Multiple sequence alignment - TraesCS1A01G072000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G072000 chr1A 100.000 7432 0 0 1 7432 54348427 54355858 0.000000e+00 13725.0
1 TraesCS1A01G072000 chr1D 97.071 4200 98 17 1967 6151 55893090 55897279 0.000000e+00 7051.0
2 TraesCS1A01G072000 chr1D 87.157 1456 110 31 683 2098 55891870 55893288 0.000000e+00 1581.0
3 TraesCS1A01G072000 chr1D 92.876 1109 48 13 6272 7363 55897276 55898370 0.000000e+00 1581.0
4 TraesCS1A01G072000 chr1D 81.746 504 51 22 219 709 55891382 55891857 4.210000e-102 383.0
5 TraesCS1A01G072000 chr1D 93.548 217 13 1 1 217 55891061 55891276 9.300000e-84 322.0
6 TraesCS1A01G072000 chr1D 98.592 71 1 0 7362 7432 55975028 55975098 7.830000e-25 126.0
7 TraesCS1A01G072000 chr1B 93.037 3145 165 29 3024 6151 91554359 91557466 0.000000e+00 4545.0
8 TraesCS1A01G072000 chr1B 86.920 1789 122 45 96 1795 91550767 91552532 0.000000e+00 1905.0
9 TraesCS1A01G072000 chr1B 95.055 728 25 4 2335 3054 91553635 91554359 0.000000e+00 1134.0
10 TraesCS1A01G072000 chr1B 91.039 558 39 9 6272 6828 91557463 91558010 0.000000e+00 743.0
11 TraesCS1A01G072000 chr1B 95.868 121 4 1 6161 6281 623731999 623732118 2.120000e-45 195.0
12 TraesCS1A01G072000 chr1B 81.683 202 23 7 6862 7063 91558224 91558411 9.980000e-34 156.0
13 TraesCS1A01G072000 chr6D 90.815 871 50 11 4896 5762 469908782 469907938 0.000000e+00 1138.0
14 TraesCS1A01G072000 chr6D 93.189 323 22 0 4493 4815 469909103 469908781 6.750000e-130 475.0
15 TraesCS1A01G072000 chr6D 96.491 114 4 0 6160 6273 176737386 176737499 9.840000e-44 189.0
16 TraesCS1A01G072000 chr6D 94.366 71 4 0 7362 7432 441790888 441790958 7.880000e-20 110.0
17 TraesCS1A01G072000 chr5D 83.562 511 64 15 1840 2340 337189483 337188983 1.890000e-125 460.0
18 TraesCS1A01G072000 chr5D 96.774 31 1 0 1816 1846 495891282 495891252 1.300000e-02 52.8
19 TraesCS1A01G072000 chr2A 79.886 527 65 19 1820 2325 6079996 6079490 1.530000e-91 348.0
20 TraesCS1A01G072000 chr2A 79.317 527 68 20 1820 2325 6132747 6132241 1.550000e-86 331.0
21 TraesCS1A01G072000 chr2A 79.317 527 68 20 1820 2325 6183793 6183287 1.550000e-86 331.0
22 TraesCS1A01G072000 chr2A 85.443 158 23 0 1104 1261 6242277 6242434 1.660000e-36 165.0
23 TraesCS1A01G072000 chr2A 85.333 150 20 2 1112 1261 6014007 6014154 3.590000e-33 154.0
24 TraesCS1A01G072000 chr2A 83.648 159 25 1 1104 1261 6038911 6039069 1.670000e-31 148.0
25 TraesCS1A01G072000 chr2A 82.500 160 26 1 1104 1261 6152136 6152295 1.010000e-28 139.0
26 TraesCS1A01G072000 chr2A 87.500 112 14 0 1150 1261 6104764 6104875 6.050000e-26 130.0
27 TraesCS1A01G072000 chr2A 86.170 94 11 2 2041 2133 6132673 6132581 4.740000e-17 100.0
28 TraesCS1A01G072000 chr2A 97.059 34 1 0 1998 2031 23433498 23433531 2.900000e-04 58.4
29 TraesCS1A01G072000 chr7B 81.010 416 60 12 1925 2325 600494425 600494014 5.600000e-81 313.0
30 TraesCS1A01G072000 chr2B 90.821 207 19 0 4097 4303 704775925 704776131 2.040000e-70 278.0
31 TraesCS1A01G072000 chr2B 89.855 69 5 2 2069 2137 561558092 561558026 3.690000e-13 87.9
32 TraesCS1A01G072000 chr5B 78.186 408 52 16 1796 2180 647962914 647963307 7.500000e-55 226.0
33 TraesCS1A01G072000 chr5B 92.453 53 2 2 4814 4864 705615726 705615778 2.880000e-09 75.0
34 TraesCS1A01G072000 chr7D 95.968 124 5 0 6161 6284 447766716 447766839 1.260000e-47 202.0
35 TraesCS1A01G072000 chr7D 82.684 231 27 8 2017 2236 245381586 245381358 7.610000e-45 193.0
36 TraesCS1A01G072000 chr7D 96.471 85 3 0 4095 4179 610614841 610614925 2.800000e-29 141.0
37 TraesCS1A01G072000 chr7A 97.414 116 3 0 6161 6276 173720172 173720287 1.640000e-46 198.0
38 TraesCS1A01G072000 chr4D 98.230 113 2 0 6161 6273 117644061 117643949 1.640000e-46 198.0
39 TraesCS1A01G072000 chr2D 97.414 116 3 0 6160 6275 83539601 83539716 1.640000e-46 198.0
40 TraesCS1A01G072000 chr2D 94.444 126 6 1 6161 6286 644141866 644141990 7.610000e-45 193.0
41 TraesCS1A01G072000 chr3D 95.833 120 4 1 6161 6280 7173408 7173526 7.610000e-45 193.0
42 TraesCS1A01G072000 chr3D 86.093 151 21 0 1107 1257 126621015 126620865 5.970000e-36 163.0
43 TraesCS1A01G072000 chr3D 91.860 86 5 2 4814 4897 51117969 51117884 1.310000e-22 119.0
44 TraesCS1A01G072000 chr3D 96.296 54 2 0 4845 4898 307228883 307228936 1.030000e-13 89.8
45 TraesCS1A01G072000 chr5A 91.176 136 10 2 6139 6273 462868902 462868768 4.580000e-42 183.0
46 TraesCS1A01G072000 chrUn 82.803 157 25 1 1107 1261 414682850 414682694 1.010000e-28 139.0
47 TraesCS1A01G072000 chr3B 89.474 95 6 4 4814 4907 459247663 459247754 4.710000e-22 117.0
48 TraesCS1A01G072000 chr3B 90.698 86 6 2 4814 4897 82069539 82069454 6.090000e-21 113.0
49 TraesCS1A01G072000 chr6B 95.775 71 3 0 7362 7432 667794339 667794409 1.690000e-21 115.0
50 TraesCS1A01G072000 chr6A 95.775 71 3 0 7362 7432 591081346 591081416 1.690000e-21 115.0
51 TraesCS1A01G072000 chr6A 95.238 42 0 1 4814 4853 569999079 569999038 1.730000e-06 65.8
52 TraesCS1A01G072000 chr4A 90.566 53 3 2 4814 4864 609086943 609086891 1.340000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G072000 chr1A 54348427 54355858 7431 False 13725.0 13725 100.0000 1 7432 1 chr1A.!!$F1 7431
1 TraesCS1A01G072000 chr1D 55891061 55898370 7309 False 2183.6 7051 90.4796 1 7363 5 chr1D.!!$F2 7362
2 TraesCS1A01G072000 chr1B 91550767 91558411 7644 False 1696.6 4545 89.5468 96 7063 5 chr1B.!!$F2 6967
3 TraesCS1A01G072000 chr6D 469907938 469909103 1165 True 806.5 1138 92.0020 4493 5762 2 chr6D.!!$R1 1269
4 TraesCS1A01G072000 chr5D 337188983 337189483 500 True 460.0 460 83.5620 1840 2340 1 chr5D.!!$R1 500
5 TraesCS1A01G072000 chr2A 6079490 6079996 506 True 348.0 348 79.8860 1820 2325 1 chr2A.!!$R1 505
6 TraesCS1A01G072000 chr2A 6183287 6183793 506 True 331.0 331 79.3170 1820 2325 1 chr2A.!!$R2 505
7 TraesCS1A01G072000 chr2A 6132241 6132747 506 True 215.5 331 82.7435 1820 2325 2 chr2A.!!$R3 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1173 0.035036 TGGATTAACGTTGGTGCGGA 59.965 50.000 11.99 0.00 35.98 5.54 F
1264 1486 0.036577 CTGGAGGTGAGAAGCTGGTG 60.037 60.000 0.00 0.00 0.00 4.17 F
1542 1788 0.111089 CGAAGCTCTGCGTTGTTCAC 60.111 55.000 0.00 0.00 0.00 3.18 F
1863 2120 1.144716 TTGCTAGCCGCCAGATCTG 59.855 57.895 16.24 16.24 38.05 2.90 F
2284 3266 1.302752 GTGTGCATCTGAGGTGGCA 60.303 57.895 0.00 0.00 0.00 4.92 F
3068 4090 2.264005 TTGTACAAAGTCCATGCCGT 57.736 45.000 5.64 0.00 0.00 5.68 F
4279 5308 1.946768 TGTTGCACTAACCTGACTTGC 59.053 47.619 0.00 0.00 38.55 4.01 F
4281 5310 2.618709 GTTGCACTAACCTGACTTGCTT 59.381 45.455 0.00 0.00 34.18 3.91 F
5269 6309 3.753272 GCTGACTCTTCCTGCATTTGTTA 59.247 43.478 0.00 0.00 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 3245 0.034767 CCACCTCAGATGCACACCAT 60.035 55.000 0.00 0.00 36.70 3.55 R
2284 3266 1.467374 GCCAATTTACAGCGCATCGTT 60.467 47.619 11.47 0.00 0.00 3.85 R
2957 3948 1.890876 TGTCACAGGTGAAAATCCCG 58.109 50.000 3.28 0.00 41.85 5.14 R
3807 4834 1.321474 ACAAGTGAGGTTGTGCATGG 58.679 50.000 0.00 0.00 39.25 3.66 R
4014 5043 0.387565 AAACGGCCCATGAACACAAC 59.612 50.000 0.00 0.00 0.00 3.32 R
4281 5310 1.724623 GCTGTCGCGATCTGTTAAACA 59.275 47.619 14.06 1.02 0.00 2.83 R
6255 7305 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
6259 7309 0.183252 AGCTAGTACTCCCTCCGTCC 59.817 60.000 0.00 0.00 0.00 4.79 R
7130 8375 0.032130 GTGTGCAGTGAGACGAGGAA 59.968 55.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.184022 ACCCTGTTATAATTGAGTAAAGTCCCT 59.816 37.037 0.00 0.00 0.00 4.20
37 38 4.008074 TGAGTAAAGTCCCTGCTCAAAG 57.992 45.455 0.00 0.00 33.84 2.77
46 47 1.471684 CCCTGCTCAAAGAGATGCAAC 59.528 52.381 0.00 0.00 32.58 4.17
48 49 2.161808 CCTGCTCAAAGAGATGCAACAG 59.838 50.000 0.00 0.00 32.58 3.16
53 54 5.010314 TGCTCAAAGAGATGCAACAGAAAAT 59.990 36.000 0.00 0.00 30.82 1.82
192 194 1.886542 GAAGACGGGCAAGGTTCATTT 59.113 47.619 0.00 0.00 0.00 2.32
198 200 2.369394 GGGCAAGGTTCATTTCGATCT 58.631 47.619 0.00 0.00 0.00 2.75
217 219 7.895759 TCGATCTATGATCATCCAAATGTACA 58.104 34.615 12.53 0.00 34.32 2.90
290 396 2.031258 TCTTGTCTTGAACGGCAACA 57.969 45.000 0.00 0.00 31.96 3.33
373 480 1.729131 GTGCAAAACACCATCGCCG 60.729 57.895 0.00 0.00 44.02 6.46
437 545 1.064134 CATCGCCGACGTCATGAGA 59.936 57.895 17.16 13.17 41.18 3.27
446 554 4.598257 GTCATGAGACGGTGGTGG 57.402 61.111 0.00 0.00 34.60 4.61
447 555 1.079127 GTCATGAGACGGTGGTGGG 60.079 63.158 0.00 0.00 34.60 4.61
448 556 2.268920 CATGAGACGGTGGTGGGG 59.731 66.667 0.00 0.00 0.00 4.96
463 571 0.979187 TGGGGGTACGAGAACCATCC 60.979 60.000 8.26 8.85 41.67 3.51
499 608 7.652524 TTCCAGCAATTAACAAGCCATAATA 57.347 32.000 0.00 0.00 0.00 0.98
533 642 1.235724 CTCCACCACCGAGGAAAAAC 58.764 55.000 0.00 0.00 41.22 2.43
546 655 5.690409 CCGAGGAAAAACTAAAAAGGAAAGC 59.310 40.000 0.00 0.00 0.00 3.51
856 1071 4.183865 CTGCAAATAGACAGAATCGGACA 58.816 43.478 0.00 0.00 35.90 4.02
867 1082 1.404391 GAATCGGACAGGTTCTCGCTA 59.596 52.381 0.00 0.00 37.02 4.26
945 1160 3.916061 GCAATTCGCGCTGGATTAA 57.084 47.368 5.56 0.00 0.00 1.40
946 1161 1.466855 GCAATTCGCGCTGGATTAAC 58.533 50.000 5.56 0.00 0.00 2.01
953 1169 0.179200 GCGCTGGATTAACGTTGGTG 60.179 55.000 11.99 2.28 0.00 4.17
954 1170 0.179200 CGCTGGATTAACGTTGGTGC 60.179 55.000 11.99 5.19 0.00 5.01
955 1171 0.179200 GCTGGATTAACGTTGGTGCG 60.179 55.000 11.99 3.03 37.94 5.34
957 1173 0.035036 TGGATTAACGTTGGTGCGGA 59.965 50.000 11.99 0.00 35.98 5.54
958 1174 1.339247 TGGATTAACGTTGGTGCGGAT 60.339 47.619 11.99 0.00 35.98 4.18
991 1210 3.733960 GGTTTCTGTTCGGCGGGC 61.734 66.667 7.21 0.15 0.00 6.13
1095 1317 3.697747 CAGGGGTTCGCGGTGGTA 61.698 66.667 6.13 0.00 0.00 3.25
1261 1483 1.622811 AGAACTGGAGGTGAGAAGCTG 59.377 52.381 0.00 0.00 0.00 4.24
1262 1484 0.689623 AACTGGAGGTGAGAAGCTGG 59.310 55.000 0.00 0.00 0.00 4.85
1263 1485 0.472734 ACTGGAGGTGAGAAGCTGGT 60.473 55.000 0.00 0.00 0.00 4.00
1264 1486 0.036577 CTGGAGGTGAGAAGCTGGTG 60.037 60.000 0.00 0.00 0.00 4.17
1310 1553 1.409064 CGTAGTTCTATGGCTGGAGCA 59.591 52.381 0.20 0.00 44.36 4.26
1366 1609 6.183360 GCTCTGCAATTGGGGATTTAGTATTT 60.183 38.462 7.72 0.00 0.00 1.40
1391 1634 2.760385 AGTCGCCCCTAGAGTGGC 60.760 66.667 7.59 7.59 44.41 5.01
1433 1676 1.792949 GTGCCTTGTAGTGACGAACTG 59.207 52.381 5.89 0.00 40.26 3.16
1434 1677 1.270094 TGCCTTGTAGTGACGAACTGG 60.270 52.381 5.89 0.73 40.26 4.00
1441 1684 1.048601 AGTGACGAACTGGGTGATGT 58.951 50.000 0.00 0.00 37.88 3.06
1446 1689 0.240945 CGAACTGGGTGATGTTTGCC 59.759 55.000 0.00 0.00 0.00 4.52
1454 1697 3.073209 TGGGTGATGTTTGCCAGTAGTTA 59.927 43.478 0.00 0.00 0.00 2.24
1459 1702 3.485463 TGTTTGCCAGTAGTTAGCACT 57.515 42.857 0.00 0.00 35.96 4.40
1460 1703 3.815809 TGTTTGCCAGTAGTTAGCACTT 58.184 40.909 0.00 0.00 35.96 3.16
1461 1704 3.563808 TGTTTGCCAGTAGTTAGCACTTG 59.436 43.478 0.00 0.00 35.96 3.16
1462 1705 3.485463 TTGCCAGTAGTTAGCACTTGT 57.515 42.857 0.00 0.00 35.96 3.16
1463 1706 4.610605 TTGCCAGTAGTTAGCACTTGTA 57.389 40.909 0.00 0.00 35.96 2.41
1464 1707 4.188247 TGCCAGTAGTTAGCACTTGTAG 57.812 45.455 0.00 0.00 34.06 2.74
1500 1745 1.512926 GTGGATGCGTTGAAGTGACT 58.487 50.000 0.00 0.00 0.00 3.41
1503 1748 3.496884 GTGGATGCGTTGAAGTGACTTTA 59.503 43.478 0.00 0.00 0.00 1.85
1504 1749 3.496884 TGGATGCGTTGAAGTGACTTTAC 59.503 43.478 0.00 0.46 0.00 2.01
1505 1750 3.746492 GGATGCGTTGAAGTGACTTTACT 59.254 43.478 0.00 0.00 0.00 2.24
1507 1752 4.530094 TGCGTTGAAGTGACTTTACTTG 57.470 40.909 0.00 0.00 40.78 3.16
1523 1768 5.934935 TTACTTGTGCCTAGTTAGCAAAC 57.065 39.130 0.00 0.00 43.02 2.93
1534 1779 0.790207 TTAGCAAACGAAGCTCTGCG 59.210 50.000 4.46 0.00 42.32 5.18
1542 1788 0.111089 CGAAGCTCTGCGTTGTTCAC 60.111 55.000 0.00 0.00 0.00 3.18
1551 1797 1.964373 CGTTGTTCACGGAAGGGGG 60.964 63.158 0.00 0.00 45.89 5.40
1561 1807 1.930520 GGAAGGGGGCACATGGTAT 59.069 57.895 0.00 0.00 0.00 2.73
1613 1859 7.404671 AACTAATTTGGGGATACATTGTGTC 57.595 36.000 5.06 5.06 39.74 3.67
1616 1863 5.857471 ATTTGGGGATACATTGTGTCATG 57.143 39.130 14.46 0.00 39.74 3.07
1617 1864 2.653726 TGGGGATACATTGTGTCATGC 58.346 47.619 14.46 0.00 39.74 4.06
1623 1870 2.427232 ACATTGTGTCATGCTGTTGC 57.573 45.000 0.00 0.00 40.20 4.17
1677 1924 7.695480 TGCTGGAAGTAGTAAAATTGCAATA 57.305 32.000 13.39 0.00 35.30 1.90
1801 2058 5.918608 AGATATGCTATACTTAATGGGGCG 58.081 41.667 0.00 0.00 0.00 6.13
1814 2071 4.367023 GGGCGTGCTACGTGTCCA 62.367 66.667 0.00 0.00 44.73 4.02
1817 2074 2.337170 CGTGCTACGTGTCCACCA 59.663 61.111 0.00 0.00 36.74 4.17
1818 2075 1.300311 CGTGCTACGTGTCCACCAA 60.300 57.895 0.00 0.00 36.74 3.67
1829 2086 3.058914 CGTGTCCACCAACTGATCTTTTC 60.059 47.826 0.00 0.00 0.00 2.29
1846 2103 1.710816 TTCAAAAGATTGGCCGGGTT 58.289 45.000 2.18 0.00 37.15 4.11
1863 2120 1.144716 TTGCTAGCCGCCAGATCTG 59.855 57.895 16.24 16.24 38.05 2.90
2026 2762 4.142902 AACAGAGATAATGTTGCGGAAACG 60.143 41.667 0.00 0.00 44.51 3.60
2284 3266 1.302752 GTGTGCATCTGAGGTGGCA 60.303 57.895 0.00 0.00 0.00 4.92
3067 4089 3.848272 AATTGTACAAAGTCCATGCCG 57.152 42.857 13.23 0.00 0.00 5.69
3068 4090 2.264005 TTGTACAAAGTCCATGCCGT 57.736 45.000 5.64 0.00 0.00 5.68
3239 4264 3.576078 AGACTGTGTGGGTTCATGAAA 57.424 42.857 10.35 0.00 0.00 2.69
3620 4646 7.805071 AGAAATGAAGTTGCAAATCTAAGAACG 59.195 33.333 0.00 0.00 0.00 3.95
3636 4662 5.352643 AAGAACGTACTTATGGTTTGCAC 57.647 39.130 0.00 0.00 0.00 4.57
3782 4809 6.144402 CACTTGGCAGTTAACACAAAATGATC 59.856 38.462 8.61 0.00 0.00 2.92
3807 4834 4.338379 AACCCACACTGTAGTCTTCTTC 57.662 45.455 0.00 0.00 0.00 2.87
3880 4909 9.832445 ATAATTATACTGTTACTGGTTCCTGTG 57.168 33.333 10.82 0.00 0.00 3.66
4085 5114 9.764363 TTTGATATCAAACAGGCTAGTATACAG 57.236 33.333 23.86 2.10 40.55 2.74
4166 5195 4.734398 ATCTCGATTTCAGTTCAGAGCT 57.266 40.909 0.00 0.00 0.00 4.09
4258 5287 4.150897 TCCTGACAGTTTACTTTGCTGT 57.849 40.909 0.93 0.00 44.97 4.40
4260 5289 4.335315 TCCTGACAGTTTACTTTGCTGTTG 59.665 41.667 0.93 0.00 42.71 3.33
4279 5308 1.946768 TGTTGCACTAACCTGACTTGC 59.053 47.619 0.00 0.00 38.55 4.01
4281 5310 2.618709 GTTGCACTAACCTGACTTGCTT 59.381 45.455 0.00 0.00 34.18 3.91
4631 5665 6.285990 AGGCTTTCAGTTTAAACGAGTTCTA 58.714 36.000 12.54 0.00 0.00 2.10
5120 6160 8.911662 GTGACATATTAATTGGTGTTGTTTCAC 58.088 33.333 0.00 0.00 37.57 3.18
5269 6309 3.753272 GCTGACTCTTCCTGCATTTGTTA 59.247 43.478 0.00 0.00 0.00 2.41
5282 6322 9.710900 TCCTGCATTTGTTATGTATATCTACAG 57.289 33.333 0.00 0.00 41.05 2.74
5283 6323 9.710900 CCTGCATTTGTTATGTATATCTACAGA 57.289 33.333 0.00 0.00 41.05 3.41
5387 6427 6.400568 AGGCATATTTTGACAGTCCAAATTG 58.599 36.000 15.79 14.00 34.87 2.32
5467 6507 7.610692 AGACAACATGATTGGATCCATCATATC 59.389 37.037 26.07 21.15 33.69 1.63
5557 6597 9.744468 AATACGCCTTATATTTTGAAATGGAAC 57.256 29.630 0.00 0.00 0.00 3.62
5650 6691 4.328983 GGTTGTTGTATGACGACGAATCAT 59.671 41.667 0.00 3.86 40.02 2.45
5741 6782 9.988815 GGTATCTCAAGATATTTCTGCTCTTTA 57.011 33.333 3.18 0.00 39.03 1.85
5777 6823 4.712122 AACTGTTGTCGTTTGGAAACAT 57.288 36.364 3.31 0.00 42.32 2.71
5988 7038 5.670361 TGGCTACTAATCCTTTCCCATAAGT 59.330 40.000 0.00 0.00 0.00 2.24
6005 7055 5.124457 CCATAAGTCTACAAACATGCTGCTT 59.876 40.000 0.00 0.00 0.00 3.91
6154 7204 9.605275 TTCACTTGATCAAGATAAATACTCCAG 57.395 33.333 36.15 10.66 40.79 3.86
6155 7205 8.981659 TCACTTGATCAAGATAAATACTCCAGA 58.018 33.333 36.15 13.96 40.79 3.86
6156 7206 9.775854 CACTTGATCAAGATAAATACTCCAGAT 57.224 33.333 36.15 9.91 40.79 2.90
6157 7207 9.775854 ACTTGATCAAGATAAATACTCCAGATG 57.224 33.333 36.15 9.37 40.79 2.90
6158 7208 9.993454 CTTGATCAAGATAAATACTCCAGATGA 57.007 33.333 28.13 0.00 40.79 2.92
6171 7221 9.471702 AATACTCCAGATGATCAAAATTCTTGT 57.528 29.630 0.00 0.26 0.00 3.16
6172 7222 7.388460 ACTCCAGATGATCAAAATTCTTGTC 57.612 36.000 0.00 0.00 0.00 3.18
6173 7223 7.173722 ACTCCAGATGATCAAAATTCTTGTCT 58.826 34.615 0.00 0.00 0.00 3.41
6174 7224 7.668886 ACTCCAGATGATCAAAATTCTTGTCTT 59.331 33.333 0.00 0.00 0.00 3.01
6175 7225 9.170734 CTCCAGATGATCAAAATTCTTGTCTTA 57.829 33.333 0.00 0.00 0.00 2.10
6176 7226 9.170734 TCCAGATGATCAAAATTCTTGTCTTAG 57.829 33.333 0.00 0.00 0.00 2.18
6177 7227 9.170734 CCAGATGATCAAAATTCTTGTCTTAGA 57.829 33.333 0.00 0.00 0.00 2.10
6182 7232 9.219603 TGATCAAAATTCTTGTCTTAGATTCGT 57.780 29.630 0.00 0.00 0.00 3.85
6183 7233 9.695884 GATCAAAATTCTTGTCTTAGATTCGTC 57.304 33.333 0.00 0.00 0.00 4.20
6184 7234 8.833231 TCAAAATTCTTGTCTTAGATTCGTCT 57.167 30.769 0.00 0.00 0.00 4.18
6185 7235 9.923143 TCAAAATTCTTGTCTTAGATTCGTCTA 57.077 29.630 0.00 0.00 0.00 2.59
6191 7241 8.074474 TCTTGTCTTAGATTCGTCTAGATACG 57.926 38.462 0.00 0.00 44.19 3.06
6192 7242 6.782298 TGTCTTAGATTCGTCTAGATACGG 57.218 41.667 0.00 0.00 43.05 4.02
6193 7243 6.519382 TGTCTTAGATTCGTCTAGATACGGA 58.481 40.000 0.00 0.00 43.05 4.69
6194 7244 7.160049 TGTCTTAGATTCGTCTAGATACGGAT 58.840 38.462 0.00 0.00 43.73 4.18
6195 7245 7.117956 TGTCTTAGATTCGTCTAGATACGGATG 59.882 40.741 2.64 0.00 41.14 3.51
6196 7246 7.118101 GTCTTAGATTCGTCTAGATACGGATGT 59.882 40.741 2.64 1.92 41.14 3.06
6197 7247 8.309656 TCTTAGATTCGTCTAGATACGGATGTA 58.690 37.037 2.64 1.02 41.14 2.29
6198 7248 9.100554 CTTAGATTCGTCTAGATACGGATGTAT 57.899 37.037 2.64 0.00 41.14 2.29
6214 7264 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
6215 7265 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
6216 7266 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
6217 7267 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
6260 7310 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
6261 7311 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
6262 7312 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
6263 7313 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
6264 7314 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
6265 7315 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
6266 7316 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6267 7317 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
6268 7318 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6269 7319 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6270 7320 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
6271 7321 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
6272 7322 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6273 7323 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
6274 7324 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
6284 7334 1.749634 GAGGGAGTACTAGCTTTGCGA 59.250 52.381 0.00 0.00 0.00 5.10
6285 7335 1.477295 AGGGAGTACTAGCTTTGCGAC 59.523 52.381 0.00 0.00 0.00 5.19
6288 7338 0.458025 AGTACTAGCTTTGCGACGGC 60.458 55.000 0.00 0.00 40.52 5.68
6289 7339 1.515519 TACTAGCTTTGCGACGGCG 60.516 57.895 6.12 6.12 44.10 6.46
6382 7432 7.360861 CGAGAAGCTTCTGAATCTATACGAGAT 60.361 40.741 33.07 3.00 41.40 2.75
6435 7485 9.476202 TGTTCGAGGAGTTGTTATATTGATATG 57.524 33.333 0.00 0.00 0.00 1.78
6462 7514 8.339344 TGATATCGTATATAACTTCGGTGGAA 57.661 34.615 0.00 0.00 0.00 3.53
6621 7673 4.559835 GCTTGCCGCCTTTCTTTC 57.440 55.556 0.00 0.00 0.00 2.62
6624 7676 1.269778 GCTTGCCGCCTTTCTTTCTTT 60.270 47.619 0.00 0.00 0.00 2.52
6684 7736 2.045926 CCAGGGAGCCGGAACAAG 60.046 66.667 5.05 0.00 0.00 3.16
6705 7757 1.278127 CACCTGTTTGTACCGATCCCT 59.722 52.381 0.00 0.00 0.00 4.20
6739 7791 2.614057 CCTGATGAACGGCTTGTATTCC 59.386 50.000 0.00 0.00 0.00 3.01
6756 7808 5.637810 TGTATTCCGAATAAATCCATCTCGC 59.362 40.000 2.29 0.00 0.00 5.03
6836 7888 2.292292 GCTCGGGTTAAAGCACTTCAAA 59.708 45.455 0.00 0.00 38.42 2.69
6879 8110 4.035909 GGCCGTGTTTCTTTCAAAGAGTTA 59.964 41.667 0.00 0.00 39.03 2.24
6917 8148 2.167219 CGACCGGCTATGCACACTG 61.167 63.158 0.00 0.00 0.00 3.66
6954 8185 4.455917 CGTAACGGTTGTTAAGCAGAAA 57.544 40.909 3.07 0.00 41.99 2.52
6979 8210 1.272490 TGCTAGTTGGACTGGAGAACG 59.728 52.381 0.00 0.00 0.00 3.95
7024 8255 2.754552 TCAATTCCATTTCTTCCGCTGG 59.245 45.455 0.00 0.00 0.00 4.85
7025 8256 1.106285 ATTCCATTTCTTCCGCTGGC 58.894 50.000 0.00 0.00 0.00 4.85
7063 8294 1.178276 GAAGCGGAAGTCTCCTCTGA 58.822 55.000 0.00 0.00 36.86 3.27
7064 8295 1.134175 GAAGCGGAAGTCTCCTCTGAG 59.866 57.143 0.00 0.00 36.86 3.35
7065 8296 0.039035 AGCGGAAGTCTCCTCTGAGT 59.961 55.000 3.66 0.00 35.36 3.41
7066 8297 0.454196 GCGGAAGTCTCCTCTGAGTC 59.546 60.000 3.66 0.00 39.93 3.36
7067 8298 1.953311 GCGGAAGTCTCCTCTGAGTCT 60.953 57.143 3.66 0.00 39.93 3.24
7075 8306 2.376855 TCTCCTCTGAGTCTCTGACCAA 59.623 50.000 5.38 0.00 39.75 3.67
7087 8318 3.260884 TCTCTGACCAAGCCGTTCTTTAT 59.739 43.478 0.00 0.00 31.27 1.40
7091 8322 3.260884 TGACCAAGCCGTTCTTTATCTCT 59.739 43.478 0.00 0.00 31.27 3.10
7102 8347 1.936547 CTTTATCTCTTCCAGCACGGC 59.063 52.381 0.00 0.00 33.14 5.68
7130 8375 2.514458 ATCCAACATCGCTTTCCCTT 57.486 45.000 0.00 0.00 0.00 3.95
7131 8376 2.286365 TCCAACATCGCTTTCCCTTT 57.714 45.000 0.00 0.00 0.00 3.11
7142 8387 2.689646 CTTTCCCTTTCCTCGTCTCAC 58.310 52.381 0.00 0.00 0.00 3.51
7163 8408 3.070018 CTGCACACCTACCTCTTTCAAG 58.930 50.000 0.00 0.00 0.00 3.02
7189 8434 0.179000 ATCACTTCCCAGATCCGTGC 59.821 55.000 0.00 0.00 0.00 5.34
7217 8462 4.764823 TGCGTTTTCCTCTTCCACATAAAT 59.235 37.500 0.00 0.00 0.00 1.40
7364 8609 5.358298 AGAACGTGTTTGATTTTAGGAGC 57.642 39.130 0.00 0.00 0.00 4.70
7365 8610 4.819630 AGAACGTGTTTGATTTTAGGAGCA 59.180 37.500 0.00 0.00 0.00 4.26
7366 8611 5.473504 AGAACGTGTTTGATTTTAGGAGCAT 59.526 36.000 0.00 0.00 0.00 3.79
7367 8612 5.046910 ACGTGTTTGATTTTAGGAGCATG 57.953 39.130 0.00 0.00 0.00 4.06
7368 8613 4.759693 ACGTGTTTGATTTTAGGAGCATGA 59.240 37.500 0.00 0.00 0.00 3.07
7369 8614 5.240623 ACGTGTTTGATTTTAGGAGCATGAA 59.759 36.000 0.00 0.00 0.00 2.57
7370 8615 6.148948 CGTGTTTGATTTTAGGAGCATGAAA 58.851 36.000 0.00 0.00 0.00 2.69
7371 8616 6.306356 CGTGTTTGATTTTAGGAGCATGAAAG 59.694 38.462 0.00 0.00 0.00 2.62
7372 8617 7.147976 GTGTTTGATTTTAGGAGCATGAAAGT 58.852 34.615 0.00 0.00 0.00 2.66
7373 8618 7.115378 GTGTTTGATTTTAGGAGCATGAAAGTG 59.885 37.037 0.00 0.00 0.00 3.16
7374 8619 6.899393 TTGATTTTAGGAGCATGAAAGTGT 57.101 33.333 0.00 0.00 0.00 3.55
7375 8620 6.500684 TGATTTTAGGAGCATGAAAGTGTC 57.499 37.500 0.00 0.00 0.00 3.67
7376 8621 6.240894 TGATTTTAGGAGCATGAAAGTGTCT 58.759 36.000 0.00 0.00 0.00 3.41
7377 8622 6.372659 TGATTTTAGGAGCATGAAAGTGTCTC 59.627 38.462 0.00 0.00 0.00 3.36
7378 8623 5.489792 TTTAGGAGCATGAAAGTGTCTCT 57.510 39.130 0.00 0.00 0.00 3.10
7379 8624 6.605471 TTTAGGAGCATGAAAGTGTCTCTA 57.395 37.500 0.00 0.00 0.00 2.43
7380 8625 6.798427 TTAGGAGCATGAAAGTGTCTCTAT 57.202 37.500 0.00 0.00 0.00 1.98
7381 8626 7.898014 TTAGGAGCATGAAAGTGTCTCTATA 57.102 36.000 0.00 0.00 0.00 1.31
7382 8627 6.403866 AGGAGCATGAAAGTGTCTCTATAG 57.596 41.667 0.00 0.00 0.00 1.31
7383 8628 5.896678 AGGAGCATGAAAGTGTCTCTATAGT 59.103 40.000 0.00 0.00 0.00 2.12
7384 8629 6.382570 AGGAGCATGAAAGTGTCTCTATAGTT 59.617 38.462 0.00 0.00 0.00 2.24
7385 8630 6.478344 GGAGCATGAAAGTGTCTCTATAGTTG 59.522 42.308 0.00 0.00 0.00 3.16
7386 8631 6.344500 AGCATGAAAGTGTCTCTATAGTTGG 58.656 40.000 0.00 0.00 0.00 3.77
7387 8632 6.155221 AGCATGAAAGTGTCTCTATAGTTGGA 59.845 38.462 0.00 0.00 0.00 3.53
7388 8633 6.818644 GCATGAAAGTGTCTCTATAGTTGGAA 59.181 38.462 0.00 0.00 0.00 3.53
7389 8634 7.334421 GCATGAAAGTGTCTCTATAGTTGGAAA 59.666 37.037 0.00 0.00 0.00 3.13
7390 8635 8.877779 CATGAAAGTGTCTCTATAGTTGGAAAG 58.122 37.037 0.00 0.00 0.00 2.62
7391 8636 7.386851 TGAAAGTGTCTCTATAGTTGGAAAGG 58.613 38.462 0.00 0.00 0.00 3.11
7392 8637 5.941555 AGTGTCTCTATAGTTGGAAAGGG 57.058 43.478 0.00 0.00 0.00 3.95
7393 8638 5.590818 AGTGTCTCTATAGTTGGAAAGGGA 58.409 41.667 0.00 0.00 0.00 4.20
7394 8639 5.422650 AGTGTCTCTATAGTTGGAAAGGGAC 59.577 44.000 0.00 0.00 39.45 4.46
7395 8640 5.187186 GTGTCTCTATAGTTGGAAAGGGACA 59.813 44.000 0.00 0.00 44.97 4.02
7396 8641 5.187186 TGTCTCTATAGTTGGAAAGGGACAC 59.813 44.000 0.00 0.00 42.92 3.67
7397 8642 4.401519 TCTCTATAGTTGGAAAGGGACACG 59.598 45.833 0.00 0.00 0.00 4.49
7398 8643 4.091549 TCTATAGTTGGAAAGGGACACGT 58.908 43.478 0.00 0.00 0.00 4.49
7399 8644 3.782656 ATAGTTGGAAAGGGACACGTT 57.217 42.857 0.00 0.00 0.00 3.99
7400 8645 2.430248 AGTTGGAAAGGGACACGTTT 57.570 45.000 0.00 0.00 37.39 3.60
7401 8646 2.021457 AGTTGGAAAGGGACACGTTTG 58.979 47.619 0.00 0.00 35.06 2.93
7402 8647 1.746787 GTTGGAAAGGGACACGTTTGT 59.253 47.619 0.00 0.00 39.32 2.83
7413 8658 4.705337 GACACGTTTGTCCTCTAGAGAT 57.295 45.455 21.76 0.00 45.77 2.75
7414 8659 4.416620 GACACGTTTGTCCTCTAGAGATG 58.583 47.826 21.76 8.54 45.77 2.90
7415 8660 4.079970 ACACGTTTGTCCTCTAGAGATGA 58.920 43.478 21.76 7.95 0.00 2.92
7416 8661 4.156922 ACACGTTTGTCCTCTAGAGATGAG 59.843 45.833 21.76 7.31 0.00 2.90
7417 8662 4.156922 CACGTTTGTCCTCTAGAGATGAGT 59.843 45.833 21.76 8.49 0.00 3.41
7418 8663 4.156922 ACGTTTGTCCTCTAGAGATGAGTG 59.843 45.833 21.76 3.20 0.00 3.51
7419 8664 4.439426 CGTTTGTCCTCTAGAGATGAGTGG 60.439 50.000 21.76 3.35 0.00 4.00
7420 8665 4.323569 TTGTCCTCTAGAGATGAGTGGT 57.676 45.455 21.76 0.00 0.00 4.16
7421 8666 4.323569 TGTCCTCTAGAGATGAGTGGTT 57.676 45.455 21.76 0.00 0.00 3.67
7422 8667 5.452341 TGTCCTCTAGAGATGAGTGGTTA 57.548 43.478 21.76 0.00 0.00 2.85
7423 8668 6.019656 TGTCCTCTAGAGATGAGTGGTTAT 57.980 41.667 21.76 0.00 0.00 1.89
7424 8669 6.436027 TGTCCTCTAGAGATGAGTGGTTATT 58.564 40.000 21.76 0.00 0.00 1.40
7425 8670 7.583625 TGTCCTCTAGAGATGAGTGGTTATTA 58.416 38.462 21.76 0.00 0.00 0.98
7426 8671 8.059461 TGTCCTCTAGAGATGAGTGGTTATTAA 58.941 37.037 21.76 0.00 0.00 1.40
7427 8672 8.354426 GTCCTCTAGAGATGAGTGGTTATTAAC 58.646 40.741 21.76 0.00 0.00 2.01
7428 8673 8.059461 TCCTCTAGAGATGAGTGGTTATTAACA 58.941 37.037 21.76 0.00 0.00 2.41
7429 8674 8.138712 CCTCTAGAGATGAGTGGTTATTAACAC 58.861 40.741 21.76 0.00 37.86 3.32
7430 8675 8.008513 TCTAGAGATGAGTGGTTATTAACACC 57.991 38.462 8.73 0.00 38.34 4.16
7431 8676 6.875972 AGAGATGAGTGGTTATTAACACCT 57.124 37.500 8.73 3.42 38.34 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.640771 TTGAGCAGGGACTTTACTCAAT 57.359 40.909 0.00 0.00 41.98 2.57
22 23 2.617532 GCATCTCTTTGAGCAGGGACTT 60.618 50.000 0.00 0.00 34.60 3.01
29 30 3.130280 TCTGTTGCATCTCTTTGAGCA 57.870 42.857 0.00 0.00 34.79 4.26
46 47 6.967199 GGGCGACTTTACTCAATTATTTTCTG 59.033 38.462 0.00 0.00 0.00 3.02
48 49 6.848451 TGGGCGACTTTACTCAATTATTTTC 58.152 36.000 0.00 0.00 0.00 2.29
53 54 5.310451 ACTTTGGGCGACTTTACTCAATTA 58.690 37.500 0.00 0.00 0.00 1.40
192 194 7.895759 TGTACATTTGGATGATCATAGATCGA 58.104 34.615 8.54 0.00 36.73 3.59
198 200 7.498900 GTCCTGTTGTACATTTGGATGATCATA 59.501 37.037 8.54 0.00 36.73 2.15
217 219 1.066858 CAGGTGCTACGATGTCCTGTT 60.067 52.381 0.00 0.00 40.25 3.16
301 407 3.558411 GACATCCAGAGCACGCGC 61.558 66.667 5.73 0.00 38.99 6.86
373 480 1.632422 CGCCAGGATTTTTCATGCAC 58.368 50.000 0.00 0.00 0.00 4.57
437 545 4.619320 TCGTACCCCCACCACCGT 62.619 66.667 0.00 0.00 0.00 4.83
446 554 1.440476 CGGATGGTTCTCGTACCCC 59.560 63.158 0.00 0.00 37.39 4.95
447 555 1.227176 GCGGATGGTTCTCGTACCC 60.227 63.158 0.00 0.00 37.39 3.69
448 556 1.588139 CGCGGATGGTTCTCGTACC 60.588 63.158 0.00 0.00 38.73 3.34
463 571 0.726827 TGCTGGAATTAAGCTTCGCG 59.273 50.000 0.00 0.00 41.42 5.87
515 624 0.841289 AGTTTTTCCTCGGTGGTGGA 59.159 50.000 0.00 0.00 37.07 4.02
531 640 2.158430 TCCCCCGCTTTCCTTTTTAGTT 60.158 45.455 0.00 0.00 0.00 2.24
533 642 2.209690 TCCCCCGCTTTCCTTTTTAG 57.790 50.000 0.00 0.00 0.00 1.85
546 655 4.386711 GTGATTTACTAATCCTTCCCCCG 58.613 47.826 0.00 0.00 39.56 5.73
599 709 4.504916 CCTCCGCGAGTGAGCTGG 62.505 72.222 8.23 0.00 34.40 4.85
600 710 4.504916 CCCTCCGCGAGTGAGCTG 62.505 72.222 8.23 0.00 34.40 4.24
601 711 4.742649 TCCCTCCGCGAGTGAGCT 62.743 66.667 8.23 0.00 34.40 4.09
602 712 4.200283 CTCCCTCCGCGAGTGAGC 62.200 72.222 8.23 0.00 28.67 4.26
604 714 3.997400 CTCCTCCCTCCGCGAGTGA 62.997 68.421 8.23 0.00 0.00 3.41
653 785 3.713615 GAAGTGCGCGATGCTGCTG 62.714 63.158 12.10 0.00 46.63 4.41
654 786 3.494336 GAAGTGCGCGATGCTGCT 61.494 61.111 12.10 0.00 46.63 4.24
655 787 3.313007 TTGAAGTGCGCGATGCTGC 62.313 57.895 12.10 2.78 46.63 5.25
656 788 1.225936 CTTGAAGTGCGCGATGCTG 60.226 57.895 12.10 0.00 46.63 4.41
657 789 2.393768 CCTTGAAGTGCGCGATGCT 61.394 57.895 12.10 0.00 46.63 3.79
702 856 1.153127 TTATAAAGCGGTGGGGGCG 60.153 57.895 0.00 0.00 35.00 6.13
830 1045 3.310774 CGATTCTGTCTATTTGCAGGTGG 59.689 47.826 0.00 0.00 33.81 4.61
835 1050 4.183865 CTGTCCGATTCTGTCTATTTGCA 58.816 43.478 0.00 0.00 0.00 4.08
856 1071 2.359967 GCCCACCTAGCGAGAACCT 61.360 63.158 0.00 0.00 0.00 3.50
940 1155 3.481112 AAATCCGCACCAACGTTAATC 57.519 42.857 0.00 0.00 0.00 1.75
942 1157 3.712091 AAAAATCCGCACCAACGTTAA 57.288 38.095 0.00 0.00 0.00 2.01
965 1183 2.483013 CCGAACAGAAACCTGAGACACA 60.483 50.000 0.00 0.00 35.67 3.72
1261 1483 1.160137 CAACAGTAAGGAGCAGCACC 58.840 55.000 0.00 0.00 0.00 5.01
1262 1484 1.160137 CCAACAGTAAGGAGCAGCAC 58.840 55.000 0.00 0.00 0.00 4.40
1263 1485 1.002430 CTCCAACAGTAAGGAGCAGCA 59.998 52.381 8.62 0.00 44.37 4.41
1264 1486 1.731720 CTCCAACAGTAAGGAGCAGC 58.268 55.000 8.62 0.00 44.37 5.25
1270 1513 2.779506 GTTCCACCTCCAACAGTAAGG 58.220 52.381 0.00 0.00 36.21 2.69
1283 1526 2.167900 AGCCATAGAACTACGTTCCACC 59.832 50.000 0.00 0.00 42.85 4.61
1310 1553 0.179000 CTGGGCAGTAAGAATCGGCT 59.821 55.000 0.00 0.00 0.00 5.52
1366 1609 1.005097 TCTAGGGGCGACTGAACAGTA 59.995 52.381 7.46 0.00 42.66 2.74
1433 1676 2.200373 ACTACTGGCAAACATCACCC 57.800 50.000 0.00 0.00 0.00 4.61
1434 1677 3.127030 GCTAACTACTGGCAAACATCACC 59.873 47.826 0.00 0.00 0.00 4.02
1441 1684 3.815809 ACAAGTGCTAACTACTGGCAAA 58.184 40.909 0.00 0.00 37.73 3.68
1446 1689 6.807230 CCTACAACTACAAGTGCTAACTACTG 59.193 42.308 0.00 0.00 34.77 2.74
1454 1697 7.241042 TCTTATTCCTACAACTACAAGTGCT 57.759 36.000 0.00 0.00 0.00 4.40
1459 1702 6.070424 CCACCCTCTTATTCCTACAACTACAA 60.070 42.308 0.00 0.00 0.00 2.41
1460 1703 5.424252 CCACCCTCTTATTCCTACAACTACA 59.576 44.000 0.00 0.00 0.00 2.74
1461 1704 5.659971 TCCACCCTCTTATTCCTACAACTAC 59.340 44.000 0.00 0.00 0.00 2.73
1462 1705 5.845734 TCCACCCTCTTATTCCTACAACTA 58.154 41.667 0.00 0.00 0.00 2.24
1463 1706 4.695606 TCCACCCTCTTATTCCTACAACT 58.304 43.478 0.00 0.00 0.00 3.16
1464 1707 5.368989 CATCCACCCTCTTATTCCTACAAC 58.631 45.833 0.00 0.00 0.00 3.32
1500 1745 5.049954 CGTTTGCTAACTAGGCACAAGTAAA 60.050 40.000 9.32 0.00 39.55 2.01
1503 1748 2.806244 CGTTTGCTAACTAGGCACAAGT 59.194 45.455 9.32 0.00 39.55 3.16
1504 1749 3.064207 TCGTTTGCTAACTAGGCACAAG 58.936 45.455 9.32 0.00 39.55 3.16
1505 1750 3.114668 TCGTTTGCTAACTAGGCACAA 57.885 42.857 9.32 0.00 39.55 3.33
1507 1752 2.159693 GCTTCGTTTGCTAACTAGGCAC 60.160 50.000 12.92 0.00 39.55 5.01
1523 1768 0.111089 GTGAACAACGCAGAGCTTCG 60.111 55.000 0.00 0.00 0.00 3.79
1534 1779 2.265904 GCCCCCTTCCGTGAACAAC 61.266 63.158 0.00 0.00 0.00 3.32
1542 1788 1.994885 ATACCATGTGCCCCCTTCCG 61.995 60.000 0.00 0.00 0.00 4.30
1543 1789 0.261696 AATACCATGTGCCCCCTTCC 59.738 55.000 0.00 0.00 0.00 3.46
1551 1797 4.821805 ACTATGCTAACCAATACCATGTGC 59.178 41.667 0.00 0.00 0.00 4.57
1561 1807 7.850935 AGCCTAGTATAACTATGCTAACCAA 57.149 36.000 13.13 0.00 46.17 3.67
1583 1829 5.937111 TGTATCCCCAAATTAGTTCCTAGC 58.063 41.667 0.00 0.00 0.00 3.42
1593 1839 5.395546 GCATGACACAATGTATCCCCAAATT 60.396 40.000 0.00 0.00 0.00 1.82
1595 1841 3.446873 GCATGACACAATGTATCCCCAAA 59.553 43.478 0.00 0.00 0.00 3.28
1613 1859 4.798288 CCATTCGGCAACAGCATG 57.202 55.556 0.00 0.00 46.00 4.06
1634 1881 4.093998 CAGCATTATATGAATGGACGAGCC 59.906 45.833 0.00 0.00 37.10 4.70
1641 1888 9.725019 TTACTACTTCCAGCATTATATGAATGG 57.275 33.333 4.80 0.00 38.98 3.16
1775 2032 8.150945 CGCCCCATTAAGTATAGCATATCTAAT 58.849 37.037 0.00 0.00 0.00 1.73
1801 2058 0.249741 AGTTGGTGGACACGTAGCAC 60.250 55.000 0.00 0.00 0.00 4.40
1814 2071 7.212274 CCAATCTTTTGAAAAGATCAGTTGGT 58.788 34.615 27.59 11.93 39.77 3.67
1817 2074 6.226052 GGCCAATCTTTTGAAAAGATCAGTT 58.774 36.000 27.59 14.12 39.77 3.16
1818 2075 5.565439 CGGCCAATCTTTTGAAAAGATCAGT 60.565 40.000 27.59 13.81 39.77 3.41
1829 2086 0.670239 GCAACCCGGCCAATCTTTTG 60.670 55.000 2.24 0.00 0.00 2.44
2012 2748 2.570442 ACAAACGTTTCCGCAACATT 57.430 40.000 11.37 0.00 37.70 2.71
2043 2779 2.492881 CTGCAATATGACCTTTGTGGCA 59.507 45.455 0.00 0.00 40.22 4.92
2044 2780 2.754552 TCTGCAATATGACCTTTGTGGC 59.245 45.455 0.00 0.00 40.22 5.01
2182 3164 2.509561 GAGAGCCGCTCGTTTCCC 60.510 66.667 14.71 0.00 35.36 3.97
2263 3245 0.034767 CCACCTCAGATGCACACCAT 60.035 55.000 0.00 0.00 36.70 3.55
2284 3266 1.467374 GCCAATTTACAGCGCATCGTT 60.467 47.619 11.47 0.00 0.00 3.85
2767 3758 2.153366 AATGTTTTGCTTTCCCTGCG 57.847 45.000 0.00 0.00 0.00 5.18
2957 3948 1.890876 TGTCACAGGTGAAAATCCCG 58.109 50.000 3.28 0.00 41.85 5.14
3067 4089 5.940192 TGGGATGCGAATATACATTTCAC 57.060 39.130 0.00 0.00 0.00 3.18
3068 4090 5.825151 TGTTGGGATGCGAATATACATTTCA 59.175 36.000 0.00 0.00 0.00 2.69
3239 4264 6.469782 ACCATGAGACAGTTCAATTTGTTT 57.530 33.333 0.00 0.00 0.00 2.83
3620 4646 8.488651 ACTACTAATGTGCAAACCATAAGTAC 57.511 34.615 0.00 0.00 0.00 2.73
3730 4757 2.949447 ACAGTTGCAGTGGAGGATTTT 58.051 42.857 3.45 0.00 0.00 1.82
3782 4809 4.158025 AGAAGACTACAGTGTGGGTTATCG 59.842 45.833 11.67 0.00 0.00 2.92
3807 4834 1.321474 ACAAGTGAGGTTGTGCATGG 58.679 50.000 0.00 0.00 39.25 3.66
3848 4877 8.446599 ACCAGTAACAGTATAATTATGTTGCC 57.553 34.615 8.28 2.16 39.46 4.52
3880 4909 8.430801 AGTAGCAAATTGTATGATCAGACTTC 57.569 34.615 20.42 4.57 0.00 3.01
4014 5043 0.387565 AAACGGCCCATGAACACAAC 59.612 50.000 0.00 0.00 0.00 3.32
4074 5103 8.969267 GTGAACACATGAATACTGTATACTAGC 58.031 37.037 0.00 0.00 0.00 3.42
4258 5287 2.357637 GCAAGTCAGGTTAGTGCAACAA 59.642 45.455 0.00 0.00 41.43 2.83
4260 5289 2.222027 AGCAAGTCAGGTTAGTGCAAC 58.778 47.619 0.00 0.00 37.68 4.17
4279 5308 3.722082 GCTGTCGCGATCTGTTAAACAAG 60.722 47.826 14.06 0.00 0.00 3.16
4281 5310 1.724623 GCTGTCGCGATCTGTTAAACA 59.275 47.619 14.06 1.02 0.00 2.83
4963 6001 5.781210 TGAAATCCTGCAAAATACACACA 57.219 34.783 0.00 0.00 0.00 3.72
4964 6002 5.577945 CCATGAAATCCTGCAAAATACACAC 59.422 40.000 0.00 0.00 0.00 3.82
5088 6128 5.068987 ACACCAATTAATATGTCACCATGCC 59.931 40.000 0.00 0.00 32.29 4.40
5282 6322 4.560128 TGTCTGTGCTGTAAATGAGACTC 58.440 43.478 0.00 0.00 32.70 3.36
5283 6323 4.607293 TGTCTGTGCTGTAAATGAGACT 57.393 40.909 0.00 0.00 32.70 3.24
5387 6427 4.584327 ACTAATTGTTGGTCAAAGCACC 57.416 40.909 0.00 0.00 39.62 5.01
5467 6507 5.885230 TCAGTCATAAGATGTGCTTTTGG 57.115 39.130 0.00 0.00 36.55 3.28
5557 6597 4.854399 TGCAACGAAATGGAAGTTACTTG 58.146 39.130 0.93 0.00 0.00 3.16
5558 6598 5.508200 TTGCAACGAAATGGAAGTTACTT 57.492 34.783 0.00 0.00 0.00 2.24
5571 6611 4.789481 GCTGATTCTGAGTTTTGCAACGAA 60.789 41.667 0.00 0.00 38.03 3.85
5650 6691 8.043113 AGAAGTCATGTCAATAATGCTCTGTAA 58.957 33.333 0.00 0.00 0.00 2.41
5741 6782 6.435292 ACAACAGTTTCTACCACTAAGGAT 57.565 37.500 0.00 0.00 41.22 3.24
5799 6845 3.257469 TGCCTCTCAAATCTGCTAGTG 57.743 47.619 0.00 0.00 0.00 2.74
5847 6893 4.616802 GCACCTGATCAAATAAAACACACG 59.383 41.667 0.00 0.00 0.00 4.49
5962 7012 3.731431 TGGGAAAGGATTAGTAGCCAGA 58.269 45.455 0.00 0.00 30.04 3.86
6005 7055 5.356426 CACCACAATAGGATCGTTATCACA 58.644 41.667 0.00 0.00 33.41 3.58
6151 7201 9.170734 TCTAAGACAAGAATTTTGATCATCTGG 57.829 33.333 0.00 0.00 0.00 3.86
6156 7206 9.219603 ACGAATCTAAGACAAGAATTTTGATCA 57.780 29.630 0.00 0.00 0.00 2.92
6157 7207 9.695884 GACGAATCTAAGACAAGAATTTTGATC 57.304 33.333 0.00 0.00 0.00 2.92
6158 7208 9.442047 AGACGAATCTAAGACAAGAATTTTGAT 57.558 29.630 0.00 0.00 31.46 2.57
6159 7209 8.833231 AGACGAATCTAAGACAAGAATTTTGA 57.167 30.769 0.00 0.00 31.46 2.69
6165 7215 8.549548 CGTATCTAGACGAATCTAAGACAAGAA 58.450 37.037 0.00 0.00 45.82 2.52
6166 7216 7.171167 CCGTATCTAGACGAATCTAAGACAAGA 59.829 40.741 5.60 0.00 45.82 3.02
6167 7217 7.171167 TCCGTATCTAGACGAATCTAAGACAAG 59.829 40.741 5.60 0.00 45.82 3.16
6168 7218 6.988580 TCCGTATCTAGACGAATCTAAGACAA 59.011 38.462 5.60 0.00 45.82 3.18
6169 7219 6.519382 TCCGTATCTAGACGAATCTAAGACA 58.481 40.000 5.60 0.00 45.82 3.41
6170 7220 7.118101 ACATCCGTATCTAGACGAATCTAAGAC 59.882 40.741 5.60 0.00 45.82 3.01
6171 7221 7.160049 ACATCCGTATCTAGACGAATCTAAGA 58.840 38.462 5.60 0.00 45.82 2.10
6172 7222 7.367159 ACATCCGTATCTAGACGAATCTAAG 57.633 40.000 5.60 0.00 45.82 2.18
6188 7238 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
6189 7239 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
6190 7240 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
6191 7241 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
6234 7284 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
6235 7285 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
6236 7286 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
6237 7287 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
6238 7288 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
6239 7289 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
6240 7290 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
6241 7291 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
6242 7292 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
6243 7293 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
6244 7294 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
6245 7295 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6246 7296 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
6247 7297 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6248 7298 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
6249 7299 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6250 7300 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6251 7301 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6252 7302 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6253 7303 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
6254 7304 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
6255 7305 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
6256 7306 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
6257 7307 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
6258 7308 0.822944 GCTAGTACTCCCTCCGTCCC 60.823 65.000 0.00 0.00 0.00 4.46
6259 7309 0.183252 AGCTAGTACTCCCTCCGTCC 59.817 60.000 0.00 0.00 0.00 4.79
6260 7310 2.055684 AAGCTAGTACTCCCTCCGTC 57.944 55.000 0.00 0.00 0.00 4.79
6261 7311 2.100989 CAAAGCTAGTACTCCCTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
6262 7312 1.202428 GCAAAGCTAGTACTCCCTCCG 60.202 57.143 0.00 0.00 0.00 4.63
6263 7313 1.202428 CGCAAAGCTAGTACTCCCTCC 60.202 57.143 0.00 0.00 0.00 4.30
6264 7314 1.749634 TCGCAAAGCTAGTACTCCCTC 59.250 52.381 0.00 0.00 0.00 4.30
6265 7315 1.477295 GTCGCAAAGCTAGTACTCCCT 59.523 52.381 0.00 0.00 0.00 4.20
6266 7316 1.798079 CGTCGCAAAGCTAGTACTCCC 60.798 57.143 0.00 0.00 0.00 4.30
6267 7317 1.546834 CGTCGCAAAGCTAGTACTCC 58.453 55.000 0.00 0.00 0.00 3.85
6268 7318 1.546834 CCGTCGCAAAGCTAGTACTC 58.453 55.000 0.00 0.00 0.00 2.59
6269 7319 0.458025 GCCGTCGCAAAGCTAGTACT 60.458 55.000 0.00 0.00 34.03 2.73
6270 7320 1.740043 CGCCGTCGCAAAGCTAGTAC 61.740 60.000 0.00 0.00 34.03 2.73
6271 7321 1.515519 CGCCGTCGCAAAGCTAGTA 60.516 57.895 0.00 0.00 34.03 1.82
6272 7322 2.809601 CGCCGTCGCAAAGCTAGT 60.810 61.111 0.00 0.00 34.03 2.57
6273 7323 3.554692 CCGCCGTCGCAAAGCTAG 61.555 66.667 0.00 0.00 34.03 3.42
6284 7334 4.988598 CAGTTCACAGCCCGCCGT 62.989 66.667 0.00 0.00 0.00 5.68
6337 7387 4.368391 CAGGTGTCACTCCTGCAC 57.632 61.111 12.94 0.00 44.46 4.57
6435 7485 6.691818 CCACCGAAGTTATATACGATATCAGC 59.308 42.308 3.12 0.00 0.00 4.26
6444 7496 4.989168 CCAGCTTCCACCGAAGTTATATAC 59.011 45.833 2.13 0.00 46.24 1.47
6462 7514 1.757306 CTGTCCACCTTGTCCAGCT 59.243 57.895 0.00 0.00 0.00 4.24
6621 7673 1.402787 AAAGGTCCACACAGCCAAAG 58.597 50.000 0.00 0.00 0.00 2.77
6624 7676 1.213182 TGTAAAAGGTCCACACAGCCA 59.787 47.619 0.00 0.00 0.00 4.75
6684 7736 1.084289 GGATCGGTACAAACAGGTGC 58.916 55.000 0.00 0.00 0.00 5.01
6739 7791 3.049912 TCACGCGAGATGGATTTATTCG 58.950 45.455 15.93 0.00 0.00 3.34
6756 7808 2.093500 TCAGGTTCCTTCCATCATCACG 60.093 50.000 0.00 0.00 0.00 4.35
6807 7859 2.737679 GCTTTAACCCGAGCATACGTCT 60.738 50.000 0.00 0.00 38.73 4.18
6836 7888 3.119280 GCCACACAAACCACTTTACACTT 60.119 43.478 0.00 0.00 0.00 3.16
6879 8110 0.608856 TCAATGGCATGCACGGAACT 60.609 50.000 21.36 0.00 0.00 3.01
6917 8148 1.368641 TACGCATTGGATGACTGCAC 58.631 50.000 0.00 0.00 35.64 4.57
6954 8185 3.093057 CTCCAGTCCAACTAGCACTACT 58.907 50.000 0.00 0.00 0.00 2.57
7033 8264 1.136500 CTTCCGCTTCAGGTAGTACCC 59.864 57.143 16.05 0.00 39.75 3.69
7036 8267 3.015327 GAGACTTCCGCTTCAGGTAGTA 58.985 50.000 0.00 0.00 41.14 1.82
7037 8268 1.819903 GAGACTTCCGCTTCAGGTAGT 59.180 52.381 0.00 0.00 43.27 2.73
7038 8269 1.135333 GGAGACTTCCGCTTCAGGTAG 59.865 57.143 0.00 0.00 35.18 3.18
7039 8270 1.183549 GGAGACTTCCGCTTCAGGTA 58.816 55.000 0.00 0.00 32.79 3.08
7063 8294 0.318762 GAACGGCTTGGTCAGAGACT 59.681 55.000 0.00 0.00 32.47 3.24
7064 8295 0.318762 AGAACGGCTTGGTCAGAGAC 59.681 55.000 0.00 0.00 0.00 3.36
7065 8296 1.048601 AAGAACGGCTTGGTCAGAGA 58.951 50.000 0.00 0.00 34.93 3.10
7066 8297 1.884235 AAAGAACGGCTTGGTCAGAG 58.116 50.000 0.00 0.00 36.80 3.35
7067 8298 3.260884 AGATAAAGAACGGCTTGGTCAGA 59.739 43.478 0.00 0.00 36.80 3.27
7075 8306 3.680196 GCTGGAAGAGATAAAGAACGGCT 60.680 47.826 0.00 0.00 34.07 5.52
7087 8318 0.898326 TAGTGCCGTGCTGGAAGAGA 60.898 55.000 0.00 0.00 42.00 3.10
7091 8322 2.046009 TTGGTAGTGCCGTGCTGGAA 62.046 55.000 0.00 0.00 42.00 3.53
7102 8347 3.009723 AGCGATGTTGGATTTGGTAGTG 58.990 45.455 0.00 0.00 0.00 2.74
7130 8375 0.032130 GTGTGCAGTGAGACGAGGAA 59.968 55.000 0.00 0.00 0.00 3.36
7131 8376 1.660355 GTGTGCAGTGAGACGAGGA 59.340 57.895 0.00 0.00 0.00 3.71
7142 8387 2.839486 TGAAAGAGGTAGGTGTGCAG 57.161 50.000 0.00 0.00 0.00 4.41
7163 8408 4.752101 CGGATCTGGGAAGTGATTGATTAC 59.248 45.833 0.00 0.00 0.00 1.89
7189 8434 1.202348 GGAAGAGGAAAACGCATTGGG 59.798 52.381 0.00 0.00 0.00 4.12
7217 8462 3.525609 TGCCTGAATATTGTTCCCCACTA 59.474 43.478 0.00 0.00 0.00 2.74
7231 8476 2.821969 GCCATTCCGAATATGCCTGAAT 59.178 45.455 0.00 0.00 0.00 2.57
7363 8608 6.341316 TCCAACTATAGAGACACTTTCATGC 58.659 40.000 6.78 0.00 0.00 4.06
7364 8609 8.777865 TTTCCAACTATAGAGACACTTTCATG 57.222 34.615 6.78 0.00 0.00 3.07
7365 8610 8.043710 CCTTTCCAACTATAGAGACACTTTCAT 58.956 37.037 6.78 0.00 0.00 2.57
7366 8611 7.386851 CCTTTCCAACTATAGAGACACTTTCA 58.613 38.462 6.78 0.00 0.00 2.69
7367 8612 6.819146 CCCTTTCCAACTATAGAGACACTTTC 59.181 42.308 6.78 0.00 0.00 2.62
7368 8613 6.500751 TCCCTTTCCAACTATAGAGACACTTT 59.499 38.462 6.78 0.00 0.00 2.66
7369 8614 6.023603 TCCCTTTCCAACTATAGAGACACTT 58.976 40.000 6.78 0.00 0.00 3.16
7370 8615 5.422650 GTCCCTTTCCAACTATAGAGACACT 59.577 44.000 6.78 0.00 0.00 3.55
7371 8616 5.187186 TGTCCCTTTCCAACTATAGAGACAC 59.813 44.000 6.78 0.00 0.00 3.67
7372 8617 5.187186 GTGTCCCTTTCCAACTATAGAGACA 59.813 44.000 6.78 2.80 0.00 3.41
7373 8618 5.662456 GTGTCCCTTTCCAACTATAGAGAC 58.338 45.833 6.78 0.46 0.00 3.36
7374 8619 4.401519 CGTGTCCCTTTCCAACTATAGAGA 59.598 45.833 6.78 0.00 0.00 3.10
7375 8620 4.159879 ACGTGTCCCTTTCCAACTATAGAG 59.840 45.833 6.78 0.00 0.00 2.43
7376 8621 4.091549 ACGTGTCCCTTTCCAACTATAGA 58.908 43.478 6.78 0.00 0.00 1.98
7377 8622 4.467198 ACGTGTCCCTTTCCAACTATAG 57.533 45.455 0.00 0.00 0.00 1.31
7378 8623 4.895668 AACGTGTCCCTTTCCAACTATA 57.104 40.909 0.00 0.00 0.00 1.31
7379 8624 3.782656 AACGTGTCCCTTTCCAACTAT 57.217 42.857 0.00 0.00 0.00 2.12
7380 8625 3.207778 CAAACGTGTCCCTTTCCAACTA 58.792 45.455 0.00 0.00 0.00 2.24
7381 8626 2.021457 CAAACGTGTCCCTTTCCAACT 58.979 47.619 0.00 0.00 0.00 3.16
7382 8627 1.746787 ACAAACGTGTCCCTTTCCAAC 59.253 47.619 0.00 0.00 29.49 3.77
7383 8628 2.131776 ACAAACGTGTCCCTTTCCAA 57.868 45.000 0.00 0.00 29.49 3.53
7384 8629 3.886324 ACAAACGTGTCCCTTTCCA 57.114 47.368 0.00 0.00 29.49 3.53
7393 8638 4.079970 TCATCTCTAGAGGACAAACGTGT 58.920 43.478 19.67 0.00 42.10 4.49
7394 8639 4.156922 ACTCATCTCTAGAGGACAAACGTG 59.843 45.833 19.67 6.48 37.43 4.49
7395 8640 4.156922 CACTCATCTCTAGAGGACAAACGT 59.843 45.833 19.67 5.68 37.43 3.99
7396 8641 4.439426 CCACTCATCTCTAGAGGACAAACG 60.439 50.000 19.67 5.11 37.43 3.60
7397 8642 4.464597 ACCACTCATCTCTAGAGGACAAAC 59.535 45.833 19.67 0.00 37.43 2.93
7398 8643 4.678256 ACCACTCATCTCTAGAGGACAAA 58.322 43.478 19.67 0.00 37.43 2.83
7399 8644 4.323569 ACCACTCATCTCTAGAGGACAA 57.676 45.455 19.67 0.27 37.43 3.18
7400 8645 4.323569 AACCACTCATCTCTAGAGGACA 57.676 45.455 19.67 0.67 37.43 4.02
7401 8646 6.969993 AATAACCACTCATCTCTAGAGGAC 57.030 41.667 19.67 0.00 37.43 3.85
7402 8647 8.059461 TGTTAATAACCACTCATCTCTAGAGGA 58.941 37.037 19.67 9.01 37.43 3.71
7403 8648 8.138712 GTGTTAATAACCACTCATCTCTAGAGG 58.861 40.741 19.67 6.07 37.43 3.69
7404 8649 8.138712 GGTGTTAATAACCACTCATCTCTAGAG 58.861 40.741 13.98 13.98 37.65 2.43
7405 8650 7.839705 AGGTGTTAATAACCACTCATCTCTAGA 59.160 37.037 11.62 0.00 40.40 2.43
7406 8651 8.012957 AGGTGTTAATAACCACTCATCTCTAG 57.987 38.462 11.62 0.00 40.40 2.43
7407 8652 7.973048 AGGTGTTAATAACCACTCATCTCTA 57.027 36.000 11.62 0.00 40.40 2.43
7408 8653 6.875972 AGGTGTTAATAACCACTCATCTCT 57.124 37.500 11.62 0.00 40.40 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.