Multiple sequence alignment - TraesCS1A01G072600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G072600 chr1A 100.000 2453 0 0 1 2453 56616876 56619328 0.000000e+00 4530
1 TraesCS1A01G072600 chr1B 88.091 2158 157 42 1 2083 92871048 92873180 0.000000e+00 2470
2 TraesCS1A01G072600 chr1D 91.434 1611 91 14 268 1836 57476333 57477938 0.000000e+00 2167
3 TraesCS1A01G072600 chr1D 83.966 237 30 4 1852 2081 57477992 57478227 1.140000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G072600 chr1A 56616876 56619328 2452 False 4530.0 4530 100.000 1 2453 1 chr1A.!!$F1 2452
1 TraesCS1A01G072600 chr1B 92871048 92873180 2132 False 2470.0 2470 88.091 1 2083 1 chr1B.!!$F1 2082
2 TraesCS1A01G072600 chr1D 57476333 57478227 1894 False 1193.5 2167 87.700 268 2081 2 chr1D.!!$F1 1813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 728 0.173708 GGAGGAGTTCGTCGCAGATT 59.826 55.0 0.0 0.0 40.67 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2416 2547 0.179073 GACAGTGGTGCGGCTATGAT 60.179 55.0 0.0 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.476085 CAAAGAGTTTGCCACACCACA 59.524 47.619 0.00 0.00 33.36 4.17
40 41 1.603456 TTGCCACACCACATGTACAG 58.397 50.000 0.00 0.00 40.64 2.74
41 42 0.888736 TGCCACACCACATGTACAGC 60.889 55.000 0.00 0.00 40.64 4.40
42 43 1.586154 GCCACACCACATGTACAGCC 61.586 60.000 0.00 0.00 40.64 4.85
44 45 1.614051 CCACACCACATGTACAGCCAT 60.614 52.381 0.00 0.00 40.64 4.40
49 50 4.653801 ACACCACATGTACAGCCATATAGA 59.346 41.667 0.00 0.00 40.88 1.98
53 54 7.229306 CACCACATGTACAGCCATATAGAAATT 59.771 37.037 0.00 0.00 0.00 1.82
61 62 4.763793 CAGCCATATAGAAATTGTCCTGGG 59.236 45.833 0.00 0.00 0.00 4.45
62 63 3.507622 GCCATATAGAAATTGTCCTGGGC 59.492 47.826 0.00 0.00 0.00 5.36
75 76 1.762957 TCCTGGGCTCTACATACAAGC 59.237 52.381 0.00 0.00 35.27 4.01
89 90 4.637534 ACATACAAGCTTCTGAAATCGCAT 59.362 37.500 0.00 0.00 0.00 4.73
91 92 4.088823 ACAAGCTTCTGAAATCGCATTC 57.911 40.909 0.00 0.00 0.00 2.67
97 98 2.814269 TCTGAAATCGCATTCTCTCCG 58.186 47.619 2.45 0.00 0.00 4.63
98 99 1.260033 CTGAAATCGCATTCTCTCCGC 59.740 52.381 2.45 0.00 0.00 5.54
105 106 0.530650 GCATTCTCTCCGCGGATTCA 60.531 55.000 31.19 14.83 0.00 2.57
107 108 1.863454 CATTCTCTCCGCGGATTCAAG 59.137 52.381 31.19 22.16 0.00 3.02
147 149 1.173913 ACAAAGCTTATTCACCCGCC 58.826 50.000 0.00 0.00 0.00 6.13
169 171 6.093495 CGCCTTTGGTTGATTAGTTGAGAATA 59.907 38.462 0.00 0.00 0.00 1.75
199 201 4.711399 CTGCATCTGAAATGACCCATCTA 58.289 43.478 0.00 0.00 0.00 1.98
212 214 1.338200 CCCATCTATTGCCTAGACGCC 60.338 57.143 0.00 0.00 39.28 5.68
226 228 2.355718 CGCCGGGCCAACAAAAAG 60.356 61.111 14.55 0.00 0.00 2.27
228 230 1.145156 GCCGGGCCAACAAAAAGTT 59.855 52.632 8.12 0.00 42.42 2.66
276 280 2.609459 CCACTCTGCATTAACCGATGTC 59.391 50.000 0.00 0.00 0.00 3.06
280 284 1.004610 CTGCATTAACCGATGTCTGCG 60.005 52.381 0.00 0.00 30.91 5.18
297 301 2.522638 CGTGGTAGGATTTCGGCGC 61.523 63.158 0.00 0.00 0.00 6.53
315 319 4.202060 CGGCGCAACTAGATGGAGATATAT 60.202 45.833 10.83 0.00 0.00 0.86
317 321 5.163509 GGCGCAACTAGATGGAGATATATCA 60.164 44.000 10.83 0.00 0.00 2.15
504 518 2.289565 GCTTAGAAACCTTCCCCATCG 58.710 52.381 0.00 0.00 0.00 3.84
550 564 1.090052 CCCGGAGTTGCCTTCGATTC 61.090 60.000 0.73 0.00 42.67 2.52
579 597 1.208165 TCCTGCTTTCTCCCTTCCCC 61.208 60.000 0.00 0.00 0.00 4.81
601 621 5.189934 CCCTTCTTATTTCAGTCCCTGTAGT 59.810 44.000 0.00 0.00 32.61 2.73
604 624 7.119846 CCTTCTTATTTCAGTCCCTGTAGTTTG 59.880 40.741 0.00 0.00 32.61 2.93
605 625 6.472887 TCTTATTTCAGTCCCTGTAGTTTGG 58.527 40.000 0.00 0.00 32.61 3.28
610 630 4.457466 TCAGTCCCTGTAGTTTGGTTTTC 58.543 43.478 0.00 0.00 32.61 2.29
612 632 3.462205 AGTCCCTGTAGTTTGGTTTTCCT 59.538 43.478 0.00 0.00 41.38 3.36
614 634 5.133153 AGTCCCTGTAGTTTGGTTTTCCTTA 59.867 40.000 0.00 0.00 41.38 2.69
616 636 6.016527 GTCCCTGTAGTTTGGTTTTCCTTAAG 60.017 42.308 0.00 0.00 41.38 1.85
661 681 0.978146 TAAGCCCCTGAGCTCTGTCC 60.978 60.000 16.19 4.95 44.11 4.02
662 682 2.686835 GCCCCTGAGCTCTGTCCT 60.687 66.667 16.19 0.00 0.00 3.85
674 694 3.117322 AGCTCTGTCCTATTCTAGCCTCA 60.117 47.826 0.00 0.00 0.00 3.86
687 707 0.980423 AGCCTCAACTCCTTGGTCTC 59.020 55.000 0.00 0.00 0.00 3.36
708 728 0.173708 GGAGGAGTTCGTCGCAGATT 59.826 55.000 0.00 0.00 40.67 2.40
746 766 1.591504 CGCACCACCCATGTTTACCC 61.592 60.000 0.00 0.00 0.00 3.69
864 884 2.190578 CATGAACTCCTCGCCCCC 59.809 66.667 0.00 0.00 0.00 5.40
940 963 2.816672 CCACTTTCTTGCCTTCTTCCTC 59.183 50.000 0.00 0.00 0.00 3.71
944 967 0.475632 TCTTGCCTTCTTCCTCCCCA 60.476 55.000 0.00 0.00 0.00 4.96
1196 1221 3.068881 CCTCCAGGCCGAGAACAA 58.931 61.111 9.08 0.00 30.97 2.83
1368 1393 1.152226 GGACATCCCGGAGATCCCT 60.152 63.158 0.73 0.00 30.59 4.20
1473 1508 0.518636 CCAAGACAAGTCATGCCACG 59.481 55.000 2.72 0.00 0.00 4.94
1503 1540 0.035820 GCCACCGTGGATAAGGTTGA 60.036 55.000 22.37 0.00 40.96 3.18
1515 1557 6.017605 GTGGATAAGGTTGATGATTACTGCTG 60.018 42.308 0.00 0.00 0.00 4.41
1531 1573 0.179161 GCTGCTGCTGCTGAAGAATG 60.179 55.000 23.39 0.00 40.01 2.67
1667 1741 3.581024 ACAATGTCATTGATGTGTGGC 57.419 42.857 28.28 0.00 42.83 5.01
1744 1820 7.445096 TGACATGGAACCTATATATGTTTGCAG 59.555 37.037 5.08 0.89 32.58 4.41
1773 1853 3.191371 AGCTATGTGTTACTTTGGCAAGC 59.809 43.478 0.00 0.00 32.57 4.01
1798 1878 9.464248 GCGTTTGATTGAATTTTATGAAATGAC 57.536 29.630 0.00 0.00 35.69 3.06
1818 1898 2.362077 ACCCAAGTTGATTGTTGAGTGC 59.638 45.455 3.87 0.00 37.17 4.40
1838 1918 7.385478 TGAGTGCTGATTATGTTACGTTTGTAA 59.615 33.333 0.00 0.00 38.22 2.41
1864 1988 5.930837 TGATATACCCCTTTTGCCAAAAG 57.069 39.130 20.52 20.52 45.78 2.27
1873 1997 5.337250 CCCCTTTTGCCAAAAGTAGATTACC 60.337 44.000 24.16 0.00 44.96 2.85
1876 2000 5.975693 TTTGCCAAAAGTAGATTACCCAG 57.024 39.130 0.00 0.00 0.00 4.45
1892 2018 8.428063 AGATTACCCAGAGATTGTATCTGAAAG 58.572 37.037 4.57 0.00 45.80 2.62
1910 2036 6.149973 TCTGAAAGTATCAATGCACTCCTTTG 59.850 38.462 0.00 0.00 37.67 2.77
1916 2042 3.411446 TCAATGCACTCCTTTGTACCTG 58.589 45.455 0.00 0.00 32.19 4.00
1928 2054 7.136822 TCCTTTGTACCTGATATATGTGCTT 57.863 36.000 0.00 0.00 0.00 3.91
1943 2069 2.880268 TGTGCTTTGAACCTGTGATGAG 59.120 45.455 0.00 0.00 0.00 2.90
1957 2083 3.181462 TGTGATGAGCGGAGAATTGCTAT 60.181 43.478 0.00 0.00 42.60 2.97
2007 2133 3.592381 CATTTGCTGCTGTACGGATAC 57.408 47.619 5.68 0.00 0.00 2.24
2038 2164 4.525912 AAAAATTGCGAGCCTGATCTTT 57.474 36.364 0.00 0.00 0.00 2.52
2040 2166 3.772060 AATTGCGAGCCTGATCTTTTC 57.228 42.857 0.00 0.00 0.00 2.29
2043 2169 2.079158 TGCGAGCCTGATCTTTTCTTG 58.921 47.619 0.00 0.00 0.00 3.02
2044 2170 1.399791 GCGAGCCTGATCTTTTCTTGG 59.600 52.381 0.00 0.00 0.00 3.61
2056 2187 5.964887 TCTTTTCTTGGAAATTTGCGTTG 57.035 34.783 5.16 0.00 0.00 4.10
2066 2197 6.450545 TGGAAATTTGCGTTGATTGTGATTA 58.549 32.000 5.16 0.00 0.00 1.75
2071 2202 4.340894 TGCGTTGATTGTGATTAGCTTC 57.659 40.909 0.00 0.00 0.00 3.86
2083 2214 7.421530 TGTGATTAGCTTCTGTTTAGAACAC 57.578 36.000 0.00 0.00 37.99 3.32
2084 2215 6.145534 TGTGATTAGCTTCTGTTTAGAACACG 59.854 38.462 0.00 0.00 37.99 4.49
2085 2216 4.985044 TTAGCTTCTGTTTAGAACACGC 57.015 40.909 0.00 0.00 37.99 5.34
2086 2217 2.833794 AGCTTCTGTTTAGAACACGCA 58.166 42.857 0.00 0.00 37.99 5.24
2087 2218 2.802816 AGCTTCTGTTTAGAACACGCAG 59.197 45.455 0.00 0.00 37.99 5.18
2088 2219 2.544267 GCTTCTGTTTAGAACACGCAGT 59.456 45.455 0.00 0.00 38.81 4.40
2089 2220 3.002348 GCTTCTGTTTAGAACACGCAGTT 59.998 43.478 0.00 0.00 44.93 3.16
2090 2221 4.495844 GCTTCTGTTTAGAACACGCAGTTT 60.496 41.667 0.00 0.00 41.51 2.66
2091 2222 5.554822 TTCTGTTTAGAACACGCAGTTTT 57.445 34.783 0.00 0.00 41.51 2.43
2092 2223 5.151632 TCTGTTTAGAACACGCAGTTTTC 57.848 39.130 0.00 0.00 46.44 2.29
2101 2232 6.984740 GAACACGCAGTTTTCATTCATAAA 57.015 33.333 0.00 0.00 45.50 1.40
2102 2233 7.388290 GAACACGCAGTTTTCATTCATAAAA 57.612 32.000 0.00 0.00 45.50 1.52
2103 2234 7.763172 AACACGCAGTTTTCATTCATAAAAA 57.237 28.000 0.00 0.00 41.61 1.94
2130 2261 9.740710 ATTAGTATTAGATTGGTCCATTAAGGC 57.259 33.333 0.00 0.00 37.29 4.35
2131 2262 6.231211 AGTATTAGATTGGTCCATTAAGGCG 58.769 40.000 0.00 0.00 37.29 5.52
2132 2263 4.497291 TTAGATTGGTCCATTAAGGCGT 57.503 40.909 0.00 0.00 37.29 5.68
2133 2264 2.919228 AGATTGGTCCATTAAGGCGTC 58.081 47.619 0.00 0.00 37.29 5.19
2134 2265 2.238646 AGATTGGTCCATTAAGGCGTCA 59.761 45.455 0.00 0.00 37.29 4.35
2135 2266 2.570415 TTGGTCCATTAAGGCGTCAA 57.430 45.000 0.00 0.00 37.29 3.18
2136 2267 2.107950 TGGTCCATTAAGGCGTCAAG 57.892 50.000 0.00 0.00 37.29 3.02
2148 2279 2.233738 GCGTCAAGCTTCTAGTTTGC 57.766 50.000 0.00 0.00 44.04 3.68
2149 2280 1.801178 GCGTCAAGCTTCTAGTTTGCT 59.199 47.619 0.00 0.00 44.04 3.91
2150 2281 2.224314 GCGTCAAGCTTCTAGTTTGCTT 59.776 45.455 0.00 11.63 46.38 3.91
2151 2282 3.665585 GCGTCAAGCTTCTAGTTTGCTTC 60.666 47.826 13.57 6.34 44.04 3.86
2152 2283 3.743396 CGTCAAGCTTCTAGTTTGCTTCT 59.257 43.478 13.57 0.00 44.04 2.85
2153 2284 4.212214 CGTCAAGCTTCTAGTTTGCTTCTT 59.788 41.667 13.57 0.00 44.04 2.52
2154 2285 5.405571 CGTCAAGCTTCTAGTTTGCTTCTTA 59.594 40.000 13.57 4.21 44.04 2.10
2155 2286 6.073765 CGTCAAGCTTCTAGTTTGCTTCTTAA 60.074 38.462 13.57 2.51 44.04 1.85
2156 2287 7.072647 GTCAAGCTTCTAGTTTGCTTCTTAAC 58.927 38.462 13.57 8.45 44.04 2.01
2157 2288 6.765989 TCAAGCTTCTAGTTTGCTTCTTAACA 59.234 34.615 13.57 0.00 44.04 2.41
2158 2289 7.282224 TCAAGCTTCTAGTTTGCTTCTTAACAA 59.718 33.333 13.57 0.00 44.04 2.83
2159 2290 7.568199 AGCTTCTAGTTTGCTTCTTAACAAA 57.432 32.000 0.00 0.00 32.61 2.83
2160 2291 7.643579 AGCTTCTAGTTTGCTTCTTAACAAAG 58.356 34.615 0.00 0.00 36.50 2.77
2161 2292 7.283354 AGCTTCTAGTTTGCTTCTTAACAAAGT 59.717 33.333 0.00 0.00 41.20 2.66
2162 2293 7.377131 GCTTCTAGTTTGCTTCTTAACAAAGTG 59.623 37.037 6.16 0.00 39.23 3.16
2163 2294 8.500753 TTCTAGTTTGCTTCTTAACAAAGTGA 57.499 30.769 6.16 0.80 39.23 3.41
2164 2295 8.142994 TCTAGTTTGCTTCTTAACAAAGTGAG 57.857 34.615 6.16 1.80 39.23 3.51
2165 2296 6.759497 AGTTTGCTTCTTAACAAAGTGAGT 57.241 33.333 0.00 0.00 37.87 3.41
2166 2297 6.786207 AGTTTGCTTCTTAACAAAGTGAGTC 58.214 36.000 0.00 0.00 37.87 3.36
2167 2298 5.403897 TTGCTTCTTAACAAAGTGAGTCG 57.596 39.130 0.00 0.00 0.00 4.18
2168 2299 4.689071 TGCTTCTTAACAAAGTGAGTCGA 58.311 39.130 0.00 0.00 0.00 4.20
2169 2300 5.297547 TGCTTCTTAACAAAGTGAGTCGAT 58.702 37.500 0.00 0.00 0.00 3.59
2170 2301 5.405571 TGCTTCTTAACAAAGTGAGTCGATC 59.594 40.000 0.00 0.00 0.00 3.69
2171 2302 5.405571 GCTTCTTAACAAAGTGAGTCGATCA 59.594 40.000 0.00 0.00 34.79 2.92
2172 2303 6.091441 GCTTCTTAACAAAGTGAGTCGATCAT 59.909 38.462 0.00 0.00 40.92 2.45
2173 2304 7.360438 GCTTCTTAACAAAGTGAGTCGATCATT 60.360 37.037 0.00 0.00 40.92 2.57
2174 2305 7.351414 TCTTAACAAAGTGAGTCGATCATTG 57.649 36.000 0.00 0.00 40.92 2.82
2175 2306 6.368791 TCTTAACAAAGTGAGTCGATCATTGG 59.631 38.462 12.00 4.73 40.92 3.16
2176 2307 4.008074 ACAAAGTGAGTCGATCATTGGT 57.992 40.909 12.00 5.13 40.92 3.67
2177 2308 4.389374 ACAAAGTGAGTCGATCATTGGTT 58.611 39.130 12.00 0.00 40.92 3.67
2178 2309 4.821805 ACAAAGTGAGTCGATCATTGGTTT 59.178 37.500 12.00 5.05 40.92 3.27
2179 2310 5.299279 ACAAAGTGAGTCGATCATTGGTTTT 59.701 36.000 12.00 4.19 40.92 2.43
2180 2311 6.485313 ACAAAGTGAGTCGATCATTGGTTTTA 59.515 34.615 12.00 0.00 40.92 1.52
2181 2312 6.727824 AAGTGAGTCGATCATTGGTTTTAG 57.272 37.500 0.00 0.00 40.92 1.85
2182 2313 4.631813 AGTGAGTCGATCATTGGTTTTAGC 59.368 41.667 0.00 0.00 40.92 3.09
2183 2314 4.631813 GTGAGTCGATCATTGGTTTTAGCT 59.368 41.667 0.00 0.00 40.92 3.32
2184 2315 4.870426 TGAGTCGATCATTGGTTTTAGCTC 59.130 41.667 0.00 0.00 31.12 4.09
2185 2316 3.865745 AGTCGATCATTGGTTTTAGCTCG 59.134 43.478 0.00 0.00 0.00 5.03
2186 2317 3.617263 GTCGATCATTGGTTTTAGCTCGT 59.383 43.478 0.00 0.00 0.00 4.18
2187 2318 4.092968 GTCGATCATTGGTTTTAGCTCGTT 59.907 41.667 0.00 0.00 0.00 3.85
2188 2319 5.290158 GTCGATCATTGGTTTTAGCTCGTTA 59.710 40.000 0.00 0.00 0.00 3.18
2189 2320 5.870433 TCGATCATTGGTTTTAGCTCGTTAA 59.130 36.000 0.00 0.00 0.00 2.01
2190 2321 6.369340 TCGATCATTGGTTTTAGCTCGTTAAA 59.631 34.615 0.00 0.00 0.00 1.52
2191 2322 6.464834 CGATCATTGGTTTTAGCTCGTTAAAC 59.535 38.462 0.00 0.00 0.00 2.01
2192 2323 6.870971 TCATTGGTTTTAGCTCGTTAAACT 57.129 33.333 0.00 0.00 33.44 2.66
2193 2324 7.266922 TCATTGGTTTTAGCTCGTTAAACTT 57.733 32.000 0.00 0.00 33.44 2.66
2194 2325 8.380743 TCATTGGTTTTAGCTCGTTAAACTTA 57.619 30.769 0.00 0.00 33.44 2.24
2195 2326 8.838365 TCATTGGTTTTAGCTCGTTAAACTTAA 58.162 29.630 0.00 0.00 33.44 1.85
2196 2327 9.620660 CATTGGTTTTAGCTCGTTAAACTTAAT 57.379 29.630 0.00 1.33 33.44 1.40
2197 2328 9.620660 ATTGGTTTTAGCTCGTTAAACTTAATG 57.379 29.630 0.00 0.00 33.44 1.90
2198 2329 8.380743 TGGTTTTAGCTCGTTAAACTTAATGA 57.619 30.769 0.00 4.49 36.58 2.57
2206 2337 7.829378 CTCGTTAAACTTAATGAGCTTACCT 57.171 36.000 15.16 0.00 44.84 3.08
2207 2338 8.922058 CTCGTTAAACTTAATGAGCTTACCTA 57.078 34.615 15.16 0.00 44.84 3.08
2208 2339 9.362539 CTCGTTAAACTTAATGAGCTTACCTAA 57.637 33.333 15.16 0.00 44.84 2.69
2209 2340 9.143631 TCGTTAAACTTAATGAGCTTACCTAAC 57.856 33.333 0.00 0.00 34.64 2.34
2210 2341 8.928733 CGTTAAACTTAATGAGCTTACCTAACA 58.071 33.333 0.00 0.00 32.66 2.41
2219 2350 3.515330 GCTTACCTAACAAGCTACCGA 57.485 47.619 0.00 0.00 44.04 4.69
2220 2351 3.853475 GCTTACCTAACAAGCTACCGAA 58.147 45.455 0.00 0.00 44.04 4.30
2221 2352 4.439968 GCTTACCTAACAAGCTACCGAAT 58.560 43.478 0.00 0.00 44.04 3.34
2222 2353 4.874396 GCTTACCTAACAAGCTACCGAATT 59.126 41.667 0.00 0.00 44.04 2.17
2223 2354 5.220605 GCTTACCTAACAAGCTACCGAATTG 60.221 44.000 0.00 0.00 44.04 2.32
2224 2355 3.007635 ACCTAACAAGCTACCGAATTGC 58.992 45.455 0.00 0.00 0.00 3.56
2225 2356 3.006940 CCTAACAAGCTACCGAATTGCA 58.993 45.455 0.00 0.00 0.00 4.08
2226 2357 2.989422 AACAAGCTACCGAATTGCAC 57.011 45.000 0.00 0.00 0.00 4.57
2227 2358 0.796312 ACAAGCTACCGAATTGCACG 59.204 50.000 0.00 0.00 0.00 5.34
2228 2359 1.075542 CAAGCTACCGAATTGCACGA 58.924 50.000 0.00 0.00 0.00 4.35
2229 2360 1.076332 AAGCTACCGAATTGCACGAC 58.924 50.000 0.00 0.00 0.00 4.34
2230 2361 0.739813 AGCTACCGAATTGCACGACC 60.740 55.000 0.00 0.00 0.00 4.79
2231 2362 1.017177 GCTACCGAATTGCACGACCA 61.017 55.000 0.00 0.00 0.00 4.02
2232 2363 1.434555 CTACCGAATTGCACGACCAA 58.565 50.000 0.00 0.00 0.00 3.67
2233 2364 1.801771 CTACCGAATTGCACGACCAAA 59.198 47.619 0.00 0.00 0.00 3.28
2234 2365 1.243902 ACCGAATTGCACGACCAAAT 58.756 45.000 0.00 0.00 0.00 2.32
2235 2366 1.611491 ACCGAATTGCACGACCAAATT 59.389 42.857 0.00 0.00 0.00 1.82
2236 2367 2.035321 ACCGAATTGCACGACCAAATTT 59.965 40.909 0.00 0.00 0.00 1.82
2237 2368 3.056304 CCGAATTGCACGACCAAATTTT 58.944 40.909 0.00 0.00 0.00 1.82
2238 2369 4.230657 CCGAATTGCACGACCAAATTTTA 58.769 39.130 0.00 0.00 0.00 1.52
2239 2370 4.681942 CCGAATTGCACGACCAAATTTTAA 59.318 37.500 0.00 0.00 0.00 1.52
2240 2371 5.164100 CCGAATTGCACGACCAAATTTTAAG 60.164 40.000 0.00 0.00 0.00 1.85
2241 2372 5.590104 AATTGCACGACCAAATTTTAAGC 57.410 34.783 0.00 0.00 0.00 3.09
2242 2373 3.019933 TGCACGACCAAATTTTAAGCC 57.980 42.857 0.00 0.00 0.00 4.35
2243 2374 2.288518 TGCACGACCAAATTTTAAGCCC 60.289 45.455 0.00 0.00 0.00 5.19
2244 2375 2.929161 GCACGACCAAATTTTAAGCCCC 60.929 50.000 0.00 0.00 0.00 5.80
2245 2376 2.560981 CACGACCAAATTTTAAGCCCCT 59.439 45.455 0.00 0.00 0.00 4.79
2246 2377 3.759618 CACGACCAAATTTTAAGCCCCTA 59.240 43.478 0.00 0.00 0.00 3.53
2247 2378 4.218852 CACGACCAAATTTTAAGCCCCTAA 59.781 41.667 0.00 0.00 0.00 2.69
2248 2379 5.020795 ACGACCAAATTTTAAGCCCCTAAT 58.979 37.500 0.00 0.00 0.00 1.73
2249 2380 6.095720 CACGACCAAATTTTAAGCCCCTAATA 59.904 38.462 0.00 0.00 0.00 0.98
2250 2381 6.095860 ACGACCAAATTTTAAGCCCCTAATAC 59.904 38.462 0.00 0.00 0.00 1.89
2251 2382 6.095720 CGACCAAATTTTAAGCCCCTAATACA 59.904 38.462 0.00 0.00 0.00 2.29
2252 2383 7.363094 CGACCAAATTTTAAGCCCCTAATACAA 60.363 37.037 0.00 0.00 0.00 2.41
2253 2384 7.617225 ACCAAATTTTAAGCCCCTAATACAAC 58.383 34.615 0.00 0.00 0.00 3.32
2254 2385 7.235812 ACCAAATTTTAAGCCCCTAATACAACA 59.764 33.333 0.00 0.00 0.00 3.33
2255 2386 7.547722 CCAAATTTTAAGCCCCTAATACAACAC 59.452 37.037 0.00 0.00 0.00 3.32
2256 2387 7.784470 AATTTTAAGCCCCTAATACAACACA 57.216 32.000 0.00 0.00 0.00 3.72
2257 2388 7.784470 ATTTTAAGCCCCTAATACAACACAA 57.216 32.000 0.00 0.00 0.00 3.33
2258 2389 6.578163 TTTAAGCCCCTAATACAACACAAC 57.422 37.500 0.00 0.00 0.00 3.32
2259 2390 3.799432 AGCCCCTAATACAACACAACA 57.201 42.857 0.00 0.00 0.00 3.33
2260 2391 3.418047 AGCCCCTAATACAACACAACAC 58.582 45.455 0.00 0.00 0.00 3.32
2261 2392 3.150767 GCCCCTAATACAACACAACACA 58.849 45.455 0.00 0.00 0.00 3.72
2262 2393 3.057806 GCCCCTAATACAACACAACACAC 60.058 47.826 0.00 0.00 0.00 3.82
2263 2394 4.394729 CCCCTAATACAACACAACACACT 58.605 43.478 0.00 0.00 0.00 3.55
2264 2395 4.825085 CCCCTAATACAACACAACACACTT 59.175 41.667 0.00 0.00 0.00 3.16
2265 2396 5.278266 CCCCTAATACAACACAACACACTTG 60.278 44.000 0.00 0.00 0.00 3.16
2266 2397 5.298276 CCCTAATACAACACAACACACTTGT 59.702 40.000 0.00 0.00 37.67 3.16
2268 2399 7.012515 CCCTAATACAACACAACACACTTGTTA 59.987 37.037 0.00 0.00 44.57 2.41
2269 2400 8.067784 CCTAATACAACACAACACACTTGTTAG 58.932 37.037 0.00 0.00 44.57 2.34
2270 2401 4.695217 ACAACACAACACACTTGTTAGG 57.305 40.909 0.00 0.00 44.57 2.69
2271 2402 3.119637 ACAACACAACACACTTGTTAGGC 60.120 43.478 0.00 0.00 44.57 3.93
2272 2403 2.999331 ACACAACACACTTGTTAGGCT 58.001 42.857 0.00 0.00 44.57 4.58
2273 2404 2.943033 ACACAACACACTTGTTAGGCTC 59.057 45.455 0.00 0.00 44.57 4.70
2274 2405 2.290641 CACAACACACTTGTTAGGCTCC 59.709 50.000 0.00 0.00 44.57 4.70
2275 2406 2.172717 ACAACACACTTGTTAGGCTCCT 59.827 45.455 0.00 0.00 44.57 3.69
2276 2407 3.389983 ACAACACACTTGTTAGGCTCCTA 59.610 43.478 0.00 0.00 44.57 2.94
2277 2408 4.141574 ACAACACACTTGTTAGGCTCCTAA 60.142 41.667 4.34 4.34 44.57 2.69
2278 2409 4.910458 ACACACTTGTTAGGCTCCTAAT 57.090 40.909 11.19 0.00 40.18 1.73
2279 2410 6.170506 CAACACACTTGTTAGGCTCCTAATA 58.829 40.000 11.19 6.37 44.57 0.98
2280 2411 5.731591 ACACACTTGTTAGGCTCCTAATAC 58.268 41.667 11.19 1.88 40.18 1.89
2281 2412 5.247564 ACACACTTGTTAGGCTCCTAATACA 59.752 40.000 11.19 4.35 40.18 2.29
2282 2413 5.812642 CACACTTGTTAGGCTCCTAATACAG 59.187 44.000 11.19 9.77 40.18 2.74
2283 2414 4.811557 CACTTGTTAGGCTCCTAATACAGC 59.188 45.833 11.19 0.08 40.18 4.40
2284 2415 4.469945 ACTTGTTAGGCTCCTAATACAGCA 59.530 41.667 11.19 2.49 40.18 4.41
2285 2416 4.402056 TGTTAGGCTCCTAATACAGCAC 57.598 45.455 11.19 0.00 40.18 4.40
2286 2417 3.772572 TGTTAGGCTCCTAATACAGCACA 59.227 43.478 11.19 1.74 40.18 4.57
2287 2418 4.224147 TGTTAGGCTCCTAATACAGCACAA 59.776 41.667 11.19 0.00 40.18 3.33
2288 2419 5.104527 TGTTAGGCTCCTAATACAGCACAAT 60.105 40.000 11.19 0.00 40.18 2.71
2289 2420 3.813443 AGGCTCCTAATACAGCACAATG 58.187 45.455 0.00 0.00 37.38 2.82
2290 2421 2.291741 GGCTCCTAATACAGCACAATGC 59.708 50.000 0.00 0.00 45.46 3.56
2291 2422 8.542646 TTAGGCTCCTAATACAGCACAATGCA 62.543 42.308 4.34 0.00 38.47 3.96
2292 2423 9.751630 TTAGGCTCCTAATACAGCACAATGCAT 62.752 40.741 4.34 0.00 38.47 3.96
2325 2456 9.562583 TTATCTTAAATGACAACGTTTAATGGC 57.437 29.630 0.00 0.00 42.62 4.40
2326 2457 6.971602 TCTTAAATGACAACGTTTAATGGCA 58.028 32.000 0.00 0.00 42.62 4.92
2328 2459 7.753132 TCTTAAATGACAACGTTTAATGGCATC 59.247 33.333 6.76 0.00 44.42 3.91
2329 2460 5.643379 AATGACAACGTTTAATGGCATCT 57.357 34.783 6.76 0.00 44.42 2.90
2330 2461 4.678509 TGACAACGTTTAATGGCATCTC 57.321 40.909 0.00 0.00 27.07 2.75
2331 2462 3.124466 TGACAACGTTTAATGGCATCTCG 59.876 43.478 0.00 6.26 27.07 4.04
2332 2463 2.418628 ACAACGTTTAATGGCATCTCGG 59.581 45.455 0.00 0.00 0.00 4.63
2333 2464 1.663695 ACGTTTAATGGCATCTCGGG 58.336 50.000 0.00 0.00 0.00 5.14
2334 2465 0.307760 CGTTTAATGGCATCTCGGGC 59.692 55.000 0.00 0.00 0.00 6.13
2335 2466 1.680338 GTTTAATGGCATCTCGGGCT 58.320 50.000 0.00 0.00 0.00 5.19
2336 2467 2.024414 GTTTAATGGCATCTCGGGCTT 58.976 47.619 0.00 0.00 0.00 4.35
2337 2468 2.427095 GTTTAATGGCATCTCGGGCTTT 59.573 45.455 0.00 0.00 35.40 3.51
2338 2469 1.967319 TAATGGCATCTCGGGCTTTC 58.033 50.000 0.00 0.00 33.66 2.62
2339 2470 0.257039 AATGGCATCTCGGGCTTTCT 59.743 50.000 0.00 0.00 0.00 2.52
2340 2471 1.131638 ATGGCATCTCGGGCTTTCTA 58.868 50.000 0.00 0.00 0.00 2.10
2341 2472 1.131638 TGGCATCTCGGGCTTTCTAT 58.868 50.000 0.00 0.00 0.00 1.98
2342 2473 1.490490 TGGCATCTCGGGCTTTCTATT 59.510 47.619 0.00 0.00 0.00 1.73
2343 2474 2.147150 GGCATCTCGGGCTTTCTATTC 58.853 52.381 0.00 0.00 0.00 1.75
2344 2475 2.147150 GCATCTCGGGCTTTCTATTCC 58.853 52.381 0.00 0.00 0.00 3.01
2345 2476 2.485479 GCATCTCGGGCTTTCTATTCCA 60.485 50.000 0.00 0.00 0.00 3.53
2346 2477 3.808618 GCATCTCGGGCTTTCTATTCCAT 60.809 47.826 0.00 0.00 0.00 3.41
2347 2478 3.753294 TCTCGGGCTTTCTATTCCATC 57.247 47.619 0.00 0.00 0.00 3.51
2348 2479 2.035961 TCTCGGGCTTTCTATTCCATCG 59.964 50.000 0.00 0.00 0.00 3.84
2349 2480 2.035961 CTCGGGCTTTCTATTCCATCGA 59.964 50.000 0.00 0.00 0.00 3.59
2350 2481 2.432874 TCGGGCTTTCTATTCCATCGAA 59.567 45.455 0.00 0.00 0.00 3.71
2351 2482 3.071023 TCGGGCTTTCTATTCCATCGAAT 59.929 43.478 0.00 0.00 41.67 3.34
2352 2483 3.433615 CGGGCTTTCTATTCCATCGAATC 59.566 47.826 0.00 0.00 39.49 2.52
2353 2484 3.433615 GGGCTTTCTATTCCATCGAATCG 59.566 47.826 0.00 0.00 39.49 3.34
2354 2485 4.307432 GGCTTTCTATTCCATCGAATCGA 58.693 43.478 8.12 8.12 39.49 3.59
2355 2486 4.150804 GGCTTTCTATTCCATCGAATCGAC 59.849 45.833 7.77 0.00 39.18 4.20
2356 2487 4.985409 GCTTTCTATTCCATCGAATCGACT 59.015 41.667 7.77 0.00 39.18 4.18
2357 2488 5.117897 GCTTTCTATTCCATCGAATCGACTC 59.882 44.000 7.77 0.00 39.18 3.36
2358 2489 5.767816 TTCTATTCCATCGAATCGACTCA 57.232 39.130 7.77 0.00 39.18 3.41
2359 2490 5.966742 TCTATTCCATCGAATCGACTCAT 57.033 39.130 7.77 0.66 39.18 2.90
2360 2491 6.332735 TCTATTCCATCGAATCGACTCATT 57.667 37.500 7.77 0.00 39.18 2.57
2361 2492 6.382608 TCTATTCCATCGAATCGACTCATTC 58.617 40.000 7.77 0.00 39.18 2.67
2362 2493 3.371102 TCCATCGAATCGACTCATTCC 57.629 47.619 7.77 0.00 39.18 3.01
2363 2494 2.693074 TCCATCGAATCGACTCATTCCA 59.307 45.455 7.77 0.00 39.18 3.53
2364 2495 3.055591 CCATCGAATCGACTCATTCCAG 58.944 50.000 7.77 0.00 39.18 3.86
2365 2496 3.243535 CCATCGAATCGACTCATTCCAGA 60.244 47.826 7.77 0.00 39.18 3.86
2366 2497 3.422417 TCGAATCGACTCATTCCAGAC 57.578 47.619 0.00 0.00 30.03 3.51
2367 2498 3.017442 TCGAATCGACTCATTCCAGACT 58.983 45.455 0.00 0.00 30.03 3.24
2368 2499 4.196971 TCGAATCGACTCATTCCAGACTA 58.803 43.478 0.00 0.00 30.03 2.59
2369 2500 4.638865 TCGAATCGACTCATTCCAGACTAA 59.361 41.667 0.00 0.00 30.03 2.24
2370 2501 5.299531 TCGAATCGACTCATTCCAGACTAAT 59.700 40.000 0.00 0.00 30.03 1.73
2371 2502 6.485648 TCGAATCGACTCATTCCAGACTAATA 59.514 38.462 0.00 0.00 30.03 0.98
2372 2503 7.012989 TCGAATCGACTCATTCCAGACTAATAA 59.987 37.037 0.00 0.00 30.03 1.40
2373 2504 7.113684 CGAATCGACTCATTCCAGACTAATAAC 59.886 40.741 0.00 0.00 30.03 1.89
2374 2505 7.589958 ATCGACTCATTCCAGACTAATAACT 57.410 36.000 0.00 0.00 0.00 2.24
2375 2506 8.693120 ATCGACTCATTCCAGACTAATAACTA 57.307 34.615 0.00 0.00 0.00 2.24
2376 2507 8.155821 TCGACTCATTCCAGACTAATAACTAG 57.844 38.462 0.00 0.00 0.00 2.57
2377 2508 7.228906 TCGACTCATTCCAGACTAATAACTAGG 59.771 40.741 0.00 0.00 31.14 3.02
2378 2509 7.228906 CGACTCATTCCAGACTAATAACTAGGA 59.771 40.741 0.00 0.00 31.14 2.94
2379 2510 8.472007 ACTCATTCCAGACTAATAACTAGGAG 57.528 38.462 0.00 0.00 31.14 3.69
2380 2511 7.507616 ACTCATTCCAGACTAATAACTAGGAGG 59.492 40.741 0.00 0.00 31.14 4.30
2381 2512 7.592736 TCATTCCAGACTAATAACTAGGAGGA 58.407 38.462 0.00 0.00 31.14 3.71
2382 2513 7.506261 TCATTCCAGACTAATAACTAGGAGGAC 59.494 40.741 0.00 0.00 30.32 3.85
2383 2514 6.337185 TCCAGACTAATAACTAGGAGGACA 57.663 41.667 0.00 0.00 31.14 4.02
2384 2515 6.923670 TCCAGACTAATAACTAGGAGGACAT 58.076 40.000 0.00 0.00 31.14 3.06
2385 2516 7.005296 TCCAGACTAATAACTAGGAGGACATC 58.995 42.308 0.00 0.00 31.14 3.06
2386 2517 7.007723 CCAGACTAATAACTAGGAGGACATCT 58.992 42.308 0.00 0.00 31.14 2.90
2387 2518 7.175990 CCAGACTAATAACTAGGAGGACATCTC 59.824 44.444 0.00 0.00 41.71 2.75
2397 2528 1.799933 AGGACATCTCCTCCCATGTC 58.200 55.000 3.85 3.85 44.59 3.06
2398 2529 1.008815 AGGACATCTCCTCCCATGTCA 59.991 52.381 12.75 0.00 44.59 3.58
2399 2530 2.611225 GACATCTCCTCCCATGTCAC 57.389 55.000 7.09 0.00 45.64 3.67
2400 2531 2.114616 GACATCTCCTCCCATGTCACT 58.885 52.381 7.09 0.00 45.64 3.41
2401 2532 3.300388 GACATCTCCTCCCATGTCACTA 58.700 50.000 7.09 0.00 45.64 2.74
2402 2533 3.900601 GACATCTCCTCCCATGTCACTAT 59.099 47.826 7.09 0.00 45.64 2.12
2403 2534 3.900601 ACATCTCCTCCCATGTCACTATC 59.099 47.826 0.00 0.00 0.00 2.08
2404 2535 3.981516 TCTCCTCCCATGTCACTATCT 57.018 47.619 0.00 0.00 0.00 1.98
2405 2536 3.838565 TCTCCTCCCATGTCACTATCTC 58.161 50.000 0.00 0.00 0.00 2.75
2406 2537 2.896685 CTCCTCCCATGTCACTATCTCC 59.103 54.545 0.00 0.00 0.00 3.71
2407 2538 1.974236 CCTCCCATGTCACTATCTCCC 59.026 57.143 0.00 0.00 0.00 4.30
2408 2539 2.427002 CCTCCCATGTCACTATCTCCCT 60.427 54.545 0.00 0.00 0.00 4.20
2409 2540 3.312890 CTCCCATGTCACTATCTCCCTT 58.687 50.000 0.00 0.00 0.00 3.95
2410 2541 3.041211 TCCCATGTCACTATCTCCCTTG 58.959 50.000 0.00 0.00 0.00 3.61
2411 2542 3.041211 CCCATGTCACTATCTCCCTTGA 58.959 50.000 0.00 0.00 0.00 3.02
2412 2543 3.649981 CCCATGTCACTATCTCCCTTGAT 59.350 47.826 0.00 0.00 0.00 2.57
2413 2544 4.840680 CCCATGTCACTATCTCCCTTGATA 59.159 45.833 0.00 0.00 0.00 2.15
2414 2545 5.307976 CCCATGTCACTATCTCCCTTGATAA 59.692 44.000 0.00 0.00 0.00 1.75
2415 2546 6.183361 CCCATGTCACTATCTCCCTTGATAAA 60.183 42.308 0.00 0.00 0.00 1.40
2416 2547 7.282585 CCATGTCACTATCTCCCTTGATAAAA 58.717 38.462 0.00 0.00 0.00 1.52
2417 2548 7.941238 CCATGTCACTATCTCCCTTGATAAAAT 59.059 37.037 0.00 0.00 0.00 1.82
2418 2549 8.997323 CATGTCACTATCTCCCTTGATAAAATC 58.003 37.037 0.00 0.00 0.00 2.17
2419 2550 8.089625 TGTCACTATCTCCCTTGATAAAATCA 57.910 34.615 0.00 0.00 37.55 2.57
2420 2551 8.717717 TGTCACTATCTCCCTTGATAAAATCAT 58.282 33.333 0.00 0.00 39.39 2.45
2423 2554 9.160496 CACTATCTCCCTTGATAAAATCATAGC 57.840 37.037 0.00 0.00 39.39 2.97
2424 2555 8.325046 ACTATCTCCCTTGATAAAATCATAGCC 58.675 37.037 0.00 0.00 39.39 3.93
2425 2556 5.551233 TCTCCCTTGATAAAATCATAGCCG 58.449 41.667 0.00 0.00 39.39 5.52
2426 2557 4.072131 TCCCTTGATAAAATCATAGCCGC 58.928 43.478 0.00 0.00 39.39 6.53
2427 2558 3.820467 CCCTTGATAAAATCATAGCCGCA 59.180 43.478 0.00 0.00 39.39 5.69
2428 2559 4.320494 CCCTTGATAAAATCATAGCCGCAC 60.320 45.833 0.00 0.00 39.39 5.34
2429 2560 4.320494 CCTTGATAAAATCATAGCCGCACC 60.320 45.833 0.00 0.00 39.39 5.01
2430 2561 3.814625 TGATAAAATCATAGCCGCACCA 58.185 40.909 0.00 0.00 33.59 4.17
2431 2562 3.563808 TGATAAAATCATAGCCGCACCAC 59.436 43.478 0.00 0.00 33.59 4.16
2432 2563 2.128771 AAAATCATAGCCGCACCACT 57.871 45.000 0.00 0.00 0.00 4.00
2433 2564 1.382522 AAATCATAGCCGCACCACTG 58.617 50.000 0.00 0.00 0.00 3.66
2434 2565 0.253044 AATCATAGCCGCACCACTGT 59.747 50.000 0.00 0.00 0.00 3.55
2435 2566 0.179073 ATCATAGCCGCACCACTGTC 60.179 55.000 0.00 0.00 0.00 3.51
2436 2567 1.815421 CATAGCCGCACCACTGTCC 60.815 63.158 0.00 0.00 0.00 4.02
2437 2568 1.990060 ATAGCCGCACCACTGTCCT 60.990 57.895 0.00 0.00 0.00 3.85
2438 2569 2.244117 ATAGCCGCACCACTGTCCTG 62.244 60.000 0.00 0.00 0.00 3.86
2439 2570 4.626081 GCCGCACCACTGTCCTGT 62.626 66.667 0.00 0.00 0.00 4.00
2440 2571 3.056458 CCGCACCACTGTCCTGTA 58.944 61.111 0.00 0.00 0.00 2.74
2441 2572 1.079819 CCGCACCACTGTCCTGTAG 60.080 63.158 0.00 0.00 0.00 2.74
2442 2573 1.079819 CGCACCACTGTCCTGTAGG 60.080 63.158 0.00 0.00 0.00 3.18
2443 2574 1.376037 GCACCACTGTCCTGTAGGC 60.376 63.158 0.00 0.00 34.44 3.93
2444 2575 1.296715 CACCACTGTCCTGTAGGCC 59.703 63.158 0.00 0.00 34.44 5.19
2445 2576 1.918800 ACCACTGTCCTGTAGGCCC 60.919 63.158 0.00 0.00 34.44 5.80
2446 2577 1.613630 CCACTGTCCTGTAGGCCCT 60.614 63.158 0.00 0.00 34.44 5.19
2447 2578 1.201429 CCACTGTCCTGTAGGCCCTT 61.201 60.000 0.00 0.00 34.44 3.95
2448 2579 1.568504 CACTGTCCTGTAGGCCCTTA 58.431 55.000 0.00 0.00 34.44 2.69
2449 2580 2.119495 CACTGTCCTGTAGGCCCTTAT 58.881 52.381 0.00 0.00 34.44 1.73
2450 2581 3.305720 CACTGTCCTGTAGGCCCTTATA 58.694 50.000 0.00 0.00 34.44 0.98
2451 2582 3.069729 CACTGTCCTGTAGGCCCTTATAC 59.930 52.174 0.00 0.00 34.44 1.47
2452 2583 2.633481 CTGTCCTGTAGGCCCTTATACC 59.367 54.545 0.00 0.00 34.44 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.476085 TGTGGTGTGGCAAACTCTTTG 59.524 47.619 7.91 0.00 43.44 2.77
14 15 1.846007 TGTGGTGTGGCAAACTCTTT 58.154 45.000 7.91 0.00 0.00 2.52
33 34 7.663081 CAGGACAATTTCTATATGGCTGTACAT 59.337 37.037 0.00 0.00 34.90 2.29
40 41 3.507622 GCCCAGGACAATTTCTATATGGC 59.492 47.826 0.00 0.00 0.00 4.40
41 42 4.990526 AGCCCAGGACAATTTCTATATGG 58.009 43.478 0.00 0.00 0.00 2.74
42 43 5.874093 AGAGCCCAGGACAATTTCTATATG 58.126 41.667 0.00 0.00 0.00 1.78
44 45 5.903010 TGTAGAGCCCAGGACAATTTCTATA 59.097 40.000 0.00 0.00 0.00 1.31
49 50 4.227300 TGTATGTAGAGCCCAGGACAATTT 59.773 41.667 0.00 0.00 0.00 1.82
53 54 2.543037 TGTATGTAGAGCCCAGGACA 57.457 50.000 0.00 0.00 0.00 4.02
61 62 6.292061 CGATTTCAGAAGCTTGTATGTAGAGC 60.292 42.308 2.10 0.00 36.68 4.09
62 63 6.292061 GCGATTTCAGAAGCTTGTATGTAGAG 60.292 42.308 2.10 0.00 0.00 2.43
75 76 4.792528 GGAGAGAATGCGATTTCAGAAG 57.207 45.455 0.00 0.00 0.00 2.85
89 90 0.460284 GCTTGAATCCGCGGAGAGAA 60.460 55.000 33.87 22.06 0.00 2.87
91 92 0.740868 TTGCTTGAATCCGCGGAGAG 60.741 55.000 33.87 25.67 0.00 3.20
97 98 6.090129 TGTAAATAAGTTTGCTTGAATCCGC 58.910 36.000 0.00 0.00 36.22 5.54
98 99 8.687824 AATGTAAATAAGTTTGCTTGAATCCG 57.312 30.769 0.00 0.00 36.22 4.18
134 136 1.834188 ACCAAAGGCGGGTGAATAAG 58.166 50.000 0.00 0.00 37.23 1.73
144 146 3.751175 TCTCAACTAATCAACCAAAGGCG 59.249 43.478 0.00 0.00 0.00 5.52
147 149 9.401058 AGGATATTCTCAACTAATCAACCAAAG 57.599 33.333 0.00 0.00 0.00 2.77
169 171 4.760715 GTCATTTCAGATGCAGCATAGGAT 59.239 41.667 8.22 0.39 0.00 3.24
199 201 4.547367 GCCCGGCGTCTAGGCAAT 62.547 66.667 18.08 0.00 46.34 3.56
248 250 4.634004 CGGTTAATGCAGAGTGGTAAATGA 59.366 41.667 0.00 0.00 0.00 2.57
251 253 4.274602 TCGGTTAATGCAGAGTGGTAAA 57.725 40.909 0.00 0.00 0.00 2.01
260 262 1.004610 CGCAGACATCGGTTAATGCAG 60.005 52.381 0.00 0.00 33.46 4.41
276 280 1.429148 GCCGAAATCCTACCACGCAG 61.429 60.000 0.00 0.00 0.00 5.18
280 284 1.022451 TTGCGCCGAAATCCTACCAC 61.022 55.000 4.18 0.00 0.00 4.16
315 319 5.128827 ACGCTCAGGAAAGTAGGATATTTGA 59.871 40.000 0.00 0.00 0.00 2.69
317 321 5.360591 CACGCTCAGGAAAGTAGGATATTT 58.639 41.667 0.00 0.00 0.00 1.40
335 339 2.138596 CACTTTTGCAATTCCACGCT 57.861 45.000 0.00 0.00 0.00 5.07
601 621 7.222161 GGAGTAGACTCTTAAGGAAAACCAAA 58.778 38.462 9.46 0.00 42.48 3.28
604 624 5.484644 AGGGAGTAGACTCTTAAGGAAAACC 59.515 44.000 9.46 0.00 42.48 3.27
605 625 6.014413 ACAGGGAGTAGACTCTTAAGGAAAAC 60.014 42.308 9.46 0.00 42.48 2.43
610 630 4.403113 GGAACAGGGAGTAGACTCTTAAGG 59.597 50.000 9.46 0.00 42.48 2.69
612 632 4.015084 CGGAACAGGGAGTAGACTCTTAA 58.985 47.826 9.46 0.00 42.48 1.85
614 634 2.225066 ACGGAACAGGGAGTAGACTCTT 60.225 50.000 9.46 0.00 42.48 2.85
616 636 1.836802 ACGGAACAGGGAGTAGACTC 58.163 55.000 0.75 0.75 42.14 3.36
661 681 4.407296 ACCAAGGAGTTGAGGCTAGAATAG 59.593 45.833 0.00 0.00 37.55 1.73
662 682 4.362677 ACCAAGGAGTTGAGGCTAGAATA 58.637 43.478 0.00 0.00 35.46 1.75
674 694 0.905337 CCTCCCGAGACCAAGGAGTT 60.905 60.000 4.69 0.00 44.85 3.01
687 707 3.685214 CTGCGACGAACTCCTCCCG 62.685 68.421 0.00 0.00 0.00 5.14
708 728 0.402504 GGGGAGGCTCTCTAGATCGA 59.597 60.000 15.24 0.00 0.00 3.59
746 766 2.726351 GCCGTCAGAGGAAGGGGAG 61.726 68.421 0.00 0.00 42.27 4.30
940 963 3.766545 TCTCTTTTCTTTGATGGTGGGG 58.233 45.455 0.00 0.00 0.00 4.96
1434 1459 0.318699 CTCAGAACTGGAACGCGTCA 60.319 55.000 14.44 6.29 0.00 4.35
1490 1525 6.017605 CAGCAGTAATCATCAACCTTATCCAC 60.018 42.308 0.00 0.00 0.00 4.02
1503 1540 1.022735 GCAGCAGCAGCAGTAATCAT 58.977 50.000 4.63 0.00 45.49 2.45
1515 1557 1.331138 CTAGCATTCTTCAGCAGCAGC 59.669 52.381 0.00 0.00 42.56 5.25
1615 1678 2.398588 TCCACTGGCTAGGACAATAGG 58.601 52.381 0.85 0.00 0.00 2.57
1617 1680 4.532126 CCATATCCACTGGCTAGGACAATA 59.468 45.833 0.85 0.00 36.60 1.90
1618 1681 3.328931 CCATATCCACTGGCTAGGACAAT 59.671 47.826 0.85 0.00 36.60 2.71
1619 1682 2.705658 CCATATCCACTGGCTAGGACAA 59.294 50.000 0.85 0.00 36.60 3.18
1621 1684 2.609747 TCCATATCCACTGGCTAGGAC 58.390 52.381 0.85 0.00 36.60 3.85
1744 1820 8.455682 TGCCAAAGTAACACATAGCTAAATAAC 58.544 33.333 0.00 0.00 0.00 1.89
1773 1853 9.956797 GGTCATTTCATAAAATTCAATCAAACG 57.043 29.630 0.00 0.00 32.69 3.60
1798 1878 2.624838 AGCACTCAACAATCAACTTGGG 59.375 45.455 0.00 0.00 39.30 4.12
1802 1882 6.432162 ACATAATCAGCACTCAACAATCAACT 59.568 34.615 0.00 0.00 0.00 3.16
1838 1918 5.922960 TGGCAAAAGGGGTATATCATACT 57.077 39.130 0.00 0.00 0.00 2.12
1864 1988 8.410673 TCAGATACAATCTCTGGGTAATCTAC 57.589 38.462 0.87 0.00 40.44 2.59
1873 1997 9.775854 ATTGATACTTTCAGATACAATCTCTGG 57.224 33.333 0.87 0.00 40.44 3.86
1876 2000 9.049523 TGCATTGATACTTTCAGATACAATCTC 57.950 33.333 0.00 0.00 37.58 2.75
1892 2018 5.065218 CAGGTACAAAGGAGTGCATTGATAC 59.935 44.000 6.61 5.50 0.00 2.24
1910 2036 6.992715 AGGTTCAAAGCACATATATCAGGTAC 59.007 38.462 0.00 0.00 0.00 3.34
1916 2042 6.925610 TCACAGGTTCAAAGCACATATATC 57.074 37.500 0.00 0.00 0.00 1.63
1928 2054 0.684535 TCCGCTCATCACAGGTTCAA 59.315 50.000 0.00 0.00 0.00 2.69
1943 2069 1.807142 GGCCTTATAGCAATTCTCCGC 59.193 52.381 0.00 0.00 0.00 5.54
1957 2083 0.750850 GCGTCTCCACTATGGCCTTA 59.249 55.000 3.32 0.02 37.47 2.69
1994 2120 5.079689 TCATCAAAAGTATCCGTACAGCA 57.920 39.130 0.00 0.00 33.09 4.41
1995 2121 6.417191 TTTCATCAAAAGTATCCGTACAGC 57.583 37.500 0.00 0.00 33.09 4.40
2030 2156 5.922544 ACGCAAATTTCCAAGAAAAGATCAG 59.077 36.000 0.00 0.00 0.00 2.90
2033 2159 6.279882 TCAACGCAAATTTCCAAGAAAAGAT 58.720 32.000 0.00 0.00 0.00 2.40
2034 2160 5.655488 TCAACGCAAATTTCCAAGAAAAGA 58.345 33.333 0.00 0.00 0.00 2.52
2037 2163 5.814705 ACAATCAACGCAAATTTCCAAGAAA 59.185 32.000 0.00 0.00 0.00 2.52
2038 2164 5.233902 CACAATCAACGCAAATTTCCAAGAA 59.766 36.000 0.00 0.00 0.00 2.52
2040 2166 4.744137 TCACAATCAACGCAAATTTCCAAG 59.256 37.500 0.00 0.00 0.00 3.61
2043 2169 5.844301 AATCACAATCAACGCAAATTTCC 57.156 34.783 0.00 0.00 0.00 3.13
2044 2170 6.308766 AGCTAATCACAATCAACGCAAATTTC 59.691 34.615 0.00 0.00 0.00 2.17
2056 2187 8.721478 TGTTCTAAACAGAAGCTAATCACAATC 58.279 33.333 0.00 0.00 36.25 2.67
2066 2197 2.802816 CTGCGTGTTCTAAACAGAAGCT 59.197 45.455 12.69 0.00 43.10 3.74
2071 2202 4.904116 TGAAAACTGCGTGTTCTAAACAG 58.096 39.130 11.23 0.00 43.10 3.16
2104 2235 9.740710 GCCTTAATGGACCAATCTAATACTAAT 57.259 33.333 0.00 0.00 38.35 1.73
2105 2236 7.876068 CGCCTTAATGGACCAATCTAATACTAA 59.124 37.037 0.00 0.00 38.35 2.24
2106 2237 7.015877 ACGCCTTAATGGACCAATCTAATACTA 59.984 37.037 0.00 0.00 38.35 1.82
2107 2238 6.183361 ACGCCTTAATGGACCAATCTAATACT 60.183 38.462 0.00 0.00 38.35 2.12
2108 2239 5.995897 ACGCCTTAATGGACCAATCTAATAC 59.004 40.000 0.00 0.00 38.35 1.89
2109 2240 6.182507 ACGCCTTAATGGACCAATCTAATA 57.817 37.500 0.00 0.00 38.35 0.98
2110 2241 5.048846 ACGCCTTAATGGACCAATCTAAT 57.951 39.130 0.00 0.00 38.35 1.73
2111 2242 4.080807 TGACGCCTTAATGGACCAATCTAA 60.081 41.667 0.00 0.00 38.35 2.10
2112 2243 3.452990 TGACGCCTTAATGGACCAATCTA 59.547 43.478 0.00 0.00 38.35 1.98
2113 2244 2.238646 TGACGCCTTAATGGACCAATCT 59.761 45.455 0.00 0.00 38.35 2.40
2114 2245 2.639065 TGACGCCTTAATGGACCAATC 58.361 47.619 0.00 0.00 38.35 2.67
2115 2246 2.799126 TGACGCCTTAATGGACCAAT 57.201 45.000 0.00 0.00 38.35 3.16
2116 2247 2.432444 CTTGACGCCTTAATGGACCAA 58.568 47.619 0.00 0.00 38.35 3.67
2117 2248 1.948611 GCTTGACGCCTTAATGGACCA 60.949 52.381 0.00 0.00 38.35 4.02
2118 2249 0.733150 GCTTGACGCCTTAATGGACC 59.267 55.000 0.00 0.00 38.35 4.46
2119 2250 1.739067 AGCTTGACGCCTTAATGGAC 58.261 50.000 0.00 0.00 40.39 4.02
2120 2251 2.027192 AGAAGCTTGACGCCTTAATGGA 60.027 45.455 2.10 0.00 40.39 3.41
2121 2252 2.359900 AGAAGCTTGACGCCTTAATGG 58.640 47.619 2.10 0.00 40.39 3.16
2122 2253 4.184629 ACTAGAAGCTTGACGCCTTAATG 58.815 43.478 2.10 0.00 40.39 1.90
2123 2254 4.473477 ACTAGAAGCTTGACGCCTTAAT 57.527 40.909 2.10 0.00 40.39 1.40
2124 2255 3.955650 ACTAGAAGCTTGACGCCTTAA 57.044 42.857 2.10 0.00 40.39 1.85
2125 2256 3.955650 AACTAGAAGCTTGACGCCTTA 57.044 42.857 2.10 0.00 40.39 2.69
2126 2257 2.808543 CAAACTAGAAGCTTGACGCCTT 59.191 45.455 2.10 0.00 40.39 4.35
2127 2258 2.417719 CAAACTAGAAGCTTGACGCCT 58.582 47.619 2.10 0.00 40.39 5.52
2128 2259 1.135944 GCAAACTAGAAGCTTGACGCC 60.136 52.381 2.10 0.00 40.39 5.68
2129 2260 1.801178 AGCAAACTAGAAGCTTGACGC 59.199 47.619 2.10 0.00 34.37 5.19
2135 2266 7.283354 ACTTTGTTAAGAAGCAAACTAGAAGCT 59.717 33.333 0.00 0.00 36.10 3.74
2136 2267 7.377131 CACTTTGTTAAGAAGCAAACTAGAAGC 59.623 37.037 0.00 0.00 35.30 3.86
2137 2268 8.612619 TCACTTTGTTAAGAAGCAAACTAGAAG 58.387 33.333 0.00 0.00 35.30 2.85
2138 2269 8.500753 TCACTTTGTTAAGAAGCAAACTAGAA 57.499 30.769 0.00 0.00 35.30 2.10
2139 2270 7.769044 ACTCACTTTGTTAAGAAGCAAACTAGA 59.231 33.333 0.00 0.00 35.30 2.43
2140 2271 7.920738 ACTCACTTTGTTAAGAAGCAAACTAG 58.079 34.615 0.00 0.00 35.30 2.57
2141 2272 7.254319 CGACTCACTTTGTTAAGAAGCAAACTA 60.254 37.037 0.00 0.00 35.30 2.24
2142 2273 6.456988 CGACTCACTTTGTTAAGAAGCAAACT 60.457 38.462 0.00 0.00 35.30 2.66
2143 2274 5.677178 CGACTCACTTTGTTAAGAAGCAAAC 59.323 40.000 0.00 0.00 35.30 2.93
2144 2275 5.583061 TCGACTCACTTTGTTAAGAAGCAAA 59.417 36.000 0.00 0.00 35.30 3.68
2145 2276 5.113383 TCGACTCACTTTGTTAAGAAGCAA 58.887 37.500 0.00 0.00 35.30 3.91
2146 2277 4.689071 TCGACTCACTTTGTTAAGAAGCA 58.311 39.130 0.00 0.00 35.30 3.91
2147 2278 5.405571 TGATCGACTCACTTTGTTAAGAAGC 59.594 40.000 0.00 0.00 35.30 3.86
2148 2279 7.588143 ATGATCGACTCACTTTGTTAAGAAG 57.412 36.000 0.00 0.00 36.48 2.85
2149 2280 7.095229 CCAATGATCGACTCACTTTGTTAAGAA 60.095 37.037 0.00 0.00 36.48 2.52
2150 2281 6.368791 CCAATGATCGACTCACTTTGTTAAGA 59.631 38.462 0.00 0.00 36.48 2.10
2151 2282 6.147821 ACCAATGATCGACTCACTTTGTTAAG 59.852 38.462 0.00 0.00 36.48 1.85
2152 2283 5.995282 ACCAATGATCGACTCACTTTGTTAA 59.005 36.000 0.00 0.00 36.48 2.01
2153 2284 5.547465 ACCAATGATCGACTCACTTTGTTA 58.453 37.500 0.00 0.00 36.48 2.41
2154 2285 4.389374 ACCAATGATCGACTCACTTTGTT 58.611 39.130 0.00 0.00 36.48 2.83
2155 2286 4.008074 ACCAATGATCGACTCACTTTGT 57.992 40.909 0.00 0.00 36.48 2.83
2156 2287 5.362556 AAACCAATGATCGACTCACTTTG 57.637 39.130 0.00 0.00 36.48 2.77
2157 2288 6.348540 GCTAAAACCAATGATCGACTCACTTT 60.349 38.462 0.00 0.00 36.48 2.66
2158 2289 5.122396 GCTAAAACCAATGATCGACTCACTT 59.878 40.000 0.00 0.00 36.48 3.16
2159 2290 4.631813 GCTAAAACCAATGATCGACTCACT 59.368 41.667 0.00 0.00 36.48 3.41
2160 2291 4.631813 AGCTAAAACCAATGATCGACTCAC 59.368 41.667 0.00 0.00 36.48 3.51
2161 2292 4.832248 AGCTAAAACCAATGATCGACTCA 58.168 39.130 0.00 0.00 38.53 3.41
2162 2293 4.026475 CGAGCTAAAACCAATGATCGACTC 60.026 45.833 0.00 0.00 40.16 3.36
2163 2294 3.865745 CGAGCTAAAACCAATGATCGACT 59.134 43.478 0.00 0.00 40.16 4.18
2164 2295 3.617263 ACGAGCTAAAACCAATGATCGAC 59.383 43.478 6.49 0.00 40.16 4.20
2165 2296 3.857052 ACGAGCTAAAACCAATGATCGA 58.143 40.909 6.49 0.00 40.16 3.59
2166 2297 4.600012 AACGAGCTAAAACCAATGATCG 57.400 40.909 0.00 0.00 42.81 3.69
2167 2298 7.527457 AGTTTAACGAGCTAAAACCAATGATC 58.473 34.615 8.87 0.00 34.39 2.92
2168 2299 7.448748 AGTTTAACGAGCTAAAACCAATGAT 57.551 32.000 8.87 0.00 34.39 2.45
2169 2300 6.870971 AGTTTAACGAGCTAAAACCAATGA 57.129 33.333 8.87 0.00 34.39 2.57
2170 2301 9.620660 ATTAAGTTTAACGAGCTAAAACCAATG 57.379 29.630 8.87 0.00 34.39 2.82
2171 2302 9.620660 CATTAAGTTTAACGAGCTAAAACCAAT 57.379 29.630 8.87 7.13 34.39 3.16
2172 2303 8.838365 TCATTAAGTTTAACGAGCTAAAACCAA 58.162 29.630 8.87 5.70 34.39 3.67
2173 2304 8.380743 TCATTAAGTTTAACGAGCTAAAACCA 57.619 30.769 8.87 0.00 34.39 3.67
2174 2305 8.876248 CTCATTAAGTTTAACGAGCTAAAACC 57.124 34.615 8.87 0.00 34.39 3.27
2182 2313 7.829378 AGGTAAGCTCATTAAGTTTAACGAG 57.171 36.000 3.94 3.94 41.74 4.18
2183 2314 9.143631 GTTAGGTAAGCTCATTAAGTTTAACGA 57.856 33.333 0.00 0.00 41.74 3.85
2184 2315 8.928733 TGTTAGGTAAGCTCATTAAGTTTAACG 58.071 33.333 0.00 0.00 41.74 3.18
2187 2318 8.943002 GCTTGTTAGGTAAGCTCATTAAGTTTA 58.057 33.333 0.00 0.00 45.34 2.01
2188 2319 7.817641 GCTTGTTAGGTAAGCTCATTAAGTTT 58.182 34.615 0.00 0.00 45.34 2.66
2189 2320 7.379098 GCTTGTTAGGTAAGCTCATTAAGTT 57.621 36.000 0.00 0.00 45.34 2.66
2190 2321 6.986904 GCTTGTTAGGTAAGCTCATTAAGT 57.013 37.500 0.00 0.00 45.34 2.24
2200 2331 5.220605 GCAATTCGGTAGCTTGTTAGGTAAG 60.221 44.000 0.00 0.00 36.21 2.34
2201 2332 4.632688 GCAATTCGGTAGCTTGTTAGGTAA 59.367 41.667 0.00 0.00 36.21 2.85
2202 2333 4.186159 GCAATTCGGTAGCTTGTTAGGTA 58.814 43.478 0.00 0.00 33.36 3.08
2203 2334 3.007635 GCAATTCGGTAGCTTGTTAGGT 58.992 45.455 0.00 0.00 35.90 3.08
2204 2335 3.006940 TGCAATTCGGTAGCTTGTTAGG 58.993 45.455 0.00 0.00 0.00 2.69
2205 2336 3.483574 CGTGCAATTCGGTAGCTTGTTAG 60.484 47.826 0.00 0.00 0.00 2.34
2206 2337 2.413796 CGTGCAATTCGGTAGCTTGTTA 59.586 45.455 0.00 0.00 0.00 2.41
2207 2338 1.196808 CGTGCAATTCGGTAGCTTGTT 59.803 47.619 0.00 0.00 0.00 2.83
2208 2339 0.796312 CGTGCAATTCGGTAGCTTGT 59.204 50.000 0.00 0.00 0.00 3.16
2209 2340 1.075542 TCGTGCAATTCGGTAGCTTG 58.924 50.000 0.00 0.00 0.00 4.01
2210 2341 1.076332 GTCGTGCAATTCGGTAGCTT 58.924 50.000 0.00 0.00 0.00 3.74
2211 2342 0.739813 GGTCGTGCAATTCGGTAGCT 60.740 55.000 0.00 0.00 0.00 3.32
2212 2343 1.017177 TGGTCGTGCAATTCGGTAGC 61.017 55.000 0.00 0.00 0.00 3.58
2213 2344 1.434555 TTGGTCGTGCAATTCGGTAG 58.565 50.000 0.00 0.00 0.00 3.18
2214 2345 1.880271 TTTGGTCGTGCAATTCGGTA 58.120 45.000 0.00 0.00 0.00 4.02
2215 2346 1.243902 ATTTGGTCGTGCAATTCGGT 58.756 45.000 0.00 0.00 0.00 4.69
2216 2347 2.346099 AATTTGGTCGTGCAATTCGG 57.654 45.000 0.00 0.00 0.00 4.30
2217 2348 5.665217 GCTTAAAATTTGGTCGTGCAATTCG 60.665 40.000 0.00 0.00 0.00 3.34
2218 2349 5.389411 GGCTTAAAATTTGGTCGTGCAATTC 60.389 40.000 0.00 0.00 0.00 2.17
2219 2350 4.450757 GGCTTAAAATTTGGTCGTGCAATT 59.549 37.500 0.00 0.00 0.00 2.32
2220 2351 3.993736 GGCTTAAAATTTGGTCGTGCAAT 59.006 39.130 0.00 0.00 0.00 3.56
2221 2352 3.385577 GGCTTAAAATTTGGTCGTGCAA 58.614 40.909 0.00 0.00 0.00 4.08
2222 2353 2.288518 GGGCTTAAAATTTGGTCGTGCA 60.289 45.455 0.00 0.00 0.00 4.57
2223 2354 2.333926 GGGCTTAAAATTTGGTCGTGC 58.666 47.619 0.00 0.00 0.00 5.34
2224 2355 2.560981 AGGGGCTTAAAATTTGGTCGTG 59.439 45.455 0.00 0.00 0.00 4.35
2225 2356 2.884320 AGGGGCTTAAAATTTGGTCGT 58.116 42.857 0.00 0.00 0.00 4.34
2226 2357 5.592104 ATTAGGGGCTTAAAATTTGGTCG 57.408 39.130 0.00 0.00 0.00 4.79
2227 2358 7.412853 TGTATTAGGGGCTTAAAATTTGGTC 57.587 36.000 0.00 0.00 0.00 4.02
2228 2359 7.235812 TGTTGTATTAGGGGCTTAAAATTTGGT 59.764 33.333 0.00 0.00 0.00 3.67
2229 2360 7.547722 GTGTTGTATTAGGGGCTTAAAATTTGG 59.452 37.037 0.00 0.00 0.00 3.28
2230 2361 8.091449 TGTGTTGTATTAGGGGCTTAAAATTTG 58.909 33.333 0.00 0.00 0.00 2.32
2231 2362 8.196378 TGTGTTGTATTAGGGGCTTAAAATTT 57.804 30.769 0.00 0.00 0.00 1.82
2232 2363 7.784470 TGTGTTGTATTAGGGGCTTAAAATT 57.216 32.000 0.00 0.00 0.00 1.82
2233 2364 7.233757 TGTTGTGTTGTATTAGGGGCTTAAAAT 59.766 33.333 0.00 0.00 0.00 1.82
2234 2365 6.550108 TGTTGTGTTGTATTAGGGGCTTAAAA 59.450 34.615 0.00 0.00 0.00 1.52
2235 2366 6.016108 GTGTTGTGTTGTATTAGGGGCTTAAA 60.016 38.462 0.00 0.00 0.00 1.52
2236 2367 5.474189 GTGTTGTGTTGTATTAGGGGCTTAA 59.526 40.000 0.00 0.00 0.00 1.85
2237 2368 5.005094 GTGTTGTGTTGTATTAGGGGCTTA 58.995 41.667 0.00 0.00 0.00 3.09
2238 2369 3.824443 GTGTTGTGTTGTATTAGGGGCTT 59.176 43.478 0.00 0.00 0.00 4.35
2239 2370 3.181438 TGTGTTGTGTTGTATTAGGGGCT 60.181 43.478 0.00 0.00 0.00 5.19
2240 2371 3.057806 GTGTGTTGTGTTGTATTAGGGGC 60.058 47.826 0.00 0.00 0.00 5.80
2241 2372 4.394729 AGTGTGTTGTGTTGTATTAGGGG 58.605 43.478 0.00 0.00 0.00 4.79
2242 2373 5.298276 ACAAGTGTGTTGTGTTGTATTAGGG 59.702 40.000 0.00 0.00 32.58 3.53
2243 2374 6.371809 ACAAGTGTGTTGTGTTGTATTAGG 57.628 37.500 0.00 0.00 32.58 2.69
2257 2388 4.910458 ATTAGGAGCCTAACAAGTGTGT 57.090 40.909 10.98 0.00 40.76 3.72
2258 2389 5.730550 TGTATTAGGAGCCTAACAAGTGTG 58.269 41.667 10.98 0.00 40.76 3.82
2259 2390 5.627040 GCTGTATTAGGAGCCTAACAAGTGT 60.627 44.000 10.98 0.00 40.76 3.55
2260 2391 4.811557 GCTGTATTAGGAGCCTAACAAGTG 59.188 45.833 10.98 3.33 40.76 3.16
2261 2392 4.469945 TGCTGTATTAGGAGCCTAACAAGT 59.530 41.667 10.98 0.00 40.76 3.16
2262 2393 4.811557 GTGCTGTATTAGGAGCCTAACAAG 59.188 45.833 10.98 9.78 40.76 3.16
2263 2394 4.224147 TGTGCTGTATTAGGAGCCTAACAA 59.776 41.667 10.98 0.76 40.76 2.83
2264 2395 3.772572 TGTGCTGTATTAGGAGCCTAACA 59.227 43.478 10.98 6.10 40.76 2.41
2265 2396 4.402056 TGTGCTGTATTAGGAGCCTAAC 57.598 45.455 10.98 1.73 40.76 2.34
2266 2397 5.368145 CATTGTGCTGTATTAGGAGCCTAA 58.632 41.667 11.14 11.14 41.95 2.69
2267 2398 4.743651 GCATTGTGCTGTATTAGGAGCCTA 60.744 45.833 0.00 0.00 40.96 3.93
2268 2399 3.813443 CATTGTGCTGTATTAGGAGCCT 58.187 45.455 0.00 0.00 34.04 4.58
2269 2400 2.291741 GCATTGTGCTGTATTAGGAGCC 59.708 50.000 0.00 0.00 40.96 4.70
2270 2401 2.945008 TGCATTGTGCTGTATTAGGAGC 59.055 45.455 3.41 0.00 45.31 4.70
2271 2402 7.444629 AATATGCATTGTGCTGTATTAGGAG 57.555 36.000 3.54 0.00 45.31 3.69
2272 2403 7.822161 AAATATGCATTGTGCTGTATTAGGA 57.178 32.000 3.54 0.00 45.31 2.94
2273 2404 8.876275 AAAAATATGCATTGTGCTGTATTAGG 57.124 30.769 3.54 0.00 45.31 2.69
2299 2430 9.562583 GCCATTAAACGTTGTCATTTAAGATAA 57.437 29.630 0.00 0.00 34.62 1.75
2300 2431 8.731605 TGCCATTAAACGTTGTCATTTAAGATA 58.268 29.630 0.00 0.00 34.62 1.98
2301 2432 7.598278 TGCCATTAAACGTTGTCATTTAAGAT 58.402 30.769 0.00 0.00 34.62 2.40
2302 2433 6.971602 TGCCATTAAACGTTGTCATTTAAGA 58.028 32.000 0.00 0.00 34.62 2.10
2303 2434 7.754924 AGATGCCATTAAACGTTGTCATTTAAG 59.245 33.333 0.00 0.00 34.62 1.85
2304 2435 7.598278 AGATGCCATTAAACGTTGTCATTTAA 58.402 30.769 0.00 0.00 35.38 1.52
2305 2436 7.151999 AGATGCCATTAAACGTTGTCATTTA 57.848 32.000 0.00 0.00 0.00 1.40
2306 2437 6.024552 AGATGCCATTAAACGTTGTCATTT 57.975 33.333 0.00 0.00 0.00 2.32
2307 2438 5.640732 GAGATGCCATTAAACGTTGTCATT 58.359 37.500 0.00 0.00 0.00 2.57
2308 2439 4.201812 CGAGATGCCATTAAACGTTGTCAT 60.202 41.667 0.00 0.00 0.00 3.06
2309 2440 3.124466 CGAGATGCCATTAAACGTTGTCA 59.876 43.478 0.00 0.00 0.00 3.58
2310 2441 3.485216 CCGAGATGCCATTAAACGTTGTC 60.485 47.826 0.00 0.00 0.00 3.18
2311 2442 2.418628 CCGAGATGCCATTAAACGTTGT 59.581 45.455 0.00 0.00 0.00 3.32
2312 2443 2.223249 CCCGAGATGCCATTAAACGTTG 60.223 50.000 0.00 0.00 0.00 4.10
2313 2444 2.014128 CCCGAGATGCCATTAAACGTT 58.986 47.619 0.00 0.00 0.00 3.99
2314 2445 1.663695 CCCGAGATGCCATTAAACGT 58.336 50.000 0.00 0.00 0.00 3.99
2315 2446 0.307760 GCCCGAGATGCCATTAAACG 59.692 55.000 0.00 0.00 0.00 3.60
2316 2447 1.680338 AGCCCGAGATGCCATTAAAC 58.320 50.000 0.00 0.00 0.00 2.01
2317 2448 2.435372 AAGCCCGAGATGCCATTAAA 57.565 45.000 0.00 0.00 0.00 1.52
2318 2449 2.092429 AGAAAGCCCGAGATGCCATTAA 60.092 45.455 0.00 0.00 0.00 1.40
2319 2450 1.490490 AGAAAGCCCGAGATGCCATTA 59.510 47.619 0.00 0.00 0.00 1.90
2320 2451 0.257039 AGAAAGCCCGAGATGCCATT 59.743 50.000 0.00 0.00 0.00 3.16
2321 2452 1.131638 TAGAAAGCCCGAGATGCCAT 58.868 50.000 0.00 0.00 0.00 4.40
2322 2453 1.131638 ATAGAAAGCCCGAGATGCCA 58.868 50.000 0.00 0.00 0.00 4.92
2323 2454 2.147150 GAATAGAAAGCCCGAGATGCC 58.853 52.381 0.00 0.00 0.00 4.40
2324 2455 2.147150 GGAATAGAAAGCCCGAGATGC 58.853 52.381 0.00 0.00 0.00 3.91
2325 2456 3.475566 TGGAATAGAAAGCCCGAGATG 57.524 47.619 0.00 0.00 0.00 2.90
2326 2457 3.306364 CGATGGAATAGAAAGCCCGAGAT 60.306 47.826 0.00 0.00 0.00 2.75
2327 2458 2.035961 CGATGGAATAGAAAGCCCGAGA 59.964 50.000 0.00 0.00 0.00 4.04
2328 2459 2.035961 TCGATGGAATAGAAAGCCCGAG 59.964 50.000 0.00 0.00 0.00 4.63
2329 2460 2.036387 TCGATGGAATAGAAAGCCCGA 58.964 47.619 0.00 0.00 0.00 5.14
2330 2461 2.526304 TCGATGGAATAGAAAGCCCG 57.474 50.000 0.00 0.00 0.00 6.13
2331 2462 3.433615 CGATTCGATGGAATAGAAAGCCC 59.566 47.826 2.61 0.00 41.25 5.19
2332 2463 4.150804 GTCGATTCGATGGAATAGAAAGCC 59.849 45.833 12.54 0.51 43.10 4.35
2333 2464 4.985409 AGTCGATTCGATGGAATAGAAAGC 59.015 41.667 12.54 3.96 43.10 3.51
2334 2465 6.209361 TGAGTCGATTCGATGGAATAGAAAG 58.791 40.000 12.54 0.65 43.10 2.62
2335 2466 6.144078 TGAGTCGATTCGATGGAATAGAAA 57.856 37.500 12.54 2.54 43.10 2.52
2336 2467 5.767816 TGAGTCGATTCGATGGAATAGAA 57.232 39.130 12.54 0.00 43.10 2.10
2337 2468 5.966742 ATGAGTCGATTCGATGGAATAGA 57.033 39.130 12.54 8.77 42.86 1.98
2338 2469 5.574830 GGAATGAGTCGATTCGATGGAATAG 59.425 44.000 12.54 3.67 42.86 1.73
2339 2470 5.010617 TGGAATGAGTCGATTCGATGGAATA 59.989 40.000 12.54 0.00 42.86 1.75
2340 2471 4.202253 TGGAATGAGTCGATTCGATGGAAT 60.202 41.667 12.54 2.18 45.43 3.01
2341 2472 3.132111 TGGAATGAGTCGATTCGATGGAA 59.868 43.478 12.54 0.00 38.42 3.53
2342 2473 2.693074 TGGAATGAGTCGATTCGATGGA 59.307 45.455 12.54 0.00 38.42 3.41
2343 2474 3.055591 CTGGAATGAGTCGATTCGATGG 58.944 50.000 12.54 0.00 38.42 3.51
2344 2475 3.733224 GTCTGGAATGAGTCGATTCGATG 59.267 47.826 12.54 0.00 38.42 3.84
2345 2476 3.634448 AGTCTGGAATGAGTCGATTCGAT 59.366 43.478 12.54 1.51 38.42 3.59
2346 2477 3.017442 AGTCTGGAATGAGTCGATTCGA 58.983 45.455 4.29 4.29 33.75 3.71
2347 2478 3.428746 AGTCTGGAATGAGTCGATTCG 57.571 47.619 3.30 0.00 33.75 3.34
2348 2479 8.138712 AGTTATTAGTCTGGAATGAGTCGATTC 58.861 37.037 0.13 0.13 0.00 2.52
2349 2480 8.012957 AGTTATTAGTCTGGAATGAGTCGATT 57.987 34.615 0.00 0.00 0.00 3.34
2350 2481 7.589958 AGTTATTAGTCTGGAATGAGTCGAT 57.410 36.000 0.00 0.00 0.00 3.59
2351 2482 7.228906 CCTAGTTATTAGTCTGGAATGAGTCGA 59.771 40.741 0.00 0.00 0.00 4.20
2352 2483 7.228906 TCCTAGTTATTAGTCTGGAATGAGTCG 59.771 40.741 0.00 0.00 0.00 4.18
2353 2484 8.466617 TCCTAGTTATTAGTCTGGAATGAGTC 57.533 38.462 0.00 0.00 0.00 3.36
2354 2485 7.507616 CCTCCTAGTTATTAGTCTGGAATGAGT 59.492 40.741 0.00 0.00 0.00 3.41
2355 2486 7.726291 TCCTCCTAGTTATTAGTCTGGAATGAG 59.274 40.741 0.00 0.00 0.00 2.90
2356 2487 7.506261 GTCCTCCTAGTTATTAGTCTGGAATGA 59.494 40.741 0.00 0.00 0.00 2.57
2357 2488 7.287927 TGTCCTCCTAGTTATTAGTCTGGAATG 59.712 40.741 0.00 0.00 0.00 2.67
2358 2489 7.363031 TGTCCTCCTAGTTATTAGTCTGGAAT 58.637 38.462 0.00 0.00 0.00 3.01
2359 2490 6.738635 TGTCCTCCTAGTTATTAGTCTGGAA 58.261 40.000 0.00 0.00 0.00 3.53
2360 2491 6.337185 TGTCCTCCTAGTTATTAGTCTGGA 57.663 41.667 0.00 0.00 0.00 3.86
2361 2492 7.007723 AGATGTCCTCCTAGTTATTAGTCTGG 58.992 42.308 0.00 0.00 0.00 3.86
2362 2493 8.106247 GAGATGTCCTCCTAGTTATTAGTCTG 57.894 42.308 0.00 0.00 35.87 3.51
2379 2510 1.139853 GTGACATGGGAGGAGATGTCC 59.860 57.143 0.00 0.00 45.33 4.02
2380 2511 2.114616 AGTGACATGGGAGGAGATGTC 58.885 52.381 0.00 0.00 45.87 3.06
2381 2512 2.260639 AGTGACATGGGAGGAGATGT 57.739 50.000 0.00 0.00 35.46 3.06
2382 2513 4.158786 AGATAGTGACATGGGAGGAGATG 58.841 47.826 0.00 0.00 0.00 2.90
2383 2514 4.415596 GAGATAGTGACATGGGAGGAGAT 58.584 47.826 0.00 0.00 0.00 2.75
2384 2515 3.437198 GGAGATAGTGACATGGGAGGAGA 60.437 52.174 0.00 0.00 0.00 3.71
2385 2516 2.896685 GGAGATAGTGACATGGGAGGAG 59.103 54.545 0.00 0.00 0.00 3.69
2386 2517 2.426414 GGGAGATAGTGACATGGGAGGA 60.426 54.545 0.00 0.00 0.00 3.71
2387 2518 1.974236 GGGAGATAGTGACATGGGAGG 59.026 57.143 0.00 0.00 0.00 4.30
2388 2519 2.969628 AGGGAGATAGTGACATGGGAG 58.030 52.381 0.00 0.00 0.00 4.30
2389 2520 3.041211 CAAGGGAGATAGTGACATGGGA 58.959 50.000 0.00 0.00 0.00 4.37
2390 2521 3.041211 TCAAGGGAGATAGTGACATGGG 58.959 50.000 0.00 0.00 0.00 4.00
2391 2522 4.970860 ATCAAGGGAGATAGTGACATGG 57.029 45.455 0.00 0.00 0.00 3.66
2392 2523 8.915057 ATTTTATCAAGGGAGATAGTGACATG 57.085 34.615 0.00 0.00 32.48 3.21
2393 2524 8.717717 TGATTTTATCAAGGGAGATAGTGACAT 58.282 33.333 0.00 0.00 36.11 3.06
2394 2525 8.089625 TGATTTTATCAAGGGAGATAGTGACA 57.910 34.615 0.00 0.00 36.11 3.58
2397 2528 9.160496 GCTATGATTTTATCAAGGGAGATAGTG 57.840 37.037 0.00 0.00 43.50 2.74
2398 2529 8.325046 GGCTATGATTTTATCAAGGGAGATAGT 58.675 37.037 0.00 0.00 43.50 2.12
2399 2530 7.493971 CGGCTATGATTTTATCAAGGGAGATAG 59.506 40.741 0.00 0.00 43.50 2.08
2400 2531 7.331026 CGGCTATGATTTTATCAAGGGAGATA 58.669 38.462 0.00 0.00 43.50 1.98
2401 2532 6.176183 CGGCTATGATTTTATCAAGGGAGAT 58.824 40.000 0.00 0.00 43.50 2.75
2402 2533 5.551233 CGGCTATGATTTTATCAAGGGAGA 58.449 41.667 0.00 0.00 43.50 3.71
2403 2534 4.154918 GCGGCTATGATTTTATCAAGGGAG 59.845 45.833 0.00 0.00 43.50 4.30
2404 2535 4.072131 GCGGCTATGATTTTATCAAGGGA 58.928 43.478 0.00 0.00 43.50 4.20
2405 2536 3.820467 TGCGGCTATGATTTTATCAAGGG 59.180 43.478 0.00 0.00 43.50 3.95
2406 2537 4.320494 GGTGCGGCTATGATTTTATCAAGG 60.320 45.833 0.00 0.00 43.50 3.61
2407 2538 4.275689 TGGTGCGGCTATGATTTTATCAAG 59.724 41.667 0.00 0.00 43.50 3.02
2408 2539 4.036262 GTGGTGCGGCTATGATTTTATCAA 59.964 41.667 0.00 0.00 43.50 2.57
2409 2540 3.563808 GTGGTGCGGCTATGATTTTATCA 59.436 43.478 0.00 0.00 44.55 2.15
2410 2541 3.815401 AGTGGTGCGGCTATGATTTTATC 59.185 43.478 0.00 0.00 0.00 1.75
2411 2542 3.565482 CAGTGGTGCGGCTATGATTTTAT 59.435 43.478 0.00 0.00 0.00 1.40
2412 2543 2.942376 CAGTGGTGCGGCTATGATTTTA 59.058 45.455 0.00 0.00 0.00 1.52
2413 2544 1.745087 CAGTGGTGCGGCTATGATTTT 59.255 47.619 0.00 0.00 0.00 1.82
2414 2545 1.340017 ACAGTGGTGCGGCTATGATTT 60.340 47.619 0.00 0.00 0.00 2.17
2415 2546 0.253044 ACAGTGGTGCGGCTATGATT 59.747 50.000 0.00 0.00 0.00 2.57
2416 2547 0.179073 GACAGTGGTGCGGCTATGAT 60.179 55.000 0.00 0.00 0.00 2.45
2417 2548 1.218047 GACAGTGGTGCGGCTATGA 59.782 57.895 0.00 0.00 0.00 2.15
2418 2549 1.815421 GGACAGTGGTGCGGCTATG 60.815 63.158 0.00 0.00 0.00 2.23
2419 2550 1.990060 AGGACAGTGGTGCGGCTAT 60.990 57.895 0.00 0.00 40.77 2.97
2420 2551 2.603473 AGGACAGTGGTGCGGCTA 60.603 61.111 0.00 0.00 40.77 3.93
2421 2552 4.320456 CAGGACAGTGGTGCGGCT 62.320 66.667 0.00 0.00 40.77 5.52
2422 2553 3.234630 TACAGGACAGTGGTGCGGC 62.235 63.158 0.00 0.00 40.77 6.53
2423 2554 1.079819 CTACAGGACAGTGGTGCGG 60.080 63.158 0.00 0.00 40.77 5.69
2424 2555 1.079819 CCTACAGGACAGTGGTGCG 60.080 63.158 0.00 0.00 40.77 5.34
2425 2556 1.376037 GCCTACAGGACAGTGGTGC 60.376 63.158 0.00 0.00 37.39 5.01
2426 2557 1.296715 GGCCTACAGGACAGTGGTG 59.703 63.158 0.00 0.00 44.76 4.17
2427 2558 3.807368 GGCCTACAGGACAGTGGT 58.193 61.111 0.00 0.00 44.76 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.