AutoCloner

Multiple sequence alignment - TraesCS1A01G074200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G074200	chr1A	100.000	3221	0	0	1	3221	57751118	57747898	0.000000e+00	5949
1	TraesCS1A01G074200	chr1A	86.291	1386	143	18	1059	2420	57759412	57758050	0.000000e+00	1463
2	TraesCS1A01G074200	chr1B	86.966	2693	263	54	549	3217	94547630	94545002	0.000000e+00	2948
3	TraesCS1A01G074200	chr1B	92.017	1641	96	19	648	2284	94513238	94511629	0.000000e+00	2272
4	TraesCS1A01G074200	chr1B	83.244	2435	278	69	763	3139	94550674	94548312	0.000000e+00	2117
5	TraesCS1A01G074200	chr1B	87.609	686	61	16	803	1472	94560045	94559368	0.000000e+00	774
6	TraesCS1A01G074200	chr1B	87.810	443	29	12	2725	3164	94511148	94510728	2.230000e-136	496
7	TraesCS1A01G074200	chr1B	86.207	435	38	14	2266	2687	94511573	94511148	4.900000e-123	451
8	TraesCS1A01G074200	chr1B	88.108	185	16	4	549	731	94550854	94550674	7.000000e-52	215
9	TraesCS1A01G074200	chr1B	86.885	183	18	3	549	728	94560242	94560063	1.960000e-47	200
10	TraesCS1A01G074200	chr1D	90.413	1815	135	26	1050	2849	59107213	59105423	0.000000e+00	2351
11	TraesCS1A01G074200	chr1D	83.677	2328	258	63	763	3040	59124729	59122474	0.000000e+00	2082
12	TraesCS1A01G074200	chr1D	96.477	511	14	4	549	1058	59112809	59112302	0.000000e+00	841
13	TraesCS1A01G074200	chr1D	94.350	354	11	6	2873	3221	59105429	59105080	4.730000e-148	534
14	TraesCS1A01G074200	chr1D	88.108	185	16	4	549	731	59124909	59124729	7.000000e-52	215
15	TraesCS1A01G074200	chr3A	96.920	552	13	2	2	550	67576817	67577367	0.000000e+00	922
16	TraesCS1A01G074200	chr3A	90.450	555	44	7	1	550	457636755	457637305	0.000000e+00	723
17	TraesCS1A01G074200	chr2A	94.231	572	12	1	1	551	584070165	584069594	0.000000e+00	854
18	TraesCS1A01G074200	chr7A	94.097	559	28	3	1	555	686115709	686116266	0.000000e+00	845
19	TraesCS1A01G074200	chr7A	90.685	569	43	8	1	562	2686478	2687043	0.000000e+00	749
20	TraesCS1A01G074200	chr7A	90.182	550	45	6	2	546	692798130	692798675	0.000000e+00	708
21	TraesCS1A01G074200	chr5A	90.647	556	47	3	1	552	623558188	623557634	0.000000e+00	734
22	TraesCS1A01G074200	chr4A	90.744	551	44	6	2	547	621759712	621760260	0.000000e+00	728
23	TraesCS1A01G074200	chr3B	85.560	554	68	11	2	548	46370447	46369899	1.300000e-158	569

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G074200	chr1A	57747898	57751118	3220	True	5949.0	5949	100.0000	1	3221	1	chr1A.!!$R1	3220
1	TraesCS1A01G074200	chr1A	57758050	57759412	1362	True	1463.0	1463	86.2910	1059	2420	1	chr1A.!!$R2	1361
2	TraesCS1A01G074200	chr1B	94545002	94550854	5852	True	1760.0	2948	86.1060	549	3217	3	chr1B.!!$R2	2668
3	TraesCS1A01G074200	chr1B	94510728	94513238	2510	True	1073.0	2272	88.6780	648	3164	3	chr1B.!!$R1	2516
4	TraesCS1A01G074200	chr1B	94559368	94560242	874	True	487.0	774	87.2470	549	1472	2	chr1B.!!$R3	923
5	TraesCS1A01G074200	chr1D	59105080	59107213	2133	True	1442.5	2351	92.3815	1050	3221	2	chr1D.!!$R2	2171
6	TraesCS1A01G074200	chr1D	59122474	59124909	2435	True	1148.5	2082	85.8925	549	3040	2	chr1D.!!$R3	2491
7	TraesCS1A01G074200	chr1D	59112302	59112809	507	True	841.0	841	96.4770	549	1058	1	chr1D.!!$R1	509
8	TraesCS1A01G074200	chr3A	67576817	67577367	550	False	922.0	922	96.9200	2	550	1	chr3A.!!$F1	548
9	TraesCS1A01G074200	chr3A	457636755	457637305	550	False	723.0	723	90.4500	1	550	1	chr3A.!!$F2	549
10	TraesCS1A01G074200	chr2A	584069594	584070165	571	True	854.0	854	94.2310	1	551	1	chr2A.!!$R1	550
11	TraesCS1A01G074200	chr7A	686115709	686116266	557	False	845.0	845	94.0970	1	555	1	chr7A.!!$F2	554
12	TraesCS1A01G074200	chr7A	2686478	2687043	565	False	749.0	749	90.6850	1	562	1	chr7A.!!$F1	561
13	TraesCS1A01G074200	chr7A	692798130	692798675	545	False	708.0	708	90.1820	2	546	1	chr7A.!!$F3	544
14	TraesCS1A01G074200	chr5A	623557634	623558188	554	True	734.0	734	90.6470	1	552	1	chr5A.!!$R1	551
15	TraesCS1A01G074200	chr4A	621759712	621760260	548	False	728.0	728	90.7440	2	547	1	chr4A.!!$F1	545
16	TraesCS1A01G074200	chr3B	46369899	46370447	548	True	569.0	569	85.5600	2	548	1	chr3B.!!$R1	546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
940	984	2.046892	CTTCCCTGCTGGTCGTGG	60.047	66.667	9.00	0.0	34.77	4.94	F
1968	2036	0.314302	AAGACGAGGTGGTTCGACTG	59.686	55.000	2.12	0.0	42.88	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2184	2255	0.108615	CTTGGACTTGCCGACGATCT	60.109	55.000	0.0	0.0	40.66	2.75	R
2821	2989	1.135053	GGCTGACGGAAGAGAAGTACC	60.135	57.143	0.0	0.0	0.00	3.34	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
460	493	6.150474	GGATGAATCTTGTCCGGTTTTAGAAA	59.850	38.462	0.00	0.00	0.00	2.52
498	531	2.107552	TCCGGTTTTGAAGTTGAGGGAT	59.892	45.455	0.00	0.00	0.00	3.85
518	551	4.339814	GGATCAAGTCTAGACTCCGTCAAT	59.660	45.833	25.34	12.25	41.58	2.57
721	757	4.592942	TCGAAGCCTAGACCTACAAACTA	58.407	43.478	0.00	0.00	0.00	2.24
940	984	2.046892	CTTCCCTGCTGGTCGTGG	60.047	66.667	9.00	0.00	34.77	4.94
1040	1084	7.282224	TGTTTACGATAAGCAAAATAGCATCCT	59.718	33.333	0.00	0.00	36.85	3.24
1041	1085	5.931441	ACGATAAGCAAAATAGCATCCTC	57.069	39.130	0.00	0.00	36.85	3.71
1042	1086	4.449068	ACGATAAGCAAAATAGCATCCTCG	59.551	41.667	0.00	0.00	36.85	4.63
1046	1090	4.348863	AGCAAAATAGCATCCTCGATCT	57.651	40.909	0.00	0.00	36.85	2.75
1083	1127	6.697892	CCTTTCTTCTTGGTCACTCGTATATC	59.302	42.308	0.00	0.00	0.00	1.63
1224	1268	3.473647	CGCCTCCCTGCCAGATCA	61.474	66.667	0.00	0.00	0.00	2.92
1407	1463	0.765135	TCCCGTTTGTCTCCCCTTCA	60.765	55.000	0.00	0.00	0.00	3.02
1787	1855	1.673920	GCCAGGTGTCTTTTTCAACGA	59.326	47.619	0.00	0.00	0.00	3.85
1823	1891	3.450904	TCACCCACAAGCCTTCTATAGT	58.549	45.455	0.00	0.00	0.00	2.12
1824	1892	3.844211	TCACCCACAAGCCTTCTATAGTT	59.156	43.478	0.00	0.00	0.00	2.24
1847	1915	2.606826	GGACACCGAGGGGGAAGT	60.607	66.667	0.00	0.00	39.97	3.01
1848	1916	2.663196	GACACCGAGGGGGAAGTG	59.337	66.667	0.00	0.00	39.97	3.16
1911	1979	1.815003	GGTTTCATTCAGCTGTCCCAG	59.185	52.381	14.67	0.97	34.12	4.45
1926	1994	0.808755	CCCAGGGACGTTTGCATTAC	59.191	55.000	0.00	0.00	0.00	1.89
1968	2036	0.314302	AAGACGAGGTGGTTCGACTG	59.686	55.000	2.12	0.00	42.88	3.51
2035	2103	1.012841	GCATACTGCTGAAGCCTCAC	58.987	55.000	0.00	0.00	40.96	3.51
2051	2122	3.619733	GCCTCACATGTAGTTGGATCACA	60.620	47.826	0.00	0.00	0.00	3.58
2085	2156	8.751215	ATGAACCTGGATGGGTAAGTTATATA	57.249	34.615	0.00	0.00	38.87	0.86
2178	2249	7.586349	AGTGGGATAAAACATTGATGTCCTAT	58.414	34.615	0.00	0.00	40.80	2.57
2275	2420	6.821160	TGTGTCATTGTTCTCAGAGTTACAAA	59.179	34.615	18.44	6.68	34.54	2.83
2293	2438	3.056962	ACAAACTTTGCACACATGACACA	60.057	39.130	0.00	0.00	0.00	3.72
2294	2439	4.114073	CAAACTTTGCACACATGACACAT	58.886	39.130	0.00	0.00	0.00	3.21
2296	2441	4.754372	ACTTTGCACACATGACACATAG	57.246	40.909	0.00	0.00	0.00	2.23
2297	2442	3.503363	ACTTTGCACACATGACACATAGG	59.497	43.478	0.00	0.00	0.00	2.57
2315	2462	7.501225	ACACATAGGTTATTGGTGCCTTTATAC	59.499	37.037	0.00	0.00	34.07	1.47
2331	2478	5.823045	CCTTTATACCAAGTGGATCCTCAAC	59.177	44.000	14.23	2.60	38.94	3.18
2381	2529	1.811860	GGCTTTGCATGCCTACCTG	59.188	57.895	16.68	0.62	46.38	4.00
2408	2557	4.646572	TGTTTTTGGAGCAAAGTTGGTTT	58.353	34.783	0.00	0.00	39.30	3.27
2417	2566	6.430000	TGGAGCAAAGTTGGTTTATTCTAGAC	59.570	38.462	0.00	0.00	39.30	2.59
2427	2576	6.412214	TGGTTTATTCTAGACCTAACTTGGC	58.588	40.000	0.00	0.00	34.52	4.52
2430	2579	8.262933	GGTTTATTCTAGACCTAACTTGGCTAA	58.737	37.037	0.00	0.00	0.00	3.09
2439	2588	4.141688	ACCTAACTTGGCTAATGCTCCTAC	60.142	45.833	0.00	0.00	39.59	3.18
2458	2608	7.424227	TCCTACGTTGTTATTCGAAATTTGT	57.576	32.000	0.00	0.00	0.00	2.83
2463	2613	8.874745	ACGTTGTTATTCGAAATTTGTATGAG	57.125	30.769	0.00	0.00	0.00	2.90
2465	2615	7.304060	CGTTGTTATTCGAAATTTGTATGAGCG	60.304	37.037	0.00	0.00	0.00	5.03
2466	2616	7.067532	TGTTATTCGAAATTTGTATGAGCGT	57.932	32.000	0.00	0.00	0.00	5.07
2467	2617	7.523219	TGTTATTCGAAATTTGTATGAGCGTT	58.477	30.769	0.00	0.00	0.00	4.84
2494	2644	2.288666	TGTGTTCTTGCCTCTTCACAC	58.711	47.619	0.00	0.00	36.00	3.82
2496	2646	2.289002	GTGTTCTTGCCTCTTCACACAG	59.711	50.000	0.00	0.00	35.61	3.66
2502	2652	1.002430	TGCCTCTTCACACAGATGGTC	59.998	52.381	0.00	0.00	0.00	4.02
2504	2654	1.625315	CCTCTTCACACAGATGGTCCA	59.375	52.381	0.00	0.00	0.00	4.02
2598	2766	6.540189	GTCTCCTGTGCATATCATTGTAACTT	59.460	38.462	0.00	0.00	0.00	2.66
2638	2806	6.849085	ATTTGCAGTTGTGGGATGTATAAA	57.151	33.333	0.00	0.00	0.00	1.40
2664	2832	5.305585	TCTTGTTGACAGGCCTAGTAAAAG	58.694	41.667	3.98	5.93	0.00	2.27
2665	2833	4.699925	TGTTGACAGGCCTAGTAAAAGT	57.300	40.909	3.98	0.00	0.00	2.66
2666	2834	5.811796	TGTTGACAGGCCTAGTAAAAGTA	57.188	39.130	3.98	0.00	0.00	2.24
2670	2838	7.820872	TGTTGACAGGCCTAGTAAAAGTATTAC	59.179	37.037	3.98	0.00	0.00	1.89
2743	2911	3.922375	ACCCTTTGGAGTTTGGATGAAA	58.078	40.909	0.00	0.00	34.81	2.69
2760	2928	7.405292	TGGATGAAAATAAGTCCATGTCTTCT	58.595	34.615	4.10	0.00	35.91	2.85
2773	2941	5.763204	TCCATGTCTTCTTGAGGTTAACAAC	59.237	40.000	8.10	1.25	0.00	3.32
2822	2990	3.474570	CCTTCCCGAGGGCTGAGG	61.475	72.222	2.58	6.95	42.26	3.86
2823	2991	2.685380	CTTCCCGAGGGCTGAGGT	60.685	66.667	2.58	0.00	34.68	3.85
2857	3025	4.083802	CGTCAGCCCTCTGTTTCTTTTTAG	60.084	45.833	0.00	0.00	41.10	1.85
2875	3043	2.438800	AGTACGTATGTGGGCTCTCT	57.561	50.000	0.00	0.00	0.00	3.10
2879	3047	1.623811	ACGTATGTGGGCTCTCTTGTT	59.376	47.619	0.00	0.00	0.00	2.83
2892	3062	5.882557	GGCTCTCTTGTTCAAGATGGAATTA	59.117	40.000	14.37	0.00	0.00	1.40
2913	3083	0.394192	TTGGACACCTCAGAGTGCAG	59.606	55.000	0.00	0.00	41.67	4.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
460	493	2.159382	CGGACAACTTGCACCCTTAAT	58.841	47.619	0.00	0.00	0.00	1.40
625	659	1.147608	TGGGGGCAATAATGGAGATGG	59.852	52.381	0.00	0.00	0.00	3.51
721	757	4.236935	CGCTATGCTGGAAAAACAAATGT	58.763	39.130	0.00	0.00	0.00	2.71
754	790	4.880886	TTTGAGCACCAATATGATGACG	57.119	40.909	0.00	0.00	34.23	4.35
863	899	2.052157	CGACAAGAAGGTCAACTCGAC	58.948	52.381	0.00	0.00	44.57	4.20
878	914	0.530744	AAGACGCCTATGCTCGACAA	59.469	50.000	0.00	0.00	34.43	3.18
1017	1061	6.145534	CGAGGATGCTATTTTGCTTATCGTAA	59.854	38.462	0.00	0.00	31.31	3.18
1040	1084	1.771854	AGGAGCTAGGTCTGAGATCGA	59.228	52.381	20.67	0.00	29.85	3.59
1041	1085	2.270352	AGGAGCTAGGTCTGAGATCG	57.730	55.000	20.67	0.00	29.85	3.69
1042	1086	4.215109	AGAAAGGAGCTAGGTCTGAGATC	58.785	47.826	20.67	12.09	0.00	2.75
1046	1090	4.054359	AGAAGAAAGGAGCTAGGTCTGA	57.946	45.455	20.67	0.00	0.00	3.27
1083	1127	7.066645	TGAGAAATGCAAATGGAGAAGAGTATG	59.933	37.037	0.00	0.00	0.00	2.39
1179	1223	1.530323	TCTCAACGACGAGGTCATCA	58.470	50.000	0.00	0.00	33.59	3.07
1224	1268	1.963338	GCACTTGAAGCGGCAGACT	60.963	57.895	1.45	0.00	0.00	3.24
1392	1442	2.879026	GTCAAGTGAAGGGGAGACAAAC	59.121	50.000	0.00	0.00	0.00	2.93
1395	1445	2.103153	AGTCAAGTGAAGGGGAGACA	57.897	50.000	0.00	0.00	0.00	3.41
1407	1463	0.398318	GGACTGGCAGGAAGTCAAGT	59.602	55.000	20.34	0.00	44.86	3.16
1787	1855	2.840038	TGGGTGAGATAATGCAGACAGT	59.160	45.455	0.00	0.00	0.00	3.55
1843	1911	2.159627	CAGGTATGTTTCGGCACACTTC	59.840	50.000	0.00	0.00	0.00	3.01
1847	1915	1.609580	GGACAGGTATGTTTCGGCACA	60.610	52.381	0.00	0.00	40.68	4.57
1848	1916	1.084289	GGACAGGTATGTTTCGGCAC	58.916	55.000	0.00	0.00	40.68	5.01
1911	1979	4.757554	GCGTAATGCAAACGTCCC	57.242	55.556	21.44	6.19	45.45	4.46
1968	2036	4.652822	AGTCCTCAAGAACATAAACCACC	58.347	43.478	0.00	0.00	0.00	4.61
2035	2103	5.902613	AAACCATGTGATCCAACTACATG	57.097	39.130	13.54	13.54	46.89	3.21
2085	2156	6.044682	CCACTCAAACTTTTCTGCAAGATTT	58.955	36.000	0.00	0.00	46.36	2.17
2178	2249	3.190744	GGACTTGCCGACGATCTATATCA	59.809	47.826	0.00	0.00	31.93	2.15
2184	2255	0.108615	CTTGGACTTGCCGACGATCT	60.109	55.000	0.00	0.00	40.66	2.75
2218	2289	0.322636	GTCTCCCGAGTGTCCTCTCA	60.323	60.000	0.00	0.00	35.43	3.27
2247	2318	8.314021	TGTAACTCTGAGAACAATGACACATAT	58.686	33.333	12.44	0.00	0.00	1.78
2254	2325	8.397906	CAAAGTTTGTAACTCTGAGAACAATGA	58.602	33.333	21.77	11.65	41.91	2.57
2275	2420	3.503363	CCTATGTGTCATGTGTGCAAAGT	59.497	43.478	0.00	0.00	0.00	2.66
2293	2438	7.156694	TGGTATAAAGGCACCAATAACCTAT	57.843	36.000	0.00	0.00	41.83	2.57
2294	2439	6.578313	TGGTATAAAGGCACCAATAACCTA	57.422	37.500	0.00	0.00	41.83	3.08
2315	2462	1.630369	TCCTGTTGAGGATCCACTTGG	59.370	52.381	15.82	10.10	44.13	3.61
2331	2478	3.415212	TGGCAAGAAGAATTGACTCCTG	58.585	45.455	0.00	0.00	39.09	3.86
2377	2525	2.235898	TGCTCCAAAAACAAAAGCAGGT	59.764	40.909	0.00	0.00	38.01	4.00
2381	2529	4.944962	ACTTTGCTCCAAAAACAAAAGC	57.055	36.364	0.00	0.00	32.75	3.51
2408	2557	7.290248	AGCATTAGCCAAGTTAGGTCTAGAATA	59.710	37.037	0.00	0.00	43.56	1.75
2417	2566	3.567478	AGGAGCATTAGCCAAGTTAGG	57.433	47.619	0.00	0.00	43.56	2.69
2427	2576	5.975344	TCGAATAACAACGTAGGAGCATTAG	59.025	40.000	0.00	0.00	0.00	1.73
2430	2579	4.380841	TCGAATAACAACGTAGGAGCAT	57.619	40.909	0.00	0.00	0.00	3.79
2439	2588	7.304060	CGCTCATACAAATTTCGAATAACAACG	60.304	37.037	0.00	0.00	0.00	4.10
2463	2613	1.070309	CAAGAACACAGAGCAGAACGC	60.070	52.381	0.00	0.00	42.91	4.84
2465	2615	1.265365	GGCAAGAACACAGAGCAGAAC	59.735	52.381	0.00	0.00	0.00	3.01
2466	2616	1.141657	AGGCAAGAACACAGAGCAGAA	59.858	47.619	0.00	0.00	0.00	3.02
2467	2617	0.761187	AGGCAAGAACACAGAGCAGA	59.239	50.000	0.00	0.00	0.00	4.26
2473	2623	2.289002	GTGTGAAGAGGCAAGAACACAG	59.711	50.000	0.00	0.00	38.57	3.66
2475	2625	2.288666	TGTGTGAAGAGGCAAGAACAC	58.711	47.619	0.00	0.00	38.66	3.32
2479	2629	2.289882	CCATCTGTGTGAAGAGGCAAGA	60.290	50.000	0.00	0.00	0.00	3.02
2494	2644	3.216800	CCCAACATGTATGGACCATCTG	58.783	50.000	21.54	9.86	40.56	2.90
2496	2646	3.297134	ACCCAACATGTATGGACCATC	57.703	47.619	21.54	3.66	40.56	3.51
2502	2652	5.200483	ACTATGGAAACCCAACATGTATGG	58.800	41.667	15.95	15.95	37.24	2.74
2547	2712	5.422650	TGCCTTTTTCCAATCATGATGATGA	59.577	36.000	9.46	0.00	42.92	2.92
2548	2713	5.666462	TGCCTTTTTCCAATCATGATGATG	58.334	37.500	9.46	4.62	37.15	3.07
2613	2781	7.946381	TTATACATCCCACAACTGCAAATAA	57.054	32.000	0.00	0.00	0.00	1.40
2638	2806	2.639839	ACTAGGCCTGTCAACAAGATGT	59.360	45.455	17.99	0.00	0.00	3.06
2743	2911	6.380079	ACCTCAAGAAGACATGGACTTATT	57.620	37.500	0.00	3.45	30.53	1.40
2816	2984	1.819903	ACGGAAGAGAAGTACCTCAGC	59.180	52.381	2.53	0.00	35.68	4.26
2817	2985	3.082548	TGACGGAAGAGAAGTACCTCAG	58.917	50.000	2.53	0.00	35.68	3.35
2818	2986	3.082548	CTGACGGAAGAGAAGTACCTCA	58.917	50.000	2.53	0.00	35.68	3.86
2819	2987	2.159352	GCTGACGGAAGAGAAGTACCTC	60.159	54.545	0.00	0.00	0.00	3.85
2820	2988	1.819903	GCTGACGGAAGAGAAGTACCT	59.180	52.381	0.00	0.00	0.00	3.08
2821	2989	1.135053	GGCTGACGGAAGAGAAGTACC	60.135	57.143	0.00	0.00	0.00	3.34
2822	2990	1.135053	GGGCTGACGGAAGAGAAGTAC	60.135	57.143	0.00	0.00	0.00	2.73
2823	2991	1.183549	GGGCTGACGGAAGAGAAGTA	58.816	55.000	0.00	0.00	0.00	2.24
2857	3025	2.165845	ACAAGAGAGCCCACATACGTAC	59.834	50.000	0.00	0.00	0.00	3.67
2875	3043	8.087750	GTGTCCAAATAATTCCATCTTGAACAA	58.912	33.333	0.00	0.00	0.00	2.83
2879	3047	6.493166	AGGTGTCCAAATAATTCCATCTTGA	58.507	36.000	0.00	0.00	0.00	3.02
2892	3062	1.421268	TGCACTCTGAGGTGTCCAAAT	59.579	47.619	9.85	0.00	39.21	2.32
3180	6589	6.156519	GCCCGATGTTTCTTTCTTTAAATGT	58.843	36.000	0.00	0.00	0.00	2.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.