AutoCloner

Multiple sequence alignment - TraesCS1A01G073800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G073800	chr1A	100.000	3002	0	0	1	3002	57406834	57403833	0.000000e+00	5544
1	TraesCS1A01G073800	chr1A	90.720	1541	129	8	1029	2561	57640159	57638625	0.000000e+00	2041
2	TraesCS1A01G073800	chr1A	82.408	1171	193	13	1838	3002	36614129	36615292	0.000000e+00	1009
3	TraesCS1A01G073800	chr1A	95.981	423	11	6	567	985	538787831	538788251	0.000000e+00	682
4	TraesCS1A01G073800	chr1D	96.559	1976	64	4	1031	3002	58628629	58626654	0.000000e+00	3269
5	TraesCS1A01G073800	chr1D	90.886	1975	171	7	1031	3002	58764136	58762168	0.000000e+00	2641
6	TraesCS1A01G073800	chr1D	83.133	1162	186	10	1846	3002	38367077	38365921	0.000000e+00	1051
7	TraesCS1A01G073800	chr1D	82.916	1159	191	7	1847	3002	36623655	36622501	0.000000e+00	1037
8	TraesCS1A01G073800	chr1D	82.530	1162	193	10	1846	3002	38559351	38558195	0.000000e+00	1013
9	TraesCS1A01G073800	chr1D	93.798	516	23	5	1	511	58629242	58628731	0.000000e+00	767
10	TraesCS1A01G073800	chr1D	83.100	787	128	5	1066	1848	37964720	37963935	0.000000e+00	712
11	TraesCS1A01G073800	chr1D	83.205	780	120	11	1076	1848	36624534	36623759	0.000000e+00	704
12	TraesCS1A01G073800	chr1D	82.503	783	127	8	1076	1853	49426241	49425464	0.000000e+00	678
13	TraesCS1A01G073800	chr1D	82.071	792	126	14	1076	1856	38259614	38258828	0.000000e+00	662
14	TraesCS1A01G073800	chr1D	96.667	60	2	0	986	1045	58628705	58628646	1.900000e-17	100
15	TraesCS1A01G073800	chr1B	89.791	1959	194	4	1045	3002	94233210	94231257	0.000000e+00	2505
16	TraesCS1A01G073800	chr1B	81.543	1918	319	24	1088	3002	94327151	94325266	0.000000e+00	1548
17	TraesCS1A01G073800	chr1B	86.998	423	47	8	567	985	525831852	525831434	1.260000e-128	470
18	TraesCS1A01G073800	chr5D	90.323	403	35	4	585	985	340552485	340552885	2.650000e-145	525
19	TraesCS1A01G073800	chr5B	86.635	419	47	9	567	980	438015697	438016111	3.530000e-124	455
20	TraesCS1A01G073800	chr3D	86.288	423	48	9	567	985	482259754	482259338	4.560000e-123	451
21	TraesCS1A01G073800	chr3D	85.377	424	51	11	567	985	39616915	39617332	2.140000e-116	429
22	TraesCS1A01G073800	chr3D	85.407	418	53	8	567	980	39619219	39619632	7.690000e-116	427
23	TraesCS1A01G073800	chr2A	85.480	427	51	10	563	986	592859386	592858968	4.600000e-118	435
24	TraesCS1A01G073800	chr6A	84.870	423	55	8	567	985	74979165	74978748	4.630000e-113	418

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G073800	chr1A	57403833	57406834	3001	True	5544.000000	5544	100.000000	1	3002	1	chr1A.!!$R1	3001
1	TraesCS1A01G073800	chr1A	57638625	57640159	1534	True	2041.000000	2041	90.720000	1029	2561	1	chr1A.!!$R2	1532
2	TraesCS1A01G073800	chr1A	36614129	36615292	1163	False	1009.000000	1009	82.408000	1838	3002	1	chr1A.!!$F1	1164
3	TraesCS1A01G073800	chr1D	58762168	58764136	1968	True	2641.000000	2641	90.886000	1031	3002	1	chr1D.!!$R6	1971
4	TraesCS1A01G073800	chr1D	58626654	58629242	2588	True	1378.666667	3269	95.674667	1	3002	3	chr1D.!!$R8	3001
5	TraesCS1A01G073800	chr1D	38365921	38367077	1156	True	1051.000000	1051	83.133000	1846	3002	1	chr1D.!!$R3	1156
6	TraesCS1A01G073800	chr1D	38558195	38559351	1156	True	1013.000000	1013	82.530000	1846	3002	1	chr1D.!!$R4	1156
7	TraesCS1A01G073800	chr1D	36622501	36624534	2033	True	870.500000	1037	83.060500	1076	3002	2	chr1D.!!$R7	1926
8	TraesCS1A01G073800	chr1D	37963935	37964720	785	True	712.000000	712	83.100000	1066	1848	1	chr1D.!!$R1	782
9	TraesCS1A01G073800	chr1D	49425464	49426241	777	True	678.000000	678	82.503000	1076	1853	1	chr1D.!!$R5	777
10	TraesCS1A01G073800	chr1D	38258828	38259614	786	True	662.000000	662	82.071000	1076	1856	1	chr1D.!!$R2	780
11	TraesCS1A01G073800	chr1B	94231257	94233210	1953	True	2505.000000	2505	89.791000	1045	3002	1	chr1B.!!$R1	1957
12	TraesCS1A01G073800	chr1B	94325266	94327151	1885	True	1548.000000	1548	81.543000	1088	3002	1	chr1B.!!$R2	1914
13	TraesCS1A01G073800	chr3D	39616915	39619632	2717	False	428.000000	429	85.392000	567	985	2	chr3D.!!$F1	418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
522	528	0.109504	GACTCCTCTCAGTCACGCAC	60.11	60.0	0.00	0.00	42.25	5.34	F
991	3303	0.319900	CAGATATTCTCCCGGCCGTG	60.32	60.0	26.12	14.27	0.00	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1591	3943	0.904865	ACCATCTGGAGCAGGTCGAA	60.905	55.0	2.55	0.0	38.94	3.71	R
2737	5203	0.392706	TTCGCAGAAGCAGTTCTCCA	59.607	50.0	0.00	0.0	45.90	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
81	82	7.959689	ATCACATCAGTTTGATCTACATAGC	57.040	36.000	0.00	0.00	34.28	2.97
100	101	2.502538	AGCCATGCCTAAACATTGCAAT	59.497	40.909	5.99	5.99	40.27	3.56
141	142	9.703892	AGATTATCATAGTTGCACTTAGACATC	57.296	33.333	0.00	0.00	0.00	3.06
149	150	5.046735	AGTTGCACTTAGACATCTCTCACAT	60.047	40.000	0.00	0.00	0.00	3.21
158	159	9.814899	CTTAGACATCTCTCACATGAAAAGTAT	57.185	33.333	0.00	0.00	0.00	2.12
256	260	4.913924	GTGCTCAAAACAGACATCAATGAC	59.086	41.667	0.00	0.00	0.00	3.06
312	317	2.671396	ACACTTTATCGGCAATGTCGAC	59.329	45.455	13.56	9.11	44.04	4.20
475	481	2.680312	ATCACACGAGGAGACCATTG	57.320	50.000	0.00	0.00	0.00	2.82
482	488	1.192428	GAGGAGACCATTGTACCCGT	58.808	55.000	0.00	0.00	0.00	5.28
500	506	2.492001	CGTTTCCGATTTGTTACAGCG	58.508	47.619	0.00	0.00	35.63	5.18
501	507	2.723618	CGTTTCCGATTTGTTACAGCGG	60.724	50.000	14.19	14.19	43.11	5.52
505	511	1.659098	CCGATTTGTTACAGCGGAGAC	59.341	52.381	14.90	0.00	44.43	3.36
506	512	2.607187	CGATTTGTTACAGCGGAGACT	58.393	47.619	0.00	0.00	0.00	3.24
507	513	2.599082	CGATTTGTTACAGCGGAGACTC	59.401	50.000	0.00	0.00	0.00	3.36
508	514	2.450609	TTTGTTACAGCGGAGACTCC	57.549	50.000	11.87	11.87	0.00	3.85
509	515	1.629043	TTGTTACAGCGGAGACTCCT	58.371	50.000	19.39	3.08	33.30	3.69
510	516	1.174783	TGTTACAGCGGAGACTCCTC	58.825	55.000	19.39	11.77	38.70	3.71
511	517	1.271982	TGTTACAGCGGAGACTCCTCT	60.272	52.381	19.39	14.08	39.38	3.69
512	518	1.402613	GTTACAGCGGAGACTCCTCTC	59.597	57.143	19.39	8.32	42.25	3.20
513	519	0.618981	TACAGCGGAGACTCCTCTCA	59.381	55.000	19.39	4.26	44.50	3.27
514	520	0.679640	ACAGCGGAGACTCCTCTCAG	60.680	60.000	19.39	8.41	44.50	3.35
515	521	0.679640	CAGCGGAGACTCCTCTCAGT	60.680	60.000	19.39	0.00	44.50	3.41
516	522	0.393808	AGCGGAGACTCCTCTCAGTC	60.394	60.000	19.39	0.83	44.50	3.51
517	523	0.678366	GCGGAGACTCCTCTCAGTCA	60.678	60.000	19.39	0.00	44.50	3.41
518	524	1.091537	CGGAGACTCCTCTCAGTCAC	58.908	60.000	19.39	0.00	44.50	3.67
519	525	1.091537	GGAGACTCCTCTCAGTCACG	58.908	60.000	14.72	0.00	44.50	4.35
520	526	0.450184	GAGACTCCTCTCAGTCACGC	59.550	60.000	3.56	0.00	44.73	5.34
521	527	0.250945	AGACTCCTCTCAGTCACGCA	60.251	55.000	3.56	0.00	44.73	5.24
522	528	0.109504	GACTCCTCTCAGTCACGCAC	60.110	60.000	0.00	0.00	42.25	5.34
523	529	1.214062	CTCCTCTCAGTCACGCACC	59.786	63.158	0.00	0.00	0.00	5.01
524	530	1.228583	TCCTCTCAGTCACGCACCT	60.229	57.895	0.00	0.00	0.00	4.00
551	557	3.118454	ATTCCACCAGCGCGAACG	61.118	61.111	12.10	0.00	44.07	3.95
613	2924	1.139853	GGATACTCCTGGTGCTCCAAG	59.860	57.143	9.14	6.94	43.81	3.61
617	2928	2.054799	ACTCCTGGTGCTCCAAGTTTA	58.945	47.619	9.14	0.00	43.81	2.01
620	2931	3.486383	TCCTGGTGCTCCAAGTTTAAAG	58.514	45.455	9.14	0.00	43.81	1.85
624	2935	5.011023	CCTGGTGCTCCAAGTTTAAAGAAAT	59.989	40.000	9.14	0.00	43.81	2.17
625	2936	6.084326	TGGTGCTCCAAGTTTAAAGAAATC	57.916	37.500	4.68	0.00	41.25	2.17
626	2937	5.596361	TGGTGCTCCAAGTTTAAAGAAATCA	59.404	36.000	4.68	0.00	41.25	2.57
627	2938	5.920840	GGTGCTCCAAGTTTAAAGAAATCAC	59.079	40.000	0.00	0.00	0.00	3.06
629	2940	6.858478	GTGCTCCAAGTTTAAAGAAATCACTC	59.142	38.462	0.00	0.00	0.00	3.51
630	2941	6.545666	TGCTCCAAGTTTAAAGAAATCACTCA	59.454	34.615	0.00	0.00	0.00	3.41
631	2942	7.231317	TGCTCCAAGTTTAAAGAAATCACTCAT	59.769	33.333	0.00	0.00	0.00	2.90
692	3003	4.214545	CGCAAGAAATGTAACTACAACCCA	59.785	41.667	0.00	0.00	38.88	4.51
721	3032	2.688507	TCAGATCCAAACTCGAAGTGC	58.311	47.619	0.00	0.00	0.00	4.40
726	3037	2.571212	TCCAAACTCGAAGTGCACATT	58.429	42.857	21.04	10.39	0.00	2.71
765	3076	8.791675	TGTGAAATCTTGCATGAATAGTGTAAA	58.208	29.630	6.36	0.00	0.00	2.01
776	3087	9.334693	GCATGAATAGTGTAAAGAAAAAGACAG	57.665	33.333	0.00	0.00	0.00	3.51
784	3095	8.122952	AGTGTAAAGAAAAAGACAGAATCAACG	58.877	33.333	0.00	0.00	0.00	4.10
785	3096	6.910433	TGTAAAGAAAAAGACAGAATCAACGC	59.090	34.615	0.00	0.00	0.00	4.84
788	3099	3.904136	AAAAGACAGAATCAACGCTGG	57.096	42.857	0.00	0.00	36.47	4.85
796	3107	2.939103	AGAATCAACGCTGGCACTATTC	59.061	45.455	0.00	0.00	0.00	1.75
832	3143	9.645059	TTTCACATTTTTGTTTCTCAATGTACA	57.355	25.926	0.00	0.00	35.84	2.90
856	3167	7.828717	ACATTTCAAGTTTGGACCTGAAATTTT	59.171	29.630	13.33	4.49	46.90	1.82
861	3172	7.343316	TCAAGTTTGGACCTGAAATTTTTAGGA	59.657	33.333	22.76	2.07	35.55	2.94
869	3180	7.215719	ACCTGAAATTTTTAGGAGTTGTAGC	57.784	36.000	22.76	0.00	35.55	3.58
890	3201	2.228582	CCACATTCCTTGCGAACATTCA	59.771	45.455	0.00	0.00	31.79	2.57
897	3208	5.697473	TCCTTGCGAACATTCACATTTTA	57.303	34.783	0.00	0.00	0.00	1.52
899	3210	6.686630	TCCTTGCGAACATTCACATTTTATT	58.313	32.000	0.00	0.00	0.00	1.40
900	3211	6.806249	TCCTTGCGAACATTCACATTTTATTC	59.194	34.615	0.00	0.00	0.00	1.75
902	3213	5.092105	TGCGAACATTCACATTTTATTCCG	58.908	37.500	0.00	0.00	0.00	4.30
903	3214	5.106515	TGCGAACATTCACATTTTATTCCGA	60.107	36.000	0.00	0.00	0.00	4.55
904	3215	5.797934	GCGAACATTCACATTTTATTCCGAA	59.202	36.000	0.00	0.00	0.00	4.30
905	3216	6.306837	GCGAACATTCACATTTTATTCCGAAA	59.693	34.615	0.00	0.00	0.00	3.46
906	3217	7.009174	GCGAACATTCACATTTTATTCCGAAAT	59.991	33.333	0.00	0.00	0.00	2.17
955	3266	0.691078	ACATGGAGCACCGGGAGTAT	60.691	55.000	6.32	0.00	39.42	2.12
956	3267	1.338107	CATGGAGCACCGGGAGTATA	58.662	55.000	6.32	0.00	39.42	1.47
966	3278	4.350245	CACCGGGAGTATATAAGGATGGA	58.650	47.826	6.32	0.00	0.00	3.41
985	3297	3.895656	TGGAAGTACCAGATATTCTCCCG	59.104	47.826	0.00	0.00	44.64	5.14
986	3298	3.258622	GGAAGTACCAGATATTCTCCCGG	59.741	52.174	0.00	0.00	38.79	5.73
987	3299	2.249139	AGTACCAGATATTCTCCCGGC	58.751	52.381	0.00	0.00	0.00	6.13
988	3300	1.275573	GTACCAGATATTCTCCCGGCC	59.724	57.143	0.00	0.00	0.00	6.13
989	3301	1.293498	CCAGATATTCTCCCGGCCG	59.707	63.158	21.04	21.04	0.00	6.13
990	3302	1.472662	CCAGATATTCTCCCGGCCGT	61.473	60.000	26.12	6.67	0.00	5.68
991	3303	0.319900	CAGATATTCTCCCGGCCGTG	60.320	60.000	26.12	14.27	0.00	4.94
992	3304	1.668151	GATATTCTCCCGGCCGTGC	60.668	63.158	26.12	0.00	0.00	5.34
993	3305	3.178540	ATATTCTCCCGGCCGTGCC	62.179	63.158	26.12	4.96	46.75	5.01
1043	3389	4.247380	CATGCTCCGCCTCCTCCC	62.247	72.222	0.00	0.00	0.00	4.30
1065	3412	4.473520	CCTTCACGCCGCTGGGAT	62.474	66.667	0.00	0.00	34.06	3.85
1158	3507	3.192001	ACCTGTTCGACGAATTGCTACTA	59.808	43.478	14.27	0.00	0.00	1.82
1326	3678	4.624364	CCGCCCACAGTCTGCACA	62.624	66.667	0.00	0.00	0.00	4.57
1406	3758	0.970937	TTCGACCGCTTCCTCAGGAT	60.971	55.000	0.00	0.00	0.00	3.24
1670	4025	4.380839	CGTATAGCACAGTGATTCATGC	57.619	45.455	4.15	3.08	38.39	4.06
1704	4059	1.538687	GGGAAGCAAGCAAGGCATGT	61.539	55.000	0.00	0.00	29.47	3.21
1994	4460	3.381908	ACTCTTCTTCACGGGTATGCTAG	59.618	47.826	0.00	0.00	0.00	3.42
1999	4465	1.037493	TCACGGGTATGCTAGCGAAT	58.963	50.000	10.77	1.11	0.00	3.34
2438	4904	5.703130	GCAAAGAAGGAAGAGTTACAGATGT	59.297	40.000	0.00	0.00	0.00	3.06
2679	5145	7.134163	CACTATTCAGCGAAATGATGCATAAA	58.866	34.615	0.00	0.00	32.78	1.40
2737	5203	3.634910	ACTAAATGGGTTGTTTCGTGCTT	59.365	39.130	0.00	0.00	0.00	3.91
2833	5299	8.819643	ATACGCTATAATTCTTGAAGGACTTC	57.180	34.615	5.14	5.14	39.91	3.01
2848	5314	6.876789	TGAAGGACTTCGTAGAAATAATTGCA	59.123	34.615	7.49	0.00	45.90	4.08

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
81	82	6.108015	AGTTTATTGCAATGTTTAGGCATGG	58.892	36.000	22.27	0.00	37.39	3.66
214	218	9.539825	TTGAGCACTTAAAATTTTGAATTAGCA	57.460	25.926	13.76	2.35	0.00	3.49
231	235	5.300034	TCATTGATGTCTGTTTTGAGCACTT	59.700	36.000	0.00	0.00	0.00	3.16
286	290	5.901884	CGACATTGCCGATAAAGTGTTTATC	59.098	40.000	8.70	8.70	45.05	1.75
291	295	2.671396	GTCGACATTGCCGATAAAGTGT	59.329	45.455	11.55	0.00	38.38	3.55
292	296	2.670905	TGTCGACATTGCCGATAAAGTG	59.329	45.455	15.76	0.00	38.38	3.16
301	306	3.326747	AGTTTCTACTGTCGACATTGCC	58.673	45.455	20.40	3.82	31.99	4.52
312	317	5.939883	TGTCATCCCAAATGAGTTTCTACTG	59.060	40.000	0.00	0.00	33.84	2.74
420	425	9.613428	TCTCATACAATGAAATCCGTCTTTTAT	57.387	29.630	0.00	0.00	39.11	1.40
462	468	0.102481	CGGGTACAATGGTCTCCTCG	59.898	60.000	0.00	0.00	0.00	4.63
482	488	2.739913	CTCCGCTGTAACAAATCGGAAA	59.260	45.455	3.27	0.00	46.85	3.13
505	511	1.214062	GGTGCGTGACTGAGAGGAG	59.786	63.158	0.00	0.00	0.00	3.69
506	512	1.228583	AGGTGCGTGACTGAGAGGA	60.229	57.895	0.00	0.00	0.00	3.71
507	513	1.214062	GAGGTGCGTGACTGAGAGG	59.786	63.158	0.00	0.00	0.00	3.69
508	514	0.170116	GAGAGGTGCGTGACTGAGAG	59.830	60.000	0.00	0.00	0.00	3.20
509	515	1.244697	GGAGAGGTGCGTGACTGAGA	61.245	60.000	0.00	0.00	0.00	3.27
510	516	1.214062	GGAGAGGTGCGTGACTGAG	59.786	63.158	0.00	0.00	0.00	3.35
511	517	1.228583	AGGAGAGGTGCGTGACTGA	60.229	57.895	0.00	0.00	0.00	3.41
512	518	1.214062	GAGGAGAGGTGCGTGACTG	59.786	63.158	0.00	0.00	0.00	3.51
513	519	1.228583	TGAGGAGAGGTGCGTGACT	60.229	57.895	0.00	0.00	0.00	3.41
514	520	1.080434	GTGAGGAGAGGTGCGTGAC	60.080	63.158	0.00	0.00	0.00	3.67
515	521	2.276116	GGTGAGGAGAGGTGCGTGA	61.276	63.158	0.00	0.00	0.00	4.35
516	522	1.892819	ATGGTGAGGAGAGGTGCGTG	61.893	60.000	0.00	0.00	0.00	5.34
517	523	1.194781	AATGGTGAGGAGAGGTGCGT	61.195	55.000	0.00	0.00	0.00	5.24
518	524	0.460987	GAATGGTGAGGAGAGGTGCG	60.461	60.000	0.00	0.00	0.00	5.34
519	525	0.107459	GGAATGGTGAGGAGAGGTGC	60.107	60.000	0.00	0.00	0.00	5.01
520	526	1.065854	GTGGAATGGTGAGGAGAGGTG	60.066	57.143	0.00	0.00	0.00	4.00
521	527	1.280457	GTGGAATGGTGAGGAGAGGT	58.720	55.000	0.00	0.00	0.00	3.85
522	528	0.543749	GGTGGAATGGTGAGGAGAGG	59.456	60.000	0.00	0.00	0.00	3.69
523	529	1.209019	CTGGTGGAATGGTGAGGAGAG	59.791	57.143	0.00	0.00	0.00	3.20
524	530	1.279496	CTGGTGGAATGGTGAGGAGA	58.721	55.000	0.00	0.00	0.00	3.71
602	2913	5.596361	TGATTTCTTTAAACTTGGAGCACCA	59.404	36.000	0.00	0.00	45.34	4.17
661	2972	9.157104	TGTAGTTACATTTCTTGCGATCATTTA	57.843	29.630	0.00	0.00	0.00	1.40
667	2978	5.123344	GGGTTGTAGTTACATTTCTTGCGAT	59.877	40.000	0.00	0.00	35.89	4.58
699	3010	3.686726	GCACTTCGAGTTTGGATCTGAAT	59.313	43.478	0.00	0.00	0.00	2.57
705	3016	2.254546	TGTGCACTTCGAGTTTGGAT	57.745	45.000	19.41	0.00	0.00	3.41
714	3025	6.804534	TTTTGTTTCTTAATGTGCACTTCG	57.195	33.333	19.41	4.55	0.00	3.79
726	3037	9.376075	TGCAAGATTTCACATTTTTGTTTCTTA	57.624	25.926	0.00	0.00	0.00	2.10
749	3060	8.845227	TGTCTTTTTCTTTACACTATTCATGCA	58.155	29.630	0.00	0.00	0.00	3.96
750	3061	9.334693	CTGTCTTTTTCTTTACACTATTCATGC	57.665	33.333	0.00	0.00	0.00	4.06
765	3076	4.023707	CCAGCGTTGATTCTGTCTTTTTCT	60.024	41.667	0.00	0.00	0.00	2.52
776	3087	2.677836	TGAATAGTGCCAGCGTTGATTC	59.322	45.455	0.00	2.36	0.00	2.52
784	3095	1.945394	CCAGATGTGAATAGTGCCAGC	59.055	52.381	0.00	0.00	0.00	4.85
785	3096	3.548745	TCCAGATGTGAATAGTGCCAG	57.451	47.619	0.00	0.00	0.00	4.85
788	3099	5.355071	TGTGAAATCCAGATGTGAATAGTGC	59.645	40.000	0.00	0.00	0.00	4.40
796	3107	7.718272	AACAAAAATGTGAAATCCAGATGTG	57.282	32.000	0.00	0.00	0.00	3.21
837	3148	7.344612	ACTCCTAAAAATTTCAGGTCCAAACTT	59.655	33.333	15.08	0.00	0.00	2.66
856	3167	3.844211	AGGAATGTGGCTACAACTCCTAA	59.156	43.478	26.27	0.00	44.83	2.69
861	3172	2.162681	GCAAGGAATGTGGCTACAACT	58.837	47.619	7.10	3.22	40.84	3.16
869	3180	2.228582	TGAATGTTCGCAAGGAATGTGG	59.771	45.455	0.00	0.00	40.07	4.17
926	3237	5.163457	CCCGGTGCTCCATGTTTAAAAATAT	60.163	40.000	0.00	0.00	0.00	1.28
928	3239	3.056179	CCCGGTGCTCCATGTTTAAAAAT	60.056	43.478	0.00	0.00	0.00	1.82
934	3245	1.002134	CTCCCGGTGCTCCATGTTT	60.002	57.895	0.00	0.00	0.00	2.83
938	3249	2.327325	ATATACTCCCGGTGCTCCAT	57.673	50.000	0.00	0.00	0.00	3.41
941	3252	3.428532	TCCTTATATACTCCCGGTGCTC	58.571	50.000	0.00	0.00	0.00	4.26
956	3267	8.980832	AGAATATCTGGTACTTCCATCCTTAT	57.019	34.615	0.00	0.00	46.12	1.73
966	3278	2.633481	GCCGGGAGAATATCTGGTACTT	59.367	50.000	2.18	0.00	0.00	2.24
988	3300	4.511246	AGGCATGGGATGGGCACG	62.511	66.667	0.00	0.00	0.00	5.34
989	3301	2.520260	GAGGCATGGGATGGGCAC	60.520	66.667	0.00	0.00	0.00	5.01
990	3302	4.193893	CGAGGCATGGGATGGGCA	62.194	66.667	0.00	0.00	0.00	5.36
992	3304	4.962836	GGCGAGGCATGGGATGGG	62.963	72.222	0.00	0.00	0.00	4.00
993	3305	3.839353	GAGGCGAGGCATGGGATGG	62.839	68.421	0.00	0.00	0.00	3.51
994	3306	1.475169	TAGAGGCGAGGCATGGGATG	61.475	60.000	0.00	0.00	0.00	3.51
995	3307	1.152247	TAGAGGCGAGGCATGGGAT	60.152	57.895	0.00	0.00	0.00	3.85
1048	3394	4.473520	ATCCCAGCGGCGTGAAGG	62.474	66.667	9.37	4.84	0.00	3.46
1365	3717	3.081409	GCAAGGCCTAGGTCCGGA	61.081	66.667	10.56	0.00	0.00	5.14
1391	3743	2.370445	CCCATCCTGAGGAAGCGGT	61.370	63.158	4.76	0.00	34.34	5.68
1474	3826	1.596260	CAGCACGTTGATAGCCTCATG	59.404	52.381	0.00	0.00	32.72	3.07
1591	3943	0.904865	ACCATCTGGAGCAGGTCGAA	60.905	55.000	2.55	0.00	38.94	3.71
1670	4025	4.407365	TGCTTCCCCTTCCTTAAAGAAAG	58.593	43.478	0.00	0.00	37.12	2.62
1704	4059	6.368779	TGCATCATCTCATGGAATAGATCA	57.631	37.500	0.00	0.00	29.93	2.92
1936	4402	2.911552	TTAGGTTTAAGGCCCTTGGG	57.088	50.000	6.16	0.32	32.08	4.12
1947	4413	7.792374	AGAGTACACGACGATATTAGGTTTA	57.208	36.000	0.00	0.00	0.00	2.01
1994	4460	4.628766	TCATATCAGCTAAGCATCATTCGC	59.371	41.667	0.00	0.00	0.00	4.70
1999	4465	9.597170	GAGATTAATCATATCAGCTAAGCATCA	57.403	33.333	17.56	0.00	0.00	3.07
2438	4904	3.762288	AGCCAAGTCGAAGATACTGTGTA	59.238	43.478	0.00	0.00	40.67	2.90
2737	5203	0.392706	TTCGCAGAAGCAGTTCTCCA	59.607	50.000	0.00	0.00	45.90	3.86
2833	5299	6.630443	GCTTCATCAGTGCAATTATTTCTACG	59.370	38.462	0.00	0.00	0.00	3.51
2848	5314	1.736126	CAGCGTGATTGCTTCATCAGT	59.264	47.619	0.00	0.00	44.46	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.