGGGGGACGAC 60.604 66.667 0.00 0.00 40.58 4.34
3930 3988 2.283676 TCGACCTGTGAGGGGGAC 60.284 66.667 0.00 0.00 40.58 4.46
3955 4013 2.335011 GGGCAGCCGTGTTGAAAC 59.665 61.111 5.00 0.00 0.00 2.78
3968 4027 2.897271 ACCAACAATATGAGTGGGCA 57.103 45.000 2.57 0.00 33.07 5.36
3997 4056 2.487762 TGCAATTAAAGAAGCGACAGGG 59.512 45.455 0.00 0.00 0.00 4.45
4001 4060 4.260656 CGTCATTGCAATTAAAGAAGCGAC 59.739 41.667 9.83 9.63 0.00 5.19
4004 4063 5.153513 TGTCGTCATTGCAATTAAAGAAGC 58.846 37.500 9.83 4.13 0.00 3.86
4060 4123 8.197988 AGCTTCTTAACTTTTACATATCGTGG 57.802 34.615 0.00 0.00 0.00 4.94
4225 4323 5.521010 AGCATGTGTGTTTCAAACATTTCTG 59.479 36.000 6.17 4.17 39.01 3.02
4226 4324 5.663456 AGCATGTGTGTTTCAAACATTTCT 58.337 33.333 6.17 0.00 39.01 2.52
4230 4328 6.336566 TGTAAAGCATGTGTGTTTCAAACAT 58.663 32.000 6.17 0.00 42.36 2.71
4277 4375 3.016736 CTCCCGTTGCCACAAAATAGAT 58.983 45.455 0.00 0.00 0.00 1.98
4279 4377 1.135402 GCTCCCGTTGCCACAAAATAG 60.135 52.381 0.00 0.00 0.00 1.73
4305 4403 2.512056 TCCCTGGGTTTTGAAGTCTCAA 59.488 45.455 13.56 0.00 39.87 3.02
4307 4405 2.372172 TCTCCCTGGGTTTTGAAGTCTC 59.628 50.000 13.56 0.00 0.00 3.36
4314 4414 2.656947 TTGTCTCTCCCTGGGTTTTG 57.343 50.000 13.56 2.22 0.00 2.44
4322 4422 2.373169 TGCAACAGATTTGTCTCTCCCT 59.627 45.455 0.00 0.00 36.23 4.20
4324 4424 4.005650 TCATGCAACAGATTTGTCTCTCC 58.994 43.478 0.00 0.00 36.23 3.71
4426 4704 7.449395 AGTCTTCCAATCTCAATCAATTGTGAA 59.551 33.333 5.13 0.00 41.69 3.18
4468 4746 8.061857 GCCTTAAGTTTTATTGTTCTTTTGCAC 58.938 33.333 0.97 0.00 0.00 4.57
4544 4822 6.457355 TGGATGAATTTCCACTGTTTGAATG 58.543 36.000 0.00 0.00 40.90 2.67
4609 4887 4.887071 GGTTCACATGGAGGCACATAATTA 59.113 41.667 0.00 0.00 0.00 1.40
4630 4908 7.402054 TGGATGTATTTACTGAACAGAATGGT 58.598 34.615 8.87 0.00 42.46 3.55
4631 4909 7.864108 TGGATGTATTTACTGAACAGAATGG 57.136 36.000 8.87 0.00 43.62 3.16
4632 4910 9.559958 GTTTGGATGTATTTACTGAACAGAATG 57.440 33.333 8.87 0.00 46.00 2.67
4633 4911 9.295825 TGTTTGGATGTATTTACTGAACAGAAT 57.704 29.630 8.87 2.06 0.00 2.40
4634 4912 8.684386 TGTTTGGATGTATTTACTGAACAGAA 57.316 30.769 8.87 0.00 0.00 3.02
4635 4913 7.936847 ACTGTTTGGATGTATTTACTGAACAGA 59.063 33.333 16.44 0.00 42.25 3.41
4636 4914 8.017373 CACTGTTTGGATGTATTTACTGAACAG 58.983 37.037 9.96 9.96 44.09 3.16
4637 4915 7.870826 CACTGTTTGGATGTATTTACTGAACA 58.129 34.615 0.00 0.00 0.00 3.18
4658 4936 5.334414 GCACTACTGAACAGAATTTCCACTG 60.334 44.000 8.87 0.00 39.65 3.66
4659 4937 4.757149 GCACTACTGAACAGAATTTCCACT 59.243 41.667 8.87 0.00 0.00 4.00
4660 4938 4.515191 TGCACTACTGAACAGAATTTCCAC 59.485 41.667 8.87 0.00 0.00 4.02
4661 4939 4.515191 GTGCACTACTGAACAGAATTTCCA 59.485 41.667 10.32 0.00 0.00 3.53
4662 4940 4.757149 AGTGCACTACTGAACAGAATTTCC 59.243 41.667 20.16 0.00 38.49 3.13
4663 4941 5.931441 AGTGCACTACTGAACAGAATTTC 57.069 39.130 20.16 0.00 38.49 2.17
4664 4942 6.017605 CAGAAGTGCACTACTGAACAGAATTT 60.018 38.462 22.01 0.00 40.26 1.82
4665 4943 5.468072 CAGAAGTGCACTACTGAACAGAATT 59.532 40.000 22.01 0.00 40.26 2.17
4666 4944 4.993584 CAGAAGTGCACTACTGAACAGAAT 59.006 41.667 22.01 0.00 40.26 2.40
4667 4945 4.371786 CAGAAGTGCACTACTGAACAGAA 58.628 43.478 22.01 0.00 40.26 3.02
4668 4946 3.982475 CAGAAGTGCACTACTGAACAGA 58.018 45.455 22.01 0.00 40.26 3.41
4682 4960 4.270808 GGGTTTCAATTGTTTGCAGAAGTG 59.729 41.667 5.13 0.00 32.61 3.16
4683 4961 4.441792 GGGTTTCAATTGTTTGCAGAAGT 58.558 39.130 5.13 0.00 32.61 3.01
4684 4962 3.809279 GGGGTTTCAATTGTTTGCAGAAG 59.191 43.478 5.13 0.00 32.61 2.85
4685 4963 3.739519 CGGGGTTTCAATTGTTTGCAGAA 60.740 43.478 5.13 0.00 32.61 3.02
4686 4964 2.223923 CGGGGTTTCAATTGTTTGCAGA 60.224 45.455 5.13 0.00 32.61 4.26
4687 4965 2.134346 CGGGGTTTCAATTGTTTGCAG 58.866 47.619 5.13 0.00 32.61 4.41
4688 4966 1.757118 TCGGGGTTTCAATTGTTTGCA 59.243 42.857 5.13 0.00 32.61 4.08
4689 4967 2.131972 GTCGGGGTTTCAATTGTTTGC 58.868 47.619 5.13 0.00 32.61 3.68
4690 4968 3.638484 GAGTCGGGGTTTCAATTGTTTG 58.362 45.455 5.13 0.00 0.00 2.93
4691 4969 2.292292 CGAGTCGGGGTTTCAATTGTTT 59.708 45.455 4.10 0.00 0.00 2.83
4692 4970 1.877443 CGAGTCGGGGTTTCAATTGTT 59.123 47.619 4.10 0.00 0.00 2.83
4693 4971 1.202722 ACGAGTCGGGGTTTCAATTGT 60.203 47.619 18.30 0.00 0.00 2.71
4694 4972 1.519408 ACGAGTCGGGGTTTCAATTG 58.481 50.000 18.30 0.00 0.00 2.32
4695 4973 3.267483 CATACGAGTCGGGGTTTCAATT 58.733 45.455 18.30 0.00 0.00 2.32
4696 4974 2.235402 ACATACGAGTCGGGGTTTCAAT 59.765 45.455 18.30 0.00 0.00 2.57
4697 4975 1.619827 ACATACGAGTCGGGGTTTCAA 59.380 47.619 18.30 0.00 0.00 2.69
4698 4976 1.259609 ACATACGAGTCGGGGTTTCA 58.740 50.000 18.30 0.00 0.00 2.69
4699 4977 3.508744 TTACATACGAGTCGGGGTTTC 57.491 47.619 18.30 0.00 0.00 2.78
4700 4978 5.596836 TTATTACATACGAGTCGGGGTTT 57.403 39.130 18.30 0.00 0.00 3.27
4701 4979 5.596836 TTTATTACATACGAGTCGGGGTT 57.403 39.130 18.30 0.00 0.00 4.11
4702 4980 5.105392 TGTTTTATTACATACGAGTCGGGGT 60.105 40.000 18.30 13.56 0.00 4.95
4703 4981 5.350633 TGTTTTATTACATACGAGTCGGGG 58.649 41.667 18.30 8.10 0.00 5.73
4704 4982 6.038356 ACTGTTTTATTACATACGAGTCGGG 58.962 40.000 18.30 8.47 0.00 5.14
4705 4983 6.748658 TGACTGTTTTATTACATACGAGTCGG 59.251 38.462 18.30 1.22 0.00 4.79
4706 4984 7.730067 TGACTGTTTTATTACATACGAGTCG 57.270 36.000 11.85 11.85 0.00 4.18
4707 4985 9.953825 CTTTGACTGTTTTATTACATACGAGTC 57.046 33.333 0.00 0.00 0.00 3.36
4708 4986 9.485206 ACTTTGACTGTTTTATTACATACGAGT 57.515 29.630 0.00 0.00 0.00 4.18
4709 4987 9.953825 GACTTTGACTGTTTTATTACATACGAG 57.046 33.333 0.00 0.00 0.00 4.18
4710 4988 8.641155 CGACTTTGACTGTTTTATTACATACGA 58.359 33.333 0.00 0.00 0.00 3.43
4711 4989 8.430063 ACGACTTTGACTGTTTTATTACATACG 58.570 33.333 0.00 0.00 0.00 3.06
4712 4990 9.737025 GACGACTTTGACTGTTTTATTACATAC 57.263 33.333 0.00 0.00 0.00 2.39
4713 4991 9.478768 TGACGACTTTGACTGTTTTATTACATA 57.521 29.630 0.00 0.00 0.00 2.29
4714 4992 8.373048 TGACGACTTTGACTGTTTTATTACAT 57.627 30.769 0.00 0.00 0.00 2.29
4715 4993 7.042321 CCTGACGACTTTGACTGTTTTATTACA 60.042 37.037 0.00 0.00 0.00 2.41
4716 4994 7.288672 CCTGACGACTTTGACTGTTTTATTAC 58.711 38.462 0.00 0.00 0.00 1.89
4717 4995 6.073440 GCCTGACGACTTTGACTGTTTTATTA 60.073 38.462 0.00 0.00 0.00 0.98
4718 4996 5.277828 GCCTGACGACTTTGACTGTTTTATT 60.278 40.000 0.00 0.00 0.00 1.40
4719 4997 4.213482 GCCTGACGACTTTGACTGTTTTAT 59.787 41.667 0.00 0.00 0.00 1.40
4720 4998 3.558418 GCCTGACGACTTTGACTGTTTTA 59.442 43.478 0.00 0.00 0.00 1.52
4721 4999 2.354821 GCCTGACGACTTTGACTGTTTT 59.645 45.455 0.00 0.00 0.00 2.43
4722 5000 1.940613 GCCTGACGACTTTGACTGTTT 59.059 47.619 0.00 0.00 0.00 2.83
4723 5001 1.139058 AGCCTGACGACTTTGACTGTT 59.861 47.619 0.00 0.00 0.00 3.16
4724 5002 0.753262 AGCCTGACGACTTTGACTGT 59.247 50.000 0.00 0.00 0.00 3.55
4725 5003 1.269778 TGAGCCTGACGACTTTGACTG 60.270 52.381 0.00 0.00 0.00 3.51
4726 5004 1.040646 TGAGCCTGACGACTTTGACT 58.959 50.000 0.00 0.00 0.00 3.41
4727 5005 1.140816 GTGAGCCTGACGACTTTGAC 58.859 55.000 0.00 0.00 0.00 3.18
4728 5006 0.750249 TGTGAGCCTGACGACTTTGA 59.250 50.000 0.00 0.00 0.00 2.69
4729 5007 1.143305 CTGTGAGCCTGACGACTTTG 58.857 55.000 0.00 0.00 0.00 2.77
4730 5008 0.601311 GCTGTGAGCCTGACGACTTT 60.601 55.000 0.00 0.00 34.48 2.66
4731 5009 1.005630 GCTGTGAGCCTGACGACTT 60.006 57.895 0.00 0.00 34.48 3.01
4732 5010 1.748329 TTGCTGTGAGCCTGACGACT 61.748 55.000 0.00 0.00 41.51 4.18
4733 5011 1.287730 CTTGCTGTGAGCCTGACGAC 61.288 60.000 0.00 0.00 41.51 4.34
4734 5012 1.005748 CTTGCTGTGAGCCTGACGA 60.006 57.895 0.00 0.00 41.51 4.20
4735 5013 2.675056 GCTTGCTGTGAGCCTGACG 61.675 63.158 0.00 0.00 41.51 4.35
4736 5014 3.261933 GCTTGCTGTGAGCCTGAC 58.738 61.111 0.00 0.00 41.51 3.51
4741 5019 1.301677 GGTACAGGCTTGCTGTGAGC 61.302 60.000 0.00 0.00 42.82 4.26
4742 5020 0.322975 AGGTACAGGCTTGCTGTGAG 59.677 55.000 0.00 0.00 36.37 3.51
4743 5021 0.035317 CAGGTACAGGCTTGCTGTGA 59.965 55.000 0.00 0.00 36.37 3.58
4744 5022 1.580845 GCAGGTACAGGCTTGCTGTG 61.581 60.000 0.00 0.00 38.27 3.66
4745 5023 1.302832 GCAGGTACAGGCTTGCTGT 60.303 57.895 0.00 0.00 38.27 4.40
4746 5024 0.679002 ATGCAGGTACAGGCTTGCTG 60.679 55.000 9.32 0.00 41.29 4.41
4747 5025 0.038744 AATGCAGGTACAGGCTTGCT 59.961 50.000 9.32 0.00 41.29 3.91
4748 5026 0.171903 CAATGCAGGTACAGGCTTGC 59.828 55.000 9.08 1.19 41.13 4.01
4749 5027 0.171903 GCAATGCAGGTACAGGCTTG 59.828 55.000 0.00 0.00 0.00 4.01
4750 5028 0.251297 TGCAATGCAGGTACAGGCTT 60.251 50.000 2.72 0.93 33.32 4.35
4751 5029 0.962356 GTGCAATGCAGGTACAGGCT 60.962 55.000 8.73 0.00 40.08 4.58
4752 5030 1.243342 TGTGCAATGCAGGTACAGGC 61.243 55.000 8.73 0.00 40.08 4.85
4753 5031 0.523072 GTGTGCAATGCAGGTACAGG 59.477 55.000 8.73 0.00 40.08 4.00
4754 5032 1.069022 GTGTGTGCAATGCAGGTACAG 60.069 52.381 8.73 0.00 40.08 2.74
4755 5033 0.950836 GTGTGTGCAATGCAGGTACA 59.049 50.000 8.73 11.80 40.08 2.90
4756 5034 0.110238 CGTGTGTGCAATGCAGGTAC 60.110 55.000 8.73 9.15 40.08 3.34
4757 5035 1.851021 GCGTGTGTGCAATGCAGGTA 61.851 55.000 8.73 0.00 40.08 3.08
4758 5036 3.033184 CGTGTGTGCAATGCAGGT 58.967 55.556 8.73 0.00 40.08 4.00
4759 5037 2.429571 GCGTGTGTGCAATGCAGG 60.430 61.111 8.73 0.00 40.08 4.85
4760 5038 2.332159 TGCGTGTGTGCAATGCAG 59.668 55.556 8.73 0.00 43.02 4.41
4767 5045 1.291184 TACTCAGCATGCGTGTGTGC 61.291 55.000 23.22 0.00 33.43 4.57
4768 5046 1.147473 TTACTCAGCATGCGTGTGTG 58.853 50.000 23.22 15.95 33.43 3.82
4769 5047 1.877637 TTTACTCAGCATGCGTGTGT 58.122 45.000 13.01 18.02 33.43 3.72
4770 5048 2.476686 CCATTTACTCAGCATGCGTGTG 60.477 50.000 13.01 13.56 33.43 3.82
4771 5049 1.739466 CCATTTACTCAGCATGCGTGT 59.261 47.619 13.01 15.53 33.43 4.49
4772 5050 2.009051 TCCATTTACTCAGCATGCGTG 58.991 47.619 13.01 11.17 33.43 5.34
4773 5051 2.009774 GTCCATTTACTCAGCATGCGT 58.990 47.619 13.01 7.01 37.94 5.24
4774 5052 2.009051 TGTCCATTTACTCAGCATGCG 58.991 47.619 13.01 7.64 34.76 4.73
4775 5053 4.644103 ATTGTCCATTTACTCAGCATGC 57.356 40.909 10.51 10.51 34.76 4.06
4776 5054 7.201376 CGAAAAATTGTCCATTTACTCAGCATG 60.201 37.037 0.00 0.00 33.60 4.06
4777 5055 6.808212 CGAAAAATTGTCCATTTACTCAGCAT 59.192 34.615 0.00 0.00 33.60 3.79
4778 5056 6.016693 TCGAAAAATTGTCCATTTACTCAGCA 60.017 34.615 0.00 0.00 33.60 4.41
4779 5057 6.378582 TCGAAAAATTGTCCATTTACTCAGC 58.621 36.000 0.00 0.00 33.60 4.26
4780 5058 8.970691 AATCGAAAAATTGTCCATTTACTCAG 57.029 30.769 0.00 0.00 33.60 3.35
4781 5059 9.834628 GTAATCGAAAAATTGTCCATTTACTCA 57.165 29.630 0.00 0.00 33.60 3.41
4789 5067 9.849166 GGATTAAAGTAATCGAAAAATTGTCCA 57.151 29.630 0.00 0.00 44.24 4.02
4790 5068 9.849166 TGGATTAAAGTAATCGAAAAATTGTCC 57.151 29.630 0.00 0.00 44.24 4.02
4811 5089 9.664332 GTCATGCTAGTGATTTATCTATGGATT 57.336 33.333 0.00 0.00 33.71 3.01
4812 5090 8.819845 TGTCATGCTAGTGATTTATCTATGGAT 58.180 33.333 0.00 0.00 36.07 3.41
4813 5091 8.193953 TGTCATGCTAGTGATTTATCTATGGA 57.806 34.615 0.00 0.00 0.00 3.41
4814 5092 9.445878 AATGTCATGCTAGTGATTTATCTATGG 57.554 33.333 0.00 0.00 0.00 2.74
4817 5095 9.481340 GTCAATGTCATGCTAGTGATTTATCTA 57.519 33.333 3.23 0.00 0.00 1.98
4818 5096 8.209584 AGTCAATGTCATGCTAGTGATTTATCT 58.790 33.333 3.23 0.00 0.00 1.98
4819 5097 8.281194 CAGTCAATGTCATGCTAGTGATTTATC 58.719 37.037 3.23 0.00 0.00 1.75
4820 5098 7.989170 TCAGTCAATGTCATGCTAGTGATTTAT 59.011 33.333 3.23 0.00 0.00 1.40
4821 5099 7.330262 TCAGTCAATGTCATGCTAGTGATTTA 58.670 34.615 3.23 0.00 0.00 1.40
4822 5100 6.175471 TCAGTCAATGTCATGCTAGTGATTT 58.825 36.000 3.23 0.00 0.00 2.17
4823 5101 5.737860 TCAGTCAATGTCATGCTAGTGATT 58.262 37.500 3.23 0.00 0.00 2.57
4824 5102 5.349061 TCAGTCAATGTCATGCTAGTGAT 57.651 39.130 3.23 0.00 0.00 3.06
4825 5103 4.806640 TCAGTCAATGTCATGCTAGTGA 57.193 40.909 0.00 0.00 0.00 3.41
4826 5104 6.432607 AATTCAGTCAATGTCATGCTAGTG 57.567 37.500 0.00 0.00 0.00 2.74
4827 5105 7.201556 CGTTAATTCAGTCAATGTCATGCTAGT 60.202 37.037 0.00 0.00 0.00 2.57
4828 5106 7.010460 TCGTTAATTCAGTCAATGTCATGCTAG 59.990 37.037 0.00 0.00 0.00 3.42
4829 5107 6.816140 TCGTTAATTCAGTCAATGTCATGCTA 59.184 34.615 0.00 0.00 0.00 3.49
4830 5108 5.643348 TCGTTAATTCAGTCAATGTCATGCT 59.357 36.000 0.00 0.00 0.00 3.79
4831 5109 5.734498 GTCGTTAATTCAGTCAATGTCATGC 59.266 40.000 0.00 0.00 0.00 4.06
4832 5110 6.830736 TGTCGTTAATTCAGTCAATGTCATG 58.169 36.000 0.00 0.00 0.00 3.07
4833 5111 7.615582 ATGTCGTTAATTCAGTCAATGTCAT 57.384 32.000 0.00 0.00 0.00 3.06
4834 5112 8.716646 ATATGTCGTTAATTCAGTCAATGTCA 57.283 30.769 0.00 0.00 0.00 3.58
4835 5113 7.998767 CGATATGTCGTTAATTCAGTCAATGTC 59.001 37.037 3.37 0.00 42.78 3.06
4836 5114 7.841486 CGATATGTCGTTAATTCAGTCAATGT 58.159 34.615 3.37 0.00 42.78 2.71
4853 5131 8.012241 GCTTGGTTAGATCAAAATCGATATGTC 58.988 37.037 0.00 2.63 36.97 3.06
4854 5132 7.498900 TGCTTGGTTAGATCAAAATCGATATGT 59.501 33.333 0.00 0.00 36.97 2.29
4855 5133 7.864686 TGCTTGGTTAGATCAAAATCGATATG 58.135 34.615 0.00 1.13 36.97 1.78
4856 5134 8.509690 CATGCTTGGTTAGATCAAAATCGATAT 58.490 33.333 0.00 0.00 36.97 1.63
4857 5135 7.498900 ACATGCTTGGTTAGATCAAAATCGATA 59.501 33.333 0.00 0.00 36.97 2.92
4858 5136 6.319658 ACATGCTTGGTTAGATCAAAATCGAT 59.680 34.615 4.44 0.00 36.97 3.59
4859 5137 5.647658 ACATGCTTGGTTAGATCAAAATCGA 59.352 36.000 4.44 0.00 36.97 3.59
4860 5138 5.883661 ACATGCTTGGTTAGATCAAAATCG 58.116 37.500 4.44 0.00 36.97 3.34
4861 5139 7.989826 AGTACATGCTTGGTTAGATCAAAATC 58.010 34.615 4.44 0.00 0.00 2.17
4862 5140 7.944729 AGTACATGCTTGGTTAGATCAAAAT 57.055 32.000 4.44 0.00 0.00 1.82
4863 5141 7.064134 CGTAGTACATGCTTGGTTAGATCAAAA 59.936 37.037 4.44 0.00 0.00 2.44
4864 5142 6.533723 CGTAGTACATGCTTGGTTAGATCAAA 59.466 38.462 4.44 0.00 0.00 2.69
4865 5143 6.040247 CGTAGTACATGCTTGGTTAGATCAA 58.960 40.000 4.44 0.00 0.00 2.57
4866 5144 5.588240 CGTAGTACATGCTTGGTTAGATCA 58.412 41.667 4.44 0.00 0.00 2.92
4867 5145 4.444720 GCGTAGTACATGCTTGGTTAGATC 59.555 45.833 4.44 0.00 36.15 2.75
4868 5146 4.142026 TGCGTAGTACATGCTTGGTTAGAT 60.142 41.667 4.44 0.00 40.09 1.98
4869 5147 3.193903 TGCGTAGTACATGCTTGGTTAGA 59.806 43.478 4.44 0.00 40.09 2.10
4870 5148 3.517602 TGCGTAGTACATGCTTGGTTAG 58.482 45.455 4.44 0.00 40.09 2.34
4871 5149 3.596310 TGCGTAGTACATGCTTGGTTA 57.404 42.857 4.44 0.00 40.09 2.85
4872 5150 2.465860 TGCGTAGTACATGCTTGGTT 57.534 45.000 4.44 0.00 40.09 3.67
4873 5151 2.465860 TTGCGTAGTACATGCTTGGT 57.534 45.000 4.44 0.00 40.09 3.67
4874 5152 2.482336 TGTTTGCGTAGTACATGCTTGG 59.518 45.455 4.44 0.00 40.09 3.61
4875 5153 3.186409 ACTGTTTGCGTAGTACATGCTTG 59.814 43.478 0.38 0.00 40.09 4.01
4876 5154 3.399330 ACTGTTTGCGTAGTACATGCTT 58.601 40.909 0.38 0.00 40.09 3.91
4877 5155 3.040147 ACTGTTTGCGTAGTACATGCT 57.960 42.857 0.38 0.00 40.09 3.79
4878 5156 4.031426 GTCTACTGTTTGCGTAGTACATGC 59.969 45.833 0.38 0.00 39.82 4.06
4879 5157 5.158494 TGTCTACTGTTTGCGTAGTACATG 58.842 41.667 0.38 0.00 36.57 3.21
4880 5158 5.381174 TGTCTACTGTTTGCGTAGTACAT 57.619 39.130 0.38 0.00 36.57 2.29
4881 5159 4.834357 TGTCTACTGTTTGCGTAGTACA 57.166 40.909 0.38 0.00 36.57 2.90
4882 5160 7.416022 AGATATGTCTACTGTTTGCGTAGTAC 58.584 38.462 0.00 0.00 36.57 2.73
4883 5161 7.563888 AGATATGTCTACTGTTTGCGTAGTA 57.436 36.000 0.00 0.00 36.57 1.82
4884 5162 6.452494 AGATATGTCTACTGTTTGCGTAGT 57.548 37.500 0.00 0.00 36.57 2.73
4892 5170 8.353684 GCAGTATGTGTAGATATGTCTACTGTT 58.646 37.037 24.68 14.16 45.92 3.16
4893 5171 7.721842 AGCAGTATGTGTAGATATGTCTACTGT 59.278 37.037 24.68 15.20 45.92 3.55
4894 5172 8.105097 AGCAGTATGTGTAGATATGTCTACTG 57.895 38.462 24.68 17.94 45.92 2.74
4895 5173 9.794719 TTAGCAGTATGTGTAGATATGTCTACT 57.205 33.333 24.68 11.60 45.92 2.57
4901 5179 9.295214 GCAGTATTAGCAGTATGTGTAGATATG 57.705 37.037 0.00 0.00 39.31 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.