Multiple sequence alignment - TraesCS1A01G075200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G075200 chr1A 100.000 5128 0 0 1 5128 58286902 58292029 0.000000e+00 9470.0
1 TraesCS1A01G075200 chr1A 79.482 502 92 7 1296 1787 1175077 1175577 3.800000e-91 346.0
2 TraesCS1A01G075200 chr1A 95.349 86 4 0 3230 3315 58290096 58290181 2.490000e-28 137.0
3 TraesCS1A01G075200 chr1A 95.349 86 4 0 3195 3280 58290131 58290216 2.490000e-28 137.0
4 TraesCS1A01G075200 chr1A 87.603 121 11 3 2695 2813 143819223 143819105 2.490000e-28 137.0
5 TraesCS1A01G075200 chr1D 95.739 1197 41 7 2127 3315 59878525 59879719 0.000000e+00 1919.0
6 TraesCS1A01G075200 chr1D 92.685 1285 69 9 882 2144 59876275 59877556 0.000000e+00 1829.0
7 TraesCS1A01G075200 chr1D 91.026 1014 78 9 882 1889 59836061 59837067 0.000000e+00 1356.0
8 TraesCS1A01G075200 chr1D 93.265 876 48 6 3 872 319517314 319516444 0.000000e+00 1280.0
9 TraesCS1A01G075200 chr1D 92.742 868 53 5 1 863 279519282 279520144 0.000000e+00 1245.0
10 TraesCS1A01G075200 chr1D 95.285 615 28 1 3195 3809 59879634 59880247 0.000000e+00 974.0
11 TraesCS1A01G075200 chr1D 84.676 633 67 17 2199 2820 59837422 59838035 5.680000e-169 604.0
12 TraesCS1A01G075200 chr1D 93.059 389 17 3 3845 4233 59880442 59880820 1.250000e-155 560.0
13 TraesCS1A01G075200 chr1D 78.679 530 95 16 1296 1811 2092567 2093092 2.290000e-88 337.0
14 TraesCS1A01G075200 chr1D 87.379 206 22 3 1894 2099 59837224 59837425 3.090000e-57 233.0
15 TraesCS1A01G075200 chr1D 92.405 158 11 1 4246 4403 59928615 59928771 1.860000e-54 224.0
16 TraesCS1A01G075200 chr1D 82.869 251 31 9 3825 4074 59838635 59838874 1.120000e-51 215.0
17 TraesCS1A01G075200 chr1D 89.157 166 18 0 3661 3826 469874707 469874872 1.870000e-49 207.0
18 TraesCS1A01G075200 chr1D 87.597 129 13 2 5001 5128 164852493 164852619 4.140000e-31 147.0
19 TraesCS1A01G075200 chr1D 88.430 121 11 2 2695 2813 145941696 145941577 5.350000e-30 143.0
20 TraesCS1A01G075200 chr1D 93.182 88 6 0 3441 3528 448689979 448689892 4.170000e-26 130.0
21 TraesCS1A01G075200 chr4D 92.940 864 50 7 1 858 132949053 132949911 0.000000e+00 1247.0
22 TraesCS1A01G075200 chr4D 96.000 100 4 0 2816 2915 238299986 238299887 4.110000e-36 163.0
23 TraesCS1A01G075200 chr4D 95.098 102 5 0 2814 2915 498045869 498045970 1.480000e-35 161.0
24 TraesCS1A01G075200 chr4D 93.519 108 5 2 2809 2915 12354804 12354698 5.310000e-35 159.0
25 TraesCS1A01G075200 chr7D 92.229 875 55 5 3 872 62129928 62129062 0.000000e+00 1227.0
26 TraesCS1A01G075200 chr7D 91.959 883 57 6 1 876 117521238 117520363 0.000000e+00 1225.0
27 TraesCS1A01G075200 chr7D 91.908 865 58 7 1 858 229783223 229784082 0.000000e+00 1199.0
28 TraesCS1A01G075200 chr7D 78.016 514 78 20 1296 1794 571872596 571872103 1.810000e-74 291.0
29 TraesCS1A01G075200 chr7D 88.957 163 18 0 3660 3822 484298905 484299067 8.710000e-48 202.0
30 TraesCS1A01G075200 chr7D 93.519 108 6 1 2808 2915 614654825 614654931 5.310000e-35 159.0
31 TraesCS1A01G075200 chr7D 85.156 128 15 3 2682 2807 71339774 71339649 1.500000e-25 128.0
32 TraesCS1A01G075200 chr7D 100.000 30 0 0 2625 2654 629192118 629192089 7.170000e-04 56.5
33 TraesCS1A01G075200 chr3D 92.211 873 55 5 1 867 327438117 327438982 0.000000e+00 1223.0
34 TraesCS1A01G075200 chr3D 92.451 861 48 6 3 858 378028973 378029821 0.000000e+00 1214.0
35 TraesCS1A01G075200 chr3D 90.361 166 16 0 3663 3828 357158465 357158630 8.640000e-53 219.0
36 TraesCS1A01G075200 chr3D 91.398 93 6 2 3441 3533 143250804 143250714 5.390000e-25 126.0
37 TraesCS1A01G075200 chr3D 83.898 118 16 2 2682 2797 107075517 107075633 5.430000e-20 110.0
38 TraesCS1A01G075200 chrUn 91.753 873 57 9 1 867 121738808 121739671 0.000000e+00 1199.0
39 TraesCS1A01G075200 chrUn 90.000 160 15 1 3663 3822 391827282 391827440 6.730000e-49 206.0
40 TraesCS1A01G075200 chr1B 82.598 816 56 32 3824 4566 95302341 95303143 4.330000e-180 641.0
41 TraesCS1A01G075200 chr1B 80.438 685 97 22 930 1586 95297547 95298222 5.970000e-134 488.0
42 TraesCS1A01G075200 chr1B 91.954 87 1 1 4913 4999 95303218 95303298 3.240000e-22 117.0
43 TraesCS1A01G075200 chr7B 77.457 519 85 23 1296 1794 628460568 628460062 1.090000e-71 281.0
44 TraesCS1A01G075200 chr7B 97.196 107 1 1 5024 5128 677531894 677531788 4.080000e-41 180.0
45 TraesCS1A01G075200 chr7B 87.387 111 12 2 2694 2803 297400536 297400645 5.390000e-25 126.0
46 TraesCS1A01G075200 chr3B 85.401 274 25 12 2914 3184 240793670 240793931 2.350000e-68 270.0
47 TraesCS1A01G075200 chr3B 90.625 160 14 1 3663 3822 458417562 458417720 1.450000e-50 211.0
48 TraesCS1A01G075200 chr3B 90.000 160 15 1 3663 3822 458437926 458438084 6.730000e-49 206.0
49 TraesCS1A01G075200 chr3B 97.479 119 2 1 5010 5128 51769545 51769428 8.710000e-48 202.0
50 TraesCS1A01G075200 chr3B 97.938 97 2 0 5032 5128 430923720 430923816 8.830000e-38 169.0
51 TraesCS1A01G075200 chr3B 90.625 96 5 3 3431 3525 741580444 741580536 1.940000e-24 124.0
52 TraesCS1A01G075200 chr3B 95.122 41 2 0 2628 2668 335845824 335845784 1.190000e-06 65.8
53 TraesCS1A01G075200 chr7A 75.918 490 85 20 1296 1765 661160203 661159727 2.400000e-53 220.0
54 TraesCS1A01G075200 chr7A 96.000 100 4 0 2819 2918 205167860 205167761 4.110000e-36 163.0
55 TraesCS1A01G075200 chr7A 92.632 95 7 0 3431 3525 290919942 290920036 2.490000e-28 137.0
56 TraesCS1A01G075200 chr7A 86.486 111 13 2 2694 2803 391906693 391906584 2.510000e-23 121.0
57 TraesCS1A01G075200 chr5D 88.068 176 20 1 3660 3834 115020719 115020544 1.870000e-49 207.0
58 TraesCS1A01G075200 chr5D 93.182 88 6 0 3438 3525 135662895 135662808 4.170000e-26 130.0
59 TraesCS1A01G075200 chr5B 89.091 165 18 0 3660 3824 112531422 112531586 6.730000e-49 206.0
60 TraesCS1A01G075200 chr5B 99.048 105 1 0 5024 5128 686452437 686452333 6.780000e-44 189.0
61 TraesCS1A01G075200 chr5B 81.633 196 21 9 2629 2813 328373751 328373942 1.150000e-31 148.0
62 TraesCS1A01G075200 chr6A 99.048 105 1 0 5024 5128 86393197 86393301 6.780000e-44 189.0
63 TraesCS1A01G075200 chr2B 98.095 105 2 0 5024 5128 782975458 782975562 3.150000e-42 183.0
64 TraesCS1A01G075200 chr2B 98.095 105 2 0 5024 5128 782990427 782990531 3.150000e-42 183.0
65 TraesCS1A01G075200 chr2B 97.143 105 3 0 5024 5128 782850971 782851075 1.470000e-40 178.0
66 TraesCS1A01G075200 chr2A 97.938 97 2 0 2819 2915 68155920 68155824 8.830000e-38 169.0
67 TraesCS1A01G075200 chr2A 92.135 89 5 2 2718 2804 29150948 29151036 1.940000e-24 124.0
68 TraesCS1A01G075200 chr6D 92.793 111 8 0 2814 2924 200398709 200398819 1.480000e-35 161.0
69 TraesCS1A01G075200 chr4A 88.060 134 13 3 1909 2041 536888963 536888832 6.870000e-34 156.0
70 TraesCS1A01G075200 chr4A 94.253 87 5 0 3439 3525 704528116 704528202 3.220000e-27 134.0
71 TraesCS1A01G075200 chr6B 91.304 115 7 3 2819 2932 160912386 160912498 2.470000e-33 154.0
72 TraesCS1A01G075200 chr5A 90.196 102 8 2 3438 3537 647484981 647485082 1.160000e-26 132.0
73 TraesCS1A01G075200 chr3A 90.722 97 9 0 3439 3535 58929426 58929330 4.170000e-26 130.0
74 TraesCS1A01G075200 chr3A 95.122 41 2 0 2628 2668 325297170 325297130 1.190000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G075200 chr1A 58286902 58292029 5127 False 3248.0 9470 96.899333 1 5128 3 chr1A.!!$F2 5127
1 TraesCS1A01G075200 chr1A 1175077 1175577 500 False 346.0 346 79.482000 1296 1787 1 chr1A.!!$F1 491
2 TraesCS1A01G075200 chr1D 59876275 59880820 4545 False 1320.5 1919 94.192000 882 4233 4 chr1D.!!$F7 3351
3 TraesCS1A01G075200 chr1D 319516444 319517314 870 True 1280.0 1280 93.265000 3 872 1 chr1D.!!$R2 869
4 TraesCS1A01G075200 chr1D 279519282 279520144 862 False 1245.0 1245 92.742000 1 863 1 chr1D.!!$F4 862
5 TraesCS1A01G075200 chr1D 59836061 59838874 2813 False 602.0 1356 86.487500 882 4074 4 chr1D.!!$F6 3192
6 TraesCS1A01G075200 chr1D 2092567 2093092 525 False 337.0 337 78.679000 1296 1811 1 chr1D.!!$F1 515
7 TraesCS1A01G075200 chr4D 132949053 132949911 858 False 1247.0 1247 92.940000 1 858 1 chr4D.!!$F1 857
8 TraesCS1A01G075200 chr7D 62129062 62129928 866 True 1227.0 1227 92.229000 3 872 1 chr7D.!!$R1 869
9 TraesCS1A01G075200 chr7D 117520363 117521238 875 True 1225.0 1225 91.959000 1 876 1 chr7D.!!$R3 875
10 TraesCS1A01G075200 chr7D 229783223 229784082 859 False 1199.0 1199 91.908000 1 858 1 chr7D.!!$F1 857
11 TraesCS1A01G075200 chr3D 327438117 327438982 865 False 1223.0 1223 92.211000 1 867 1 chr3D.!!$F2 866
12 TraesCS1A01G075200 chr3D 378028973 378029821 848 False 1214.0 1214 92.451000 3 858 1 chr3D.!!$F4 855
13 TraesCS1A01G075200 chrUn 121738808 121739671 863 False 1199.0 1199 91.753000 1 867 1 chrUn.!!$F1 866
14 TraesCS1A01G075200 chr1B 95297547 95298222 675 False 488.0 488 80.438000 930 1586 1 chr1B.!!$F1 656
15 TraesCS1A01G075200 chr1B 95302341 95303298 957 False 379.0 641 87.276000 3824 4999 2 chr1B.!!$F2 1175
16 TraesCS1A01G075200 chr7B 628460062 628460568 506 True 281.0 281 77.457000 1296 1794 1 chr7B.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 896 0.471022 GGGGGAGAGAGGAGATGACC 60.471 65.000 0.0 0.0 0.00 4.02 F
1372 1419 1.160137 CGGTGAAGCTTTTCCTGGAG 58.840 55.000 0.0 0.0 0.00 3.86 F
2041 2278 1.703438 GCGGTGAGCTTGCTGAGATG 61.703 60.000 0.0 0.0 44.04 2.90 F
2950 4182 1.529309 GAATGGAGGGACAGGGAGC 59.471 63.158 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 3629 1.804748 GCAGGTTCCCACGTTTCTAAG 59.195 52.381 0.00 0.00 0.0 2.18 R
2950 4182 0.813610 TTCCACGGCGCCAATCTATG 60.814 55.000 28.98 10.77 0.0 2.23 R
3817 5105 0.404426 AGAACCAACACTTAGGCCCC 59.596 55.000 0.00 0.00 0.0 5.80 R
4754 6325 0.040204 AATAGGGTTGCTGGCTTGCT 59.960 50.000 4.89 0.00 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.889105 ATCATCACACGCCCATCGC 60.889 57.895 0.00 0.00 43.23 4.58
77 78 2.587194 CTTCTCCATGCCGCCGAG 60.587 66.667 0.00 0.00 0.00 4.63
78 79 3.376935 CTTCTCCATGCCGCCGAGT 62.377 63.158 0.00 0.00 0.00 4.18
79 80 3.371097 TTCTCCATGCCGCCGAGTC 62.371 63.158 0.00 0.00 0.00 3.36
110 111 1.729470 ATCGACGCGAGAGAAGGCAT 61.729 55.000 15.93 0.00 39.91 4.40
230 232 2.972713 TGATCTTAGGATTTCTCCCGGG 59.027 50.000 16.85 16.85 43.21 5.73
322 324 3.604629 CTCCATGACCGGAGTCGT 58.395 61.111 9.46 0.00 46.48 4.34
330 332 2.250841 GACCGGAGTCGTCTCGGTTC 62.251 65.000 20.09 11.54 42.68 3.62
357 359 1.207329 GCGACTATGTCTCCCCAACTT 59.793 52.381 0.00 0.00 0.00 2.66
374 376 1.225855 CTTGCCGCCGATGCTAATAA 58.774 50.000 0.00 0.00 34.43 1.40
432 434 1.674057 CTTCGGTGGAGAAGGCAGT 59.326 57.895 0.00 0.00 42.78 4.40
538 546 2.034879 CGCAACCGCAGTGGATCTT 61.035 57.895 7.13 0.00 42.00 2.40
548 556 4.437239 CGCAGTGGATCTTGATCTAAACT 58.563 43.478 10.03 8.68 0.00 2.66
557 565 2.160721 TGATCTAAACTCCTCGGGCT 57.839 50.000 0.00 0.00 0.00 5.19
563 571 1.280457 AAACTCCTCGGGCTCAGATT 58.720 50.000 0.00 0.00 0.00 2.40
575 583 3.119173 GGGCTCAGATTAGATCTCATCGG 60.119 52.174 10.53 10.22 37.58 4.18
598 607 2.159057 GCCAAAATCTCATCCGCCAAAT 60.159 45.455 0.00 0.00 0.00 2.32
612 621 1.227823 CAAATGGCCGCCGGAGATA 60.228 57.895 7.68 0.00 0.00 1.98
797 814 0.699231 GATGGAGGGGGAGGGTTGAT 60.699 60.000 0.00 0.00 0.00 2.57
874 891 4.144727 GCCGGGGGAGAGAGGAGA 62.145 72.222 2.18 0.00 0.00 3.71
875 892 2.939298 CCGGGGGAGAGAGGAGAT 59.061 66.667 0.00 0.00 0.00 2.75
876 893 1.532794 CCGGGGGAGAGAGGAGATG 60.533 68.421 0.00 0.00 0.00 2.90
877 894 1.539165 CGGGGGAGAGAGGAGATGA 59.461 63.158 0.00 0.00 0.00 2.92
878 895 0.825840 CGGGGGAGAGAGGAGATGAC 60.826 65.000 0.00 0.00 0.00 3.06
879 896 0.471022 GGGGGAGAGAGGAGATGACC 60.471 65.000 0.00 0.00 0.00 4.02
880 897 0.471022 GGGGAGAGAGGAGATGACCC 60.471 65.000 0.00 0.00 35.60 4.46
926 943 4.081476 AGTGAAAAAGTGAAGCAAAGCCTT 60.081 37.500 0.00 0.00 0.00 4.35
951 968 6.372931 TGAATTATTGCTTAAGCCCACCTAT 58.627 36.000 24.30 10.32 41.18 2.57
952 969 6.838612 TGAATTATTGCTTAAGCCCACCTATT 59.161 34.615 24.30 14.97 41.18 1.73
1009 1027 1.973281 AGTTTGGCCATGGCTCACG 60.973 57.895 34.70 0.00 41.60 4.35
1285 1332 6.229733 AGGAGCATATCAGAAAACATAGAGC 58.770 40.000 0.00 0.00 0.00 4.09
1353 1400 2.644676 GTGGAAGGGCTAAGAATCACC 58.355 52.381 0.00 0.00 0.00 4.02
1372 1419 1.160137 CGGTGAAGCTTTTCCTGGAG 58.840 55.000 0.00 0.00 0.00 3.86
1422 1469 2.192861 CGGGACCACAAGCTGCAAA 61.193 57.895 1.02 0.00 0.00 3.68
1471 1518 9.725019 TGTTTCAACATATTCTGACATTCTACT 57.275 29.630 0.00 0.00 33.17 2.57
1481 1528 7.849804 TTCTGACATTCTACTAAATTCCTGC 57.150 36.000 0.00 0.00 0.00 4.85
1501 1559 2.475487 GCGTTTCTGAGTCCTGTACAAC 59.525 50.000 0.00 0.00 0.00 3.32
1619 1690 5.012561 CCACTAGATGCTAGGAGGCTTTTAT 59.987 44.000 0.00 0.00 0.00 1.40
1798 1883 2.614520 TCTCGTCTGACCATTCTCGATC 59.385 50.000 1.55 0.00 0.00 3.69
2041 2278 1.703438 GCGGTGAGCTTGCTGAGATG 61.703 60.000 0.00 0.00 44.04 2.90
2171 3394 8.344831 TCTCGAATAATGTTAATTCTGCAATGG 58.655 33.333 0.00 0.00 0.00 3.16
2188 3411 4.727448 GCAATGGTTTTGTTTGAGTGCAAC 60.727 41.667 0.00 0.00 32.79 4.17
2255 3483 3.708403 ATCTGTGCAGATCCTGAAACA 57.292 42.857 8.74 1.29 44.37 2.83
2315 3543 3.190874 GTCTTATGAAGTCCTTCTGCCG 58.809 50.000 8.40 0.00 40.14 5.69
2400 3629 1.886886 TAACTTTGCAGGTTCCGGTC 58.113 50.000 0.00 0.00 0.00 4.79
2526 3755 8.939929 CAATACATGGCTGTATGTTTCCTATAG 58.060 37.037 0.00 0.00 45.73 1.31
2673 3905 2.602257 AGGTCTTGCTTTGTTTTGGC 57.398 45.000 0.00 0.00 0.00 4.52
2678 3910 4.122046 GTCTTGCTTTGTTTTGGCTCAAT 58.878 39.130 0.00 0.00 0.00 2.57
2846 4078 4.697352 CCTCTGTCCCAAAATAAGTGTCTG 59.303 45.833 0.00 0.00 0.00 3.51
2950 4182 1.529309 GAATGGAGGGACAGGGAGC 59.471 63.158 0.00 0.00 0.00 4.70
3066 4298 3.996150 ATGACTTGTCAAGTTTGCAGG 57.004 42.857 19.09 0.00 43.03 4.85
3154 4388 8.424918 TGCATTATTTACTTTTGGGTTCTCAAA 58.575 29.630 0.00 0.00 35.15 2.69
3193 4427 2.206815 TTGTCTTGTTGTGCATGCAC 57.793 45.000 38.00 38.00 46.33 4.57
3216 4450 7.518052 GCACAGATGACAACTAATCTAGCATTC 60.518 40.741 0.00 0.00 35.16 2.67
3234 4503 5.047519 AGCATTCCTCACAAAATGAAGAAGG 60.048 40.000 0.00 0.00 40.37 3.46
3258 4527 5.586243 GCAACTAATCTAGCATTCCTCACAA 59.414 40.000 0.00 0.00 0.00 3.33
3269 4538 5.047519 AGCATTCCTCACAAAATGAAGAAGG 60.048 40.000 0.00 0.00 40.37 3.46
3297 4566 8.443953 ACTAATCTAGCATTCCTCACAAAATC 57.556 34.615 0.00 0.00 0.00 2.17
3463 4738 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
3467 4742 4.322801 CCCTCCGTCCCACAATATAAGATC 60.323 50.000 0.00 0.00 0.00 2.75
3468 4743 4.283467 CCTCCGTCCCACAATATAAGATCA 59.717 45.833 0.00 0.00 0.00 2.92
3556 4831 5.468072 ACATAATCTGAATTCGATGGTCTGC 59.532 40.000 11.71 0.00 0.00 4.26
3614 4889 4.392047 TCATCATTGTTTGTGTCTCTGCT 58.608 39.130 0.00 0.00 0.00 4.24
3674 4962 3.130734 AGGTACTAAGGGCCTGATTGA 57.869 47.619 6.92 0.00 36.02 2.57
3689 4977 5.050159 GCCTGATTGAATTGTTGTTTTCCAC 60.050 40.000 0.00 0.00 0.00 4.02
3724 5012 7.038302 ACCTGTAAAAGATACAGACCTCAATCA 60.038 37.037 15.31 0.00 45.69 2.57
3728 5016 4.909696 AGATACAGACCTCAATCAGTCG 57.090 45.455 0.00 0.00 38.08 4.18
3729 5017 4.274147 AGATACAGACCTCAATCAGTCGT 58.726 43.478 0.00 0.00 38.08 4.34
3740 5028 5.090652 TCAATCAGTCGTTTTCTTTTCCG 57.909 39.130 0.00 0.00 0.00 4.30
3809 5097 5.232347 ACAGGTGTATAAATCTACCCCCAT 58.768 41.667 0.00 0.00 33.67 4.00
3810 5098 5.674958 ACAGGTGTATAAATCTACCCCCATT 59.325 40.000 0.00 0.00 33.67 3.16
3811 5099 6.183361 ACAGGTGTATAAATCTACCCCCATTC 60.183 42.308 0.00 0.00 33.67 2.67
3812 5100 5.312443 AGGTGTATAAATCTACCCCCATTCC 59.688 44.000 0.00 0.00 33.67 3.01
3813 5101 5.073965 GGTGTATAAATCTACCCCCATTCCA 59.926 44.000 0.00 0.00 0.00 3.53
3814 5102 6.411086 GGTGTATAAATCTACCCCCATTCCAA 60.411 42.308 0.00 0.00 0.00 3.53
3815 5103 6.715264 GTGTATAAATCTACCCCCATTCCAAG 59.285 42.308 0.00 0.00 0.00 3.61
3816 5104 2.755952 AATCTACCCCCATTCCAAGC 57.244 50.000 0.00 0.00 0.00 4.01
3817 5105 0.474184 ATCTACCCCCATTCCAAGCG 59.526 55.000 0.00 0.00 0.00 4.68
3818 5106 1.152963 CTACCCCCATTCCAAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
3819 5107 2.624674 CTACCCCCATTCCAAGCGGG 62.625 65.000 0.00 0.00 39.92 6.13
3906 5353 0.537188 AGGATGCAGGTACGAGTTGG 59.463 55.000 0.00 0.00 0.00 3.77
3950 5397 1.003118 ACTGGCTTTGATTCGTGCCTA 59.997 47.619 13.10 2.96 45.11 3.93
3998 5447 6.535150 CACTGTCATGTGTTTTCGTAGGATAT 59.465 38.462 0.00 0.00 33.61 1.63
3999 5448 7.704899 CACTGTCATGTGTTTTCGTAGGATATA 59.295 37.037 0.00 0.00 33.61 0.86
4000 5449 8.421784 ACTGTCATGTGTTTTCGTAGGATATAT 58.578 33.333 0.00 0.00 0.00 0.86
4001 5450 9.908152 CTGTCATGTGTTTTCGTAGGATATATA 57.092 33.333 0.00 0.00 0.00 0.86
4035 5484 5.220739 GCAGTAGGAGCAATAAGTTCACATG 60.221 44.000 0.00 0.00 0.00 3.21
4114 5587 3.577313 GCGAAGATTGGGCGCCTC 61.577 66.667 28.56 16.77 44.55 4.70
4122 5612 4.659172 TGGGCGCCTCCAAGTTGG 62.659 66.667 28.56 16.36 39.43 3.77
4123 5613 4.344865 GGGCGCCTCCAAGTTGGA 62.345 66.667 28.56 23.23 45.98 3.53
4152 5642 0.404426 AGTAGAAGGTTGGGGTTGCC 59.596 55.000 0.00 0.00 0.00 4.52
4165 5655 6.381707 GGTTGGGGTTGCCTAAAGATATTTAA 59.618 38.462 0.00 0.00 0.00 1.52
4200 5690 3.631145 TCTTGTGTGCAGAATGAAAGC 57.369 42.857 0.00 0.00 39.69 3.51
4227 5717 5.482006 AGCTTTGGTTTCCTGCATTTTATC 58.518 37.500 0.00 0.00 0.00 1.75
4235 5725 6.430451 GTTTCCTGCATTTTATCGGTCTATG 58.570 40.000 0.00 0.00 0.00 2.23
4236 5726 4.065088 TCCTGCATTTTATCGGTCTATGC 58.935 43.478 0.00 0.00 41.39 3.14
4240 5740 4.821260 TGCATTTTATCGGTCTATGCATGT 59.179 37.500 10.16 0.00 44.59 3.21
4256 5756 1.539560 ATGTCTGTGTCTGCTCCGCT 61.540 55.000 0.00 0.00 0.00 5.52
4271 5771 3.494398 GCTCCGCTGTTAAGGATCCAATA 60.494 47.826 15.82 3.68 35.75 1.90
4274 5774 5.690865 TCCGCTGTTAAGGATCCAATATTT 58.309 37.500 15.82 1.01 0.00 1.40
4275 5775 5.530915 TCCGCTGTTAAGGATCCAATATTTG 59.469 40.000 15.82 0.00 0.00 2.32
4276 5776 5.299279 CCGCTGTTAAGGATCCAATATTTGT 59.701 40.000 15.82 0.00 0.00 2.83
4290 5790 7.227873 TCCAATATTTGTTGGTTACTGAGTGA 58.772 34.615 0.00 0.00 46.92 3.41
4311 5811 3.403038 AGATTGGAAAAGTGACCTGACG 58.597 45.455 0.00 0.00 0.00 4.35
4336 5837 1.724582 AAGTCGCTTGTGTTGTGCCC 61.725 55.000 0.00 0.00 0.00 5.36
4337 5838 2.186826 GTCGCTTGTGTTGTGCCCT 61.187 57.895 0.00 0.00 0.00 5.19
4339 5840 2.730094 GCTTGTGTTGTGCCCTGG 59.270 61.111 0.00 0.00 0.00 4.45
4341 5842 1.391157 GCTTGTGTTGTGCCCTGGAA 61.391 55.000 0.00 0.00 0.00 3.53
4342 5843 0.385390 CTTGTGTTGTGCCCTGGAAC 59.615 55.000 0.00 0.00 0.00 3.62
4343 5844 0.033601 TTGTGTTGTGCCCTGGAACT 60.034 50.000 0.00 0.00 0.00 3.01
4349 5853 2.814336 GTTGTGCCCTGGAACTAGAAAG 59.186 50.000 0.00 0.00 0.00 2.62
4350 5854 2.334977 TGTGCCCTGGAACTAGAAAGA 58.665 47.619 0.00 0.00 0.00 2.52
4411 5936 3.188786 GGCAGCGAGTTGGCTACG 61.189 66.667 6.27 0.00 42.53 3.51
4432 5957 2.887568 CGTGATGGAGACGGCAGC 60.888 66.667 0.00 0.00 33.08 5.25
4480 6008 2.829720 TCAATGGCTGTACTACCTCGTT 59.170 45.455 6.34 0.00 0.00 3.85
4516 6044 4.211125 TGTTCCCAAAGTTTGTATGCAGA 58.789 39.130 14.36 0.00 0.00 4.26
4527 6055 7.668525 AGTTTGTATGCAGAAACTAGTAACC 57.331 36.000 15.89 0.00 44.12 2.85
4533 6061 3.181459 TGCAGAAACTAGTAACCTGTGCA 60.181 43.478 15.84 14.07 36.11 4.57
4573 6101 2.292828 GCCATGGCCCATAGTAATGT 57.707 50.000 27.24 0.00 34.56 2.71
4574 6102 2.162681 GCCATGGCCCATAGTAATGTC 58.837 52.381 27.24 0.00 34.56 3.06
4575 6103 2.426522 CCATGGCCCATAGTAATGTCG 58.573 52.381 0.00 0.00 0.00 4.35
4593 6164 4.385405 GGTGCCGAGCTGCTGTCT 62.385 66.667 7.01 0.00 0.00 3.41
4594 6165 2.573869 GTGCCGAGCTGCTGTCTA 59.426 61.111 7.01 0.00 0.00 2.59
4595 6166 1.079819 GTGCCGAGCTGCTGTCTAA 60.080 57.895 7.01 0.00 0.00 2.10
4596 6167 1.079819 TGCCGAGCTGCTGTCTAAC 60.080 57.895 7.01 0.00 0.00 2.34
4597 6168 1.216710 GCCGAGCTGCTGTCTAACT 59.783 57.895 7.01 0.00 0.00 2.24
4598 6169 0.804156 GCCGAGCTGCTGTCTAACTC 60.804 60.000 7.01 0.00 0.00 3.01
4599 6170 2.937026 CGAGCTGCTGTCTAACTCG 58.063 57.895 7.01 0.00 43.46 4.18
4600 6171 0.169230 CGAGCTGCTGTCTAACTCGT 59.831 55.000 7.01 0.00 43.85 4.18
4601 6172 1.623359 GAGCTGCTGTCTAACTCGTG 58.377 55.000 7.01 0.00 0.00 4.35
4602 6173 0.962489 AGCTGCTGTCTAACTCGTGT 59.038 50.000 0.00 0.00 0.00 4.49
4603 6174 1.063806 GCTGCTGTCTAACTCGTGTG 58.936 55.000 0.00 0.00 0.00 3.82
4604 6175 1.335964 GCTGCTGTCTAACTCGTGTGA 60.336 52.381 0.00 0.00 0.00 3.58
4605 6176 2.672478 GCTGCTGTCTAACTCGTGTGAT 60.672 50.000 0.00 0.00 0.00 3.06
4606 6177 3.579709 CTGCTGTCTAACTCGTGTGATT 58.420 45.455 0.00 0.00 0.00 2.57
4607 6178 3.317150 TGCTGTCTAACTCGTGTGATTG 58.683 45.455 0.00 0.00 0.00 2.67
4608 6179 3.243737 TGCTGTCTAACTCGTGTGATTGT 60.244 43.478 0.00 0.00 0.00 2.71
4609 6180 4.022676 TGCTGTCTAACTCGTGTGATTGTA 60.023 41.667 0.00 0.00 0.00 2.41
4610 6181 4.921515 GCTGTCTAACTCGTGTGATTGTAA 59.078 41.667 0.00 0.00 0.00 2.41
4611 6182 5.061064 GCTGTCTAACTCGTGTGATTGTAAG 59.939 44.000 0.00 0.00 0.00 2.34
4612 6183 4.921515 TGTCTAACTCGTGTGATTGTAAGC 59.078 41.667 0.00 0.00 0.00 3.09
4613 6184 4.326548 GTCTAACTCGTGTGATTGTAAGCC 59.673 45.833 0.00 0.00 0.00 4.35
4614 6185 3.402628 AACTCGTGTGATTGTAAGCCT 57.597 42.857 0.00 0.00 0.00 4.58
4615 6186 2.688507 ACTCGTGTGATTGTAAGCCTG 58.311 47.619 0.00 0.00 0.00 4.85
4616 6187 2.037251 ACTCGTGTGATTGTAAGCCTGT 59.963 45.455 0.00 0.00 0.00 4.00
4617 6188 3.067106 CTCGTGTGATTGTAAGCCTGTT 58.933 45.455 0.00 0.00 0.00 3.16
4618 6189 3.472652 TCGTGTGATTGTAAGCCTGTTT 58.527 40.909 0.00 0.00 0.00 2.83
4619 6190 3.880490 TCGTGTGATTGTAAGCCTGTTTT 59.120 39.130 0.00 0.00 0.00 2.43
4620 6191 4.336993 TCGTGTGATTGTAAGCCTGTTTTT 59.663 37.500 0.00 0.00 0.00 1.94
4647 6218 9.057089 TCTAGCAAAGTTTTCTTCTTCTTTAGG 57.943 33.333 0.00 0.00 39.48 2.69
4648 6219 6.507900 AGCAAAGTTTTCTTCTTCTTTAGGC 58.492 36.000 0.00 0.00 39.48 3.93
4649 6220 5.692204 GCAAAGTTTTCTTCTTCTTTAGGCC 59.308 40.000 0.00 0.00 39.48 5.19
4650 6221 6.682861 GCAAAGTTTTCTTCTTCTTTAGGCCA 60.683 38.462 5.01 0.00 39.48 5.36
4651 6222 6.392625 AAGTTTTCTTCTTCTTTAGGCCAC 57.607 37.500 5.01 0.00 34.76 5.01
4652 6223 5.445964 AGTTTTCTTCTTCTTTAGGCCACA 58.554 37.500 5.01 0.00 0.00 4.17
4653 6224 5.891551 AGTTTTCTTCTTCTTTAGGCCACAA 59.108 36.000 5.01 0.00 0.00 3.33
4654 6225 6.551227 AGTTTTCTTCTTCTTTAGGCCACAAT 59.449 34.615 5.01 0.00 0.00 2.71
4655 6226 6.575162 TTTCTTCTTCTTTAGGCCACAATC 57.425 37.500 5.01 0.00 0.00 2.67
4656 6227 4.253685 TCTTCTTCTTTAGGCCACAATCG 58.746 43.478 5.01 0.00 0.00 3.34
4657 6228 2.356135 TCTTCTTTAGGCCACAATCGC 58.644 47.619 5.01 0.00 0.00 4.58
4663 6234 2.755469 GGCCACAATCGCCATGGT 60.755 61.111 14.67 0.00 46.27 3.55
4664 6235 2.350458 GGCCACAATCGCCATGGTT 61.350 57.895 14.67 0.00 46.27 3.67
4665 6236 1.153784 GCCACAATCGCCATGGTTG 60.154 57.895 14.67 12.59 35.79 3.77
4666 6237 1.153784 CCACAATCGCCATGGTTGC 60.154 57.895 14.67 0.00 0.00 4.17
4667 6238 1.597797 CCACAATCGCCATGGTTGCT 61.598 55.000 14.67 0.00 0.00 3.91
4668 6239 0.179156 CACAATCGCCATGGTTGCTC 60.179 55.000 14.67 0.00 0.00 4.26
4669 6240 1.315257 ACAATCGCCATGGTTGCTCC 61.315 55.000 14.67 0.00 0.00 4.70
4670 6241 2.114670 AATCGCCATGGTTGCTCCG 61.115 57.895 14.67 7.25 39.52 4.63
4673 6244 4.120331 GCCATGGTTGCTCCGCAC 62.120 66.667 14.67 0.00 38.71 5.34
4674 6245 3.803082 CCATGGTTGCTCCGCACG 61.803 66.667 2.57 0.00 38.71 5.34
4675 6246 3.803082 CATGGTTGCTCCGCACGG 61.803 66.667 1.73 1.73 38.71 4.94
4683 6254 4.394712 CTCCGCACGGCCCTTTCT 62.395 66.667 3.66 0.00 34.68 2.52
4684 6255 4.697756 TCCGCACGGCCCTTTCTG 62.698 66.667 3.66 0.00 34.68 3.02
4687 6258 3.064324 GCACGGCCCTTTCTGCAT 61.064 61.111 0.00 0.00 0.00 3.96
4688 6259 3.056313 GCACGGCCCTTTCTGCATC 62.056 63.158 0.00 0.00 0.00 3.91
4689 6260 2.044946 ACGGCCCTTTCTGCATCC 60.045 61.111 0.00 0.00 0.00 3.51
4690 6261 2.273449 CGGCCCTTTCTGCATCCT 59.727 61.111 0.00 0.00 0.00 3.24
4691 6262 1.379044 CGGCCCTTTCTGCATCCTT 60.379 57.895 0.00 0.00 0.00 3.36
4692 6263 0.967380 CGGCCCTTTCTGCATCCTTT 60.967 55.000 0.00 0.00 0.00 3.11
4693 6264 1.269958 GGCCCTTTCTGCATCCTTTT 58.730 50.000 0.00 0.00 0.00 2.27
4694 6265 2.456577 GGCCCTTTCTGCATCCTTTTA 58.543 47.619 0.00 0.00 0.00 1.52
4695 6266 2.166459 GGCCCTTTCTGCATCCTTTTAC 59.834 50.000 0.00 0.00 0.00 2.01
4696 6267 2.825532 GCCCTTTCTGCATCCTTTTACA 59.174 45.455 0.00 0.00 0.00 2.41
4697 6268 3.367395 GCCCTTTCTGCATCCTTTTACAC 60.367 47.826 0.00 0.00 0.00 2.90
4698 6269 3.193479 CCCTTTCTGCATCCTTTTACACC 59.807 47.826 0.00 0.00 0.00 4.16
4699 6270 4.082125 CCTTTCTGCATCCTTTTACACCT 58.918 43.478 0.00 0.00 0.00 4.00
4700 6271 4.524328 CCTTTCTGCATCCTTTTACACCTT 59.476 41.667 0.00 0.00 0.00 3.50
4701 6272 5.011023 CCTTTCTGCATCCTTTTACACCTTT 59.989 40.000 0.00 0.00 0.00 3.11
4702 6273 5.705609 TTCTGCATCCTTTTACACCTTTC 57.294 39.130 0.00 0.00 0.00 2.62
4703 6274 3.751175 TCTGCATCCTTTTACACCTTTCG 59.249 43.478 0.00 0.00 0.00 3.46
4704 6275 2.817258 TGCATCCTTTTACACCTTTCGG 59.183 45.455 0.00 0.00 0.00 4.30
4706 6277 3.254903 GCATCCTTTTACACCTTTCGGTT 59.745 43.478 0.00 0.00 42.13 4.44
4707 6278 4.456566 GCATCCTTTTACACCTTTCGGTTA 59.543 41.667 0.00 0.00 42.13 2.85
4708 6279 5.048573 GCATCCTTTTACACCTTTCGGTTAA 60.049 40.000 0.00 0.00 42.13 2.01
4709 6280 6.349860 GCATCCTTTTACACCTTTCGGTTAAT 60.350 38.462 0.00 0.00 42.13 1.40
4710 6281 6.806388 TCCTTTTACACCTTTCGGTTAATC 57.194 37.500 0.00 0.00 42.13 1.75
4711 6282 6.297582 TCCTTTTACACCTTTCGGTTAATCA 58.702 36.000 0.00 0.00 42.13 2.57
4712 6283 6.771749 TCCTTTTACACCTTTCGGTTAATCAA 59.228 34.615 0.00 0.00 42.13 2.57
4713 6284 7.449086 TCCTTTTACACCTTTCGGTTAATCAAT 59.551 33.333 0.00 0.00 42.13 2.57
4714 6285 8.732531 CCTTTTACACCTTTCGGTTAATCAATA 58.267 33.333 0.00 0.00 42.13 1.90
4718 6289 7.754851 ACACCTTTCGGTTAATCAATAAAGT 57.245 32.000 0.00 0.00 42.13 2.66
4719 6290 8.173542 ACACCTTTCGGTTAATCAATAAAGTT 57.826 30.769 0.00 0.00 42.13 2.66
4720 6291 8.635328 ACACCTTTCGGTTAATCAATAAAGTTT 58.365 29.630 0.00 0.00 42.13 2.66
4721 6292 8.911662 CACCTTTCGGTTAATCAATAAAGTTTG 58.088 33.333 0.00 0.00 42.13 2.93
4722 6293 8.085909 ACCTTTCGGTTAATCAATAAAGTTTGG 58.914 33.333 0.00 0.00 42.13 3.28
4723 6294 7.062956 CCTTTCGGTTAATCAATAAAGTTTGGC 59.937 37.037 0.00 0.00 0.00 4.52
4724 6295 5.956642 TCGGTTAATCAATAAAGTTTGGCC 58.043 37.500 0.00 0.00 0.00 5.36
4725 6296 5.712917 TCGGTTAATCAATAAAGTTTGGCCT 59.287 36.000 3.32 0.00 0.00 5.19
4726 6297 6.885376 TCGGTTAATCAATAAAGTTTGGCCTA 59.115 34.615 3.32 0.00 0.00 3.93
4727 6298 7.393796 TCGGTTAATCAATAAAGTTTGGCCTAA 59.606 33.333 3.32 0.00 0.00 2.69
4728 6299 8.194769 CGGTTAATCAATAAAGTTTGGCCTAAT 58.805 33.333 3.32 0.00 0.00 1.73
4729 6300 9.313118 GGTTAATCAATAAAGTTTGGCCTAATG 57.687 33.333 3.32 0.00 0.00 1.90
4730 6301 8.817100 GTTAATCAATAAAGTTTGGCCTAATGC 58.183 33.333 3.32 0.00 40.16 3.56
4731 6302 6.796785 ATCAATAAAGTTTGGCCTAATGCT 57.203 33.333 3.32 0.00 40.92 3.79
4732 6303 6.207691 TCAATAAAGTTTGGCCTAATGCTC 57.792 37.500 3.32 0.00 40.92 4.26
4733 6304 4.900635 ATAAAGTTTGGCCTAATGCTCG 57.099 40.909 3.32 0.00 40.92 5.03
4734 6305 2.489938 AAGTTTGGCCTAATGCTCGA 57.510 45.000 3.32 0.00 40.92 4.04
4735 6306 2.717639 AGTTTGGCCTAATGCTCGAT 57.282 45.000 3.32 0.00 40.92 3.59
4736 6307 2.292267 AGTTTGGCCTAATGCTCGATG 58.708 47.619 3.32 0.00 40.92 3.84
4737 6308 2.092968 AGTTTGGCCTAATGCTCGATGA 60.093 45.455 3.32 0.00 40.92 2.92
4738 6309 2.682856 GTTTGGCCTAATGCTCGATGAA 59.317 45.455 3.32 0.00 40.92 2.57
4739 6310 2.708216 TGGCCTAATGCTCGATGAAA 57.292 45.000 3.32 0.00 40.92 2.69
4740 6311 2.997980 TGGCCTAATGCTCGATGAAAA 58.002 42.857 3.32 0.00 40.92 2.29
4741 6312 2.945008 TGGCCTAATGCTCGATGAAAAG 59.055 45.455 3.32 0.00 40.92 2.27
4742 6313 3.206150 GGCCTAATGCTCGATGAAAAGA 58.794 45.455 0.00 0.00 40.92 2.52
4743 6314 3.627577 GGCCTAATGCTCGATGAAAAGAA 59.372 43.478 0.00 0.00 40.92 2.52
4744 6315 4.096382 GGCCTAATGCTCGATGAAAAGAAA 59.904 41.667 0.00 0.00 40.92 2.52
4745 6316 5.393027 GGCCTAATGCTCGATGAAAAGAAAA 60.393 40.000 0.00 0.00 40.92 2.29
4746 6317 6.092748 GCCTAATGCTCGATGAAAAGAAAAA 58.907 36.000 0.00 0.00 36.87 1.94
4769 6340 4.368543 GCAGCAAGCCAGCAACCC 62.369 66.667 0.55 0.00 37.23 4.11
4770 6341 2.599578 CAGCAAGCCAGCAACCCT 60.600 61.111 0.55 0.00 36.85 4.34
4771 6342 1.303561 CAGCAAGCCAGCAACCCTA 60.304 57.895 0.55 0.00 36.85 3.53
4772 6343 0.682209 CAGCAAGCCAGCAACCCTAT 60.682 55.000 0.55 0.00 36.85 2.57
4773 6344 0.040204 AGCAAGCCAGCAACCCTATT 59.960 50.000 0.55 0.00 36.85 1.73
4774 6345 1.284785 AGCAAGCCAGCAACCCTATTA 59.715 47.619 0.55 0.00 36.85 0.98
4775 6346 2.091665 AGCAAGCCAGCAACCCTATTAT 60.092 45.455 0.55 0.00 36.85 1.28
4776 6347 2.035066 GCAAGCCAGCAACCCTATTATG 59.965 50.000 0.00 0.00 0.00 1.90
4777 6348 3.290710 CAAGCCAGCAACCCTATTATGT 58.709 45.455 0.00 0.00 0.00 2.29
4778 6349 3.669939 AGCCAGCAACCCTATTATGTT 57.330 42.857 0.00 0.00 0.00 2.71
4779 6350 3.290710 AGCCAGCAACCCTATTATGTTG 58.709 45.455 0.00 0.00 43.62 3.33
4780 6351 2.362077 GCCAGCAACCCTATTATGTTGG 59.638 50.000 3.83 3.83 45.12 3.77
4781 6352 3.897239 CCAGCAACCCTATTATGTTGGA 58.103 45.455 2.17 0.00 45.14 3.53
4782 6353 3.632145 CCAGCAACCCTATTATGTTGGAC 59.368 47.826 2.17 0.00 45.14 4.02
4783 6354 4.526970 CAGCAACCCTATTATGTTGGACT 58.473 43.478 4.74 0.00 41.62 3.85
4784 6355 4.336433 CAGCAACCCTATTATGTTGGACTG 59.664 45.833 4.74 1.38 41.62 3.51
4785 6356 3.632145 GCAACCCTATTATGTTGGACTGG 59.368 47.826 4.74 0.00 41.62 4.00
4786 6357 4.207165 CAACCCTATTATGTTGGACTGGG 58.793 47.826 0.00 0.00 38.50 4.45
4787 6358 3.470868 ACCCTATTATGTTGGACTGGGT 58.529 45.455 0.00 0.00 41.39 4.51
4788 6359 3.202151 ACCCTATTATGTTGGACTGGGTG 59.798 47.826 0.00 0.00 44.14 4.61
4789 6360 3.435026 CCCTATTATGTTGGACTGGGTGG 60.435 52.174 0.00 0.00 0.00 4.61
4790 6361 2.143876 ATTATGTTGGACTGGGTGGC 57.856 50.000 0.00 0.00 0.00 5.01
4791 6362 0.774276 TTATGTTGGACTGGGTGGCA 59.226 50.000 0.00 0.00 0.00 4.92
4792 6363 0.774276 TATGTTGGACTGGGTGGCAA 59.226 50.000 0.00 0.00 0.00 4.52
4793 6364 0.540365 ATGTTGGACTGGGTGGCAAG 60.540 55.000 0.00 0.00 0.00 4.01
4794 6365 1.152756 GTTGGACTGGGTGGCAAGT 60.153 57.895 0.00 0.00 0.00 3.16
4795 6366 1.152777 TTGGACTGGGTGGCAAGTG 60.153 57.895 0.00 0.00 0.00 3.16
4796 6367 1.932156 TTGGACTGGGTGGCAAGTGT 61.932 55.000 0.00 0.00 0.00 3.55
4797 6368 1.057275 TGGACTGGGTGGCAAGTGTA 61.057 55.000 0.00 0.00 0.00 2.90
4798 6369 0.109723 GGACTGGGTGGCAAGTGTAA 59.890 55.000 0.00 0.00 0.00 2.41
4799 6370 1.477923 GGACTGGGTGGCAAGTGTAAA 60.478 52.381 0.00 0.00 0.00 2.01
4800 6371 2.303175 GACTGGGTGGCAAGTGTAAAA 58.697 47.619 0.00 0.00 0.00 1.52
4801 6372 2.890945 GACTGGGTGGCAAGTGTAAAAT 59.109 45.455 0.00 0.00 0.00 1.82
4802 6373 3.304829 ACTGGGTGGCAAGTGTAAAATT 58.695 40.909 0.00 0.00 0.00 1.82
4803 6374 4.475345 ACTGGGTGGCAAGTGTAAAATTA 58.525 39.130 0.00 0.00 0.00 1.40
4804 6375 4.279922 ACTGGGTGGCAAGTGTAAAATTAC 59.720 41.667 0.00 0.00 0.00 1.89
4805 6376 3.253677 TGGGTGGCAAGTGTAAAATTACG 59.746 43.478 0.00 0.00 36.45 3.18
4806 6377 3.239254 GGTGGCAAGTGTAAAATTACGC 58.761 45.455 8.46 8.46 42.81 4.42
4813 6384 3.378959 GTGTAAAATTACGCTGGACCG 57.621 47.619 9.10 0.00 40.16 4.79
4814 6385 2.094734 GTGTAAAATTACGCTGGACCGG 59.905 50.000 0.00 0.00 40.16 5.28
4815 6386 1.063027 GTAAAATTACGCTGGACCGGC 59.937 52.381 15.94 15.94 0.00 6.13
4816 6387 0.322187 AAAATTACGCTGGACCGGCT 60.322 50.000 22.91 12.32 32.89 5.52
4817 6388 1.024579 AAATTACGCTGGACCGGCTG 61.025 55.000 22.91 17.66 32.89 4.85
4818 6389 2.869503 AATTACGCTGGACCGGCTGG 62.870 60.000 22.91 11.02 42.84 4.85
4823 6394 3.136123 CTGGACCGGCTGGCAATG 61.136 66.667 12.89 0.00 39.70 2.82
4824 6395 4.738998 TGGACCGGCTGGCAATGG 62.739 66.667 12.89 0.00 39.70 3.16
4827 6398 4.992740 ACCGGCTGGCAATGGCAA 62.993 61.111 12.89 0.00 43.71 4.52
4828 6399 4.137872 CCGGCTGGCAATGGCAAG 62.138 66.667 11.45 6.43 44.45 4.01
4829 6400 3.376078 CGGCTGGCAATGGCAAGT 61.376 61.111 11.45 0.00 43.46 3.16
4830 6401 2.263540 GGCTGGCAATGGCAAGTG 59.736 61.111 11.45 0.18 43.46 3.16
4831 6402 2.576832 GGCTGGCAATGGCAAGTGT 61.577 57.895 11.45 0.00 43.46 3.55
4832 6403 1.250154 GGCTGGCAATGGCAAGTGTA 61.250 55.000 11.45 0.00 43.46 2.90
4833 6404 0.602562 GCTGGCAATGGCAAGTGTAA 59.397 50.000 11.45 0.00 43.46 2.41
4834 6405 1.000731 GCTGGCAATGGCAAGTGTAAA 59.999 47.619 11.45 0.00 43.46 2.01
4835 6406 2.547642 GCTGGCAATGGCAAGTGTAAAA 60.548 45.455 11.45 0.00 43.46 1.52
4836 6407 3.865684 GCTGGCAATGGCAAGTGTAAAAT 60.866 43.478 11.45 0.00 43.46 1.82
4837 6408 4.317488 CTGGCAATGGCAAGTGTAAAATT 58.683 39.130 11.45 0.00 43.71 1.82
4838 6409 5.474578 TGGCAATGGCAAGTGTAAAATTA 57.525 34.783 7.14 0.00 43.71 1.40
4839 6410 5.233988 TGGCAATGGCAAGTGTAAAATTAC 58.766 37.500 7.14 0.00 43.71 1.89
4840 6411 4.326009 GGCAATGGCAAGTGTAAAATTACG 59.674 41.667 0.58 0.00 43.71 3.18
4841 6412 4.201580 GCAATGGCAAGTGTAAAATTACGC 60.202 41.667 8.46 8.46 40.77 4.42
4842 6413 3.562567 TGGCAAGTGTAAAATTACGCC 57.437 42.857 12.02 11.45 43.34 5.68
4843 6414 2.095668 TGGCAAGTGTAAAATTACGCCG 60.096 45.455 12.02 6.44 43.34 6.46
4844 6415 2.095617 GGCAAGTGTAAAATTACGCCGT 60.096 45.455 12.02 0.00 43.34 5.68
4845 6416 2.906161 GCAAGTGTAAAATTACGCCGTG 59.094 45.455 12.02 11.52 43.34 4.94
4846 6417 3.364167 GCAAGTGTAAAATTACGCCGTGA 60.364 43.478 16.33 0.00 43.34 4.35
4847 6418 4.774586 CAAGTGTAAAATTACGCCGTGAA 58.225 39.130 12.02 0.00 43.34 3.18
4848 6419 4.657075 AGTGTAAAATTACGCCGTGAAG 57.343 40.909 12.02 0.00 43.34 3.02
4849 6420 4.309099 AGTGTAAAATTACGCCGTGAAGA 58.691 39.130 12.02 0.00 43.34 2.87
4850 6421 4.933400 AGTGTAAAATTACGCCGTGAAGAT 59.067 37.500 12.02 0.00 43.34 2.40
4851 6422 6.101332 AGTGTAAAATTACGCCGTGAAGATA 58.899 36.000 12.02 0.00 43.34 1.98
4852 6423 6.591062 AGTGTAAAATTACGCCGTGAAGATAA 59.409 34.615 12.02 0.00 43.34 1.75
4853 6424 6.898189 GTGTAAAATTACGCCGTGAAGATAAG 59.102 38.462 0.00 0.00 38.01 1.73
4854 6425 6.591062 TGTAAAATTACGCCGTGAAGATAAGT 59.409 34.615 0.00 0.00 36.45 2.24
4855 6426 5.464965 AAATTACGCCGTGAAGATAAGTG 57.535 39.130 0.00 0.00 0.00 3.16
4856 6427 2.572191 TACGCCGTGAAGATAAGTGG 57.428 50.000 0.00 0.00 0.00 4.00
4857 6428 0.739813 ACGCCGTGAAGATAAGTGGC 60.740 55.000 0.00 0.00 39.10 5.01
4858 6429 0.460284 CGCCGTGAAGATAAGTGGCT 60.460 55.000 0.00 0.00 40.31 4.75
4859 6430 1.009829 GCCGTGAAGATAAGTGGCTG 58.990 55.000 0.00 0.00 39.38 4.85
4860 6431 1.405526 GCCGTGAAGATAAGTGGCTGA 60.406 52.381 0.00 0.00 39.38 4.26
4861 6432 2.935238 GCCGTGAAGATAAGTGGCTGAA 60.935 50.000 0.00 0.00 39.38 3.02
4862 6433 3.535561 CCGTGAAGATAAGTGGCTGAAT 58.464 45.455 0.00 0.00 0.00 2.57
4863 6434 3.941483 CCGTGAAGATAAGTGGCTGAATT 59.059 43.478 0.00 0.00 0.00 2.17
4864 6435 4.396166 CCGTGAAGATAAGTGGCTGAATTT 59.604 41.667 0.00 0.00 0.00 1.82
4865 6436 5.106157 CCGTGAAGATAAGTGGCTGAATTTT 60.106 40.000 0.00 0.00 0.00 1.82
4866 6437 6.381801 CGTGAAGATAAGTGGCTGAATTTTT 58.618 36.000 0.00 0.00 0.00 1.94
4900 6471 8.924511 AAAGAAAGATAACTGACTGAATTCCA 57.075 30.769 2.27 0.00 0.00 3.53
4901 6472 9.525826 AAAGAAAGATAACTGACTGAATTCCAT 57.474 29.630 2.27 0.00 0.00 3.41
4902 6473 8.729805 AGAAAGATAACTGACTGAATTCCATC 57.270 34.615 2.27 1.05 0.00 3.51
4903 6474 8.324306 AGAAAGATAACTGACTGAATTCCATCA 58.676 33.333 2.27 5.83 0.00 3.07
4904 6475 9.118300 GAAAGATAACTGACTGAATTCCATCAT 57.882 33.333 2.27 0.00 0.00 2.45
4999 6570 2.676016 GATCTGACGGCTGAGAGCGG 62.676 65.000 3.59 0.00 43.62 5.52
5004 6575 3.197614 CGGCTGAGAGCGGTCTTA 58.802 61.111 19.66 14.03 43.62 2.10
5005 6576 1.736586 CGGCTGAGAGCGGTCTTAT 59.263 57.895 19.66 0.00 43.62 1.73
5006 6577 0.103208 CGGCTGAGAGCGGTCTTATT 59.897 55.000 19.66 0.00 43.62 1.40
5007 6578 1.471676 CGGCTGAGAGCGGTCTTATTT 60.472 52.381 19.66 0.00 43.62 1.40
5008 6579 1.936547 GGCTGAGAGCGGTCTTATTTG 59.063 52.381 19.66 4.21 43.62 2.32
5009 6580 2.622436 GCTGAGAGCGGTCTTATTTGT 58.378 47.619 19.66 0.00 30.97 2.83
5010 6581 3.003480 GCTGAGAGCGGTCTTATTTGTT 58.997 45.455 19.66 0.00 30.97 2.83
5011 6582 3.437049 GCTGAGAGCGGTCTTATTTGTTT 59.563 43.478 19.66 0.00 30.97 2.83
5012 6583 4.436183 GCTGAGAGCGGTCTTATTTGTTTC 60.436 45.833 19.66 3.17 30.97 2.78
5013 6584 4.894784 TGAGAGCGGTCTTATTTGTTTCT 58.105 39.130 19.66 0.00 30.97 2.52
5014 6585 5.305585 TGAGAGCGGTCTTATTTGTTTCTT 58.694 37.500 19.66 0.00 30.97 2.52
5015 6586 6.460781 TGAGAGCGGTCTTATTTGTTTCTTA 58.539 36.000 19.66 0.00 30.97 2.10
5016 6587 6.932400 TGAGAGCGGTCTTATTTGTTTCTTAA 59.068 34.615 19.66 0.00 30.97 1.85
5017 6588 7.606456 TGAGAGCGGTCTTATTTGTTTCTTAAT 59.394 33.333 19.66 0.00 30.97 1.40
5018 6589 8.336801 AGAGCGGTCTTATTTGTTTCTTAATT 57.663 30.769 12.24 0.00 0.00 1.40
5019 6590 9.444600 AGAGCGGTCTTATTTGTTTCTTAATTA 57.555 29.630 12.24 0.00 0.00 1.40
5038 6609 9.744468 CTTAATTATTAACTGGTACAAATGCCC 57.256 33.333 0.00 0.00 38.70 5.36
5039 6610 5.821516 TTATTAACTGGTACAAATGCCCG 57.178 39.130 0.00 0.00 38.70 6.13
5040 6611 2.863132 TAACTGGTACAAATGCCCGT 57.137 45.000 0.00 0.00 38.70 5.28
5041 6612 1.243902 AACTGGTACAAATGCCCGTG 58.756 50.000 0.00 0.00 38.70 4.94
5042 6613 1.241315 ACTGGTACAAATGCCCGTGC 61.241 55.000 0.00 0.00 38.70 5.34
5043 6614 2.252127 CTGGTACAAATGCCCGTGCG 62.252 60.000 0.00 0.00 38.19 5.34
5044 6615 2.329614 GGTACAAATGCCCGTGCGT 61.330 57.895 0.00 0.00 41.78 5.24
5046 6617 0.727793 GTACAAATGCCCGTGCGTTG 60.728 55.000 0.00 1.29 45.88 4.10
5047 6618 2.465097 TACAAATGCCCGTGCGTTGC 62.465 55.000 0.00 0.00 45.88 4.17
5048 6619 3.600694 AAATGCCCGTGCGTTGCA 61.601 55.556 0.00 8.11 45.88 4.08
5081 6652 7.894376 AAAATGAAATGTAACCTGCTTCATG 57.106 32.000 0.00 0.00 36.95 3.07
5082 6653 6.594788 AATGAAATGTAACCTGCTTCATGT 57.405 33.333 0.00 0.00 36.95 3.21
5083 6654 5.375417 TGAAATGTAACCTGCTTCATGTG 57.625 39.130 0.00 0.00 0.00 3.21
5084 6655 3.855689 AATGTAACCTGCTTCATGTGC 57.144 42.857 6.53 6.53 0.00 4.57
5085 6656 1.533625 TGTAACCTGCTTCATGTGCC 58.466 50.000 10.03 0.00 0.00 5.01
5086 6657 1.202867 TGTAACCTGCTTCATGTGCCA 60.203 47.619 10.03 0.00 0.00 4.92
5087 6658 2.094675 GTAACCTGCTTCATGTGCCAT 58.905 47.619 10.03 0.00 0.00 4.40
5088 6659 1.636148 AACCTGCTTCATGTGCCATT 58.364 45.000 10.03 1.46 0.00 3.16
5089 6660 2.512692 ACCTGCTTCATGTGCCATTA 57.487 45.000 10.03 0.00 0.00 1.90
5090 6661 3.022557 ACCTGCTTCATGTGCCATTAT 57.977 42.857 10.03 0.00 0.00 1.28
5091 6662 2.691526 ACCTGCTTCATGTGCCATTATG 59.308 45.455 10.03 0.00 0.00 1.90
5092 6663 2.545113 CCTGCTTCATGTGCCATTATGC 60.545 50.000 10.03 0.00 0.00 3.14
5093 6664 2.100087 CTGCTTCATGTGCCATTATGCA 59.900 45.455 10.03 0.00 39.37 3.96
5094 6665 2.496470 TGCTTCATGTGCCATTATGCAA 59.504 40.909 10.03 0.00 44.11 4.08
5095 6666 2.861935 GCTTCATGTGCCATTATGCAAC 59.138 45.455 0.00 0.00 44.11 4.17
5096 6667 3.676598 GCTTCATGTGCCATTATGCAACA 60.677 43.478 0.00 0.00 44.11 3.33
5097 6668 4.689071 CTTCATGTGCCATTATGCAACAT 58.311 39.130 0.00 5.52 44.11 2.71
5098 6669 4.739587 TCATGTGCCATTATGCAACATT 57.260 36.364 7.84 0.00 44.11 2.71
5099 6670 5.087391 TCATGTGCCATTATGCAACATTT 57.913 34.783 7.84 0.00 44.11 2.32
5100 6671 5.489249 TCATGTGCCATTATGCAACATTTT 58.511 33.333 7.84 0.00 44.11 1.82
5101 6672 5.938710 TCATGTGCCATTATGCAACATTTTT 59.061 32.000 7.84 0.00 44.11 1.94
5102 6673 7.101700 TCATGTGCCATTATGCAACATTTTTA 58.898 30.769 7.84 0.00 44.11 1.52
5103 6674 7.769507 TCATGTGCCATTATGCAACATTTTTAT 59.230 29.630 7.84 0.00 44.11 1.40
5104 6675 9.043079 CATGTGCCATTATGCAACATTTTTATA 57.957 29.630 7.84 0.00 44.11 0.98
5105 6676 9.610705 ATGTGCCATTATGCAACATTTTTATAA 57.389 25.926 0.00 0.00 44.11 0.98
5106 6677 9.610705 TGTGCCATTATGCAACATTTTTATAAT 57.389 25.926 0.00 0.00 44.11 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.839432 GGAGAAGCGGGGTCTCGG 61.839 72.222 0.00 0.00 42.13 4.63
62 63 3.838271 GACTCGGCGGCATGGAGA 61.838 66.667 17.12 1.66 0.00 3.71
110 111 4.927782 GCGTGAGGTGGTGTGGCA 62.928 66.667 0.00 0.00 0.00 4.92
165 166 1.670811 GCGGTGTCATGTTCCCTATTG 59.329 52.381 0.00 0.00 0.00 1.90
248 250 1.258982 GCATCGTCAAGCAACTATCGG 59.741 52.381 0.00 0.00 0.00 4.18
306 308 1.001269 AGACGACTCCGGTCATGGA 60.001 57.895 0.00 0.00 42.21 3.41
330 332 0.029567 GAGACATAGTCGCCGGTGAG 59.970 60.000 20.25 9.35 37.67 3.51
374 376 1.417890 GTGACGGATCTTGGATCCCAT 59.582 52.381 17.65 8.73 34.76 4.00
538 546 2.032620 GAGCCCGAGGAGTTTAGATCA 58.967 52.381 0.00 0.00 0.00 2.92
548 556 2.109128 AGATCTAATCTGAGCCCGAGGA 59.891 50.000 0.00 0.00 38.44 3.71
557 565 3.761218 GGCTCCGATGAGATCTAATCTGA 59.239 47.826 16.68 14.41 41.42 3.27
563 571 4.590647 AGATTTTGGCTCCGATGAGATCTA 59.409 41.667 0.00 0.00 41.42 1.98
575 583 0.665298 GGCGGATGAGATTTTGGCTC 59.335 55.000 0.00 0.00 0.00 4.70
598 607 3.311110 GGATATCTCCGGCGGCCA 61.311 66.667 23.83 10.47 0.00 5.36
743 760 3.680786 CCGTCGCTGAGGACACCA 61.681 66.667 0.00 0.00 36.73 4.17
766 783 1.048724 CCTCCATCGCCTCCCACTAA 61.049 60.000 0.00 0.00 0.00 2.24
793 810 1.378382 CCATCCACACCGCCATCAA 60.378 57.895 0.00 0.00 0.00 2.57
858 875 1.532794 CATCTCCTCTCTCCCCCGG 60.533 68.421 0.00 0.00 0.00 5.73
872 889 3.524095 TGGAACAAACATGGGTCATCT 57.476 42.857 0.00 0.00 31.92 2.90
873 890 6.963739 AATGTTTGGAACAAACATGGGTCATC 60.964 38.462 29.85 3.75 46.62 2.92
874 891 5.163216 AATGTTTGGAACAAACATGGGTCAT 60.163 36.000 29.85 16.78 46.62 3.06
875 892 4.163078 AATGTTTGGAACAAACATGGGTCA 59.837 37.500 29.85 10.11 46.62 4.02
876 893 4.702831 AATGTTTGGAACAAACATGGGTC 58.297 39.130 29.85 5.52 46.62 4.46
877 894 4.769345 AATGTTTGGAACAAACATGGGT 57.231 36.364 29.85 17.88 46.62 4.51
878 895 5.176590 CGTAAATGTTTGGAACAAACATGGG 59.823 40.000 29.85 19.28 46.62 4.00
879 896 5.980116 TCGTAAATGTTTGGAACAAACATGG 59.020 36.000 29.85 21.58 46.62 3.66
880 897 6.695278 ACTCGTAAATGTTTGGAACAAACATG 59.305 34.615 29.85 21.44 46.62 3.21
926 943 5.022787 AGGTGGGCTTAAGCAATAATTCAA 58.977 37.500 27.83 0.08 44.36 2.69
1009 1027 1.135689 CACGCTTTACCTTGGTGCATC 60.136 52.381 2.03 0.00 0.00 3.91
1285 1332 5.011090 TCTGAGTATTCATTCTCAACCCG 57.989 43.478 0.00 0.00 39.67 5.28
1335 1382 1.475213 CCGGTGATTCTTAGCCCTTCC 60.475 57.143 0.00 0.00 0.00 3.46
1353 1400 1.160137 CTCCAGGAAAAGCTTCACCG 58.840 55.000 0.00 3.55 32.75 4.94
1372 1419 2.104963 ACCCACTCACTTGAAGTTCTCC 59.895 50.000 4.17 0.00 0.00 3.71
1422 1469 6.035843 CACATTTATAAAGCGCACCTCAAAT 58.964 36.000 11.47 6.82 0.00 2.32
1471 1518 4.000988 GGACTCAGAAACGCAGGAATTTA 58.999 43.478 0.00 0.00 0.00 1.40
1481 1528 3.978687 AGTTGTACAGGACTCAGAAACG 58.021 45.455 0.00 0.00 0.00 3.60
1501 1559 5.947503 TTTTCATTTTGCAAACGTGAGAG 57.052 34.783 12.39 0.00 0.00 3.20
1692 1777 5.884232 ACATCATCCGCGGTAACTAGATATA 59.116 40.000 27.15 0.03 0.00 0.86
1798 1883 5.983118 AGACCAAGCTAAAACAAAAATTCCG 59.017 36.000 0.00 0.00 0.00 4.30
2030 2267 6.561737 AGATGCAAATATCATCTCAGCAAG 57.438 37.500 0.00 0.00 45.31 4.01
2144 2381 9.720667 CATTGCAGAATTAACATTATTCGAGAA 57.279 29.630 0.00 0.00 0.00 2.87
2145 2382 8.344831 CCATTGCAGAATTAACATTATTCGAGA 58.655 33.333 0.00 0.00 0.00 4.04
2171 3394 5.160641 TCTCTTGTTGCACTCAAACAAAAC 58.839 37.500 2.78 0.00 33.37 2.43
2400 3629 1.804748 GCAGGTTCCCACGTTTCTAAG 59.195 52.381 0.00 0.00 0.00 2.18
2526 3755 3.206150 TCAGAAACAAGAGACAGCCAAC 58.794 45.455 0.00 0.00 0.00 3.77
2817 4049 5.189934 ACTTATTTTGGGACAGAGGGAGTAG 59.810 44.000 0.00 0.00 42.39 2.57
2889 4121 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2950 4182 0.813610 TTCCACGGCGCCAATCTATG 60.814 55.000 28.98 10.77 0.00 2.23
3058 4290 8.435430 GCTATTTTTACTTGAATTCCTGCAAAC 58.565 33.333 2.27 0.00 0.00 2.93
3154 4388 6.096423 AGACAATGCAATGCTCAGTTCAATAT 59.904 34.615 6.82 0.00 0.00 1.28
3156 4390 4.219944 AGACAATGCAATGCTCAGTTCAAT 59.780 37.500 6.82 0.00 0.00 2.57
3193 4427 7.215789 AGGAATGCTAGATTAGTTGTCATCTG 58.784 38.462 0.00 0.00 31.89 2.90
3195 4429 7.170658 GTGAGGAATGCTAGATTAGTTGTCATC 59.829 40.741 0.00 0.00 0.00 2.92
3216 4450 4.038402 AGTTGCCTTCTTCATTTTGTGAGG 59.962 41.667 0.00 0.00 38.29 3.86
3234 4503 5.118990 TGTGAGGAATGCTAGATTAGTTGC 58.881 41.667 0.00 0.00 0.00 4.17
3258 4527 6.886459 TGCTAGATTAGTTGCCTTCTTCATTT 59.114 34.615 0.00 0.00 0.00 2.32
3269 4538 5.118990 TGTGAGGAATGCTAGATTAGTTGC 58.881 41.667 0.00 0.00 0.00 4.17
3297 4566 8.877779 CATAGACCAAGATTAGTTGTCTTCTTG 58.122 37.037 4.87 4.87 42.91 3.02
3510 4785 4.731313 AATGAAATACTCCCTCCATCCC 57.269 45.455 0.00 0.00 0.00 3.85
3556 4831 2.093783 GTGTTATTTGTCGAGCCTTCGG 59.906 50.000 0.00 0.00 46.67 4.30
3648 4936 2.633481 CAGGCCCTTAGTACCTATGTCC 59.367 54.545 0.00 0.00 30.84 4.02
3663 4951 3.683365 AACAACAATTCAATCAGGCCC 57.317 42.857 0.00 0.00 0.00 5.80
3674 4962 5.869888 TGTAAAAGCGTGGAAAACAACAATT 59.130 32.000 0.00 0.00 0.00 2.32
3724 5012 2.356695 CCAACCGGAAAAGAAAACGACT 59.643 45.455 9.46 0.00 0.00 4.18
3740 5028 5.066505 CACCAGCTATCTGTTATTTCCAACC 59.933 44.000 0.00 0.00 38.66 3.77
3788 5076 5.312443 GGAATGGGGGTAGATTTATACACCT 59.688 44.000 3.81 0.00 46.73 4.00
3800 5088 1.152963 CCGCTTGGAATGGGGGTAG 60.153 63.158 0.00 0.00 39.95 3.18
3809 5097 2.228480 ACTTAGGCCCCGCTTGGAA 61.228 57.895 0.00 0.00 35.39 3.53
3810 5098 2.609610 ACTTAGGCCCCGCTTGGA 60.610 61.111 0.00 0.00 35.39 3.53
3811 5099 2.438434 CACTTAGGCCCCGCTTGG 60.438 66.667 0.00 0.00 0.00 3.61
3812 5100 1.303317 AACACTTAGGCCCCGCTTG 60.303 57.895 0.00 0.00 0.00 4.01
3813 5101 1.303317 CAACACTTAGGCCCCGCTT 60.303 57.895 0.00 0.00 0.00 4.68
3814 5102 2.351276 CAACACTTAGGCCCCGCT 59.649 61.111 0.00 0.00 0.00 5.52
3815 5103 2.750237 CCAACACTTAGGCCCCGC 60.750 66.667 0.00 0.00 0.00 6.13
3816 5104 0.958876 GAACCAACACTTAGGCCCCG 60.959 60.000 0.00 0.00 0.00 5.73
3817 5105 0.404426 AGAACCAACACTTAGGCCCC 59.596 55.000 0.00 0.00 0.00 5.80
3818 5106 2.287977 AAGAACCAACACTTAGGCCC 57.712 50.000 0.00 0.00 0.00 5.80
3819 5107 2.296190 CCAAAGAACCAACACTTAGGCC 59.704 50.000 0.00 0.00 0.00 5.19
3820 5108 3.219281 TCCAAAGAACCAACACTTAGGC 58.781 45.455 0.00 0.00 0.00 3.93
3821 5109 6.405278 AAATCCAAAGAACCAACACTTAGG 57.595 37.500 0.00 0.00 0.00 2.69
3822 5110 6.200854 GCAAAATCCAAAGAACCAACACTTAG 59.799 38.462 0.00 0.00 0.00 2.18
3906 5353 9.353999 AGTTCAAAAGACAAAATGTTAGACAAC 57.646 29.630 0.00 0.00 35.06 3.32
3950 5397 6.641314 GTGCTAACTTCACGTGCATATATAGT 59.359 38.462 11.67 2.54 36.04 2.12
3998 5447 7.902920 TGCTCCTACTGCATATCATGATATA 57.097 36.000 24.45 11.86 35.31 0.86
3999 5448 6.803366 TGCTCCTACTGCATATCATGATAT 57.197 37.500 20.42 20.42 35.31 1.63
4000 5449 6.610075 TTGCTCCTACTGCATATCATGATA 57.390 37.500 17.56 17.56 40.34 2.15
4001 5450 5.494390 TTGCTCCTACTGCATATCATGAT 57.506 39.130 13.81 13.81 40.34 2.45
4114 5587 6.416415 TCTACTCTACTCTACTCCAACTTGG 58.584 44.000 0.74 0.74 39.43 3.61
4122 5612 5.824097 CCCAACCTTCTACTCTACTCTACTC 59.176 48.000 0.00 0.00 0.00 2.59
4123 5613 5.340194 CCCCAACCTTCTACTCTACTCTACT 60.340 48.000 0.00 0.00 0.00 2.57
4124 5614 4.888823 CCCCAACCTTCTACTCTACTCTAC 59.111 50.000 0.00 0.00 0.00 2.59
4125 5615 4.543337 ACCCCAACCTTCTACTCTACTCTA 59.457 45.833 0.00 0.00 0.00 2.43
4126 5616 3.337301 ACCCCAACCTTCTACTCTACTCT 59.663 47.826 0.00 0.00 0.00 3.24
4165 5655 3.701040 ACACAAGAATCACAAGCCAAACT 59.299 39.130 0.00 0.00 0.00 2.66
4200 5690 1.136695 TGCAGGAAACCAAAGCTTGTG 59.863 47.619 0.00 0.45 0.00 3.33
4207 5697 4.282195 ACCGATAAAATGCAGGAAACCAAA 59.718 37.500 0.00 0.00 0.00 3.28
4227 5717 2.159184 AGACACAGACATGCATAGACCG 60.159 50.000 0.00 0.00 0.00 4.79
4235 5725 1.357258 CGGAGCAGACACAGACATGC 61.357 60.000 0.00 0.00 38.97 4.06
4236 5726 2.746997 CGGAGCAGACACAGACATG 58.253 57.895 0.00 0.00 0.00 3.21
4271 5771 6.207417 CCAATCTCACTCAGTAACCAACAAAT 59.793 38.462 0.00 0.00 0.00 2.32
4274 5774 4.346709 TCCAATCTCACTCAGTAACCAACA 59.653 41.667 0.00 0.00 0.00 3.33
4275 5775 4.894784 TCCAATCTCACTCAGTAACCAAC 58.105 43.478 0.00 0.00 0.00 3.77
4276 5776 5.560722 TTCCAATCTCACTCAGTAACCAA 57.439 39.130 0.00 0.00 0.00 3.67
4290 5790 3.071023 TCGTCAGGTCACTTTTCCAATCT 59.929 43.478 0.00 0.00 0.00 2.40
4311 5811 4.211389 CACAACACAAGCGACTTATGTTC 58.789 43.478 11.55 0.00 38.77 3.18
4336 5837 5.066593 AGGTGCTTTTCTTTCTAGTTCCAG 58.933 41.667 0.00 0.00 0.00 3.86
4337 5838 5.048846 AGGTGCTTTTCTTTCTAGTTCCA 57.951 39.130 0.00 0.00 0.00 3.53
4339 5840 6.428159 TCATGAGGTGCTTTTCTTTCTAGTTC 59.572 38.462 0.00 0.00 0.00 3.01
4341 5842 5.869579 TCATGAGGTGCTTTTCTTTCTAGT 58.130 37.500 0.00 0.00 0.00 2.57
4342 5843 6.169094 TCTCATGAGGTGCTTTTCTTTCTAG 58.831 40.000 22.42 0.00 0.00 2.43
4343 5844 6.114187 TCTCATGAGGTGCTTTTCTTTCTA 57.886 37.500 22.42 0.00 0.00 2.10
4373 5877 4.144703 GCCCCGACCTTCTCGTCC 62.145 72.222 0.00 0.00 41.18 4.79
4411 5936 2.740714 GCCGTCTCCATCACGTTGC 61.741 63.158 0.00 0.00 35.39 4.17
4442 5967 4.172512 AGCCTCCCATCTGCGCAG 62.173 66.667 31.53 31.53 0.00 5.18
4446 5974 0.822532 CCATTGAGCCTCCCATCTGC 60.823 60.000 0.00 0.00 0.00 4.26
4471 5999 2.074547 TGCCGAAGAAAACGAGGTAG 57.925 50.000 0.00 0.00 0.00 3.18
4480 6008 1.613255 GGGAACAGGATGCCGAAGAAA 60.613 52.381 0.00 0.00 42.53 2.52
4516 6044 3.557264 GCCTCTGCACAGGTTACTAGTTT 60.557 47.826 9.97 0.00 35.72 2.66
4533 6061 1.815003 CGCCTTGAAAATCTTGCCTCT 59.185 47.619 0.00 0.00 0.00 3.69
4541 6069 0.179103 CCATGGCCGCCTTGAAAATC 60.179 55.000 23.54 0.00 31.33 2.17
4543 6071 2.941616 GCCATGGCCGCCTTGAAAA 61.942 57.895 27.24 0.00 31.33 2.29
4591 6162 4.219944 AGGCTTACAATCACACGAGTTAGA 59.780 41.667 0.00 0.00 0.00 2.10
4592 6163 4.327357 CAGGCTTACAATCACACGAGTTAG 59.673 45.833 0.00 0.00 0.00 2.34
4593 6164 4.242475 CAGGCTTACAATCACACGAGTTA 58.758 43.478 0.00 0.00 0.00 2.24
4594 6165 3.067106 CAGGCTTACAATCACACGAGTT 58.933 45.455 0.00 0.00 0.00 3.01
4595 6166 2.037251 ACAGGCTTACAATCACACGAGT 59.963 45.455 0.00 0.00 0.00 4.18
4596 6167 2.688507 ACAGGCTTACAATCACACGAG 58.311 47.619 0.00 0.00 0.00 4.18
4597 6168 2.831685 ACAGGCTTACAATCACACGA 57.168 45.000 0.00 0.00 0.00 4.35
4598 6169 3.896648 AAACAGGCTTACAATCACACG 57.103 42.857 0.00 0.00 0.00 4.49
4621 6192 9.057089 CCTAAAGAAGAAGAAAACTTTGCTAGA 57.943 33.333 0.00 0.00 34.93 2.43
4622 6193 7.805542 GCCTAAAGAAGAAGAAAACTTTGCTAG 59.194 37.037 0.00 0.00 34.93 3.42
4623 6194 7.255486 GGCCTAAAGAAGAAGAAAACTTTGCTA 60.255 37.037 0.00 0.00 34.93 3.49
4624 6195 6.461648 GGCCTAAAGAAGAAGAAAACTTTGCT 60.462 38.462 0.00 0.00 34.93 3.91
4625 6196 5.692204 GGCCTAAAGAAGAAGAAAACTTTGC 59.308 40.000 0.00 0.00 34.93 3.68
4626 6197 6.697455 GTGGCCTAAAGAAGAAGAAAACTTTG 59.303 38.462 3.32 0.00 34.93 2.77
4627 6198 6.379988 TGTGGCCTAAAGAAGAAGAAAACTTT 59.620 34.615 3.32 0.00 36.68 2.66
4628 6199 5.891551 TGTGGCCTAAAGAAGAAGAAAACTT 59.108 36.000 3.32 0.00 0.00 2.66
4629 6200 5.445964 TGTGGCCTAAAGAAGAAGAAAACT 58.554 37.500 3.32 0.00 0.00 2.66
4630 6201 5.767816 TGTGGCCTAAAGAAGAAGAAAAC 57.232 39.130 3.32 0.00 0.00 2.43
4631 6202 6.293955 CGATTGTGGCCTAAAGAAGAAGAAAA 60.294 38.462 3.32 0.00 0.00 2.29
4632 6203 5.181245 CGATTGTGGCCTAAAGAAGAAGAAA 59.819 40.000 3.32 0.00 0.00 2.52
4633 6204 4.695455 CGATTGTGGCCTAAAGAAGAAGAA 59.305 41.667 3.32 0.00 0.00 2.52
4634 6205 4.253685 CGATTGTGGCCTAAAGAAGAAGA 58.746 43.478 3.32 0.00 0.00 2.87
4635 6206 3.181506 GCGATTGTGGCCTAAAGAAGAAG 60.182 47.826 3.32 0.00 0.00 2.85
4636 6207 2.747446 GCGATTGTGGCCTAAAGAAGAA 59.253 45.455 3.32 0.00 0.00 2.52
4637 6208 2.356135 GCGATTGTGGCCTAAAGAAGA 58.644 47.619 3.32 0.00 0.00 2.87
4638 6209 2.832672 GCGATTGTGGCCTAAAGAAG 57.167 50.000 3.32 0.00 0.00 2.85
4647 6218 1.153784 CAACCATGGCGATTGTGGC 60.154 57.895 13.04 0.00 36.47 5.01
4648 6219 1.153784 GCAACCATGGCGATTGTGG 60.154 57.895 13.04 0.00 38.96 4.17
4649 6220 0.179156 GAGCAACCATGGCGATTGTG 60.179 55.000 13.04 1.74 36.08 3.33
4650 6221 1.315257 GGAGCAACCATGGCGATTGT 61.315 55.000 13.04 0.35 38.79 2.71
4651 6222 1.434696 GGAGCAACCATGGCGATTG 59.565 57.895 13.04 10.50 38.79 2.67
4652 6223 2.114670 CGGAGCAACCATGGCGATT 61.115 57.895 13.04 0.00 38.90 3.34
4653 6224 2.514592 CGGAGCAACCATGGCGAT 60.515 61.111 13.04 0.86 38.90 4.58
4666 6237 4.394712 AGAAAGGGCCGTGCGGAG 62.395 66.667 15.45 0.00 37.50 4.63
4667 6238 4.697756 CAGAAAGGGCCGTGCGGA 62.698 66.667 15.45 0.00 37.50 5.54
4670 6241 3.056313 GATGCAGAAAGGGCCGTGC 62.056 63.158 14.02 14.02 36.42 5.34
4671 6242 2.409870 GGATGCAGAAAGGGCCGTG 61.410 63.158 0.00 0.00 0.00 4.94
4672 6243 2.044946 GGATGCAGAAAGGGCCGT 60.045 61.111 0.00 0.00 0.00 5.68
4673 6244 0.967380 AAAGGATGCAGAAAGGGCCG 60.967 55.000 0.00 0.00 0.00 6.13
4674 6245 1.269958 AAAAGGATGCAGAAAGGGCC 58.730 50.000 0.00 0.00 0.00 5.80
4675 6246 2.825532 TGTAAAAGGATGCAGAAAGGGC 59.174 45.455 0.00 0.00 0.00 5.19
4676 6247 3.193479 GGTGTAAAAGGATGCAGAAAGGG 59.807 47.826 0.00 0.00 0.00 3.95
4677 6248 4.082125 AGGTGTAAAAGGATGCAGAAAGG 58.918 43.478 0.00 0.00 0.00 3.11
4678 6249 5.712152 AAGGTGTAAAAGGATGCAGAAAG 57.288 39.130 0.00 0.00 0.00 2.62
4679 6250 5.278266 CGAAAGGTGTAAAAGGATGCAGAAA 60.278 40.000 0.00 0.00 0.00 2.52
4680 6251 4.215399 CGAAAGGTGTAAAAGGATGCAGAA 59.785 41.667 0.00 0.00 0.00 3.02
4681 6252 3.751175 CGAAAGGTGTAAAAGGATGCAGA 59.249 43.478 0.00 0.00 0.00 4.26
4682 6253 4.083581 CGAAAGGTGTAAAAGGATGCAG 57.916 45.455 0.00 0.00 0.00 4.41
4697 6268 7.062956 GCCAAACTTTATTGATTAACCGAAAGG 59.937 37.037 0.00 0.00 44.74 3.11
4698 6269 7.062956 GGCCAAACTTTATTGATTAACCGAAAG 59.937 37.037 0.00 0.00 31.84 2.62
4699 6270 6.869388 GGCCAAACTTTATTGATTAACCGAAA 59.131 34.615 0.00 0.00 31.84 3.46
4700 6271 6.209788 AGGCCAAACTTTATTGATTAACCGAA 59.790 34.615 5.01 0.00 31.84 4.30
4701 6272 5.712917 AGGCCAAACTTTATTGATTAACCGA 59.287 36.000 5.01 0.00 31.84 4.69
4702 6273 5.961272 AGGCCAAACTTTATTGATTAACCG 58.039 37.500 5.01 0.00 31.84 4.44
4703 6274 9.313118 CATTAGGCCAAACTTTATTGATTAACC 57.687 33.333 5.01 0.00 31.84 2.85
4704 6275 8.817100 GCATTAGGCCAAACTTTATTGATTAAC 58.183 33.333 5.01 0.00 36.11 2.01
4705 6276 8.757877 AGCATTAGGCCAAACTTTATTGATTAA 58.242 29.630 5.01 0.00 46.50 1.40
4706 6277 8.305046 AGCATTAGGCCAAACTTTATTGATTA 57.695 30.769 5.01 0.00 46.50 1.75
4707 6278 7.186570 AGCATTAGGCCAAACTTTATTGATT 57.813 32.000 5.01 0.00 46.50 2.57
4708 6279 6.460123 CGAGCATTAGGCCAAACTTTATTGAT 60.460 38.462 5.01 0.00 46.50 2.57
4709 6280 5.163663 CGAGCATTAGGCCAAACTTTATTGA 60.164 40.000 5.01 0.00 46.50 2.57
4710 6281 5.036737 CGAGCATTAGGCCAAACTTTATTG 58.963 41.667 5.01 0.00 46.50 1.90
4711 6282 4.947388 TCGAGCATTAGGCCAAACTTTATT 59.053 37.500 5.01 0.00 46.50 1.40
4712 6283 4.523083 TCGAGCATTAGGCCAAACTTTAT 58.477 39.130 5.01 0.00 46.50 1.40
4713 6284 3.945346 TCGAGCATTAGGCCAAACTTTA 58.055 40.909 5.01 0.00 46.50 1.85
4714 6285 2.790433 TCGAGCATTAGGCCAAACTTT 58.210 42.857 5.01 0.00 46.50 2.66
4715 6286 2.489938 TCGAGCATTAGGCCAAACTT 57.510 45.000 5.01 0.00 46.50 2.66
4716 6287 2.092968 TCATCGAGCATTAGGCCAAACT 60.093 45.455 5.01 0.00 46.50 2.66
4717 6288 2.288666 TCATCGAGCATTAGGCCAAAC 58.711 47.619 5.01 0.00 46.50 2.93
4718 6289 2.708216 TCATCGAGCATTAGGCCAAA 57.292 45.000 5.01 0.00 46.50 3.28
4719 6290 2.708216 TTCATCGAGCATTAGGCCAA 57.292 45.000 5.01 0.00 46.50 4.52
4720 6291 2.708216 TTTCATCGAGCATTAGGCCA 57.292 45.000 5.01 0.00 46.50 5.36
4721 6292 3.206150 TCTTTTCATCGAGCATTAGGCC 58.794 45.455 0.00 0.00 46.50 5.19
4722 6293 4.882671 TTCTTTTCATCGAGCATTAGGC 57.117 40.909 0.00 0.00 45.30 3.93
4743 6314 1.068127 CTGGCTTGCTGCTCTGTTTTT 59.932 47.619 0.00 0.00 42.39 1.94
4744 6315 0.672342 CTGGCTTGCTGCTCTGTTTT 59.328 50.000 0.00 0.00 42.39 2.43
4745 6316 1.803366 GCTGGCTTGCTGCTCTGTTT 61.803 55.000 0.00 0.00 42.39 2.83
4746 6317 2.266627 GCTGGCTTGCTGCTCTGTT 61.267 57.895 0.00 0.00 42.39 3.16
4747 6318 2.672307 GCTGGCTTGCTGCTCTGT 60.672 61.111 0.00 0.00 42.39 3.41
4748 6319 2.265904 TTGCTGGCTTGCTGCTCTG 61.266 57.895 0.00 0.00 42.39 3.35
4749 6320 2.114625 TTGCTGGCTTGCTGCTCT 59.885 55.556 0.00 0.00 42.39 4.09
4750 6321 2.257676 GTTGCTGGCTTGCTGCTC 59.742 61.111 0.00 0.00 42.39 4.26
4751 6322 3.300765 GGTTGCTGGCTTGCTGCT 61.301 61.111 0.00 0.00 42.39 4.24
4752 6323 4.368543 GGGTTGCTGGCTTGCTGC 62.369 66.667 0.00 0.00 41.94 5.25
4753 6324 0.682209 ATAGGGTTGCTGGCTTGCTG 60.682 55.000 4.89 0.00 0.00 4.41
4754 6325 0.040204 AATAGGGTTGCTGGCTTGCT 59.960 50.000 4.89 0.00 0.00 3.91
4755 6326 1.762708 TAATAGGGTTGCTGGCTTGC 58.237 50.000 0.00 0.00 0.00 4.01
4756 6327 3.290710 ACATAATAGGGTTGCTGGCTTG 58.709 45.455 0.00 0.00 0.00 4.01
4757 6328 3.669939 ACATAATAGGGTTGCTGGCTT 57.330 42.857 0.00 0.00 0.00 4.35
4758 6329 3.290710 CAACATAATAGGGTTGCTGGCT 58.709 45.455 0.00 0.00 38.08 4.75
4759 6330 2.362077 CCAACATAATAGGGTTGCTGGC 59.638 50.000 0.00 0.00 42.26 4.85
4760 6331 3.632145 GTCCAACATAATAGGGTTGCTGG 59.368 47.826 0.00 0.00 42.26 4.85
4761 6332 4.336433 CAGTCCAACATAATAGGGTTGCTG 59.664 45.833 0.00 0.00 42.26 4.41
4762 6333 4.526970 CAGTCCAACATAATAGGGTTGCT 58.473 43.478 0.00 0.00 42.26 3.91
4763 6334 3.632145 CCAGTCCAACATAATAGGGTTGC 59.368 47.826 0.00 0.00 42.26 4.17
4764 6335 4.207165 CCCAGTCCAACATAATAGGGTTG 58.793 47.826 0.00 0.00 43.02 3.77
4765 6336 3.856206 ACCCAGTCCAACATAATAGGGTT 59.144 43.478 0.00 0.00 45.61 4.11
4766 6337 3.470868 ACCCAGTCCAACATAATAGGGT 58.529 45.455 0.00 0.00 43.19 4.34
4767 6338 3.435026 CCACCCAGTCCAACATAATAGGG 60.435 52.174 0.00 0.00 40.88 3.53
4768 6339 3.820557 CCACCCAGTCCAACATAATAGG 58.179 50.000 0.00 0.00 0.00 2.57
4769 6340 3.214328 GCCACCCAGTCCAACATAATAG 58.786 50.000 0.00 0.00 0.00 1.73
4770 6341 2.578480 TGCCACCCAGTCCAACATAATA 59.422 45.455 0.00 0.00 0.00 0.98
4771 6342 1.357420 TGCCACCCAGTCCAACATAAT 59.643 47.619 0.00 0.00 0.00 1.28
4772 6343 0.774276 TGCCACCCAGTCCAACATAA 59.226 50.000 0.00 0.00 0.00 1.90
4773 6344 0.774276 TTGCCACCCAGTCCAACATA 59.226 50.000 0.00 0.00 0.00 2.29
4774 6345 0.540365 CTTGCCACCCAGTCCAACAT 60.540 55.000 0.00 0.00 0.00 2.71
4775 6346 1.152777 CTTGCCACCCAGTCCAACA 60.153 57.895 0.00 0.00 0.00 3.33
4776 6347 1.152756 ACTTGCCACCCAGTCCAAC 60.153 57.895 0.00 0.00 0.00 3.77
4777 6348 1.152777 CACTTGCCACCCAGTCCAA 60.153 57.895 0.00 0.00 0.00 3.53
4778 6349 1.057275 TACACTTGCCACCCAGTCCA 61.057 55.000 0.00 0.00 0.00 4.02
4779 6350 0.109723 TTACACTTGCCACCCAGTCC 59.890 55.000 0.00 0.00 0.00 3.85
4780 6351 1.975660 TTTACACTTGCCACCCAGTC 58.024 50.000 0.00 0.00 0.00 3.51
4781 6352 2.445682 TTTTACACTTGCCACCCAGT 57.554 45.000 0.00 0.00 0.00 4.00
4782 6353 4.614993 CGTAATTTTACACTTGCCACCCAG 60.615 45.833 1.76 0.00 33.28 4.45
4783 6354 3.253677 CGTAATTTTACACTTGCCACCCA 59.746 43.478 1.76 0.00 33.28 4.51
4784 6355 3.828786 CGTAATTTTACACTTGCCACCC 58.171 45.455 1.76 0.00 33.28 4.61
4785 6356 3.057806 AGCGTAATTTTACACTTGCCACC 60.058 43.478 1.76 0.00 33.28 4.61
4786 6357 3.911964 CAGCGTAATTTTACACTTGCCAC 59.088 43.478 1.76 0.00 33.28 5.01
4787 6358 3.057876 CCAGCGTAATTTTACACTTGCCA 60.058 43.478 1.76 0.00 33.28 4.92
4788 6359 3.189702 TCCAGCGTAATTTTACACTTGCC 59.810 43.478 1.76 0.00 33.28 4.52
4789 6360 4.156182 GTCCAGCGTAATTTTACACTTGC 58.844 43.478 1.76 0.00 33.28 4.01
4790 6361 4.668177 CGGTCCAGCGTAATTTTACACTTG 60.668 45.833 1.76 0.00 33.28 3.16
4791 6362 3.434299 CGGTCCAGCGTAATTTTACACTT 59.566 43.478 1.76 0.00 33.28 3.16
4792 6363 2.997986 CGGTCCAGCGTAATTTTACACT 59.002 45.455 1.76 0.00 33.28 3.55
4793 6364 2.094734 CCGGTCCAGCGTAATTTTACAC 59.905 50.000 0.00 0.00 33.28 2.90
4794 6365 2.348660 CCGGTCCAGCGTAATTTTACA 58.651 47.619 0.00 0.00 33.28 2.41
4795 6366 1.063027 GCCGGTCCAGCGTAATTTTAC 59.937 52.381 1.90 0.00 0.00 2.01
4796 6367 1.065998 AGCCGGTCCAGCGTAATTTTA 60.066 47.619 1.90 0.00 34.64 1.52
4797 6368 0.322187 AGCCGGTCCAGCGTAATTTT 60.322 50.000 1.90 0.00 34.64 1.82
4798 6369 1.024579 CAGCCGGTCCAGCGTAATTT 61.025 55.000 1.90 0.00 34.64 1.82
4799 6370 1.449601 CAGCCGGTCCAGCGTAATT 60.450 57.895 1.90 0.00 34.64 1.40
4800 6371 2.186903 CAGCCGGTCCAGCGTAAT 59.813 61.111 1.90 0.00 34.64 1.89
4801 6372 4.077184 CCAGCCGGTCCAGCGTAA 62.077 66.667 1.90 0.00 34.64 3.18
4806 6377 3.136123 CATTGCCAGCCGGTCCAG 61.136 66.667 1.90 0.00 33.28 3.86
4807 6378 4.738998 CCATTGCCAGCCGGTCCA 62.739 66.667 1.90 0.00 33.28 4.02
4810 6381 4.992740 TTGCCATTGCCAGCCGGT 62.993 61.111 1.90 0.00 36.33 5.28
4811 6382 4.137872 CTTGCCATTGCCAGCCGG 62.138 66.667 0.00 0.00 36.33 6.13
4812 6383 3.376078 ACTTGCCATTGCCAGCCG 61.376 61.111 0.00 0.00 33.64 5.52
4813 6384 1.250154 TACACTTGCCATTGCCAGCC 61.250 55.000 0.00 0.00 33.64 4.85
4814 6385 0.602562 TTACACTTGCCATTGCCAGC 59.397 50.000 0.00 0.00 33.64 4.85
4815 6386 3.383620 TTTTACACTTGCCATTGCCAG 57.616 42.857 0.00 0.00 36.36 4.85
4816 6387 4.348863 AATTTTACACTTGCCATTGCCA 57.651 36.364 0.00 0.00 36.33 4.92
4817 6388 4.326009 CGTAATTTTACACTTGCCATTGCC 59.674 41.667 1.76 0.00 32.93 4.52
4818 6389 4.201580 GCGTAATTTTACACTTGCCATTGC 60.202 41.667 1.76 0.00 33.28 3.56
4819 6390 4.326009 GGCGTAATTTTACACTTGCCATTG 59.674 41.667 10.41 0.00 36.82 2.82
4820 6391 4.490743 GGCGTAATTTTACACTTGCCATT 58.509 39.130 10.41 0.00 36.82 3.16
4821 6392 3.426963 CGGCGTAATTTTACACTTGCCAT 60.427 43.478 13.76 0.00 36.71 4.40
4822 6393 2.095668 CGGCGTAATTTTACACTTGCCA 60.096 45.455 13.76 0.00 36.71 4.92
4823 6394 2.095617 ACGGCGTAATTTTACACTTGCC 60.096 45.455 12.58 6.90 34.87 4.52
4824 6395 2.906161 CACGGCGTAATTTTACACTTGC 59.094 45.455 14.22 0.00 33.28 4.01
4825 6396 4.392619 TCACGGCGTAATTTTACACTTG 57.607 40.909 14.22 0.00 33.28 3.16
4826 6397 4.751098 TCTTCACGGCGTAATTTTACACTT 59.249 37.500 14.22 0.00 33.28 3.16
4827 6398 4.309099 TCTTCACGGCGTAATTTTACACT 58.691 39.130 14.22 0.00 33.28 3.55
4828 6399 4.650545 TCTTCACGGCGTAATTTTACAC 57.349 40.909 14.22 0.00 33.28 2.90
4829 6400 6.591062 ACTTATCTTCACGGCGTAATTTTACA 59.409 34.615 14.22 0.00 33.28 2.41
4830 6401 6.898189 CACTTATCTTCACGGCGTAATTTTAC 59.102 38.462 14.22 0.00 0.00 2.01
4831 6402 6.036300 CCACTTATCTTCACGGCGTAATTTTA 59.964 38.462 14.22 0.00 0.00 1.52
4832 6403 5.163794 CCACTTATCTTCACGGCGTAATTTT 60.164 40.000 14.22 0.19 0.00 1.82
4833 6404 4.331717 CCACTTATCTTCACGGCGTAATTT 59.668 41.667 14.22 0.00 0.00 1.82
4834 6405 3.869246 CCACTTATCTTCACGGCGTAATT 59.131 43.478 14.22 0.00 0.00 1.40
4835 6406 3.454375 CCACTTATCTTCACGGCGTAAT 58.546 45.455 14.22 6.92 0.00 1.89
4836 6407 2.883574 CCACTTATCTTCACGGCGTAA 58.116 47.619 14.22 0.00 0.00 3.18
4837 6408 1.470285 GCCACTTATCTTCACGGCGTA 60.470 52.381 14.22 0.00 0.00 4.42
4838 6409 0.739813 GCCACTTATCTTCACGGCGT 60.740 55.000 6.77 6.77 0.00 5.68
4839 6410 0.460284 AGCCACTTATCTTCACGGCG 60.460 55.000 4.80 4.80 44.34 6.46
4840 6411 1.009829 CAGCCACTTATCTTCACGGC 58.990 55.000 0.00 0.00 39.90 5.68
4841 6412 2.672961 TCAGCCACTTATCTTCACGG 57.327 50.000 0.00 0.00 0.00 4.94
4842 6413 5.551760 AAATTCAGCCACTTATCTTCACG 57.448 39.130 0.00 0.00 0.00 4.35
4874 6445 9.354673 TGGAATTCAGTCAGTTATCTTTCTTTT 57.645 29.630 7.93 0.00 0.00 2.27
4875 6446 8.924511 TGGAATTCAGTCAGTTATCTTTCTTT 57.075 30.769 7.93 0.00 0.00 2.52
4876 6447 9.171877 GATGGAATTCAGTCAGTTATCTTTCTT 57.828 33.333 7.93 0.00 0.00 2.52
4877 6448 8.324306 TGATGGAATTCAGTCAGTTATCTTTCT 58.676 33.333 7.93 0.00 0.00 2.52
4878 6449 8.498054 TGATGGAATTCAGTCAGTTATCTTTC 57.502 34.615 7.93 0.00 0.00 2.62
4907 6478 7.574967 CGCCTTCAGTCAGTTATATTGGTTTTT 60.575 37.037 0.00 0.00 0.00 1.94
4908 6479 6.128007 CGCCTTCAGTCAGTTATATTGGTTTT 60.128 38.462 0.00 0.00 0.00 2.43
4909 6480 5.354234 CGCCTTCAGTCAGTTATATTGGTTT 59.646 40.000 0.00 0.00 0.00 3.27
4910 6481 4.876107 CGCCTTCAGTCAGTTATATTGGTT 59.124 41.667 0.00 0.00 0.00 3.67
4911 6482 4.442706 CGCCTTCAGTCAGTTATATTGGT 58.557 43.478 0.00 0.00 0.00 3.67
4922 6493 2.342279 CCGAACCGCCTTCAGTCA 59.658 61.111 0.00 0.00 0.00 3.41
4965 6536 0.179197 AGATCTCACGCACGTACACG 60.179 55.000 0.00 0.00 46.33 4.49
5012 6583 9.744468 GGGCATTTGTACCAGTTAATAATTAAG 57.256 33.333 0.00 0.00 0.00 1.85
5013 6584 8.407064 CGGGCATTTGTACCAGTTAATAATTAA 58.593 33.333 0.00 0.00 0.00 1.40
5014 6585 7.556996 ACGGGCATTTGTACCAGTTAATAATTA 59.443 33.333 0.00 0.00 29.42 1.40
5015 6586 6.378848 ACGGGCATTTGTACCAGTTAATAATT 59.621 34.615 0.00 0.00 29.42 1.40
5016 6587 5.889289 ACGGGCATTTGTACCAGTTAATAAT 59.111 36.000 0.00 0.00 29.42 1.28
5017 6588 5.124138 CACGGGCATTTGTACCAGTTAATAA 59.876 40.000 0.00 0.00 31.57 1.40
5018 6589 4.636648 CACGGGCATTTGTACCAGTTAATA 59.363 41.667 0.00 0.00 31.57 0.98
5019 6590 3.442273 CACGGGCATTTGTACCAGTTAAT 59.558 43.478 0.00 0.00 31.57 1.40
5020 6591 2.814919 CACGGGCATTTGTACCAGTTAA 59.185 45.455 0.00 0.00 31.57 2.01
5021 6592 2.428491 CACGGGCATTTGTACCAGTTA 58.572 47.619 0.00 0.00 31.57 2.24
5022 6593 1.243902 CACGGGCATTTGTACCAGTT 58.756 50.000 0.00 0.00 31.57 3.16
5023 6594 1.241315 GCACGGGCATTTGTACCAGT 61.241 55.000 3.77 0.00 40.72 4.00
5024 6595 1.506262 GCACGGGCATTTGTACCAG 59.494 57.895 3.77 0.00 40.72 4.00
5025 6596 2.328856 CGCACGGGCATTTGTACCA 61.329 57.895 11.77 0.00 41.24 3.25
5026 6597 1.858372 AACGCACGGGCATTTGTACC 61.858 55.000 11.77 0.00 41.24 3.34
5027 6598 0.727793 CAACGCACGGGCATTTGTAC 60.728 55.000 11.77 0.00 41.24 2.90
5028 6599 1.576920 CAACGCACGGGCATTTGTA 59.423 52.632 11.77 0.00 41.24 2.41
5029 6600 2.334653 CAACGCACGGGCATTTGT 59.665 55.556 11.77 0.00 41.24 2.83
5030 6601 3.105157 GCAACGCACGGGCATTTG 61.105 61.111 11.77 13.80 41.24 2.32
5031 6602 3.600694 TGCAACGCACGGGCATTT 61.601 55.556 11.77 0.00 41.24 2.32
5056 6627 7.933033 ACATGAAGCAGGTTACATTTCATTTTT 59.067 29.630 0.00 0.00 36.61 1.94
5057 6628 7.385752 CACATGAAGCAGGTTACATTTCATTTT 59.614 33.333 0.00 0.00 36.61 1.82
5058 6629 6.869913 CACATGAAGCAGGTTACATTTCATTT 59.130 34.615 0.00 0.00 36.61 2.32
5059 6630 6.392354 CACATGAAGCAGGTTACATTTCATT 58.608 36.000 0.00 0.00 36.61 2.57
5060 6631 5.622914 GCACATGAAGCAGGTTACATTTCAT 60.623 40.000 0.00 0.00 38.60 2.57
5061 6632 4.321156 GCACATGAAGCAGGTTACATTTCA 60.321 41.667 0.00 0.00 32.90 2.69
5062 6633 4.168760 GCACATGAAGCAGGTTACATTTC 58.831 43.478 0.00 0.00 0.00 2.17
5063 6634 3.056607 GGCACATGAAGCAGGTTACATTT 60.057 43.478 14.84 0.00 0.00 2.32
5064 6635 2.493278 GGCACATGAAGCAGGTTACATT 59.507 45.455 14.84 0.00 0.00 2.71
5065 6636 2.094675 GGCACATGAAGCAGGTTACAT 58.905 47.619 14.84 0.00 0.00 2.29
5066 6637 1.202867 TGGCACATGAAGCAGGTTACA 60.203 47.619 14.84 2.44 0.00 2.41
5067 6638 1.533625 TGGCACATGAAGCAGGTTAC 58.466 50.000 14.84 0.25 0.00 2.50
5069 6640 4.927557 TGGCACATGAAGCAGGTT 57.072 50.000 14.84 0.00 0.00 3.50
5080 6651 9.610705 ATTATAAAAATGTTGCATAATGGCACA 57.389 25.926 0.00 0.00 44.86 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.