Multiple sequence alignment - TraesCS1A01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G072700 chr1A 100.000 4404 0 0 1 4404 56628873 56624470 0.000000e+00 8133.0
1 TraesCS1A01G072700 chr1A 100.000 4399 0 0 4630 9028 56624244 56619846 0.000000e+00 8124.0
2 TraesCS1A01G072700 chr1A 86.667 825 63 18 985 1779 56918350 56919157 0.000000e+00 870.0
3 TraesCS1A01G072700 chr1A 80.311 579 95 15 7146 7722 56923028 56923589 3.900000e-113 420.0
4 TraesCS1A01G072700 chr1A 82.127 442 41 27 1892 2301 56919346 56919781 2.410000e-90 344.0
5 TraesCS1A01G072700 chr1A 90.217 184 16 2 87 269 3587747 3587929 1.170000e-58 239.0
6 TraesCS1A01G072700 chr1A 90.991 111 8 2 5040 5149 186714638 186714747 2.030000e-31 148.0
7 TraesCS1A01G072700 chr1A 87.912 91 8 2 5521 5608 518662849 518662759 4.460000e-18 104.0
8 TraesCS1A01G072700 chr1A 95.833 48 0 1 1782 1827 56919181 56919228 9.720000e-10 76.8
9 TraesCS1A01G072700 chr1A 84.211 76 7 3 4739 4812 56920514 56920586 1.630000e-07 69.4
10 TraesCS1A01G072700 chr1D 94.735 3571 123 27 841 4404 57506855 57503343 0.000000e+00 5493.0
11 TraesCS1A01G072700 chr1D 93.237 3105 142 28 5146 8208 57502872 57499794 0.000000e+00 4508.0
12 TraesCS1A01G072700 chr1D 89.550 823 50 12 8210 9028 57499761 57498971 0.000000e+00 1011.0
13 TraesCS1A01G072700 chr1D 89.826 747 68 7 4 748 57522871 57522131 0.000000e+00 952.0
14 TraesCS1A01G072700 chr1D 85.344 887 64 28 985 1827 57954725 57955589 0.000000e+00 857.0
15 TraesCS1A01G072700 chr1D 80.046 877 119 29 7143 8014 57959920 57960745 4.660000e-167 599.0
16 TraesCS1A01G072700 chr1D 89.633 463 6 9 4630 5064 57503318 57502870 1.320000e-152 551.0
17 TraesCS1A01G072700 chr1D 81.903 431 41 26 1892 2301 57955703 57956117 6.760000e-86 329.0
18 TraesCS1A01G072700 chr1D 82.927 246 35 4 272 510 460758299 460758544 1.970000e-51 215.0
19 TraesCS1A01G072700 chr1D 93.269 104 4 3 746 849 57509276 57509176 5.650000e-32 150.0
20 TraesCS1A01G072700 chr1D 80.952 147 13 9 2310 2442 355173959 355174104 1.600000e-17 102.0
21 TraesCS1A01G072700 chr1D 84.466 103 14 2 6205 6306 81453945 81454046 5.770000e-17 100.0
22 TraesCS1A01G072700 chr1D 89.189 74 7 1 4736 4809 57956940 57957012 3.470000e-14 91.6
23 TraesCS1A01G072700 chr1D 79.646 113 23 0 2911 3023 492885845 492885733 2.090000e-11 82.4
24 TraesCS1A01G072700 chr1D 82.500 80 11 3 2463 2539 57956097 57956176 5.850000e-07 67.6
25 TraesCS1A01G072700 chr1B 90.749 1935 137 20 6299 8208 92877475 92875558 0.000000e+00 2543.0
26 TraesCS1A01G072700 chr1B 94.429 1095 40 5 926 2004 92883178 92882089 0.000000e+00 1664.0
27 TraesCS1A01G072700 chr1B 88.728 896 73 14 3532 4404 92880616 92879726 0.000000e+00 1070.0
28 TraesCS1A01G072700 chr1B 85.118 887 66 28 985 1827 93290512 93291376 0.000000e+00 846.0
29 TraesCS1A01G072700 chr1B 80.479 876 117 28 7142 8014 93295139 93295963 9.960000e-174 621.0
30 TraesCS1A01G072700 chr1B 81.418 705 86 17 2826 3520 92881326 92880657 1.330000e-147 534.0
31 TraesCS1A01G072700 chr1B 85.464 399 24 12 8210 8598 92875525 92875151 1.420000e-102 385.0
32 TraesCS1A01G072700 chr1B 82.232 439 38 28 1892 2301 93291490 93291917 8.680000e-90 342.0
33 TraesCS1A01G072700 chr1B 89.328 253 22 4 5750 6001 92878041 92877793 6.810000e-81 313.0
34 TraesCS1A01G072700 chr1B 87.640 267 25 3 5146 5409 92879044 92878783 4.100000e-78 303.0
35 TraesCS1A01G072700 chr1B 96.842 95 3 0 5058 5152 668678533 668678439 9.380000e-35 159.0
36 TraesCS1A01G072700 chr1B 90.244 123 8 2 813 934 92883696 92883577 3.370000e-34 158.0
37 TraesCS1A01G072700 chr1B 82.000 150 20 4 3575 3717 93292011 93292160 4.430000e-23 121.0
38 TraesCS1A01G072700 chr4D 79.707 547 93 13 3021 3560 315078035 315077500 6.620000e-101 379.0
39 TraesCS1A01G072700 chr4D 82.396 409 52 11 122 510 499746930 499746522 1.120000e-88 339.0
40 TraesCS1A01G072700 chr4D 93.694 111 6 1 5059 5168 216743554 216743444 2.020000e-36 165.0
41 TraesCS1A01G072700 chr4D 93.458 107 5 2 5058 5163 101653923 101653818 3.370000e-34 158.0
42 TraesCS1A01G072700 chr4D 89.773 88 6 2 5523 5607 423945400 423945313 9.580000e-20 110.0
43 TraesCS1A01G072700 chr4D 81.818 99 12 2 2321 2419 365865475 365865383 2.700000e-10 78.7
44 TraesCS1A01G072700 chr7B 78.455 492 90 14 3021 3504 60612729 60613212 3.170000e-79 307.0
45 TraesCS1A01G072700 chr7B 81.013 316 41 9 277 590 730269140 730268842 5.450000e-57 233.0
46 TraesCS1A01G072700 chr7B 86.139 202 28 0 81 282 509561072 509561273 1.530000e-52 219.0
47 TraesCS1A01G072700 chr7B 89.247 93 8 2 5517 5609 566635051 566634961 2.060000e-21 115.0
48 TraesCS1A01G072700 chr7B 89.130 92 6 3 5515 5606 84186602 84186515 2.660000e-20 111.0
49 TraesCS1A01G072700 chr7B 82.456 114 17 3 2911 3023 527855453 527855342 7.460000e-16 97.1
50 TraesCS1A01G072700 chr7B 80.000 115 23 0 2909 3023 500250769 500250655 1.620000e-12 86.1
51 TraesCS1A01G072700 chr6B 76.592 534 104 16 3020 3541 538943262 538943786 3.210000e-69 274.0
52 TraesCS1A01G072700 chr6B 87.701 187 21 2 80 266 549189296 549189112 5.490000e-52 217.0
53 TraesCS1A01G072700 chr6B 87.755 98 7 5 5513 5610 501774047 501773955 9.580000e-20 110.0
54 TraesCS1A01G072700 chr6B 86.111 72 7 2 5988 6059 563287130 563287062 3.500000e-09 75.0
55 TraesCS1A01G072700 chr6D 76.536 537 101 20 3020 3541 357342041 357342567 4.150000e-68 270.0
56 TraesCS1A01G072700 chr6D 81.287 171 24 4 6140 6308 445759177 445759341 2.050000e-26 132.0
57 TraesCS1A01G072700 chr6A 77.119 472 90 13 3021 3483 499587749 499588211 3.230000e-64 257.0
58 TraesCS1A01G072700 chr6A 82.051 195 29 5 6120 6308 592346497 592346303 2.610000e-35 161.0
59 TraesCS1A01G072700 chr6A 96.739 92 3 0 5057 5148 51946462 51946553 4.370000e-33 154.0
60 TraesCS1A01G072700 chr6A 84.286 140 20 2 2313 2452 181560694 181560831 1.580000e-27 135.0
61 TraesCS1A01G072700 chr3D 90.155 193 19 0 90 282 583099032 583099224 1.500000e-62 252.0
62 TraesCS1A01G072700 chr3D 87.000 200 26 0 91 290 577221186 577220987 9.120000e-55 226.0
63 TraesCS1A01G072700 chr3D 83.333 192 28 3 6120 6308 58397735 58397545 3.350000e-39 174.0
64 TraesCS1A01G072700 chr3D 79.581 191 33 4 6120 6308 475783210 475783024 2.050000e-26 132.0
65 TraesCS1A01G072700 chr3D 81.818 154 16 6 2312 2453 12422735 12422888 1.590000e-22 119.0
66 TraesCS1A01G072700 chr3D 79.518 166 28 5 6090 6253 595765022 595765183 7.410000e-21 113.0
67 TraesCS1A01G072700 chr3D 87.368 95 8 3 5519 5609 66523469 66523375 1.240000e-18 106.0
68 TraesCS1A01G072700 chr3D 83.495 103 17 0 2921 3023 36974402 36974504 7.460000e-16 97.1
69 TraesCS1A01G072700 chr3B 88.776 196 21 1 80 274 448352232 448352037 1.170000e-58 239.0
70 TraesCS1A01G072700 chr3B 78.404 213 40 6 6090 6300 798973656 798973864 5.690000e-27 134.0
71 TraesCS1A01G072700 chr2B 87.179 195 25 0 80 274 26460905 26461099 1.180000e-53 222.0
72 TraesCS1A01G072700 chr2B 90.099 101 10 0 287 387 47254159 47254059 2.050000e-26 132.0
73 TraesCS1A01G072700 chr2D 84.279 229 33 3 283 509 600153252 600153479 4.240000e-53 220.0
74 TraesCS1A01G072700 chr2D 100.000 28 0 0 2569 2596 27061424 27061397 1.600000e-02 52.8
75 TraesCS1A01G072700 chr5D 85.047 214 26 5 80 289 277635720 277635931 7.100000e-51 213.0
76 TraesCS1A01G072700 chr5D 83.459 133 16 5 2331 2463 496552824 496552698 1.590000e-22 119.0
77 TraesCS1A01G072700 chr5D 81.416 113 21 0 2911 3023 526037285 526037397 9.650000e-15 93.5
78 TraesCS1A01G072700 chr4A 81.641 256 41 5 3021 3274 578217997 578218248 3.300000e-49 207.0
79 TraesCS1A01G072700 chr5B 82.222 225 39 1 287 510 94650763 94650539 9.250000e-45 193.0
80 TraesCS1A01G072700 chr5B 89.773 88 6 2 5524 5608 411034777 411034864 9.580000e-20 110.0
81 TraesCS1A01G072700 chr7D 80.833 240 40 6 3039 3274 174677707 174677470 5.570000e-42 183.0
82 TraesCS1A01G072700 chr7D 78.125 224 46 3 262 483 167096176 167095954 1.220000e-28 139.0
83 TraesCS1A01G072700 chr7D 78.646 192 33 5 6120 6308 533486163 533485977 4.430000e-23 121.0
84 TraesCS1A01G072700 chr7D 90.698 86 5 2 5522 5606 29876373 29876456 2.660000e-20 111.0
85 TraesCS1A01G072700 chr7D 78.400 125 24 3 2900 3023 187245304 187245182 2.700000e-10 78.7
86 TraesCS1A01G072700 chr2A 100.000 90 0 0 5060 5149 442579615 442579526 5.610000e-37 167.0
87 TraesCS1A01G072700 chr2A 73.077 260 49 12 3041 3286 669836701 669836953 1.260000e-08 73.1
88 TraesCS1A01G072700 chr7A 79.832 238 37 8 6075 6305 55425311 55425078 7.250000e-36 163.0
89 TraesCS1A01G072700 chr7A 80.000 210 36 6 6104 6308 44970010 44970218 5.650000e-32 150.0
90 TraesCS1A01G072700 chr7A 79.310 116 24 0 2907 3022 720123722 720123607 2.090000e-11 82.4
91 TraesCS1A01G072700 chr7A 89.130 46 5 0 5988 6033 458734598 458734643 3.520000e-04 58.4
92 TraesCS1A01G072700 chr4B 98.901 91 1 0 5059 5149 6010022 6009932 7.250000e-36 163.0
93 TraesCS1A01G072700 chr4B 96.875 96 2 1 5060 5154 255382696 255382791 9.380000e-35 159.0
94 TraesCS1A01G072700 chr4B 89.076 119 7 5 5048 5165 286079582 286079469 9.450000e-30 143.0
95 TraesCS1A01G072700 chr5A 79.915 234 32 8 276 507 592204067 592204287 3.370000e-34 158.0
96 TraesCS1A01G072700 chr5A 80.208 192 25 10 6121 6308 679369294 679369476 2.050000e-26 132.0
97 TraesCS1A01G072700 chr5A 84.483 116 16 2 2311 2426 620406420 620406307 7.410000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G072700 chr1A 56619846 56628873 9027 True 8128.50 8133 100.00000 1 9028 2 chr1A.!!$R2 9027
1 TraesCS1A01G072700 chr1A 56918350 56923589 5239 False 356.04 870 85.82980 985 7722 5 chr1A.!!$F3 6737
2 TraesCS1A01G072700 chr1D 57498971 57509276 10305 True 2342.60 5493 92.08480 746 9028 5 chr1D.!!$R3 8282
3 TraesCS1A01G072700 chr1D 57522131 57522871 740 True 952.00 952 89.82600 4 748 1 chr1D.!!$R1 744
4 TraesCS1A01G072700 chr1D 57954725 57960745 6020 False 388.84 857 83.79640 985 8014 5 chr1D.!!$F4 7029
5 TraesCS1A01G072700 chr1B 92875151 92883696 8545 True 871.25 2543 88.50000 813 8598 8 chr1B.!!$R2 7785
6 TraesCS1A01G072700 chr1B 93290512 93295963 5451 False 482.50 846 82.45725 985 8014 4 chr1B.!!$F1 7029
7 TraesCS1A01G072700 chr4D 315077500 315078035 535 True 379.00 379 79.70700 3021 3560 1 chr4D.!!$R3 539
8 TraesCS1A01G072700 chr6B 538943262 538943786 524 False 274.00 274 76.59200 3020 3541 1 chr6B.!!$F1 521
9 TraesCS1A01G072700 chr6D 357342041 357342567 526 False 270.00 270 76.53600 3020 3541 1 chr6D.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 601 0.035534 TGCGAGCCTGGCTAAAATCA 60.036 50.000 23.44 11.92 39.88 2.57 F
617 620 1.067582 GTGACGAATCTAGCGGGGG 59.932 63.158 0.00 0.00 0.00 5.40 F
1779 4561 0.107993 CTCTGCAGCCTTGGATTCGA 60.108 55.000 9.47 0.00 0.00 3.71 F
2067 4992 1.492133 TAGACTTTGCAGGCTGGGCT 61.492 55.000 17.64 9.39 39.58 5.19 F
2700 5674 0.457035 CATCAAATGTCCGCCCTTGG 59.543 55.000 0.00 0.00 0.00 3.61 F
2703 5677 0.609131 CAAATGTCCGCCCTTGGTCT 60.609 55.000 0.00 0.00 0.00 3.85 F
3544 6570 0.907704 TAGGGGCGTGTTGATGGACT 60.908 55.000 0.00 0.00 0.00 3.85 F
5072 9171 0.460311 GGTCACATGTACTCCCTCCG 59.540 60.000 0.00 0.00 0.00 4.63 F
5676 10512 0.790207 GGTGAGTATGCGTGTGTGTG 59.210 55.000 0.00 0.00 0.00 3.82 F
6493 12172 0.969894 AGCTGTAGTTCCGAGTGCTT 59.030 50.000 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 4537 0.913451 ATCCAAGGCTGCAGAGGACT 60.913 55.000 20.43 6.36 0.00 3.85 R
2442 5409 1.201181 AGCGTGTGTCTAGCTCTCAAG 59.799 52.381 0.00 0.00 36.33 3.02 R
2654 5628 0.575848 TTGGATGGCCTCCCCCTATA 59.424 55.000 15.98 0.00 44.23 1.31 R
3233 6221 1.155390 AGACCTTGTCGGACCTCCA 59.845 57.895 5.55 0.00 37.67 3.86 R
3544 6570 2.551270 ACTTAGGGCATCTCCAACTCA 58.449 47.619 0.00 0.00 36.21 3.41 R
3801 6876 3.066380 CCACAAATGCTAAAACCTTGGC 58.934 45.455 0.00 0.00 39.38 4.52 R
5133 9232 0.389757 GCTCATACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62 R
6446 12122 0.676466 TTTGACACATAGCGGCTGGG 60.676 55.000 13.86 6.97 0.00 4.45 R
7294 13130 0.934496 TGCACAGAAACTACACGCAC 59.066 50.000 0.00 0.00 0.00 5.34 R
8146 14042 0.532862 GCAGCGCCCATGTACTACAT 60.533 55.000 2.29 0.00 39.91 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.082463 CGGTAGAGTCTTCTTGCTCTTCTT 60.082 45.833 0.00 0.00 41.70 2.52
102 105 1.789464 GTCATCCGTGCAGAATCGATC 59.211 52.381 0.00 0.00 0.00 3.69
136 139 0.255890 AATCCAATCCTCCACCCACG 59.744 55.000 0.00 0.00 0.00 4.94
166 169 0.922738 TCCCCTCCCTAACTCTCCGA 60.923 60.000 0.00 0.00 0.00 4.55
178 181 2.951745 CTCCGATCGCGTGCTCAC 60.952 66.667 10.32 0.00 35.23 3.51
204 207 0.374063 TCTAGCTCGAGTCGAAAGCG 59.626 55.000 17.27 5.91 34.74 4.68
214 217 4.036027 TCGAGTCGAAAGCGGTAAATCTAT 59.964 41.667 13.98 0.00 38.28 1.98
218 221 6.670233 AGTCGAAAGCGGTAAATCTATAGAG 58.330 40.000 8.70 0.00 38.28 2.43
260 263 2.584418 CGATGCGCTCTGGTGGAG 60.584 66.667 9.73 0.00 44.49 3.86
261 264 2.202987 GATGCGCTCTGGTGGAGG 60.203 66.667 9.73 0.00 42.08 4.30
262 265 3.005539 ATGCGCTCTGGTGGAGGT 61.006 61.111 9.73 0.00 42.08 3.85
266 269 2.267324 GCTCTGGTGGAGGTCTGC 59.733 66.667 0.00 0.00 42.08 4.26
274 277 4.400961 GGAGGTCTGCAGCCGCTT 62.401 66.667 22.72 8.46 39.64 4.68
276 279 4.749310 AGGTCTGCAGCCGCTTCG 62.749 66.667 9.47 0.00 39.64 3.79
304 307 4.308458 CCGCCGGTGTGAGTTGGA 62.308 66.667 15.14 0.00 0.00 3.53
312 315 1.545651 GGTGTGAGTTGGAAAGAGGGG 60.546 57.143 0.00 0.00 0.00 4.79
321 324 1.681486 GGAAAGAGGGGAGAGAGCGG 61.681 65.000 0.00 0.00 0.00 5.52
330 333 1.671901 GGAGAGAGCGGTGAGGAAGG 61.672 65.000 0.00 0.00 0.00 3.46
339 342 0.615850 GGTGAGGAAGGAAGGTGAGG 59.384 60.000 0.00 0.00 0.00 3.86
354 357 5.019785 AGGTGAGGGTAATTTATGACGAC 57.980 43.478 0.00 0.00 0.00 4.34
356 359 4.427312 GTGAGGGTAATTTATGACGACGT 58.573 43.478 0.00 0.00 0.00 4.34
416 419 4.317444 TAACCGCCCACACCCACG 62.317 66.667 0.00 0.00 0.00 4.94
436 439 1.602377 GTGTTTAGAGTTGCACCGCTT 59.398 47.619 0.00 0.00 0.00 4.68
485 488 4.341366 TGAGTGTTTCTCTTCATGCAGA 57.659 40.909 0.00 0.00 43.13 4.26
488 491 2.485814 GTGTTTCTCTTCATGCAGACCC 59.514 50.000 0.00 0.00 0.00 4.46
490 493 2.746362 GTTTCTCTTCATGCAGACCCAG 59.254 50.000 0.00 0.00 0.00 4.45
492 495 2.475155 TCTCTTCATGCAGACCCAGAT 58.525 47.619 0.00 0.00 0.00 2.90
506 509 6.514048 GCAGACCCAGATATGCTTTAATGTTC 60.514 42.308 0.00 0.00 35.78 3.18
510 513 5.296780 CCCAGATATGCTTTAATGTTCGTGT 59.703 40.000 0.00 0.00 0.00 4.49
519 522 7.585867 TGCTTTAATGTTCGTGTGCTTTAATA 58.414 30.769 0.00 0.00 0.00 0.98
530 533 6.919115 TCGTGTGCTTTAATATTCGTGCTATA 59.081 34.615 0.00 0.00 0.00 1.31
545 548 2.985896 GCTATACAAGCCCAACAGTGA 58.014 47.619 0.00 0.00 46.25 3.41
548 551 4.201950 GCTATACAAGCCCAACAGTGAATG 60.202 45.833 0.00 0.00 46.25 2.67
552 555 2.993471 GCCCAACAGTGAATGCGGG 61.993 63.158 3.82 3.82 44.50 6.13
583 586 2.078392 GGTTATTTTCTTCCCGTGCGA 58.922 47.619 0.00 0.00 0.00 5.10
598 601 0.035534 TGCGAGCCTGGCTAAAATCA 60.036 50.000 23.44 11.92 39.88 2.57
602 605 2.677902 CGAGCCTGGCTAAAATCAGTGA 60.678 50.000 23.44 0.00 39.88 3.41
606 609 3.334691 CCTGGCTAAAATCAGTGACGAA 58.665 45.455 0.00 0.00 0.00 3.85
608 611 4.034510 CCTGGCTAAAATCAGTGACGAATC 59.965 45.833 0.00 0.00 0.00 2.52
613 616 5.331905 GCTAAAATCAGTGACGAATCTAGCG 60.332 44.000 0.00 0.00 0.00 4.26
614 617 2.783828 ATCAGTGACGAATCTAGCGG 57.216 50.000 0.00 0.00 0.00 5.52
617 620 1.067582 GTGACGAATCTAGCGGGGG 59.932 63.158 0.00 0.00 0.00 5.40
635 638 2.125350 GGCTCCGACAGGCTCAAG 60.125 66.667 1.23 0.00 44.64 3.02
717 720 9.454859 CCTTATTTGGACTAAAGAATTGAGAGT 57.545 33.333 0.00 0.00 29.90 3.24
753 756 2.420022 ACACACAGTTCACTTTGAGCAC 59.580 45.455 0.06 0.00 29.40 4.40
761 764 1.425066 TCACTTTGAGCACCCCTTCAT 59.575 47.619 0.00 0.00 0.00 2.57
765 768 3.711190 ACTTTGAGCACCCCTTCATTTTT 59.289 39.130 0.00 0.00 0.00 1.94
766 769 4.202253 ACTTTGAGCACCCCTTCATTTTTC 60.202 41.667 0.00 0.00 0.00 2.29
788 791 3.508840 CCAAGATTCGCCACGGGC 61.509 66.667 4.96 4.96 46.75 6.13
803 806 1.300697 GGGCTGAAGTATACGCGGG 60.301 63.158 12.47 0.00 0.00 6.13
957 3699 5.762711 TCGATTGAAATTCTCCAACTGACAA 59.237 36.000 0.00 0.00 0.00 3.18
965 3707 6.899393 ATTCTCCAACTGACAAAAAGCATA 57.101 33.333 0.00 0.00 0.00 3.14
1144 3886 1.839424 TCTGACGGAGCTGATGAAGA 58.161 50.000 0.00 0.00 0.00 2.87
1240 3985 3.008157 TCCAAATCCATTTTGCATGCTGT 59.992 39.130 20.33 0.00 42.85 4.40
1284 4032 3.242608 CGAGCTAGCTAGTTCACTCACTC 60.243 52.174 29.76 19.42 33.75 3.51
1285 4033 3.691575 AGCTAGCTAGTTCACTCACTCA 58.308 45.455 17.69 0.00 0.00 3.41
1287 4035 3.442273 GCTAGCTAGTTCACTCACTCACT 59.558 47.826 21.62 0.00 0.00 3.41
1292 4040 3.567576 AGTTCACTCACTCACTCATCG 57.432 47.619 0.00 0.00 0.00 3.84
1341 4091 1.144708 TGATTTGTCAGGTGGGAGCAA 59.855 47.619 0.00 0.00 0.00 3.91
1481 4231 1.225855 CAACAAGTTCACGGCAGCTA 58.774 50.000 0.00 0.00 0.00 3.32
1490 4240 1.918800 ACGGCAGCTAACTCCCCTT 60.919 57.895 0.00 0.00 0.00 3.95
1577 4344 2.048503 GCTGTCGCGGTACAAGGT 60.049 61.111 6.13 0.00 0.00 3.50
1640 4407 1.741401 CCATCCGCTCGCAGTTCAA 60.741 57.895 0.00 0.00 0.00 2.69
1779 4561 0.107993 CTCTGCAGCCTTGGATTCGA 60.108 55.000 9.47 0.00 0.00 3.71
1994 4916 5.163519 CCAGATCCTTTTCACTCTCTCTCTC 60.164 48.000 0.00 0.00 0.00 3.20
1995 4917 5.653769 CAGATCCTTTTCACTCTCTCTCTCT 59.346 44.000 0.00 0.00 0.00 3.10
1996 4918 5.888161 AGATCCTTTTCACTCTCTCTCTCTC 59.112 44.000 0.00 0.00 0.00 3.20
1997 4919 5.255397 TCCTTTTCACTCTCTCTCTCTCT 57.745 43.478 0.00 0.00 0.00 3.10
1998 4920 5.253330 TCCTTTTCACTCTCTCTCTCTCTC 58.747 45.833 0.00 0.00 0.00 3.20
1999 4921 5.014123 TCCTTTTCACTCTCTCTCTCTCTCT 59.986 44.000 0.00 0.00 0.00 3.10
2000 4922 5.355350 CCTTTTCACTCTCTCTCTCTCTCTC 59.645 48.000 0.00 0.00 0.00 3.20
2001 4923 5.762179 TTTCACTCTCTCTCTCTCTCTCT 57.238 43.478 0.00 0.00 0.00 3.10
2002 4924 5.344743 TTCACTCTCTCTCTCTCTCTCTC 57.655 47.826 0.00 0.00 0.00 3.20
2003 4925 4.614475 TCACTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
2067 4992 1.492133 TAGACTTTGCAGGCTGGGCT 61.492 55.000 17.64 9.39 39.58 5.19
2478 5445 4.149747 CACACGCTTGTTTGTTTCTGTTTT 59.850 37.500 0.00 0.00 31.66 2.43
2488 5455 2.354510 TGTTTCTGTTTTGACAGCCTCG 59.645 45.455 1.78 0.00 37.63 4.63
2531 5499 6.896021 ATCTCATTTGAAGATAATGGGCTG 57.104 37.500 0.00 0.00 34.23 4.85
2617 5591 5.280113 CCATCAAAAGATGAACACCCCAAAT 60.280 40.000 7.02 0.00 42.54 2.32
2683 5657 2.644798 GAGGCCATCCAACCCTATACAT 59.355 50.000 5.01 0.00 33.74 2.29
2700 5674 0.457035 CATCAAATGTCCGCCCTTGG 59.543 55.000 0.00 0.00 0.00 3.61
2703 5677 0.609131 CAAATGTCCGCCCTTGGTCT 60.609 55.000 0.00 0.00 0.00 3.85
2771 5749 4.301628 GCAGCCTTTGTCCATAATTATGC 58.698 43.478 18.40 7.82 32.40 3.14
2905 5883 1.569548 ACTCCTCCCCTCGAATAGTCA 59.430 52.381 0.00 0.00 0.00 3.41
2987 5965 7.042950 TGTTGATGCATTTGGATAAATTCCTG 58.957 34.615 0.00 0.00 45.68 3.86
2992 5970 6.098679 TGCATTTGGATAAATTCCTGAAACG 58.901 36.000 0.00 0.00 45.68 3.60
2995 5973 6.885952 TTTGGATAAATTCCTGAAACGTCA 57.114 33.333 0.00 0.00 45.68 4.35
2999 5977 5.182380 GGATAAATTCCTGAAACGTCACCAA 59.818 40.000 0.00 0.00 41.78 3.67
3003 5981 6.642707 AATTCCTGAAACGTCACCAAATTA 57.357 33.333 0.00 0.00 0.00 1.40
3233 6221 3.859414 GAGCCTGGCTGGAGCGAT 61.859 66.667 28.82 0.00 39.88 4.58
3243 6231 2.833582 GGAGCGATGGAGGTCCGA 60.834 66.667 0.00 0.00 46.93 4.55
3328 6317 4.798682 AAGGGCGGAGGGACGGAT 62.799 66.667 0.00 0.00 0.00 4.18
3367 6359 1.828595 GAGTTGGGTTTTTGTGTGGGT 59.171 47.619 0.00 0.00 0.00 4.51
3380 6376 2.200370 TGGGTGGTGTCCGAGTCT 59.800 61.111 0.00 0.00 0.00 3.24
3534 6560 2.550208 GGTCTGGATATTTAGGGGCGTG 60.550 54.545 0.00 0.00 0.00 5.34
3544 6570 0.907704 TAGGGGCGTGTTGATGGACT 60.908 55.000 0.00 0.00 0.00 3.85
3815 6890 7.630513 GCATATTAGAAAGCCAAGGTTTTAGCA 60.631 37.037 0.71 0.00 33.25 3.49
4063 7139 1.636148 AGTGTGGCCTTGATTTGCAT 58.364 45.000 3.32 0.00 0.00 3.96
4065 7141 2.028748 AGTGTGGCCTTGATTTGCATTC 60.029 45.455 3.32 0.00 0.00 2.67
4070 7146 2.624636 GCCTTGATTTGCATTCTTGGG 58.375 47.619 0.00 0.00 0.00 4.12
4117 7193 9.636789 TGAATTACTCATCTTTCCATCATGAAT 57.363 29.630 0.00 0.00 0.00 2.57
4126 7202 8.504815 CATCTTTCCATCATGAATATGTGAGTC 58.495 37.037 0.00 0.00 35.73 3.36
4154 7230 6.988522 AGTAGTGAAAACACACAAGGTTTTT 58.011 32.000 4.94 0.00 45.56 1.94
4389 7478 5.690865 TGACAGGTGTCTAAATGAACCTTT 58.309 37.500 11.31 0.00 44.99 3.11
4949 8724 8.950210 AGATATAAAGGAACACACAATGACTTG 58.050 33.333 0.00 0.00 38.39 3.16
5064 9163 4.275810 TGGTCTAGGTAGGTCACATGTAC 58.724 47.826 0.00 0.00 0.00 2.90
5065 9164 4.017775 TGGTCTAGGTAGGTCACATGTACT 60.018 45.833 0.00 0.00 0.00 2.73
5066 9165 4.579753 GGTCTAGGTAGGTCACATGTACTC 59.420 50.000 0.00 0.00 0.00 2.59
5067 9166 4.579753 GTCTAGGTAGGTCACATGTACTCC 59.420 50.000 0.00 1.32 0.00 3.85
5068 9167 2.748388 AGGTAGGTCACATGTACTCCC 58.252 52.381 0.00 0.00 0.00 4.30
5069 9168 2.315155 AGGTAGGTCACATGTACTCCCT 59.685 50.000 0.00 4.07 0.00 4.20
5070 9169 2.694109 GGTAGGTCACATGTACTCCCTC 59.306 54.545 0.00 0.00 0.00 4.30
5071 9170 1.867363 AGGTCACATGTACTCCCTCC 58.133 55.000 0.00 0.00 0.00 4.30
5072 9171 0.460311 GGTCACATGTACTCCCTCCG 59.540 60.000 0.00 0.00 0.00 4.63
5073 9172 1.183549 GTCACATGTACTCCCTCCGT 58.816 55.000 0.00 0.00 0.00 4.69
5074 9173 1.549170 GTCACATGTACTCCCTCCGTT 59.451 52.381 0.00 0.00 0.00 4.44
5075 9174 1.822990 TCACATGTACTCCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
5076 9175 1.134788 CACATGTACTCCCTCCGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
5077 9176 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
5078 9177 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
5079 9178 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
5080 9179 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
5081 9180 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
5082 9181 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
5083 9182 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5084 9183 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5085 9184 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5086 9185 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5087 9186 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5088 9187 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5089 9188 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5090 9189 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5091 9190 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5092 9191 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5093 9192 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5094 9193 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5095 9194 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5096 9195 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5097 9196 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
5123 9222 9.716531 ATACTAAGTTTAGTACAAAGTTGGGTC 57.283 33.333 12.58 0.00 45.86 4.46
5124 9223 7.567458 ACTAAGTTTAGTACAAAGTTGGGTCA 58.433 34.615 17.46 3.97 41.92 4.02
5125 9224 8.215736 ACTAAGTTTAGTACAAAGTTGGGTCAT 58.784 33.333 17.46 3.75 41.92 3.06
5126 9225 7.506328 AAGTTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
5127 9226 6.838382 AGTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 0.00 0.00 0.00 2.90
5128 9227 7.970102 AGTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 0.00 0.00 0.00 1.98
5129 9228 8.603304 AGTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 0.00 0.00 0.00 1.98
5130 9229 9.227777 GTTTAGTACAAAGTTGGGTCATCTATT 57.772 33.333 0.00 0.00 0.00 1.73
5131 9230 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
5132 9231 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
5133 9232 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
5134 9233 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5135 9234 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5136 9235 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5137 9236 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5138 9237 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5139 9238 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5140 9239 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5141 9240 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5142 9241 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5143 9242 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5144 9243 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5145 9244 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5146 9245 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5147 9246 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5513 10339 2.073816 GCACCGCATAGTACACAGTTT 58.926 47.619 0.00 0.00 0.00 2.66
5552 10378 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
5676 10512 0.790207 GGTGAGTATGCGTGTGTGTG 59.210 55.000 0.00 0.00 0.00 3.82
5677 10513 1.497991 GTGAGTATGCGTGTGTGTGT 58.502 50.000 0.00 0.00 0.00 3.72
5678 10514 1.192312 GTGAGTATGCGTGTGTGTGTG 59.808 52.381 0.00 0.00 0.00 3.82
5679 10515 1.202475 TGAGTATGCGTGTGTGTGTGT 60.202 47.619 0.00 0.00 0.00 3.72
5782 11062 7.283127 TCAATGAAGATGCCCTATTGTTAGAAC 59.717 37.037 0.00 0.00 32.22 3.01
5969 11549 6.370994 GTGTTGGAATCTCAGATAGCCATATG 59.629 42.308 9.40 0.00 0.00 1.78
6034 11615 1.001887 TCCCCGGCGCTAAAAATGT 60.002 52.632 7.64 0.00 0.00 2.71
6192 11862 4.087510 TCGCATGAAAATTCTGAAGCAG 57.912 40.909 0.00 0.00 0.00 4.24
6319 11990 2.224185 GCCAAAACGGAAACCCAATTCT 60.224 45.455 0.00 0.00 36.56 2.40
6446 12122 1.670811 CCCGATGTGGTTTGTATGAGC 59.329 52.381 0.00 0.00 35.15 4.26
6493 12172 0.969894 AGCTGTAGTTCCGAGTGCTT 59.030 50.000 0.00 0.00 0.00 3.91
6601 12283 6.930722 ACACAAAATGCCTCTTATCTTTTTGG 59.069 34.615 13.81 8.16 39.53 3.28
6659 12341 3.440173 ACAGGCACTACAAATTCCAATCG 59.560 43.478 0.00 0.00 36.02 3.34
6679 12479 5.538849 TCGTAACCATAGTTGCATCCATA 57.461 39.130 0.00 0.00 38.39 2.74
6764 12567 5.552870 TCCTGAACTTAAGCTTCAGAAGT 57.447 39.130 29.59 10.64 45.15 3.01
6784 12587 8.851416 CAGAAGTTACGACTTGTACTAATGAAG 58.149 37.037 0.00 0.00 45.88 3.02
6798 12602 8.478066 TGTACTAATGAAGCTCACTCACAATAT 58.522 33.333 0.00 0.00 0.00 1.28
6807 12611 6.917217 GCTCACTCACAATATAAAAGAGCT 57.083 37.500 0.00 0.00 41.84 4.09
6814 12618 8.624776 ACTCACAATATAAAAGAGCTATTTGCC 58.375 33.333 7.17 0.00 44.23 4.52
6831 12636 7.227512 GCTATTTGCCTACATAGACTTGATTGT 59.772 37.037 0.00 0.00 35.15 2.71
6839 12644 9.121658 CCTACATAGACTTGATTGTAGTACAGA 57.878 37.037 2.68 0.00 39.79 3.41
6853 12658 7.592885 TGTAGTACAGAAAGTGTTTCCTACT 57.407 36.000 0.00 10.85 40.94 2.57
6895 12701 1.873591 GCTCCACAAAACGTCAGTCAT 59.126 47.619 0.00 0.00 0.00 3.06
6938 12745 1.532868 CTCTGTTTCCCGAAGCACAAG 59.467 52.381 0.00 0.00 0.00 3.16
6973 12780 1.279496 TGGCTCTAGCTGTGAACCAT 58.721 50.000 8.89 0.00 41.70 3.55
7012 12820 5.437060 GGTTGATAGATAAAAGTGGCCTGA 58.563 41.667 3.32 0.00 0.00 3.86
7036 12844 8.742777 TGATTTTCATCCCATTTTCTTAGACTG 58.257 33.333 0.00 0.00 0.00 3.51
7156 12991 5.678583 AGATACACTGCATAGCACATTCTT 58.321 37.500 0.00 0.00 33.79 2.52
7181 13016 3.500299 GGAGAAACTTCCAGTTCTGAAGC 59.500 47.826 1.00 0.00 42.35 3.86
7294 13130 2.507484 TGGGTTCTGAATGTGCTTCTG 58.493 47.619 0.00 0.00 34.75 3.02
7295 13131 2.158623 TGGGTTCTGAATGTGCTTCTGT 60.159 45.455 0.00 0.00 35.11 3.41
7296 13132 2.227388 GGGTTCTGAATGTGCTTCTGTG 59.773 50.000 0.00 0.00 35.11 3.66
7297 13133 2.351157 GGTTCTGAATGTGCTTCTGTGC 60.351 50.000 0.00 0.00 35.11 4.57
7319 13155 3.546020 CGTGTAGTTTCTGTGCAACCAAG 60.546 47.826 0.00 0.00 34.36 3.61
7372 13209 4.855715 TGTCCTGTTCTAGTTCTGTCTG 57.144 45.455 0.00 0.00 0.00 3.51
7402 13276 3.643199 TTACTGCCATGCAACCTGATA 57.357 42.857 0.00 0.00 38.41 2.15
7407 13281 2.092267 TGCCATGCAACCTGATACTGAT 60.092 45.455 0.00 0.00 34.76 2.90
7715 13589 3.441011 CTACCGCTGGCCTTACCCG 62.441 68.421 3.32 0.00 37.83 5.28
7747 13621 4.441998 GCCTCGCGCTTTTTCTTC 57.558 55.556 5.56 0.00 0.00 2.87
7757 13631 2.328473 GCTTTTTCTTCCGGCAATGAC 58.672 47.619 0.00 0.00 0.00 3.06
7816 13693 7.495901 ACGATCATCATTCATGGATAGATACC 58.504 38.462 0.00 0.00 32.64 2.73
7825 13702 6.025749 TCATGGATAGATACCGTGATGTTC 57.974 41.667 0.00 0.00 45.02 3.18
7835 13712 1.645034 CGTGATGTTCGCAGGAAGAT 58.355 50.000 0.00 0.00 38.72 2.40
7955 13832 3.704843 CGATTCGCGCTCATGGAA 58.295 55.556 5.56 0.69 0.00 3.53
8109 14005 3.992943 AGGGGTACATCAAACGATGAA 57.007 42.857 9.33 0.00 42.54 2.57
8134 14030 4.587684 AGCCCCATGATCATTTTCTCAATC 59.412 41.667 5.16 0.00 0.00 2.67
8144 14040 8.177013 TGATCATTTTCTCAATCATTGTGTACG 58.823 33.333 0.00 0.00 0.00 3.67
8145 14041 7.433708 TCATTTTCTCAATCATTGTGTACGT 57.566 32.000 0.00 0.00 0.00 3.57
8146 14042 8.541133 TCATTTTCTCAATCATTGTGTACGTA 57.459 30.769 0.00 0.00 0.00 3.57
8165 14061 0.532862 ATGTAGTACATGGGCGCTGC 60.533 55.000 15.07 0.00 37.45 5.25
8229 14156 3.648067 TGATCAGATTGTCTGTATCCCCC 59.352 47.826 6.83 0.00 44.58 5.40
8295 14233 9.461312 AAGGCAATGTGAATAAGTATCAGTTTA 57.539 29.630 0.00 0.00 0.00 2.01
8379 14317 8.296799 CAAATTTTGCTACAGCTATTGACAAA 57.703 30.769 2.44 0.00 42.66 2.83
8442 14381 4.015872 ACCAGCTGATTTTTAAGACCGA 57.984 40.909 17.39 0.00 0.00 4.69
8447 14386 6.538742 CCAGCTGATTTTTAAGACCGAAGATA 59.461 38.462 17.39 0.00 0.00 1.98
8465 14404 8.073355 CGAAGATATCGTTATTTGCTTTACCT 57.927 34.615 0.00 0.00 46.52 3.08
8466 14405 8.215132 CGAAGATATCGTTATTTGCTTTACCTC 58.785 37.037 0.00 0.00 46.52 3.85
8467 14406 7.964604 AGATATCGTTATTTGCTTTACCTCC 57.035 36.000 0.00 0.00 0.00 4.30
8468 14407 7.506114 AGATATCGTTATTTGCTTTACCTCCA 58.494 34.615 0.00 0.00 0.00 3.86
8469 14408 8.157476 AGATATCGTTATTTGCTTTACCTCCAT 58.843 33.333 0.00 0.00 0.00 3.41
8470 14409 8.691661 ATATCGTTATTTGCTTTACCTCCATT 57.308 30.769 0.00 0.00 0.00 3.16
8471 14410 9.787435 ATATCGTTATTTGCTTTACCTCCATTA 57.213 29.630 0.00 0.00 0.00 1.90
8472 14411 8.691661 ATCGTTATTTGCTTTACCTCCATTAT 57.308 30.769 0.00 0.00 0.00 1.28
8473 14412 8.514330 TCGTTATTTGCTTTACCTCCATTATT 57.486 30.769 0.00 0.00 0.00 1.40
8474 14413 8.402472 TCGTTATTTGCTTTACCTCCATTATTG 58.598 33.333 0.00 0.00 0.00 1.90
8475 14414 8.188139 CGTTATTTGCTTTACCTCCATTATTGT 58.812 33.333 0.00 0.00 0.00 2.71
8476 14415 9.869757 GTTATTTGCTTTACCTCCATTATTGTT 57.130 29.630 0.00 0.00 0.00 2.83
8479 14418 9.791801 ATTTGCTTTACCTCCATTATTGTTTTT 57.208 25.926 0.00 0.00 0.00 1.94
8688 14633 6.128007 ACAAGTTAAGCTGTAATGGGATTTCG 60.128 38.462 0.00 0.00 0.00 3.46
8723 14668 7.645058 ATGAACCAAACCTACTAATTCATGG 57.355 36.000 0.00 0.00 34.79 3.66
8746 14691 0.318784 ACCTCGTTCGTGTCTCTTGC 60.319 55.000 0.00 0.00 0.00 4.01
8769 14714 2.723273 CACTGGTTGAATTCTACCCCC 58.277 52.381 28.74 11.23 40.33 5.40
8770 14715 2.041081 CACTGGTTGAATTCTACCCCCA 59.959 50.000 28.74 14.61 40.33 4.96
8803 14748 7.205297 CCTTAATTGGCATGTCCATAAGAAAG 58.795 38.462 20.00 14.15 46.04 2.62
8815 14760 6.315393 TGTCCATAAGAAAGTAGAAATTCCGC 59.685 38.462 0.00 0.00 0.00 5.54
8870 14816 7.967908 TGAAATAAAAGGAAATTAAGGTGCCA 58.032 30.769 0.00 0.00 0.00 4.92
8881 14828 1.089123 AAGGTGCCATTTTCCCCCTA 58.911 50.000 0.00 0.00 0.00 3.53
8911 14858 3.342377 TTGTCTTGCGGATCCACATTA 57.658 42.857 13.41 0.00 0.00 1.90
8917 14864 2.627945 TGCGGATCCACATTACAAGAC 58.372 47.619 13.41 0.00 0.00 3.01
8923 14870 5.353956 CGGATCCACATTACAAGACATCAAA 59.646 40.000 13.41 0.00 0.00 2.69
8931 14878 9.676195 CACATTACAAGACATCAAATTACAACA 57.324 29.630 0.00 0.00 0.00 3.33
8965 14912 8.962679 GGGTAATACCAATTTACAACTGAATGA 58.037 33.333 12.03 0.00 41.02 2.57
8982 14929 0.973632 TGACAAGCCCGACACACTAT 59.026 50.000 0.00 0.00 0.00 2.12
8984 14931 0.036388 ACAAGCCCGACACACTATGG 60.036 55.000 0.00 0.00 0.00 2.74
9006 14953 6.650120 TGGAAAGTCTTCTTTTCTACACTGT 58.350 36.000 0.00 0.00 42.99 3.55
9009 14956 7.280205 GGAAAGTCTTCTTTTCTACACTGTCAA 59.720 37.037 0.00 0.00 42.99 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.038526 AAGACTCTACCGCAACCACG 60.039 55.000 0.00 0.00 0.00 4.94
2 3 1.629043 AGAAGACTCTACCGCAACCA 58.371 50.000 0.00 0.00 0.00 3.67
9 10 5.167845 CAAGAAGAGCAAGAAGACTCTACC 58.832 45.833 0.00 0.00 42.41 3.18
31 32 0.463654 ACTGTTCAGCCGCAAAGACA 60.464 50.000 0.00 0.00 0.00 3.41
78 81 1.936547 GATTCTGCACGGATGACTTCC 59.063 52.381 0.00 0.00 41.59 3.46
85 88 0.668535 TCGATCGATTCTGCACGGAT 59.331 50.000 15.15 0.00 0.00 4.18
89 92 0.510359 GCCATCGATCGATTCTGCAC 59.490 55.000 27.45 9.76 31.62 4.57
92 95 1.791204 CACTGCCATCGATCGATTCTG 59.209 52.381 27.45 23.85 31.62 3.02
102 105 4.433186 TTGGATTAAAACACTGCCATCG 57.567 40.909 0.00 0.00 0.00 3.84
136 139 1.566231 AGGGAGGGGATTGAACACATC 59.434 52.381 0.00 0.00 0.00 3.06
178 181 3.051327 TCGACTCGAGCTAGATTAGACG 58.949 50.000 13.61 8.90 0.00 4.18
204 207 4.399934 CCTCGCCCTCTCTATAGATTTACC 59.600 50.000 2.11 0.00 0.00 2.85
214 217 1.133853 GGTAAGTCCTCGCCCTCTCTA 60.134 57.143 0.00 0.00 0.00 2.43
218 221 2.806237 CGGTAAGTCCTCGCCCTC 59.194 66.667 0.00 0.00 0.00 4.30
301 304 0.972983 CGCTCTCTCCCCTCTTTCCA 60.973 60.000 0.00 0.00 0.00 3.53
302 305 1.681486 CCGCTCTCTCCCCTCTTTCC 61.681 65.000 0.00 0.00 0.00 3.13
304 307 1.079438 ACCGCTCTCTCCCCTCTTT 59.921 57.895 0.00 0.00 0.00 2.52
312 315 0.681564 TCCTTCCTCACCGCTCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
321 324 0.615850 CCCTCACCTTCCTTCCTCAC 59.384 60.000 0.00 0.00 0.00 3.51
330 333 5.522824 GTCGTCATAAATTACCCTCACCTTC 59.477 44.000 0.00 0.00 0.00 3.46
339 342 4.412694 CGACACGTCGTCATAAATTACC 57.587 45.455 11.35 0.00 45.70 2.85
354 357 2.247267 GCGTTGTTTCCCGACACG 59.753 61.111 0.00 0.00 0.00 4.49
356 359 2.106534 TCGCGTTGTTTCCCGACA 59.893 55.556 5.77 0.00 0.00 4.35
363 366 1.202486 TCCTGAGAAGTCGCGTTGTTT 60.202 47.619 5.77 0.00 0.00 2.83
399 402 4.317444 CGTGGGTGTGGGCGGTTA 62.317 66.667 0.00 0.00 0.00 2.85
416 419 1.226746 AGCGGTGCAACTCTAAACAC 58.773 50.000 0.00 0.00 36.74 3.32
485 488 5.296780 CACGAACATTAAAGCATATCTGGGT 59.703 40.000 0.00 0.00 0.00 4.51
488 491 5.678483 GCACACGAACATTAAAGCATATCTG 59.322 40.000 0.00 0.00 0.00 2.90
490 493 5.810525 AGCACACGAACATTAAAGCATATC 58.189 37.500 0.00 0.00 0.00 1.63
492 495 5.621197 AAGCACACGAACATTAAAGCATA 57.379 34.783 0.00 0.00 0.00 3.14
506 509 4.258935 AGCACGAATATTAAAGCACACG 57.741 40.909 0.00 0.00 0.00 4.49
530 533 0.675633 GCATTCACTGTTGGGCTTGT 59.324 50.000 0.00 0.00 0.00 3.16
545 548 1.078708 CCGTCTGGTTACCCGCATT 60.079 57.895 0.00 0.00 0.00 3.56
566 569 1.365699 GCTCGCACGGGAAGAAAATA 58.634 50.000 0.00 0.00 0.00 1.40
579 582 0.035534 TGATTTTAGCCAGGCTCGCA 60.036 50.000 20.38 7.38 40.44 5.10
580 583 0.659957 CTGATTTTAGCCAGGCTCGC 59.340 55.000 20.38 4.58 40.44 5.03
583 586 2.716217 GTCACTGATTTTAGCCAGGCT 58.284 47.619 20.63 20.63 43.41 4.58
598 601 1.392710 CCCCCGCTAGATTCGTCACT 61.393 60.000 0.00 0.00 0.00 3.41
617 620 3.672295 CTTGAGCCTGTCGGAGCCC 62.672 68.421 0.00 0.00 0.00 5.19
633 636 1.361204 CAATTTTTGGAGGGGGCCTT 58.639 50.000 0.84 0.00 31.76 4.35
689 692 9.807921 TCTCAATTCTTTAGTCCAAATAAGGTT 57.192 29.630 0.00 0.00 0.00 3.50
725 728 7.624360 TCAAAGTGAACTGTGTGTAGAAAAT 57.376 32.000 0.65 0.00 32.98 1.82
753 756 6.173427 TCTTGGAAAAGAAAAATGAAGGGG 57.827 37.500 0.00 0.00 0.00 4.79
761 764 5.047188 GTGGCGAATCTTGGAAAAGAAAAA 58.953 37.500 0.00 0.00 31.77 1.94
765 768 1.804151 CGTGGCGAATCTTGGAAAAGA 59.196 47.619 0.00 0.00 0.00 2.52
766 769 1.135689 CCGTGGCGAATCTTGGAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
788 791 1.335689 GGTAGCCCGCGTATACTTCAG 60.336 57.143 4.92 0.00 0.00 3.02
790 793 0.670162 TGGTAGCCCGCGTATACTTC 59.330 55.000 4.92 0.00 0.00 3.01
803 806 2.522638 CGGCCGATCGTTTGGTAGC 61.523 63.158 24.07 8.02 0.00 3.58
878 3213 3.117994 CGTGTGCGATACAATCATACTCG 59.882 47.826 0.00 0.00 41.89 4.18
914 3249 3.101209 TACGGCGCCACGTAGTAG 58.899 61.111 28.98 9.93 46.58 2.57
957 3699 4.399303 GGTGGATGCTGTACTTATGCTTTT 59.601 41.667 0.00 0.00 0.00 2.27
965 3707 0.620556 CCAGGGTGGATGCTGTACTT 59.379 55.000 0.00 0.00 40.96 2.24
1240 3985 7.295322 TCGAGCTACTTATGGACTACTACTA 57.705 40.000 0.00 0.00 0.00 1.82
1284 4032 5.967674 GCAATTAATTCTTGGACGATGAGTG 59.032 40.000 0.00 0.00 0.00 3.51
1285 4033 5.066505 GGCAATTAATTCTTGGACGATGAGT 59.933 40.000 0.00 0.00 0.00 3.41
1287 4035 4.946772 TGGCAATTAATTCTTGGACGATGA 59.053 37.500 0.00 0.00 0.00 2.92
1292 4040 4.434713 ACGTGGCAATTAATTCTTGGAC 57.565 40.909 0.00 0.00 0.00 4.02
1481 4231 2.029307 GCGCGAGGATAAGGGGAGTT 62.029 60.000 12.10 0.00 0.00 3.01
1490 4240 2.967473 GAGCTAGCGCGCGAGGATA 61.967 63.158 36.22 18.60 42.32 2.59
1756 4537 0.913451 ATCCAAGGCTGCAGAGGACT 60.913 55.000 20.43 6.36 0.00 3.85
1779 4561 5.266733 AGCATCAAACACTTTCACACAAT 57.733 34.783 0.00 0.00 0.00 2.71
1995 4917 9.730546 AGTACCTCACTAGCCTCTAGAGAGAGA 62.731 48.148 21.76 12.89 43.24 3.10
1996 4918 7.651043 AGTACCTCACTAGCCTCTAGAGAGAG 61.651 50.000 21.76 15.77 41.63 3.20
1997 4919 3.389866 ACCTCACTAGCCTCTAGAGAGA 58.610 50.000 21.76 4.80 44.74 3.10
1998 4920 3.857157 ACCTCACTAGCCTCTAGAGAG 57.143 52.381 21.76 12.85 41.71 3.20
1999 4921 4.300345 AGTACCTCACTAGCCTCTAGAGA 58.700 47.826 21.76 0.01 34.98 3.10
2000 4922 4.699925 AGTACCTCACTAGCCTCTAGAG 57.300 50.000 13.18 13.18 34.98 2.43
2067 4992 3.510459 TCTCTCTCAAGTTCCATCACCA 58.490 45.455 0.00 0.00 0.00 4.17
2231 5185 5.301835 ACCAAGCTATCATATCAAGCACT 57.698 39.130 0.00 0.00 38.75 4.40
2442 5409 1.201181 AGCGTGTGTCTAGCTCTCAAG 59.799 52.381 0.00 0.00 36.33 3.02
2478 5445 1.507140 AATAATCCCCGAGGCTGTCA 58.493 50.000 0.00 0.00 0.00 3.58
2634 5608 2.915659 TTGTCCACGGAGGCGTCT 60.916 61.111 6.34 0.00 37.29 4.18
2654 5628 0.575848 TTGGATGGCCTCCCCCTATA 59.424 55.000 15.98 0.00 44.23 1.31
2683 5657 0.608035 GACCAAGGGCGGACATTTGA 60.608 55.000 0.00 0.00 0.00 2.69
2748 5726 4.797275 GCATAATTATGGACAAAGGCTGCC 60.797 45.833 23.57 11.65 34.32 4.85
2752 5730 5.284079 CACAGCATAATTATGGACAAAGGC 58.716 41.667 23.57 9.26 34.32 4.35
2771 5749 5.404096 TGTTGCATCAGAATATTTGCACAG 58.596 37.500 11.20 0.00 44.16 3.66
2888 5866 2.108168 TGTTGACTATTCGAGGGGAGG 58.892 52.381 0.00 0.00 0.00 4.30
2905 5883 9.453572 TCAGAATTATCTAGTTGAGCATTTGTT 57.546 29.630 0.00 0.00 33.50 2.83
2987 5965 6.139672 CAAAGCATAATTTGGTGACGTTTC 57.860 37.500 0.00 0.00 36.68 2.78
2999 5977 8.506168 TTCTATCGAACTTCCAAAGCATAATT 57.494 30.769 0.00 0.00 0.00 1.40
3003 5981 7.770897 AGTATTTCTATCGAACTTCCAAAGCAT 59.229 33.333 0.00 0.00 0.00 3.79
3138 6125 2.361610 CCGCCCCTGCACATTTCT 60.362 61.111 0.00 0.00 37.32 2.52
3140 6127 2.361610 CTCCGCCCCTGCACATTT 60.362 61.111 0.00 0.00 37.32 2.32
3197 6184 2.606519 AGCCCCGACTTGCCTACA 60.607 61.111 0.00 0.00 0.00 2.74
3221 6209 3.473647 CCTCCATCGCTCCAGCCA 61.474 66.667 0.00 0.00 37.91 4.75
3233 6221 1.155390 AGACCTTGTCGGACCTCCA 59.845 57.895 5.55 0.00 37.67 3.86
3328 6317 1.303317 GGAGCCCCGCTTTTCTCAA 60.303 57.895 0.00 0.00 39.88 3.02
3367 6359 1.527611 ACGTCAGACTCGGACACCA 60.528 57.895 9.60 0.00 34.97 4.17
3465 6462 1.862123 CGTCGTGCAGCAAATGTCT 59.138 52.632 0.00 0.00 0.00 3.41
3534 6560 3.685139 TCTCCAACTCAGTCCATCAAC 57.315 47.619 0.00 0.00 0.00 3.18
3544 6570 2.551270 ACTTAGGGCATCTCCAACTCA 58.449 47.619 0.00 0.00 36.21 3.41
3634 6663 7.033185 CCATAGCCTTGTTAATTGTTAACCAC 58.967 38.462 2.48 0.00 43.73 4.16
3795 6870 6.041523 ACAAATGCTAAAACCTTGGCTTTCTA 59.958 34.615 0.00 0.00 39.64 2.10
3801 6876 3.066380 CCACAAATGCTAAAACCTTGGC 58.934 45.455 0.00 0.00 39.38 4.52
3815 6890 5.159273 AGTTTTTCAACACCACCACAAAT 57.841 34.783 0.00 0.00 35.05 2.32
4063 7139 4.367166 ACCCCTTTTCTTTTTCCCAAGAA 58.633 39.130 0.00 0.00 40.36 2.52
4065 7141 4.771114 AACCCCTTTTCTTTTTCCCAAG 57.229 40.909 0.00 0.00 0.00 3.61
4070 7146 8.902540 ATTCATACAAACCCCTTTTCTTTTTC 57.097 30.769 0.00 0.00 0.00 2.29
4117 7193 6.266786 TGTTTTCACTACTCCAGACTCACATA 59.733 38.462 0.00 0.00 0.00 2.29
4154 7230 8.463930 AACTTTATTGAACATCTGAAGTTCCA 57.536 30.769 19.48 11.53 43.57 3.53
4199 7276 5.704354 TGTTTAATATGTCCCAGCCATCAT 58.296 37.500 0.00 0.00 0.00 2.45
4641 7730 7.998964 ACACCTCATATCTAAAACTATTTGGGG 59.001 37.037 0.00 0.00 32.64 4.96
4716 7805 1.642952 GCAGTGGCAGAGCTTAGTGC 61.643 60.000 7.87 7.87 40.72 4.40
4923 8698 8.950210 CAAGTCATTGTGTGTTCCTTTATATCT 58.050 33.333 0.00 0.00 0.00 1.98
4949 8724 7.044798 ACTCAGTCTTATCATAAGCTTCAACC 58.955 38.462 0.00 0.00 0.00 3.77
5027 8987 9.280174 CTACCTAGACCAAACAAACAAAGATAA 57.720 33.333 0.00 0.00 0.00 1.75
5064 9163 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5065 9164 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5066 9165 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5067 9166 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5068 9167 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5069 9168 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5070 9169 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5071 9170 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5097 9196 9.716531 GACCCAACTTTGTACTAAACTTAGTAT 57.283 33.333 11.50 0.00 45.11 2.12
5098 9197 8.703743 TGACCCAACTTTGTACTAAACTTAGTA 58.296 33.333 5.42 5.42 43.36 1.82
5099 9198 7.567458 TGACCCAACTTTGTACTAAACTTAGT 58.433 34.615 7.27 7.27 45.39 2.24
5100 9199 8.617290 ATGACCCAACTTTGTACTAAACTTAG 57.383 34.615 0.00 0.00 36.82 2.18
5101 9200 8.434392 AGATGACCCAACTTTGTACTAAACTTA 58.566 33.333 0.00 0.00 0.00 2.24
5102 9201 7.287810 AGATGACCCAACTTTGTACTAAACTT 58.712 34.615 0.00 0.00 0.00 2.66
5103 9202 6.838382 AGATGACCCAACTTTGTACTAAACT 58.162 36.000 0.00 0.00 0.00 2.66
5104 9203 8.788325 ATAGATGACCCAACTTTGTACTAAAC 57.212 34.615 0.00 0.00 0.00 2.01
5105 9204 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
5106 9205 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
5107 9206 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
5108 9207 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
5109 9208 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5110 9209 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5111 9210 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5112 9211 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5113 9212 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5114 9213 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5115 9214 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5116 9215 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5117 9216 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5118 9217 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5119 9218 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5120 9219 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5121 9220 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5122 9221 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5123 9222 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5124 9223 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5125 9224 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5126 9225 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5127 9226 4.717778 TCATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
5128 9227 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
5129 9228 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
5130 9229 2.500098 CTCATACTCCCTCCGTTCCAAA 59.500 50.000 0.00 0.00 0.00 3.28
5131 9230 2.108168 CTCATACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
5132 9231 1.776662 CTCATACTCCCTCCGTTCCA 58.223 55.000 0.00 0.00 0.00 3.53
5133 9232 0.389757 GCTCATACTCCCTCCGTTCC 59.610 60.000 0.00 0.00 0.00 3.62
5134 9233 1.404843 AGCTCATACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
5135 9234 2.750141 TAGCTCATACTCCCTCCGTT 57.250 50.000 0.00 0.00 0.00 4.44
5136 9235 2.108425 TCATAGCTCATACTCCCTCCGT 59.892 50.000 0.00 0.00 0.00 4.69
5137 9236 2.490115 GTCATAGCTCATACTCCCTCCG 59.510 54.545 0.00 0.00 0.00 4.63
5138 9237 3.773560 AGTCATAGCTCATACTCCCTCC 58.226 50.000 0.00 0.00 0.00 4.30
5139 9238 6.902771 TTTAGTCATAGCTCATACTCCCTC 57.097 41.667 0.00 0.00 0.00 4.30
5140 9239 7.123547 GCTATTTAGTCATAGCTCATACTCCCT 59.876 40.741 5.60 0.00 45.73 4.20
5141 9240 7.262048 GCTATTTAGTCATAGCTCATACTCCC 58.738 42.308 5.60 0.00 45.73 4.30
5303 9405 1.067915 CACAAATTAGGCACAACCCGG 60.068 52.381 0.00 0.00 40.58 5.73
5576 10402 5.635700 CCTCTGTAAAGGAATATAAGAGCGC 59.364 44.000 0.00 0.00 38.87 5.92
5676 10512 2.556257 TGTCCACATACACACACACAC 58.444 47.619 0.00 0.00 0.00 3.82
5677 10513 2.990066 TGTCCACATACACACACACA 57.010 45.000 0.00 0.00 0.00 3.72
5678 10514 3.664107 AGATGTCCACATACACACACAC 58.336 45.455 0.00 0.00 36.57 3.82
5679 10515 5.046663 ACATAGATGTCCACATACACACACA 60.047 40.000 0.00 0.00 35.87 3.72
5734 10578 1.610554 TACCTGCCGGACTAACCAGC 61.611 60.000 5.05 0.00 42.03 4.85
5748 10592 3.629398 GGGCATCTTCATTGAAGTACCTG 59.371 47.826 22.44 16.61 40.24 4.00
5782 11062 7.117236 AGCATTTGAGTTGTGCATATTTCAAAG 59.883 33.333 19.79 15.02 41.19 2.77
5969 11549 5.663456 TGAATTACGTAGGTGACAATACCC 58.337 41.667 0.00 0.00 41.83 3.69
6055 11636 7.954666 TTCCCCCTATAAAAGTTTTCAGATG 57.045 36.000 3.60 0.00 0.00 2.90
6192 11862 5.309323 TGTTCATGTTATTGTAGCAAGCC 57.691 39.130 0.00 0.00 0.00 4.35
6254 11925 8.023128 CCTGGATGTACAGTAAATTCAAAACAG 58.977 37.037 0.33 0.00 36.75 3.16
6261 11932 5.428253 TGCTCCTGGATGTACAGTAAATTC 58.572 41.667 0.33 0.00 36.75 2.17
6292 11963 1.810755 GGTTTCCGTTTTGGCTCTAGG 59.189 52.381 0.00 0.00 37.80 3.02
6294 11965 1.143277 TGGGTTTCCGTTTTGGCTCTA 59.857 47.619 0.00 0.00 37.80 2.43
6319 11990 3.040206 GCAGATGAGCCCAGGAGCA 62.040 63.158 3.08 0.00 34.23 4.26
6446 12122 0.676466 TTTGACACATAGCGGCTGGG 60.676 55.000 13.86 6.97 0.00 4.45
6493 12172 4.348486 AGAGAGCTCAGTGTCCAATTAGA 58.652 43.478 17.77 0.00 0.00 2.10
6601 12283 5.284079 TGAGACTTCAAGAATTTGCAAAGC 58.716 37.500 18.19 11.88 34.21 3.51
6764 12567 6.805271 GTGAGCTTCATTAGTACAAGTCGTAA 59.195 38.462 0.00 0.00 0.00 3.18
6784 12587 6.917217 AGCTCTTTTATATTGTGAGTGAGC 57.083 37.500 0.00 0.00 43.01 4.26
6798 12602 8.705594 AGTCTATGTAGGCAAATAGCTCTTTTA 58.294 33.333 0.00 0.00 44.79 1.52
6807 12611 9.764363 CTACAATCAAGTCTATGTAGGCAAATA 57.236 33.333 4.32 0.00 40.83 1.40
6831 12636 7.722728 TCTCAGTAGGAAACACTTTCTGTACTA 59.277 37.037 0.00 0.00 37.32 1.82
6839 12644 4.141711 TGCTGTCTCAGTAGGAAACACTTT 60.142 41.667 0.00 0.00 33.43 2.66
6853 12658 1.632589 TTCCTACAGCTGCTGTCTCA 58.367 50.000 35.98 19.65 41.21 3.27
6888 12694 1.739466 GCATTCTTTCGGCATGACTGA 59.261 47.619 0.00 0.00 0.00 3.41
6895 12701 6.759272 AGACTATATAAGCATTCTTTCGGCA 58.241 36.000 0.00 0.00 33.85 5.69
6938 12745 8.099698 GCTAGAGCCAAACTGATTAGTTCAGC 62.100 46.154 13.58 13.58 44.57 4.26
6973 12780 7.629157 TCTATCAACCCTACATGAATGAACAA 58.371 34.615 0.00 0.00 0.00 2.83
7012 12820 8.743714 GTCAGTCTAAGAAAATGGGATGAAAAT 58.256 33.333 0.00 0.00 0.00 1.82
7036 12844 6.128254 GCAAGTATTAGTCTGAAAACCCAGTC 60.128 42.308 0.00 0.00 35.71 3.51
7093 12928 6.645790 AAGAGCACTGAAATGAATGAAACT 57.354 33.333 0.00 0.00 0.00 2.66
7181 13016 4.486090 TCAAGAAAAGACGATCGAAGGAG 58.514 43.478 24.34 2.47 0.00 3.69
7227 13063 5.524971 ACAACAATATGGGAATCTGCATG 57.475 39.130 0.00 0.00 0.00 4.06
7228 13064 6.070653 ACAAACAACAATATGGGAATCTGCAT 60.071 34.615 0.00 0.00 0.00 3.96
7294 13130 0.934496 TGCACAGAAACTACACGCAC 59.066 50.000 0.00 0.00 0.00 5.34
7295 13131 1.329292 GTTGCACAGAAACTACACGCA 59.671 47.619 0.00 0.00 0.00 5.24
7296 13132 1.333791 GGTTGCACAGAAACTACACGC 60.334 52.381 0.00 0.00 0.00 5.34
7297 13133 1.937223 TGGTTGCACAGAAACTACACG 59.063 47.619 0.00 0.00 0.00 4.49
7319 13155 3.937706 AGCAGACAAGTGCAGATAATCAC 59.062 43.478 0.00 0.00 46.60 3.06
7407 13281 5.781210 TTTAGACAAAATGATGTGTGGCA 57.219 34.783 0.00 0.00 32.57 4.92
7739 13613 3.826157 AGATGTCATTGCCGGAAGAAAAA 59.174 39.130 5.05 0.00 0.00 1.94
7740 13614 3.420893 AGATGTCATTGCCGGAAGAAAA 58.579 40.909 5.05 0.00 0.00 2.29
7747 13621 1.097547 GTGGGAGATGTCATTGCCGG 61.098 60.000 0.00 0.00 0.00 6.13
7757 13631 2.593978 CAGCAGGGGTGGGAGATG 59.406 66.667 0.00 0.00 0.00 2.90
7816 13693 1.325640 CATCTTCCTGCGAACATCACG 59.674 52.381 0.00 0.00 0.00 4.35
7825 13702 3.388308 CTCACCTTATCATCTTCCTGCG 58.612 50.000 0.00 0.00 0.00 5.18
7835 13712 1.823295 GGCGAGCCTCACCTTATCA 59.177 57.895 6.90 0.00 0.00 2.15
8109 14005 5.329191 TGAGAAAATGATCATGGGGCTAT 57.671 39.130 9.46 0.00 0.00 2.97
8134 14030 6.419710 CCCATGTACTACATACGTACACAATG 59.580 42.308 0.00 0.00 46.84 2.82
8143 14039 1.000607 AGCGCCCATGTACTACATACG 60.001 52.381 2.29 7.49 36.53 3.06
8144 14040 2.404215 CAGCGCCCATGTACTACATAC 58.596 52.381 2.29 0.00 36.53 2.39
8145 14041 1.270094 GCAGCGCCCATGTACTACATA 60.270 52.381 2.29 0.00 36.53 2.29
8146 14042 0.532862 GCAGCGCCCATGTACTACAT 60.533 55.000 2.29 0.00 39.91 2.29
8165 14061 7.772166 AGTAGTTTCAGAAAAGTTTTCCCTTG 58.228 34.615 21.92 14.97 30.64 3.61
8229 14156 1.133025 GTGATTTCACTGGCAATCCCG 59.867 52.381 3.45 0.00 43.25 5.14
8258 14196 2.827322 CACATTGCCTTTGATTCCTCCA 59.173 45.455 0.00 0.00 0.00 3.86
8331 14269 3.187227 CCACAGCAAAGACAGTGACATAC 59.813 47.826 0.00 0.00 33.99 2.39
8379 14317 5.425217 ACAGGAACCCAATCTCTTTGTTTTT 59.575 36.000 0.00 0.00 33.15 1.94
8385 14323 2.819348 GCCACAGGAACCCAATCTCTTT 60.819 50.000 0.00 0.00 0.00 2.52
8442 14381 7.990886 TGGAGGTAAAGCAAATAACGATATCTT 59.009 33.333 0.34 0.00 0.00 2.40
8447 14386 8.691661 ATAATGGAGGTAAAGCAAATAACGAT 57.308 30.769 0.00 0.00 0.00 3.73
8482 14421 8.183493 TGTAGCAACAATAATGGAGGTTTTCCT 61.183 37.037 0.00 0.00 42.62 3.36
8483 14422 5.405935 AGCAACAATAATGGAGGTTTTCC 57.594 39.130 0.00 0.00 46.98 3.13
8484 14423 6.919721 TGTAGCAACAATAATGGAGGTTTTC 58.080 36.000 0.00 0.00 30.91 2.29
8485 14424 6.493458 ACTGTAGCAACAATAATGGAGGTTTT 59.507 34.615 0.00 0.00 34.49 2.43
8486 14425 6.010219 ACTGTAGCAACAATAATGGAGGTTT 58.990 36.000 0.00 0.00 34.49 3.27
8487 14426 5.570320 ACTGTAGCAACAATAATGGAGGTT 58.430 37.500 0.00 0.00 34.49 3.50
8622 14567 1.948145 GAAGCCATGATGCCTTCTCTG 59.052 52.381 8.73 0.00 0.00 3.35
8625 14570 2.097825 GTTGAAGCCATGATGCCTTCT 58.902 47.619 15.89 0.00 0.00 2.85
8688 14633 3.368495 GTTTGGTTCATTGTTGGTCGAC 58.632 45.455 7.13 7.13 0.00 4.20
8723 14668 2.737376 GACACGAACGAGGTGGCC 60.737 66.667 0.00 0.00 37.45 5.36
8746 14691 1.737793 GGTAGAATTCAACCAGTGCCG 59.262 52.381 8.44 0.00 35.73 5.69
8791 14736 6.539103 AGCGGAATTTCTACTTTCTTATGGAC 59.461 38.462 0.00 0.00 0.00 4.02
8851 14797 6.714810 GGAAAATGGCACCTTAATTTCCTTTT 59.285 34.615 14.35 4.04 41.49 2.27
8861 14807 1.089123 AGGGGGAAAATGGCACCTTA 58.911 50.000 0.00 0.00 0.00 2.69
8893 14840 2.627945 TGTAATGTGGATCCGCAAGAC 58.372 47.619 30.71 27.54 40.01 3.01
8900 14847 6.757897 TTTGATGTCTTGTAATGTGGATCC 57.242 37.500 4.20 4.20 0.00 3.36
8938 14885 8.966868 CATTCAGTTGTAAATTGGTATTACCCT 58.033 33.333 10.37 0.00 37.50 4.34
8947 14894 5.634859 GGCTTGTCATTCAGTTGTAAATTGG 59.365 40.000 0.00 0.00 33.92 3.16
8965 14912 0.036388 CCATAGTGTGTCGGGCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
8982 14929 6.650120 ACAGTGTAGAAAAGAAGACTTTCCA 58.350 36.000 0.00 0.00 44.32 3.53
8984 14931 7.772332 TGACAGTGTAGAAAAGAAGACTTTC 57.228 36.000 0.00 0.00 44.32 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.