Multiple sequence alignment - TraesCS1A01G071700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G071700 chr1A 100.000 6685 0 0 1 6685 54028252 54021568 0.000000e+00 12345.0
1 TraesCS1A01G071700 chr1A 86.932 176 8 1 6236 6396 29215160 29215335 4.120000e-42 183.0
2 TraesCS1A01G071700 chr1A 86.932 176 8 2 6236 6396 531881883 531882058 4.120000e-42 183.0
3 TraesCS1A01G071700 chr1B 93.289 3636 158 37 476 4044 90945090 90941474 0.000000e+00 5284.0
4 TraesCS1A01G071700 chr1B 93.364 1959 84 21 4044 5970 90941376 90939432 0.000000e+00 2856.0
5 TraesCS1A01G071700 chr1B 94.521 146 7 1 6407 6551 90939161 90939016 2.430000e-54 224.0
6 TraesCS1A01G071700 chr1B 95.455 88 4 0 6597 6684 90938749 90938662 2.510000e-29 141.0
7 TraesCS1A01G071700 chr1D 96.360 2033 59 10 2013 4041 55660010 55657989 0.000000e+00 3330.0
8 TraesCS1A01G071700 chr1D 92.108 2192 93 35 4038 6178 55657865 55655703 0.000000e+00 3016.0
9 TraesCS1A01G071700 chr1D 86.459 2090 167 54 1 2012 55662144 55660093 0.000000e+00 2185.0
10 TraesCS1A01G071700 chr4B 82.998 447 49 11 3985 4427 583341534 583341111 4.890000e-101 379.0
11 TraesCS1A01G071700 chr4B 88.421 190 17 5 6397 6583 663467194 663467381 2.430000e-54 224.0
12 TraesCS1A01G071700 chr4B 95.082 61 2 1 6614 6673 663468014 663468074 1.980000e-15 95.3
13 TraesCS1A01G071700 chr4B 100.000 28 0 0 6602 6629 663467382 663467409 1.200000e-02 52.8
14 TraesCS1A01G071700 chr2B 82.743 452 47 20 3985 4431 288506353 288505928 2.280000e-99 374.0
15 TraesCS1A01G071700 chr2B 86.441 177 10 1 6236 6398 53045594 53045770 1.480000e-41 182.0
16 TraesCS1A01G071700 chr7B 83.577 274 22 8 6397 6667 586691038 586690785 1.120000e-57 235.0
17 TraesCS1A01G071700 chr7B 86.932 176 8 2 6236 6396 508656856 508657031 4.120000e-42 183.0
18 TraesCS1A01G071700 chr7D 87.429 175 8 3 6236 6396 70185106 70185280 8.850000e-44 189.0
19 TraesCS1A01G071700 chr7D 80.925 173 19 2 6236 6394 578816952 578817124 2.530000e-24 124.0
20 TraesCS1A01G071700 chr4A 87.079 178 8 2 6236 6398 666932739 666932562 3.180000e-43 187.0
21 TraesCS1A01G071700 chr6B 87.006 177 8 2 6236 6397 40492652 40492828 1.140000e-42 185.0
22 TraesCS1A01G071700 chr6B 86.932 176 8 2 6236 6396 618131143 618130968 4.120000e-42 183.0
23 TraesCS1A01G071700 chr3A 86.932 176 8 2 6236 6396 660056137 660056312 4.120000e-42 183.0
24 TraesCS1A01G071700 chrUn 84.659 176 13 4 6236 6397 340387967 340387792 5.360000e-36 163.0
25 TraesCS1A01G071700 chr5B 80.000 245 26 9 3985 4228 415053260 415053482 6.940000e-35 159.0
26 TraesCS1A01G071700 chr2D 84.302 172 12 4 6239 6396 96776826 96776656 3.230000e-33 154.0
27 TraesCS1A01G071700 chr6A 83.140 172 16 5 6238 6396 53852826 53852655 1.940000e-30 145.0
28 TraesCS1A01G071700 chr2A 82.759 174 18 3 6236 6397 624950755 624950928 1.940000e-30 145.0
29 TraesCS1A01G071700 chr3D 89.474 95 10 0 6302 6396 57174882 57174976 3.270000e-23 121.0
30 TraesCS1A01G071700 chr4D 85.981 107 6 2 6299 6397 317203040 317202935 9.170000e-19 106.0
31 TraesCS1A01G071700 chr3B 91.667 48 4 0 6347 6394 786037593 786037546 4.330000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G071700 chr1A 54021568 54028252 6684 True 12345.000000 12345 100.000000 1 6685 1 chr1A.!!$R1 6684
1 TraesCS1A01G071700 chr1B 90938662 90945090 6428 True 2126.250000 5284 94.157250 476 6684 4 chr1B.!!$R1 6208
2 TraesCS1A01G071700 chr1D 55655703 55662144 6441 True 2843.666667 3330 91.642333 1 6178 3 chr1D.!!$R1 6177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 353 0.319083 AATCGTGTGACGGCAGGTTA 59.681 50.000 0.00 0.00 42.81 2.85 F
1589 1674 0.322648 CTGCCTGGTGATCACAGACA 59.677 55.000 26.47 17.81 38.20 3.41 F
1844 1931 0.721718 GCCACGTTACAGACAGCATC 59.278 55.000 0.00 0.00 0.00 3.91 F
1875 1963 1.439353 CGTCCACTGTGCAGCTTGTT 61.439 55.000 1.29 0.00 0.00 2.83 F
1898 2004 1.542472 CAATGAGCATGACCAAGTGCA 59.458 47.619 0.00 0.00 43.63 4.57 F
3770 3973 1.667236 TGCTACTGGGCATTTCATCG 58.333 50.000 0.00 0.00 37.29 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1946 0.107263 TCAACAAGCTGCACAGTGGA 60.107 50.000 1.02 0.0 0.00 4.02 R
3126 3327 1.129811 GCCTTGTAACGTATTGCGCTT 59.870 47.619 9.73 0.0 46.11 4.68 R
3770 3973 3.321111 TGACAGTGACTCTAACCCTCAAC 59.679 47.826 0.00 0.0 0.00 3.18 R
4042 4245 5.216648 GTTCATGCAAAAAGGCTACGTTTA 58.783 37.500 0.00 0.0 34.04 2.01 R
4048 4380 6.588719 ACTTATGTTCATGCAAAAAGGCTA 57.411 33.333 0.00 0.0 34.04 3.93 R
5932 6308 0.030501 ATACCAGATCCCCGGTTCCA 60.031 55.000 0.00 0.0 36.69 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 38 4.900635 AATTGCTAATGACGGGCTTAAG 57.099 40.909 0.00 0.00 0.00 1.85
77 84 3.133721 CCTCTGCCTGCTAGTATTGTTCT 59.866 47.826 0.00 0.00 0.00 3.01
81 88 4.651778 TGCCTGCTAGTATTGTTCTTTGT 58.348 39.130 0.00 0.00 0.00 2.83
89 96 6.872020 GCTAGTATTGTTCTTTGTGACTACCA 59.128 38.462 0.00 0.00 0.00 3.25
174 182 2.349817 GCATGTTGGAACTTGTGTCTCG 60.350 50.000 0.00 0.00 36.69 4.04
185 193 0.944386 TGTGTCTCGCCTTTTTGCTC 59.056 50.000 0.00 0.00 0.00 4.26
193 201 1.598701 GCCTTTTTGCTCCAGCCGAT 61.599 55.000 0.00 0.00 41.18 4.18
211 219 3.737172 GCCGCCGTGTGCTGAAAT 61.737 61.111 0.00 0.00 38.05 2.17
225 233 5.805486 TGTGCTGAAATCGTGTATCTACTTC 59.195 40.000 0.00 0.00 0.00 3.01
228 236 6.183360 TGCTGAAATCGTGTATCTACTTCGTA 60.183 38.462 0.00 0.00 0.00 3.43
236 244 5.503683 CGTGTATCTACTTCGTAGGAACTGG 60.504 48.000 0.00 0.00 41.52 4.00
242 250 2.567615 ACTTCGTAGGAACTGGCATCTT 59.432 45.455 0.00 0.00 41.52 2.40
245 253 2.100916 TCGTAGGAACTGGCATCTTAGC 59.899 50.000 0.00 0.00 41.52 3.09
246 254 2.474816 GTAGGAACTGGCATCTTAGCG 58.525 52.381 0.00 0.00 41.52 4.26
258 266 1.374252 CTTAGCGTGCTGGAACCGT 60.374 57.895 4.25 0.00 0.00 4.83
271 279 0.874175 GAACCGTGTTTTTGGCCTGC 60.874 55.000 3.32 0.00 0.00 4.85
272 280 1.326951 AACCGTGTTTTTGGCCTGCT 61.327 50.000 3.32 0.00 0.00 4.24
273 281 1.300080 CCGTGTTTTTGGCCTGCTG 60.300 57.895 3.32 0.00 0.00 4.41
274 282 1.437160 CGTGTTTTTGGCCTGCTGT 59.563 52.632 3.32 0.00 0.00 4.40
276 284 0.530431 GTGTTTTTGGCCTGCTGTGG 60.530 55.000 3.32 0.00 0.00 4.17
307 315 5.410067 TGCATGCTAGAATTTGCTAAAACC 58.590 37.500 20.33 0.00 36.10 3.27
315 323 6.183309 AGAATTTGCTAAAACCGACATCTC 57.817 37.500 0.00 0.00 0.00 2.75
317 325 3.306917 TTGCTAAAACCGACATCTCGA 57.693 42.857 0.00 0.00 43.06 4.04
339 347 1.225376 TGTTGGAATCGTGTGACGGC 61.225 55.000 0.00 0.00 42.81 5.68
345 353 0.319083 AATCGTGTGACGGCAGGTTA 59.681 50.000 0.00 0.00 42.81 2.85
355 363 3.089784 GCAGGTTACGATGCCACG 58.910 61.111 0.00 0.00 36.41 4.94
381 390 2.802792 CAGCCATGATGCAACCGG 59.197 61.111 0.00 0.00 0.00 5.28
387 396 1.077501 ATGATGCAACCGGGACTGG 60.078 57.895 6.32 0.00 0.00 4.00
389 398 2.933287 ATGCAACCGGGACTGGGA 60.933 61.111 6.32 0.00 0.00 4.37
395 404 4.733725 CCGGGACTGGGAGGGGAA 62.734 72.222 0.00 0.00 0.00 3.97
399 408 2.692741 GACTGGGAGGGGAAGGGG 60.693 72.222 0.00 0.00 0.00 4.79
401 410 2.692741 CTGGGAGGGGAAGGGGTC 60.693 72.222 0.00 0.00 0.00 4.46
402 411 3.216371 TGGGAGGGGAAGGGGTCT 61.216 66.667 0.00 0.00 0.00 3.85
404 413 3.412408 GGAGGGGAAGGGGTCTGC 61.412 72.222 0.00 0.00 0.00 4.26
419 428 3.322706 CTGCGGGCTTTACAACGGC 62.323 63.158 0.00 0.00 0.00 5.68
428 437 0.863144 TTTACAACGGCTGCTTCGAC 59.137 50.000 5.34 0.00 0.00 4.20
433 442 2.733218 CGGCTGCTTCGACGTCAA 60.733 61.111 17.16 8.19 0.00 3.18
437 446 0.512952 GCTGCTTCGACGTCAACAAT 59.487 50.000 17.16 0.00 0.00 2.71
443 452 2.376915 TCGACGTCAACAATGTTTGC 57.623 45.000 17.16 0.00 0.00 3.68
445 454 3.124560 TCGACGTCAACAATGTTTGCTA 58.875 40.909 17.16 0.00 0.00 3.49
447 456 3.302805 CGACGTCAACAATGTTTGCTACA 60.303 43.478 17.16 0.00 41.97 2.74
453 462 3.317603 ACAATGTTTGCTACAATGGCC 57.682 42.857 0.00 0.00 41.13 5.36
454 463 2.899256 ACAATGTTTGCTACAATGGCCT 59.101 40.909 3.32 0.00 41.13 5.19
457 466 2.161855 TGTTTGCTACAATGGCCTCAG 58.838 47.619 3.32 0.00 32.64 3.35
519 532 2.202311 CTGCGATGTCGACGACGT 60.202 61.111 22.13 22.13 43.02 4.34
573 594 4.829518 CGCGCGATGACGAGGTCA 62.830 66.667 28.94 0.38 46.90 4.02
574 595 2.506217 GCGCGATGACGAGGTCAA 60.506 61.111 12.10 0.00 45.96 3.18
575 596 2.508891 GCGCGATGACGAGGTCAAG 61.509 63.158 12.10 1.96 45.96 3.02
576 597 1.154016 CGCGATGACGAGGTCAAGT 60.154 57.895 0.00 0.00 45.96 3.16
577 598 0.732880 CGCGATGACGAGGTCAAGTT 60.733 55.000 0.00 0.00 45.96 2.66
578 599 0.716108 GCGATGACGAGGTCAAGTTG 59.284 55.000 2.20 0.00 45.96 3.16
579 600 0.716108 CGATGACGAGGTCAAGTTGC 59.284 55.000 2.20 0.00 45.96 4.17
631 653 1.448717 GCGAGGGAGTGCTCTTTCC 60.449 63.158 0.00 0.00 0.00 3.13
634 656 2.172483 GAGGGAGTGCTCTTTCCGCA 62.172 60.000 0.00 0.00 34.17 5.69
648 670 2.100631 CCGCATTCACACGAGGGAC 61.101 63.158 0.00 0.00 0.00 4.46
650 672 1.080093 GCATTCACACGAGGGACGA 60.080 57.895 0.00 0.00 45.77 4.20
651 673 1.078759 GCATTCACACGAGGGACGAG 61.079 60.000 0.00 0.00 45.77 4.18
740 792 1.954146 CGGTGGTTATGATCGCGGG 60.954 63.158 6.13 0.00 0.00 6.13
768 824 2.650322 GTTGACCACCACTTTCCTTGA 58.350 47.619 0.00 0.00 0.00 3.02
770 826 1.142870 TGACCACCACTTTCCTTGAGG 59.857 52.381 0.00 0.00 0.00 3.86
919 981 1.056660 TTCCTCCACTCCACTCCAAC 58.943 55.000 0.00 0.00 0.00 3.77
923 985 2.358737 CACTCCACTCCAACCCGC 60.359 66.667 0.00 0.00 0.00 6.13
926 988 1.228124 CTCCACTCCAACCCGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
928 990 1.104577 TCCACTCCAACCCGCAAAAC 61.105 55.000 0.00 0.00 0.00 2.43
1317 1393 2.030717 CCTCGAGAAGTACATCATCCCG 60.031 54.545 15.71 0.00 0.00 5.14
1403 1479 2.381725 GGGTTCTCCGACAAGGTAAG 57.618 55.000 0.00 0.00 41.99 2.34
1409 1485 2.652095 CCGACAAGGTAAGGCGGGA 61.652 63.158 0.00 0.00 38.40 5.14
1433 1509 4.382320 GCCGGCGTCCCACTTGTA 62.382 66.667 12.58 0.00 0.00 2.41
1436 1512 1.445582 CGGCGTCCCACTTGTACTC 60.446 63.158 0.00 0.00 0.00 2.59
1474 1551 5.239087 GGCTTTTGATTTGCTCCATTTTCAA 59.761 36.000 0.00 0.00 0.00 2.69
1500 1577 6.086765 CACAAAATTTGTTATGAGTGCGACTC 59.913 38.462 8.85 8.75 43.23 3.36
1518 1596 3.252484 GGTAGCTGCGCGGTTACG 61.252 66.667 29.32 4.96 44.63 3.18
1570 1655 2.592574 TGTGCTGTGCCTGTGCTC 60.593 61.111 0.00 0.00 38.71 4.26
1576 1661 3.054503 GTGCCTGTGCTCTGCCTG 61.055 66.667 0.00 0.00 38.71 4.85
1585 1670 1.297689 GCTCTGCCTGGTGATCACA 59.702 57.895 26.47 12.17 0.00 3.58
1588 1673 0.610174 TCTGCCTGGTGATCACAGAC 59.390 55.000 26.47 14.57 38.20 3.51
1589 1674 0.322648 CTGCCTGGTGATCACAGACA 59.677 55.000 26.47 17.81 38.20 3.41
1590 1675 0.764271 TGCCTGGTGATCACAGACAA 59.236 50.000 26.47 6.91 38.20 3.18
1591 1676 1.271001 TGCCTGGTGATCACAGACAAG 60.271 52.381 26.47 14.44 38.20 3.16
1615 1700 5.008712 GGAGAAATATTTGAGGGGTAAAGCG 59.991 44.000 5.17 0.00 0.00 4.68
1619 1704 2.351706 TTTGAGGGGTAAAGCGTTGT 57.648 45.000 0.00 0.00 0.00 3.32
1620 1705 2.351706 TTGAGGGGTAAAGCGTTGTT 57.648 45.000 0.00 0.00 0.00 2.83
1651 1736 0.955919 GTGCTCTGGTGTGGTAAGGC 60.956 60.000 0.00 0.00 0.00 4.35
1696 1781 2.349590 GGGAATTGTGATTTGCTTGGC 58.650 47.619 0.00 0.00 0.00 4.52
1701 1786 4.870123 ATTGTGATTTGCTTGGCTGTTA 57.130 36.364 0.00 0.00 0.00 2.41
1721 1806 7.743400 GCTGTTAAAATTAGTTGACGACTTACC 59.257 37.037 0.00 0.00 39.86 2.85
1770 1855 8.640063 AAGATGCCATGATTAGTATATTTGCA 57.360 30.769 0.00 0.00 0.00 4.08
1771 1856 8.048534 AGATGCCATGATTAGTATATTTGCAC 57.951 34.615 0.00 0.00 0.00 4.57
1776 1863 6.349611 CCATGATTAGTATATTTGCACTGGGC 60.350 42.308 0.00 0.00 45.13 5.36
1803 1890 5.514274 TTTGCTTAAAGAGACAAACCTGG 57.486 39.130 0.00 0.00 31.23 4.45
1805 1892 4.134563 TGCTTAAAGAGACAAACCTGGTC 58.865 43.478 0.00 0.00 35.50 4.02
1844 1931 0.721718 GCCACGTTACAGACAGCATC 59.278 55.000 0.00 0.00 0.00 3.91
1856 1944 4.437587 AGCATCACAGGGGCAGGC 62.438 66.667 0.00 0.00 0.00 4.85
1858 1946 4.415150 CATCACAGGGGCAGGCGT 62.415 66.667 0.00 0.00 0.00 5.68
1873 1961 2.941333 CGTCCACTGTGCAGCTTG 59.059 61.111 1.29 0.00 0.00 4.01
1875 1963 1.439353 CGTCCACTGTGCAGCTTGTT 61.439 55.000 1.29 0.00 0.00 2.83
1898 2004 1.542472 CAATGAGCATGACCAAGTGCA 59.458 47.619 0.00 0.00 43.63 4.57
1949 2055 4.436332 CATGTTGCATGCTAGAGTGTAGA 58.564 43.478 20.33 0.00 0.00 2.59
1950 2056 4.535526 TGTTGCATGCTAGAGTGTAGAA 57.464 40.909 20.33 0.00 0.00 2.10
1956 2062 4.878397 GCATGCTAGAGTGTAGAATTGGTT 59.122 41.667 11.37 0.00 0.00 3.67
1958 2064 6.018669 GCATGCTAGAGTGTAGAATTGGTTAC 60.019 42.308 11.37 0.00 0.00 2.50
1996 2102 2.223203 GCCTCTCATGAAAATGCTCACG 60.223 50.000 0.00 0.00 0.00 4.35
1997 2103 3.005554 CCTCTCATGAAAATGCTCACGT 58.994 45.455 0.00 0.00 0.00 4.49
1998 2104 3.438087 CCTCTCATGAAAATGCTCACGTT 59.562 43.478 0.00 0.00 0.00 3.99
1999 2105 4.631377 CCTCTCATGAAAATGCTCACGTTA 59.369 41.667 0.00 0.00 0.00 3.18
2000 2106 5.220548 CCTCTCATGAAAATGCTCACGTTAG 60.221 44.000 0.00 0.00 0.00 2.34
2001 2107 4.093408 TCTCATGAAAATGCTCACGTTAGC 59.907 41.667 14.81 14.81 43.08 3.09
2002 2108 4.002982 TCATGAAAATGCTCACGTTAGCT 58.997 39.130 21.44 2.09 43.19 3.32
2003 2109 4.455533 TCATGAAAATGCTCACGTTAGCTT 59.544 37.500 21.44 13.21 43.19 3.74
2005 2111 5.277601 TGAAAATGCTCACGTTAGCTTAC 57.722 39.130 21.44 11.21 43.19 2.34
2007 2113 4.928661 AAATGCTCACGTTAGCTTACAG 57.071 40.909 21.44 0.00 43.19 2.74
2008 2114 1.710013 TGCTCACGTTAGCTTACAGC 58.290 50.000 21.44 5.31 43.19 4.40
2146 2339 1.808945 CAAGCACTAGAAGCTGTTGGG 59.191 52.381 13.65 1.30 42.53 4.12
2328 2521 9.927668 ATGTTGGAAGGTATTGTCTTTATTTTG 57.072 29.630 0.00 0.00 0.00 2.44
2330 2523 9.758651 GTTGGAAGGTATTGTCTTTATTTTGTT 57.241 29.630 0.00 0.00 0.00 2.83
2362 2558 9.701355 CTTTTTGTTACCTTTTTGTTGCTATTG 57.299 29.630 0.00 0.00 0.00 1.90
2872 3073 6.481976 TGTTCAACTTTCGCTTATCTGAAGAA 59.518 34.615 0.00 0.00 0.00 2.52
2995 3196 7.169158 TCTGTCAGACCTTTGTTTGAAAATT 57.831 32.000 0.00 0.00 37.35 1.82
2996 3197 7.610865 TCTGTCAGACCTTTGTTTGAAAATTT 58.389 30.769 0.00 0.00 37.35 1.82
2997 3198 8.093927 TCTGTCAGACCTTTGTTTGAAAATTTT 58.906 29.630 2.28 2.28 37.35 1.82
3045 3246 6.299805 ACATGACAGGTATTGTGTGATAGT 57.700 37.500 0.00 0.00 41.05 2.12
3046 3247 6.711277 ACATGACAGGTATTGTGTGATAGTT 58.289 36.000 0.00 0.00 41.05 2.24
3126 3327 2.397044 ATGGCCTTGTTGAAAAGGGA 57.603 45.000 3.32 0.00 45.91 4.20
3378 3579 6.015940 CCTTTCATGGTCAAGCTAGAAAAGTT 60.016 38.462 0.00 0.00 0.00 2.66
3447 3648 3.932822 TGCCGTAGTTTTGCTTCTCATA 58.067 40.909 0.00 0.00 0.00 2.15
3745 3948 2.636830 GTACTGGAGGTACGCACTAGA 58.363 52.381 0.00 0.00 40.90 2.43
3770 3973 1.667236 TGCTACTGGGCATTTCATCG 58.333 50.000 0.00 0.00 37.29 3.84
4085 4417 6.653020 TGAACATAAGTATTGACTGATGCCT 58.347 36.000 2.81 0.00 45.53 4.75
4259 4591 1.486211 ACAGTCCTTCTATGTCGGGG 58.514 55.000 0.00 0.00 0.00 5.73
4548 4884 1.492176 AGCCCCATACCTCAATCACTG 59.508 52.381 0.00 0.00 0.00 3.66
4588 4924 2.227388 AGTGGTCTAAACGTACACCGAG 59.773 50.000 0.00 0.00 40.70 4.63
4589 4925 2.226437 GTGGTCTAAACGTACACCGAGA 59.774 50.000 0.00 0.00 40.70 4.04
4590 4926 2.485426 TGGTCTAAACGTACACCGAGAG 59.515 50.000 0.00 0.00 40.70 3.20
4796 5147 4.642429 ACATAGAAAGCGACAAGTCCTTT 58.358 39.130 13.05 13.05 34.84 3.11
4966 5317 1.324740 CCATGCATCACCAACCAGGG 61.325 60.000 0.00 0.00 43.89 4.45
5048 5399 6.322712 TGTGAACTTTAGTGGCCTTATTTTGT 59.677 34.615 3.32 0.00 0.00 2.83
5282 5638 8.454570 TTTGGTTAACCTAAAGTTCTAAGTGG 57.545 34.615 24.78 0.00 40.05 4.00
5283 5639 5.999600 TGGTTAACCTAAAGTTCTAAGTGGC 59.000 40.000 24.78 0.00 40.05 5.01
5284 5640 5.999600 GGTTAACCTAAAGTTCTAAGTGGCA 59.000 40.000 17.83 0.00 40.05 4.92
5480 5847 7.335422 CCACTGTCTCTTAGCAGATGTTATTTT 59.665 37.037 0.00 0.00 36.62 1.82
5518 5885 6.942576 GGTTTCTAGCATGTATGATTATGGGT 59.057 38.462 0.00 0.00 0.00 4.51
5525 5892 2.108075 TGTATGATTATGGGTGCCAGGG 59.892 50.000 0.00 0.00 36.75 4.45
5527 5894 1.533187 TGATTATGGGTGCCAGGGAT 58.467 50.000 0.00 0.00 36.75 3.85
5534 5901 0.470341 GGGTGCCAGGGATTAGAGAC 59.530 60.000 0.00 0.00 0.00 3.36
5535 5902 1.501582 GGTGCCAGGGATTAGAGACT 58.498 55.000 0.00 0.00 0.00 3.24
5536 5903 2.679082 GGTGCCAGGGATTAGAGACTA 58.321 52.381 0.00 0.00 0.00 2.59
5537 5904 2.630580 GGTGCCAGGGATTAGAGACTAG 59.369 54.545 0.00 0.00 0.00 2.57
5538 5905 3.567397 GTGCCAGGGATTAGAGACTAGA 58.433 50.000 0.00 0.00 0.00 2.43
5539 5906 3.572255 GTGCCAGGGATTAGAGACTAGAG 59.428 52.174 0.00 0.00 0.00 2.43
5540 5907 3.463704 TGCCAGGGATTAGAGACTAGAGA 59.536 47.826 0.00 0.00 0.00 3.10
5541 5908 3.824443 GCCAGGGATTAGAGACTAGAGAC 59.176 52.174 0.00 0.00 0.00 3.36
5542 5909 4.069304 CCAGGGATTAGAGACTAGAGACG 58.931 52.174 0.00 0.00 0.00 4.18
5543 5910 4.445162 CCAGGGATTAGAGACTAGAGACGT 60.445 50.000 0.00 0.00 0.00 4.34
5544 5911 4.753107 CAGGGATTAGAGACTAGAGACGTC 59.247 50.000 7.70 7.70 0.00 4.34
5545 5912 4.657039 AGGGATTAGAGACTAGAGACGTCT 59.343 45.833 20.18 20.18 43.97 4.18
5546 5913 5.131475 AGGGATTAGAGACTAGAGACGTCTT 59.869 44.000 21.08 12.03 41.53 3.01
5547 5914 5.467735 GGGATTAGAGACTAGAGACGTCTTC 59.532 48.000 21.08 13.15 41.53 2.87
5563 5930 3.503891 GTCTTCTAGCTCAACGAAGGTC 58.496 50.000 12.27 5.77 35.90 3.85
5566 5933 2.366533 TCTAGCTCAACGAAGGTCGAT 58.633 47.619 4.40 0.00 43.74 3.59
5577 5944 3.198068 CGAAGGTCGATCATTGTGGAAT 58.802 45.455 0.00 0.00 43.74 3.01
5598 5965 7.070198 TGGAATGATGTGATAATTTTGGCTGAT 59.930 33.333 0.00 0.00 0.00 2.90
5601 5968 8.657074 ATGATGTGATAATTTTGGCTGATTTG 57.343 30.769 0.00 0.00 0.00 2.32
5602 5969 6.535865 TGATGTGATAATTTTGGCTGATTTGC 59.464 34.615 0.00 0.00 0.00 3.68
5606 5977 6.815142 GTGATAATTTTGGCTGATTTGCTCTT 59.185 34.615 0.00 0.00 0.00 2.85
5669 6040 2.100197 CTCGGTGTCCTCAGATGGTTA 58.900 52.381 0.00 0.00 0.00 2.85
5689 6060 7.081349 TGGTTAAGAACACTCGCATAAAAATG 58.919 34.615 0.00 0.00 0.00 2.32
5690 6061 7.041030 TGGTTAAGAACACTCGCATAAAAATGA 60.041 33.333 0.00 0.00 0.00 2.57
5691 6062 7.968405 GGTTAAGAACACTCGCATAAAAATGAT 59.032 33.333 0.00 0.00 0.00 2.45
5692 6063 8.788813 GTTAAGAACACTCGCATAAAAATGATG 58.211 33.333 0.00 0.00 0.00 3.07
5693 6064 6.500684 AGAACACTCGCATAAAAATGATGT 57.499 33.333 0.00 0.00 0.00 3.06
5694 6065 6.546395 AGAACACTCGCATAAAAATGATGTC 58.454 36.000 0.00 0.00 0.00 3.06
5695 6066 4.897224 ACACTCGCATAAAAATGATGTCG 58.103 39.130 0.00 0.00 0.00 4.35
5696 6067 4.201812 ACACTCGCATAAAAATGATGTCGG 60.202 41.667 0.00 0.00 0.00 4.79
5697 6068 4.033932 CACTCGCATAAAAATGATGTCGGA 59.966 41.667 0.00 0.00 0.00 4.55
5698 6069 4.816385 ACTCGCATAAAAATGATGTCGGAT 59.184 37.500 0.00 0.00 0.00 4.18
5712 6084 0.535328 TCGGATGGAGACCTAGAGCG 60.535 60.000 0.00 0.00 0.00 5.03
5741 6113 1.134521 TGTTCACACAGAAGAAGCGGT 60.135 47.619 0.00 0.00 36.78 5.68
5774 6146 2.009774 GATGTCGAGGTTTCCACATGG 58.990 52.381 0.00 0.00 29.43 3.66
5780 6152 1.906333 GGTTTCCACATGGCCGGTT 60.906 57.895 1.90 0.00 34.44 4.44
5806 6178 4.096382 GTGTTGACCCATCCATACAATGAC 59.904 45.833 0.00 0.00 0.00 3.06
5845 6217 0.828762 AGCCATTCTTGTTGCTGCCA 60.829 50.000 0.00 0.00 31.70 4.92
5880 6256 6.928492 GCAAAGTTGGATTTCAAGGATGTTTA 59.072 34.615 0.00 0.00 35.80 2.01
5900 6276 5.538082 TTACCTGAAACCCCCAAATGATA 57.462 39.130 0.00 0.00 0.00 2.15
5932 6308 4.287067 ACTGATGGTGACCTGTAACTTGAT 59.713 41.667 2.11 0.00 0.00 2.57
5933 6309 4.578871 TGATGGTGACCTGTAACTTGATG 58.421 43.478 2.11 0.00 0.00 3.07
5958 6334 3.441101 CCGGGGATCTGGTATTCTGATA 58.559 50.000 0.00 0.00 34.74 2.15
5959 6335 3.449018 CCGGGGATCTGGTATTCTGATAG 59.551 52.174 0.00 0.00 34.74 2.08
5962 6338 5.336849 CGGGGATCTGGTATTCTGATAGTTC 60.337 48.000 0.00 0.00 34.74 3.01
5972 6348 6.426328 GGTATTCTGATAGTTCATCTGCTTGG 59.574 42.308 0.00 0.00 34.46 3.61
5978 6354 1.627329 AGTTCATCTGCTTGGCTCTCA 59.373 47.619 0.00 0.00 0.00 3.27
5980 6356 1.565067 TCATCTGCTTGGCTCTCAGA 58.435 50.000 5.83 5.83 40.62 3.27
5981 6357 2.117051 TCATCTGCTTGGCTCTCAGAT 58.883 47.619 9.14 9.14 45.43 2.90
5983 6359 3.069300 TCATCTGCTTGGCTCTCAGATAC 59.931 47.826 12.86 0.00 43.44 2.24
5985 6361 1.406898 CTGCTTGGCTCTCAGATACGA 59.593 52.381 0.00 0.00 0.00 3.43
5995 6374 5.291178 GCTCTCAGATACGAGTACTACTCA 58.709 45.833 15.17 0.00 45.30 3.41
6013 6392 5.667539 ACTCAGCACAGAGTTGTATATGT 57.332 39.130 1.20 0.00 46.26 2.29
6037 6435 6.040209 TGTTGTAAGAAACTAAGGCCGATA 57.960 37.500 0.00 0.00 0.00 2.92
6057 6455 2.697431 TGTGCCACGCTGTAATTTTC 57.303 45.000 0.00 0.00 0.00 2.29
6082 6480 7.038048 CGGAAGATGAAGCAGCTCATATATTA 58.962 38.462 0.00 0.00 36.15 0.98
6187 6589 4.034858 CCGAAACGCTACTATCACTACAGA 59.965 45.833 0.00 0.00 0.00 3.41
6228 6630 9.702253 AATACTATCACTACATATACTGGGAGG 57.298 37.037 0.00 0.00 0.00 4.30
6229 6631 7.104974 ACTATCACTACATATACTGGGAGGT 57.895 40.000 0.00 0.00 0.00 3.85
6230 6632 7.176490 ACTATCACTACATATACTGGGAGGTC 58.824 42.308 0.00 0.00 0.00 3.85
6231 6633 4.737578 TCACTACATATACTGGGAGGTCC 58.262 47.826 0.00 0.00 0.00 4.46
6243 6645 1.044611 GGAGGTCCCAGATGCTAGAC 58.955 60.000 0.00 0.00 34.14 2.59
6244 6646 0.671251 GAGGTCCCAGATGCTAGACG 59.329 60.000 0.00 0.00 0.00 4.18
6245 6647 0.033011 AGGTCCCAGATGCTAGACGT 60.033 55.000 0.00 0.00 0.00 4.34
6246 6648 1.214673 AGGTCCCAGATGCTAGACGTA 59.785 52.381 0.00 0.00 0.00 3.57
6247 6649 1.337387 GGTCCCAGATGCTAGACGTAC 59.663 57.143 0.00 0.00 0.00 3.67
6248 6650 2.022195 GTCCCAGATGCTAGACGTACA 58.978 52.381 0.00 0.00 0.00 2.90
6250 6652 1.338337 CCCAGATGCTAGACGTACAGG 59.662 57.143 0.00 0.00 0.00 4.00
6251 6653 1.269309 CCAGATGCTAGACGTACAGGC 60.269 57.143 0.00 0.00 0.00 4.85
6253 6655 2.099921 CAGATGCTAGACGTACAGGCTT 59.900 50.000 0.00 0.00 40.13 4.35
6257 6659 3.841643 TGCTAGACGTACAGGCTTTTAC 58.158 45.455 0.00 0.00 40.13 2.01
6258 6660 3.256383 TGCTAGACGTACAGGCTTTTACA 59.744 43.478 0.00 0.00 40.13 2.41
6259 6661 3.858238 GCTAGACGTACAGGCTTTTACAG 59.142 47.826 0.00 0.00 40.13 2.74
6261 6663 2.631545 AGACGTACAGGCTTTTACAGGT 59.368 45.455 0.00 0.00 30.60 4.00
6262 6664 3.070590 AGACGTACAGGCTTTTACAGGTT 59.929 43.478 0.00 0.00 30.60 3.50
6263 6665 3.811497 GACGTACAGGCTTTTACAGGTTT 59.189 43.478 0.00 0.00 0.00 3.27
6265 6667 4.062991 CGTACAGGCTTTTACAGGTTTCT 58.937 43.478 0.00 0.00 0.00 2.52
6267 6669 5.119743 CGTACAGGCTTTTACAGGTTTCTAC 59.880 44.000 0.00 0.00 0.00 2.59
6268 6670 5.043737 ACAGGCTTTTACAGGTTTCTACA 57.956 39.130 0.00 0.00 0.00 2.74
6269 6671 5.063880 ACAGGCTTTTACAGGTTTCTACAG 58.936 41.667 0.00 0.00 0.00 2.74
6270 6672 4.455877 CAGGCTTTTACAGGTTTCTACAGG 59.544 45.833 0.00 0.00 0.00 4.00
6271 6673 3.190744 GGCTTTTACAGGTTTCTACAGGC 59.809 47.826 0.00 0.00 0.00 4.85
6272 6674 4.072839 GCTTTTACAGGTTTCTACAGGCT 58.927 43.478 0.00 0.00 0.00 4.58
6273 6675 4.154375 GCTTTTACAGGTTTCTACAGGCTC 59.846 45.833 0.00 0.00 0.00 4.70
6274 6676 3.975168 TTACAGGTTTCTACAGGCTCC 57.025 47.619 0.00 0.00 0.00 4.70
6275 6677 2.031495 ACAGGTTTCTACAGGCTCCT 57.969 50.000 0.00 0.00 0.00 3.69
6276 6678 2.339769 ACAGGTTTCTACAGGCTCCTT 58.660 47.619 0.00 0.00 0.00 3.36
6277 6679 2.303311 ACAGGTTTCTACAGGCTCCTTC 59.697 50.000 0.00 0.00 0.00 3.46
6278 6680 1.909986 AGGTTTCTACAGGCTCCTTCC 59.090 52.381 0.00 0.00 0.00 3.46
6279 6681 1.628846 GGTTTCTACAGGCTCCTTCCA 59.371 52.381 0.00 0.00 0.00 3.53
6280 6682 2.039879 GGTTTCTACAGGCTCCTTCCAA 59.960 50.000 0.00 0.00 0.00 3.53
6281 6683 3.497942 GGTTTCTACAGGCTCCTTCCAAA 60.498 47.826 0.00 0.00 0.00 3.28
6282 6684 3.418684 TTCTACAGGCTCCTTCCAAAC 57.581 47.619 0.00 0.00 0.00 2.93
6283 6685 2.621070 TCTACAGGCTCCTTCCAAACT 58.379 47.619 0.00 0.00 0.00 2.66
6284 6686 2.979678 TCTACAGGCTCCTTCCAAACTT 59.020 45.455 0.00 0.00 0.00 2.66
6285 6687 2.755952 ACAGGCTCCTTCCAAACTTT 57.244 45.000 0.00 0.00 0.00 2.66
6286 6688 2.587522 ACAGGCTCCTTCCAAACTTTC 58.412 47.619 0.00 0.00 0.00 2.62
6287 6689 2.175715 ACAGGCTCCTTCCAAACTTTCT 59.824 45.455 0.00 0.00 0.00 2.52
6288 6690 3.394606 ACAGGCTCCTTCCAAACTTTCTA 59.605 43.478 0.00 0.00 0.00 2.10
6289 6691 4.141251 ACAGGCTCCTTCCAAACTTTCTAA 60.141 41.667 0.00 0.00 0.00 2.10
6290 6692 4.827284 CAGGCTCCTTCCAAACTTTCTAAA 59.173 41.667 0.00 0.00 0.00 1.85
6291 6693 4.827835 AGGCTCCTTCCAAACTTTCTAAAC 59.172 41.667 0.00 0.00 0.00 2.01
6292 6694 4.583073 GGCTCCTTCCAAACTTTCTAAACA 59.417 41.667 0.00 0.00 0.00 2.83
6293 6695 5.507482 GGCTCCTTCCAAACTTTCTAAACAC 60.507 44.000 0.00 0.00 0.00 3.32
6294 6696 5.067283 GCTCCTTCCAAACTTTCTAAACACA 59.933 40.000 0.00 0.00 0.00 3.72
6295 6697 6.405397 GCTCCTTCCAAACTTTCTAAACACAA 60.405 38.462 0.00 0.00 0.00 3.33
6296 6698 6.859017 TCCTTCCAAACTTTCTAAACACAAC 58.141 36.000 0.00 0.00 0.00 3.32
6297 6699 5.741982 CCTTCCAAACTTTCTAAACACAACG 59.258 40.000 0.00 0.00 0.00 4.10
6298 6700 5.238006 TCCAAACTTTCTAAACACAACGG 57.762 39.130 0.00 0.00 0.00 4.44
6299 6701 4.096682 TCCAAACTTTCTAAACACAACGGG 59.903 41.667 0.00 0.00 0.00 5.28
6300 6702 4.356289 CAAACTTTCTAAACACAACGGGG 58.644 43.478 0.00 0.00 0.00 5.73
6301 6703 2.578786 ACTTTCTAAACACAACGGGGG 58.421 47.619 0.00 0.00 0.00 5.40
6302 6704 2.092267 ACTTTCTAAACACAACGGGGGT 60.092 45.455 0.00 0.00 0.00 4.95
6303 6705 1.970092 TTCTAAACACAACGGGGGTG 58.030 50.000 2.39 2.39 41.95 4.61
6304 6706 0.108963 TCTAAACACAACGGGGGTGG 59.891 55.000 8.00 0.00 40.54 4.61
6305 6707 0.891904 CTAAACACAACGGGGGTGGG 60.892 60.000 8.00 0.00 40.54 4.61
6306 6708 2.980105 TAAACACAACGGGGGTGGGC 62.980 60.000 8.00 0.00 40.54 5.36
6326 6728 2.683362 GCCTGTGCCTTTACTAATGACC 59.317 50.000 0.00 0.00 0.00 4.02
6327 6729 3.872240 GCCTGTGCCTTTACTAATGACCA 60.872 47.826 0.00 0.00 0.00 4.02
6328 6730 4.331968 CCTGTGCCTTTACTAATGACCAA 58.668 43.478 0.00 0.00 0.00 3.67
6329 6731 4.949856 CCTGTGCCTTTACTAATGACCAAT 59.050 41.667 0.00 0.00 0.00 3.16
6330 6732 5.418840 CCTGTGCCTTTACTAATGACCAATT 59.581 40.000 0.00 0.00 0.00 2.32
6331 6733 6.601613 CCTGTGCCTTTACTAATGACCAATTA 59.398 38.462 0.00 0.00 0.00 1.40
6332 6734 7.122055 CCTGTGCCTTTACTAATGACCAATTAA 59.878 37.037 0.00 0.00 30.24 1.40
6333 6735 8.410673 TGTGCCTTTACTAATGACCAATTAAA 57.589 30.769 0.00 0.00 30.24 1.52
6334 6736 8.861086 TGTGCCTTTACTAATGACCAATTAAAA 58.139 29.630 0.00 0.00 30.24 1.52
6335 6737 9.699703 GTGCCTTTACTAATGACCAATTAAAAA 57.300 29.630 0.00 0.00 30.24 1.94
6336 6738 9.699703 TGCCTTTACTAATGACCAATTAAAAAC 57.300 29.630 0.00 0.00 30.24 2.43
6337 6739 9.146984 GCCTTTACTAATGACCAATTAAAAACC 57.853 33.333 0.00 0.00 30.24 3.27
6340 6742 9.984190 TTTACTAATGACCAATTAAAAACCACC 57.016 29.630 0.00 0.00 30.24 4.61
6341 6743 7.604657 ACTAATGACCAATTAAAAACCACCA 57.395 32.000 0.00 0.00 30.24 4.17
6342 6744 7.438564 ACTAATGACCAATTAAAAACCACCAC 58.561 34.615 0.00 0.00 30.24 4.16
6343 6745 4.308899 TGACCAATTAAAAACCACCACG 57.691 40.909 0.00 0.00 0.00 4.94
6344 6746 3.952323 TGACCAATTAAAAACCACCACGA 59.048 39.130 0.00 0.00 0.00 4.35
6345 6747 4.202030 TGACCAATTAAAAACCACCACGAC 60.202 41.667 0.00 0.00 0.00 4.34
6346 6748 3.700038 ACCAATTAAAAACCACCACGACA 59.300 39.130 0.00 0.00 0.00 4.35
6347 6749 4.045783 CCAATTAAAAACCACCACGACAC 58.954 43.478 0.00 0.00 0.00 3.67
6348 6750 3.994204 ATTAAAAACCACCACGACACC 57.006 42.857 0.00 0.00 0.00 4.16
6349 6751 1.677942 TAAAAACCACCACGACACCC 58.322 50.000 0.00 0.00 0.00 4.61
6350 6752 0.033894 AAAAACCACCACGACACCCT 60.034 50.000 0.00 0.00 0.00 4.34
6351 6753 0.750182 AAAACCACCACGACACCCTG 60.750 55.000 0.00 0.00 0.00 4.45
6352 6754 1.917336 AAACCACCACGACACCCTGT 61.917 55.000 0.00 0.00 0.00 4.00
6353 6755 1.049855 AACCACCACGACACCCTGTA 61.050 55.000 0.00 0.00 0.00 2.74
6354 6756 1.049855 ACCACCACGACACCCTGTAA 61.050 55.000 0.00 0.00 0.00 2.41
6355 6757 0.107081 CCACCACGACACCCTGTAAA 59.893 55.000 0.00 0.00 0.00 2.01
6356 6758 1.223187 CACCACGACACCCTGTAAAC 58.777 55.000 0.00 0.00 0.00 2.01
6357 6759 0.107268 ACCACGACACCCTGTAAACC 59.893 55.000 0.00 0.00 0.00 3.27
6358 6760 0.604511 CCACGACACCCTGTAAACCC 60.605 60.000 0.00 0.00 0.00 4.11
6359 6761 0.604511 CACGACACCCTGTAAACCCC 60.605 60.000 0.00 0.00 0.00 4.95
6360 6762 0.765519 ACGACACCCTGTAAACCCCT 60.766 55.000 0.00 0.00 0.00 4.79
6361 6763 0.036671 CGACACCCTGTAAACCCCTC 60.037 60.000 0.00 0.00 0.00 4.30
6362 6764 1.061546 GACACCCTGTAAACCCCTCA 58.938 55.000 0.00 0.00 0.00 3.86
6363 6765 1.633945 GACACCCTGTAAACCCCTCAT 59.366 52.381 0.00 0.00 0.00 2.90
6364 6766 2.041216 GACACCCTGTAAACCCCTCATT 59.959 50.000 0.00 0.00 0.00 2.57
6365 6767 2.041216 ACACCCTGTAAACCCCTCATTC 59.959 50.000 0.00 0.00 0.00 2.67
6366 6768 1.639108 ACCCTGTAAACCCCTCATTCC 59.361 52.381 0.00 0.00 0.00 3.01
6367 6769 1.923148 CCCTGTAAACCCCTCATTCCT 59.077 52.381 0.00 0.00 0.00 3.36
6368 6770 2.357154 CCCTGTAAACCCCTCATTCCTG 60.357 54.545 0.00 0.00 0.00 3.86
6369 6771 2.308866 CCTGTAAACCCCTCATTCCTGT 59.691 50.000 0.00 0.00 0.00 4.00
6370 6772 3.521937 CCTGTAAACCCCTCATTCCTGTA 59.478 47.826 0.00 0.00 0.00 2.74
6371 6773 4.018779 CCTGTAAACCCCTCATTCCTGTAA 60.019 45.833 0.00 0.00 0.00 2.41
6372 6774 4.913784 TGTAAACCCCTCATTCCTGTAAC 58.086 43.478 0.00 0.00 0.00 2.50
6373 6775 4.351407 TGTAAACCCCTCATTCCTGTAACA 59.649 41.667 0.00 0.00 0.00 2.41
6374 6776 4.675063 AAACCCCTCATTCCTGTAACAT 57.325 40.909 0.00 0.00 0.00 2.71
6375 6777 3.933861 ACCCCTCATTCCTGTAACATC 57.066 47.619 0.00 0.00 0.00 3.06
6376 6778 2.509964 ACCCCTCATTCCTGTAACATCC 59.490 50.000 0.00 0.00 0.00 3.51
6377 6779 2.780010 CCCCTCATTCCTGTAACATCCT 59.220 50.000 0.00 0.00 0.00 3.24
6378 6780 3.434167 CCCCTCATTCCTGTAACATCCTG 60.434 52.174 0.00 0.00 0.00 3.86
6379 6781 3.200825 CCCTCATTCCTGTAACATCCTGT 59.799 47.826 0.00 0.00 0.00 4.00
6380 6782 4.408921 CCCTCATTCCTGTAACATCCTGTA 59.591 45.833 0.00 0.00 0.00 2.74
6381 6783 5.360591 CCTCATTCCTGTAACATCCTGTAC 58.639 45.833 0.00 0.00 0.00 2.90
6382 6784 5.006153 TCATTCCTGTAACATCCTGTACG 57.994 43.478 0.00 0.00 0.00 3.67
6383 6785 4.464951 TCATTCCTGTAACATCCTGTACGT 59.535 41.667 0.00 0.00 0.00 3.57
6384 6786 3.861276 TCCTGTAACATCCTGTACGTG 57.139 47.619 0.00 0.00 0.00 4.49
6385 6787 3.159472 TCCTGTAACATCCTGTACGTGT 58.841 45.455 0.00 0.00 0.00 4.49
6386 6788 4.334552 TCCTGTAACATCCTGTACGTGTA 58.665 43.478 0.00 0.00 0.00 2.90
6387 6789 4.397103 TCCTGTAACATCCTGTACGTGTAG 59.603 45.833 0.00 0.00 0.00 2.74
6388 6790 4.100707 TGTAACATCCTGTACGTGTAGC 57.899 45.455 0.00 0.00 0.00 3.58
6389 6791 3.506844 TGTAACATCCTGTACGTGTAGCA 59.493 43.478 0.00 0.00 0.00 3.49
6390 6792 3.671008 AACATCCTGTACGTGTAGCAA 57.329 42.857 0.00 0.00 0.00 3.91
6391 6793 3.671008 ACATCCTGTACGTGTAGCAAA 57.329 42.857 0.00 0.00 0.00 3.68
6392 6794 3.585862 ACATCCTGTACGTGTAGCAAAG 58.414 45.455 0.00 0.00 0.00 2.77
6393 6795 2.074547 TCCTGTACGTGTAGCAAAGC 57.925 50.000 0.00 0.00 0.00 3.51
6394 6796 1.616865 TCCTGTACGTGTAGCAAAGCT 59.383 47.619 0.00 0.00 43.41 3.74
6395 6797 1.993370 CCTGTACGTGTAGCAAAGCTC 59.007 52.381 0.00 0.00 40.44 4.09
6396 6798 2.609491 CCTGTACGTGTAGCAAAGCTCA 60.609 50.000 0.00 0.00 40.44 4.26
6397 6799 3.057019 CTGTACGTGTAGCAAAGCTCAA 58.943 45.455 0.00 0.00 40.44 3.02
6398 6800 3.459145 TGTACGTGTAGCAAAGCTCAAA 58.541 40.909 0.00 0.00 40.44 2.69
6399 6801 4.062293 TGTACGTGTAGCAAAGCTCAAAT 58.938 39.130 0.00 0.00 40.44 2.32
6400 6802 3.542712 ACGTGTAGCAAAGCTCAAATG 57.457 42.857 0.00 0.00 40.44 2.32
6401 6803 3.138304 ACGTGTAGCAAAGCTCAAATGA 58.862 40.909 0.00 0.00 40.44 2.57
6402 6804 3.187227 ACGTGTAGCAAAGCTCAAATGAG 59.813 43.478 6.05 6.05 44.75 2.90
6403 6805 3.433274 CGTGTAGCAAAGCTCAAATGAGA 59.567 43.478 14.43 0.00 44.74 3.27
6404 6806 4.435253 CGTGTAGCAAAGCTCAAATGAGAG 60.435 45.833 14.43 0.00 44.74 3.20
6452 6854 0.966179 GTAAGTGGGCCCAGTTTTGG 59.034 55.000 42.51 0.00 44.60 3.28
6473 6875 0.668535 GATGGCGGTTCTAAATGGGC 59.331 55.000 0.00 0.00 0.00 5.36
6478 6880 2.361789 GCGGTTCTAAATGGGCTTGTA 58.638 47.619 0.00 0.00 0.00 2.41
6479 6881 2.354821 GCGGTTCTAAATGGGCTTGTAG 59.645 50.000 0.00 0.00 0.00 2.74
6523 6926 0.111442 CTGTTTTGGCGTACGTGTCG 60.111 55.000 17.90 4.29 0.00 4.35
6551 6954 0.389166 CTCTGGTCTGCCGTTCACTC 60.389 60.000 0.00 0.00 37.67 3.51
6553 6956 0.668706 CTGGTCTGCCGTTCACTCTG 60.669 60.000 0.00 0.00 37.67 3.35
6554 6957 1.367840 GGTCTGCCGTTCACTCTGT 59.632 57.895 0.00 0.00 0.00 3.41
6567 7212 4.634184 TCACTCTGTCGATAGTTTAGGC 57.366 45.455 9.16 0.00 37.40 3.93
6568 7213 4.014406 TCACTCTGTCGATAGTTTAGGCA 58.986 43.478 9.16 0.00 37.40 4.75
6667 7312 2.242708 TCTCACCCCTCTACCTCTCTTC 59.757 54.545 0.00 0.00 0.00 2.87
6671 7316 0.938192 CCCTCTACCTCTCTTCCCCT 59.062 60.000 0.00 0.00 0.00 4.79
6673 7318 1.477923 CCTCTACCTCTCTTCCCCTCG 60.478 61.905 0.00 0.00 0.00 4.63
6679 7324 0.753848 CTCTCTTCCCCTCGGGTCTC 60.754 65.000 0.55 0.00 44.74 3.36
6684 7329 2.829458 CCCCTCGGGTCTCGTCTC 60.829 72.222 0.55 0.00 38.25 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 26 1.511305 CTCGAGCTTAAGCCCGTCA 59.489 57.895 27.33 11.33 42.96 4.35
68 75 6.653320 TCCATGGTAGTCACAAAGAACAATAC 59.347 38.462 12.58 0.00 0.00 1.89
77 84 2.105649 TGTGCTCCATGGTAGTCACAAA 59.894 45.455 22.89 12.00 32.17 2.83
81 88 1.644509 AGTGTGCTCCATGGTAGTCA 58.355 50.000 12.58 5.08 0.00 3.41
89 96 3.603532 CACAGACAATAGTGTGCTCCAT 58.396 45.455 0.00 0.00 42.41 3.41
145 153 1.743623 TTCCAACATGCCGCGTAGG 60.744 57.895 4.92 0.00 44.97 3.18
152 160 1.956477 AGACACAAGTTCCAACATGCC 59.044 47.619 0.00 0.00 31.23 4.40
153 161 2.349817 CGAGACACAAGTTCCAACATGC 60.350 50.000 0.00 0.00 31.23 4.06
156 164 1.295792 GCGAGACACAAGTTCCAACA 58.704 50.000 0.00 0.00 0.00 3.33
174 182 1.598701 ATCGGCTGGAGCAAAAAGGC 61.599 55.000 0.20 0.00 44.36 4.35
225 233 2.474816 GCTAAGATGCCAGTTCCTACG 58.525 52.381 0.00 0.00 0.00 3.51
228 236 0.905357 ACGCTAAGATGCCAGTTCCT 59.095 50.000 0.00 0.00 0.00 3.36
236 244 0.375106 GTTCCAGCACGCTAAGATGC 59.625 55.000 0.00 0.00 42.39 3.91
242 250 2.048597 CACGGTTCCAGCACGCTA 60.049 61.111 0.00 0.00 0.00 4.26
245 253 0.099791 AAAAACACGGTTCCAGCACG 59.900 50.000 0.00 0.00 0.00 5.34
246 254 1.555477 CAAAAACACGGTTCCAGCAC 58.445 50.000 0.00 0.00 0.00 4.40
258 266 1.821936 CCACAGCAGGCCAAAAACA 59.178 52.632 5.01 0.00 0.00 2.83
284 292 5.410067 GGTTTTAGCAAATTCTAGCATGCA 58.590 37.500 21.98 5.01 41.18 3.96
292 300 5.163854 CGAGATGTCGGTTTTAGCAAATTCT 60.164 40.000 3.96 0.00 42.87 2.40
315 323 2.065512 TCACACGATTCCAACATGTCG 58.934 47.619 0.00 0.00 39.78 4.35
317 325 1.798223 CGTCACACGATTCCAACATGT 59.202 47.619 0.00 0.00 46.05 3.21
339 347 2.461110 GCCGTGGCATCGTAACCTG 61.461 63.158 5.89 0.00 41.49 4.00
365 373 2.440796 CCCGGTTGCATCATGGCT 60.441 61.111 0.00 0.00 34.04 4.75
366 374 2.440065 TCCCGGTTGCATCATGGC 60.440 61.111 0.00 0.00 0.00 4.40
381 390 2.692741 CCCTTCCCCTCCCAGTCC 60.693 72.222 0.00 0.00 0.00 3.85
387 396 3.412408 GCAGACCCCTTCCCCTCC 61.412 72.222 0.00 0.00 0.00 4.30
393 402 2.193087 TAAAGCCCGCAGACCCCTTC 62.193 60.000 0.00 0.00 0.00 3.46
394 403 2.228480 TAAAGCCCGCAGACCCCTT 61.228 57.895 0.00 0.00 0.00 3.95
395 404 2.609610 TAAAGCCCGCAGACCCCT 60.610 61.111 0.00 0.00 0.00 4.79
399 408 1.495951 CGTTGTAAAGCCCGCAGAC 59.504 57.895 0.00 0.00 0.00 3.51
401 410 2.867472 CCGTTGTAAAGCCCGCAG 59.133 61.111 0.00 0.00 0.00 5.18
402 411 3.358707 GCCGTTGTAAAGCCCGCA 61.359 61.111 0.00 0.00 0.00 5.69
404 413 2.867472 CAGCCGTTGTAAAGCCCG 59.133 61.111 0.00 0.00 0.00 6.13
419 428 1.526887 ACATTGTTGACGTCGAAGCAG 59.473 47.619 7.17 1.20 0.00 4.24
428 437 4.382457 CCATTGTAGCAAACATTGTTGACG 59.618 41.667 2.13 0.00 37.63 4.35
430 439 4.305769 GCCATTGTAGCAAACATTGTTGA 58.694 39.130 2.13 0.00 37.63 3.18
431 440 3.432933 GGCCATTGTAGCAAACATTGTTG 59.567 43.478 2.13 0.00 37.63 3.33
432 441 3.324556 AGGCCATTGTAGCAAACATTGTT 59.675 39.130 5.01 0.00 37.63 2.83
433 442 2.899256 AGGCCATTGTAGCAAACATTGT 59.101 40.909 5.01 0.00 37.63 2.71
437 446 2.161855 CTGAGGCCATTGTAGCAAACA 58.838 47.619 5.01 0.00 35.88 2.83
443 452 2.785868 GCACCTGAGGCCATTGTAG 58.214 57.895 5.01 0.00 0.00 2.74
462 471 2.124736 ATCCCCGTTGCCATCACG 60.125 61.111 0.00 0.00 0.00 4.35
530 543 2.107953 GGTCCATCTCTGGCGAGC 59.892 66.667 0.00 0.00 42.80 5.03
537 550 3.461773 CACGCGGGGTCCATCTCT 61.462 66.667 12.47 0.00 0.00 3.10
562 575 1.291877 GCGCAACTTGACCTCGTCAT 61.292 55.000 0.30 0.00 42.40 3.06
566 579 4.430423 GCGCGCAACTTGACCTCG 62.430 66.667 29.10 0.00 0.00 4.63
613 634 1.448717 GGAAAGAGCACTCCCTCGC 60.449 63.158 0.00 0.00 36.95 5.03
626 648 0.443869 CCTCGTGTGAATGCGGAAAG 59.556 55.000 0.00 0.00 0.00 2.62
627 649 0.953471 CCCTCGTGTGAATGCGGAAA 60.953 55.000 0.00 0.00 0.00 3.13
631 653 2.444624 CGTCCCTCGTGTGAATGCG 61.445 63.158 0.00 0.00 34.52 4.73
634 656 0.611062 TCCTCGTCCCTCGTGTGAAT 60.611 55.000 0.00 0.00 40.80 2.57
648 670 0.036765 TCCCAACCGTTTGATCCTCG 60.037 55.000 0.00 0.00 34.24 4.63
650 672 1.354368 ACATCCCAACCGTTTGATCCT 59.646 47.619 0.00 0.00 34.24 3.24
651 673 1.834188 ACATCCCAACCGTTTGATCC 58.166 50.000 0.00 0.00 34.24 3.36
704 748 3.063084 GTCGACCGGCCAGACTCT 61.063 66.667 3.51 0.00 32.58 3.24
725 769 0.104120 CTCACCCGCGATCATAACCA 59.896 55.000 8.23 0.00 0.00 3.67
880 942 3.984186 CTGGCGGGGAGGGAGAAGA 62.984 68.421 0.00 0.00 0.00 2.87
919 981 0.882474 TCGGGTATTTGTTTTGCGGG 59.118 50.000 0.00 0.00 0.00 6.13
923 985 2.095617 GTCGGGTCGGGTATTTGTTTTG 60.096 50.000 0.00 0.00 0.00 2.44
926 988 0.390209 CGTCGGGTCGGGTATTTGTT 60.390 55.000 0.00 0.00 0.00 2.83
928 990 2.169146 GCGTCGGGTCGGGTATTTG 61.169 63.158 0.00 0.00 0.00 2.32
1213 1289 1.933041 CGACCACTATCGCGTCGTG 60.933 63.158 5.77 11.76 43.29 4.35
1433 1509 2.113139 CCCGGGCAACAGTTGAGT 59.887 61.111 17.99 0.00 39.74 3.41
1474 1551 5.685511 GTCGCACTCATAACAAATTTTGTGT 59.314 36.000 15.17 6.03 44.59 3.72
1570 1655 0.322648 TGTCTGTGATCACCAGGCAG 59.677 55.000 22.85 13.01 0.00 4.85
1576 1661 3.685139 TTCTCCTTGTCTGTGATCACC 57.315 47.619 22.85 8.43 0.00 4.02
1585 1670 5.254032 ACCCCTCAAATATTTCTCCTTGTCT 59.746 40.000 0.00 0.00 0.00 3.41
1588 1673 7.416777 GCTTTACCCCTCAAATATTTCTCCTTG 60.417 40.741 0.00 0.00 0.00 3.61
1589 1674 6.607600 GCTTTACCCCTCAAATATTTCTCCTT 59.392 38.462 0.00 0.00 0.00 3.36
1590 1675 6.129874 GCTTTACCCCTCAAATATTTCTCCT 58.870 40.000 0.00 0.00 0.00 3.69
1591 1676 5.008712 CGCTTTACCCCTCAAATATTTCTCC 59.991 44.000 0.00 0.00 0.00 3.71
1615 1700 3.628017 AGCACAAATTCGCAGTAACAAC 58.372 40.909 0.00 0.00 0.00 3.32
1619 1704 2.483877 CCAGAGCACAAATTCGCAGTAA 59.516 45.455 0.00 0.00 0.00 2.24
1620 1705 2.076100 CCAGAGCACAAATTCGCAGTA 58.924 47.619 0.00 0.00 0.00 2.74
1651 1736 0.976641 TCAGTTCACACCCAGCCTAG 59.023 55.000 0.00 0.00 0.00 3.02
1696 1781 8.985805 AGGTAAGTCGTCAACTAATTTTAACAG 58.014 33.333 0.00 0.00 37.17 3.16
1701 1786 9.511144 CAAAAAGGTAAGTCGTCAACTAATTTT 57.489 29.630 0.00 0.00 37.17 1.82
1721 1806 0.388907 CACTGGATGCCCGCAAAAAG 60.389 55.000 0.00 0.00 34.29 2.27
1770 1855 2.080654 TTAAGCAAAACAGGCCCAGT 57.919 45.000 0.00 0.00 0.00 4.00
1771 1856 2.627699 TCTTTAAGCAAAACAGGCCCAG 59.372 45.455 0.00 0.00 0.00 4.45
1776 1863 5.748630 GGTTTGTCTCTTTAAGCAAAACAGG 59.251 40.000 6.68 0.00 38.00 4.00
1803 1890 3.339141 CTTAAGCCCTCAACCTCAAGAC 58.661 50.000 0.00 0.00 0.00 3.01
1805 1892 2.716217 CCTTAAGCCCTCAACCTCAAG 58.284 52.381 0.00 0.00 0.00 3.02
1829 1916 1.995484 CCTGTGATGCTGTCTGTAACG 59.005 52.381 0.00 0.00 0.00 3.18
1856 1944 1.439353 AACAAGCTGCACAGTGGACG 61.439 55.000 1.02 0.00 0.00 4.79
1858 1946 0.107263 TCAACAAGCTGCACAGTGGA 60.107 50.000 1.02 0.00 0.00 4.02
1873 1961 3.254166 ACTTGGTCATGCTCATTGTCAAC 59.746 43.478 0.00 0.00 0.00 3.18
1875 1963 2.815503 CACTTGGTCATGCTCATTGTCA 59.184 45.455 0.00 0.00 0.00 3.58
1949 2055 5.008613 CACACAAGTACAGCAGTAACCAATT 59.991 40.000 0.00 0.00 30.67 2.32
1950 2056 4.515191 CACACAAGTACAGCAGTAACCAAT 59.485 41.667 0.00 0.00 30.67 3.16
1956 2062 2.479837 GCACACACAAGTACAGCAGTA 58.520 47.619 0.00 0.00 0.00 2.74
1958 2064 0.588252 GGCACACACAAGTACAGCAG 59.412 55.000 0.00 0.00 0.00 4.24
2001 2107 5.049954 ACAAAAATGCAATGCAAGCTGTAAG 60.050 36.000 13.45 0.48 43.62 2.34
2002 2108 4.815308 ACAAAAATGCAATGCAAGCTGTAA 59.185 33.333 13.45 0.00 43.62 2.41
2003 2109 4.378774 ACAAAAATGCAATGCAAGCTGTA 58.621 34.783 13.45 2.07 43.62 2.74
2005 2111 3.889196 ACAAAAATGCAATGCAAGCTG 57.111 38.095 13.45 9.97 43.62 4.24
2007 2113 5.406175 TCTTCTACAAAAATGCAATGCAAGC 59.594 36.000 13.45 7.49 43.62 4.01
2008 2114 7.591006 ATCTTCTACAAAAATGCAATGCAAG 57.409 32.000 13.45 2.94 43.62 4.01
2009 2115 9.656040 AATATCTTCTACAAAAATGCAATGCAA 57.344 25.926 13.45 0.00 43.62 4.08
2010 2116 9.656040 AAATATCTTCTACAAAAATGCAATGCA 57.344 25.926 11.44 11.44 44.86 3.96
2053 2242 5.636123 ACCAAATATACCCAAACACACAGA 58.364 37.500 0.00 0.00 0.00 3.41
2054 2243 5.975693 ACCAAATATACCCAAACACACAG 57.024 39.130 0.00 0.00 0.00 3.66
2055 2244 7.232188 TCTTACCAAATATACCCAAACACACA 58.768 34.615 0.00 0.00 0.00 3.72
2056 2245 7.690952 TCTTACCAAATATACCCAAACACAC 57.309 36.000 0.00 0.00 0.00 3.82
2146 2339 6.043411 GTCTGGTATGACTTCCATCTTACAC 58.957 44.000 0.00 0.00 36.71 2.90
2336 2532 9.701355 CAATAGCAACAAAAAGGTAACAAAAAG 57.299 29.630 0.00 0.00 41.41 2.27
2351 2547 9.787532 GCATAAGAAATAAGACAATAGCAACAA 57.212 29.630 0.00 0.00 0.00 2.83
2362 2558 7.816640 TGTGAAGGTTGCATAAGAAATAAGAC 58.183 34.615 0.00 0.00 0.00 3.01
2829 3029 5.592054 TGAACAAAAATGTATGCGTGGAAA 58.408 33.333 0.00 0.00 0.00 3.13
2995 3196 9.581289 TGACTTAGATAATTGGAGGTTGAAAAA 57.419 29.630 0.00 0.00 0.00 1.94
2996 3197 9.581289 TTGACTTAGATAATTGGAGGTTGAAAA 57.419 29.630 0.00 0.00 0.00 2.29
2997 3198 9.010029 GTTGACTTAGATAATTGGAGGTTGAAA 57.990 33.333 0.00 0.00 0.00 2.69
3045 3246 8.832735 ACTGGATAGTTAATTCCTCCAAAGTAA 58.167 33.333 4.45 0.00 35.67 2.24
3046 3247 8.388656 ACTGGATAGTTAATTCCTCCAAAGTA 57.611 34.615 4.45 0.00 35.67 2.24
3126 3327 1.129811 GCCTTGTAACGTATTGCGCTT 59.870 47.619 9.73 0.00 46.11 4.68
3378 3579 7.915293 TGTAACAAGTGAAAGTGAAAGAGAA 57.085 32.000 0.00 0.00 0.00 2.87
3764 3967 3.830178 TGACTCTAACCCTCAACGATGAA 59.170 43.478 0.00 0.00 34.49 2.57
3770 3973 3.321111 TGACAGTGACTCTAACCCTCAAC 59.679 47.826 0.00 0.00 0.00 3.18
4037 4240 8.894731 TCATGCAAAAAGGCTACGTTTATTATA 58.105 29.630 0.00 0.00 34.04 0.98
4038 4241 7.767261 TCATGCAAAAAGGCTACGTTTATTAT 58.233 30.769 0.00 0.00 34.04 1.28
4039 4242 7.147143 TCATGCAAAAAGGCTACGTTTATTA 57.853 32.000 0.00 0.00 34.04 0.98
4040 4243 6.019779 TCATGCAAAAAGGCTACGTTTATT 57.980 33.333 0.00 0.00 34.04 1.40
4041 4244 5.637006 TCATGCAAAAAGGCTACGTTTAT 57.363 34.783 0.00 0.00 34.04 1.40
4042 4245 5.216648 GTTCATGCAAAAAGGCTACGTTTA 58.783 37.500 0.00 0.00 34.04 2.01
4048 4380 6.588719 ACTTATGTTCATGCAAAAAGGCTA 57.411 33.333 0.00 0.00 34.04 3.93
4059 4391 7.228108 AGGCATCAGTCAATACTTATGTTCATG 59.772 37.037 0.00 0.00 38.87 3.07
4109 4441 0.261991 TCCTAGGTAGACCCTGCCAG 59.738 60.000 9.08 0.00 45.81 4.85
4480 4812 0.976641 AGATTGACCGGTGCTGAGAA 59.023 50.000 14.63 0.00 0.00 2.87
4588 4924 1.222936 CTGCATCCCTGTGACCCTC 59.777 63.158 0.00 0.00 0.00 4.30
4589 4925 1.136329 AACTGCATCCCTGTGACCCT 61.136 55.000 0.00 0.00 0.00 4.34
4590 4926 0.251341 AAACTGCATCCCTGTGACCC 60.251 55.000 0.00 0.00 0.00 4.46
4591 4927 1.270550 CAAAACTGCATCCCTGTGACC 59.729 52.381 0.00 0.00 0.00 4.02
4592 4928 1.270550 CCAAAACTGCATCCCTGTGAC 59.729 52.381 0.00 0.00 0.00 3.67
4593 4929 1.619654 CCAAAACTGCATCCCTGTGA 58.380 50.000 0.00 0.00 0.00 3.58
4594 4930 0.604578 CCCAAAACTGCATCCCTGTG 59.395 55.000 0.00 0.00 0.00 3.66
4595 4931 1.187567 GCCCAAAACTGCATCCCTGT 61.188 55.000 0.00 0.00 0.00 4.00
4711 5054 9.613428 TTAATTGATGGTTCACTTATAGTCCTG 57.387 33.333 0.00 0.00 30.04 3.86
4755 5106 0.911769 TAGGGATGCAAGTGGACTGG 59.088 55.000 0.00 0.00 0.00 4.00
4860 5211 3.066760 ACTTAACTGTGCTTTGGCTCAAC 59.933 43.478 0.00 0.00 40.67 3.18
4966 5317 7.750229 TGAAAGCCCATGATATAACATTCTC 57.250 36.000 0.00 0.00 0.00 2.87
5132 5483 2.231235 ACCATCATTTCGGGCAAGAAAC 59.769 45.455 9.08 0.00 42.12 2.78
5260 5616 5.999600 TGCCACTTAGAACTTTAGGTTAACC 59.000 40.000 17.41 17.41 38.41 2.85
5276 5632 7.039293 TCAGTTCTAGTAATCTTGTGCCACTTA 60.039 37.037 0.00 0.00 0.00 2.24
5282 5638 7.659652 AACTTCAGTTCTAGTAATCTTGTGC 57.340 36.000 0.00 0.00 31.64 4.57
5396 5763 0.035152 GATGAGCACACATGACCCCA 60.035 55.000 0.00 0.00 0.00 4.96
5480 5847 7.669722 ACATGCTAGAAACCCTTCTTTTGATAA 59.330 33.333 0.00 0.00 42.17 1.75
5518 5885 3.463704 TCTCTAGTCTCTAATCCCTGGCA 59.536 47.826 0.00 0.00 0.00 4.92
5534 5901 4.260051 CGTTGAGCTAGAAGACGTCTCTAG 60.260 50.000 28.90 28.90 37.84 2.43
5535 5902 3.617706 CGTTGAGCTAGAAGACGTCTCTA 59.382 47.826 20.33 18.75 37.84 2.43
5536 5903 2.417239 CGTTGAGCTAGAAGACGTCTCT 59.583 50.000 20.33 18.64 37.84 3.10
5537 5904 2.415857 TCGTTGAGCTAGAAGACGTCTC 59.584 50.000 20.33 12.36 37.84 3.36
5538 5905 2.424557 TCGTTGAGCTAGAAGACGTCT 58.575 47.619 13.58 13.58 40.71 4.18
5539 5906 2.896243 TCGTTGAGCTAGAAGACGTC 57.104 50.000 7.70 7.70 35.42 4.34
5540 5907 2.095161 CCTTCGTTGAGCTAGAAGACGT 60.095 50.000 17.14 0.00 42.75 4.34
5541 5908 2.095161 ACCTTCGTTGAGCTAGAAGACG 60.095 50.000 17.14 10.07 42.75 4.18
5542 5909 3.503891 GACCTTCGTTGAGCTAGAAGAC 58.496 50.000 17.14 10.06 42.75 3.01
5543 5910 2.161808 CGACCTTCGTTGAGCTAGAAGA 59.838 50.000 17.14 2.30 42.75 2.87
5544 5911 2.161808 TCGACCTTCGTTGAGCTAGAAG 59.838 50.000 11.51 11.51 41.35 2.85
5545 5912 2.156917 TCGACCTTCGTTGAGCTAGAA 58.843 47.619 0.00 0.00 41.35 2.10
5546 5913 1.817357 TCGACCTTCGTTGAGCTAGA 58.183 50.000 0.00 0.00 41.35 2.43
5547 5914 2.097629 TGATCGACCTTCGTTGAGCTAG 59.902 50.000 0.00 0.00 39.22 3.42
5577 5944 6.535865 GCAAATCAGCCAAAATTATCACATCA 59.464 34.615 0.00 0.00 0.00 3.07
5587 5954 3.332034 GCAAGAGCAAATCAGCCAAAAT 58.668 40.909 0.00 0.00 41.58 1.82
5606 5977 4.067896 GAGACCTTTGTTCAAGATCTGCA 58.932 43.478 0.00 0.00 35.14 4.41
5669 6040 6.913170 ACATCATTTTTATGCGAGTGTTCTT 58.087 32.000 0.00 0.00 0.00 2.52
5689 6060 2.817258 CTCTAGGTCTCCATCCGACATC 59.183 54.545 0.00 0.00 33.11 3.06
5690 6061 2.870175 CTCTAGGTCTCCATCCGACAT 58.130 52.381 0.00 0.00 33.11 3.06
5691 6062 1.751032 GCTCTAGGTCTCCATCCGACA 60.751 57.143 0.00 0.00 33.11 4.35
5692 6063 0.955905 GCTCTAGGTCTCCATCCGAC 59.044 60.000 0.00 0.00 0.00 4.79
5693 6064 0.535328 CGCTCTAGGTCTCCATCCGA 60.535 60.000 0.00 0.00 0.00 4.55
5694 6065 1.519751 CCGCTCTAGGTCTCCATCCG 61.520 65.000 0.00 0.00 0.00 4.18
5695 6066 1.182385 CCCGCTCTAGGTCTCCATCC 61.182 65.000 0.00 0.00 0.00 3.51
5696 6067 0.468400 ACCCGCTCTAGGTCTCCATC 60.468 60.000 0.00 0.00 28.99 3.51
5697 6068 1.621377 ACCCGCTCTAGGTCTCCAT 59.379 57.895 0.00 0.00 28.99 3.41
5698 6069 3.097293 ACCCGCTCTAGGTCTCCA 58.903 61.111 0.00 0.00 28.99 3.86
5712 6084 5.305585 TCTTCTGTGTGAACAATAAGACCC 58.694 41.667 0.00 0.00 0.00 4.46
5749 6121 1.696832 GGAAACCTCGACATCTGCGC 61.697 60.000 0.00 0.00 0.00 6.09
5761 6133 2.035626 CCGGCCATGTGGAAACCT 59.964 61.111 2.24 0.00 37.39 3.50
5774 6146 3.292159 GGTCAACACCCAACCGGC 61.292 66.667 0.00 0.00 36.54 6.13
5806 6178 1.822613 CATACTGCCTGCTGCTGGG 60.823 63.158 24.37 15.88 42.74 4.45
5819 6191 4.637534 CAGCAACAAGAATGGCTACATACT 59.362 41.667 0.00 0.00 35.94 2.12
5820 6192 4.731773 GCAGCAACAAGAATGGCTACATAC 60.732 45.833 0.00 0.00 35.94 2.39
5833 6205 1.538047 ATACACCTGGCAGCAACAAG 58.462 50.000 9.56 0.00 0.00 3.16
5845 6217 3.688694 TCCAACTTTGCGTATACACCT 57.311 42.857 3.32 0.00 0.00 4.00
5880 6256 3.596046 TCTATCATTTGGGGGTTTCAGGT 59.404 43.478 0.00 0.00 0.00 4.00
5900 6276 6.139671 ACAGGTCACCATCAGTATATTCTCT 58.860 40.000 0.00 0.00 0.00 3.10
5920 6296 2.356135 CCGGTTCCATCAAGTTACAGG 58.644 52.381 0.00 0.00 0.00 4.00
5932 6308 0.030501 ATACCAGATCCCCGGTTCCA 60.031 55.000 0.00 0.00 36.69 3.53
5933 6309 1.071857 GAATACCAGATCCCCGGTTCC 59.928 57.143 0.00 0.00 36.69 3.62
5958 6334 1.627329 TGAGAGCCAAGCAGATGAACT 59.373 47.619 0.00 0.00 0.00 3.01
5959 6335 2.008329 CTGAGAGCCAAGCAGATGAAC 58.992 52.381 0.00 0.00 0.00 3.18
5962 6338 2.623878 ATCTGAGAGCCAAGCAGATG 57.376 50.000 0.00 0.00 45.02 2.90
5972 6348 5.834239 GAGTAGTACTCGTATCTGAGAGC 57.166 47.826 14.40 0.00 39.35 4.09
5983 6359 7.044025 ACAACTCTGTGCTGAGTAGTACTCG 62.044 48.000 22.30 17.83 45.49 4.18
5985 6361 4.145807 ACAACTCTGTGCTGAGTAGTACT 58.854 43.478 1.37 1.37 45.49 2.73
5995 6374 5.997746 ACAACAACATATACAACTCTGTGCT 59.002 36.000 0.00 0.00 36.96 4.40
6009 6388 6.148150 CGGCCTTAGTTTCTTACAACAACATA 59.852 38.462 0.00 0.00 0.00 2.29
6010 6389 5.048991 CGGCCTTAGTTTCTTACAACAACAT 60.049 40.000 0.00 0.00 0.00 2.71
6011 6390 4.273969 CGGCCTTAGTTTCTTACAACAACA 59.726 41.667 0.00 0.00 0.00 3.33
6012 6391 4.512571 TCGGCCTTAGTTTCTTACAACAAC 59.487 41.667 0.00 0.00 0.00 3.32
6013 6392 4.706035 TCGGCCTTAGTTTCTTACAACAA 58.294 39.130 0.00 0.00 0.00 2.83
6037 6435 2.414029 CGAAAATTACAGCGTGGCACAT 60.414 45.455 19.09 2.02 44.52 3.21
6057 6455 1.950828 ATGAGCTGCTTCATCTTCCG 58.049 50.000 2.53 0.00 32.42 4.30
6094 6492 7.462731 TGACAAAATGCATTCTTCACAAAAAC 58.537 30.769 13.38 0.00 0.00 2.43
6097 6495 5.754406 CCTGACAAAATGCATTCTTCACAAA 59.246 36.000 13.38 0.00 0.00 2.83
6224 6626 1.044611 GTCTAGCATCTGGGACCTCC 58.955 60.000 0.00 0.00 0.00 4.30
6225 6627 0.671251 CGTCTAGCATCTGGGACCTC 59.329 60.000 0.00 0.00 0.00 3.85
6226 6628 0.033011 ACGTCTAGCATCTGGGACCT 60.033 55.000 0.00 0.00 0.00 3.85
6228 6630 2.022195 TGTACGTCTAGCATCTGGGAC 58.978 52.381 0.00 0.00 0.00 4.46
6229 6631 2.298610 CTGTACGTCTAGCATCTGGGA 58.701 52.381 0.00 0.00 0.00 4.37
6230 6632 1.338337 CCTGTACGTCTAGCATCTGGG 59.662 57.143 0.00 0.00 0.00 4.45
6231 6633 1.269309 GCCTGTACGTCTAGCATCTGG 60.269 57.143 0.00 0.00 0.00 3.86
6232 6634 1.678627 AGCCTGTACGTCTAGCATCTG 59.321 52.381 0.00 0.00 0.00 2.90
6233 6635 2.060050 AGCCTGTACGTCTAGCATCT 57.940 50.000 0.00 0.00 0.00 2.90
6234 6636 2.873133 AAGCCTGTACGTCTAGCATC 57.127 50.000 0.00 0.00 0.00 3.91
6235 6637 3.611766 AAAAGCCTGTACGTCTAGCAT 57.388 42.857 0.00 0.00 0.00 3.79
6237 6639 3.841643 TGTAAAAGCCTGTACGTCTAGC 58.158 45.455 0.00 0.00 0.00 3.42
6238 6640 4.082354 ACCTGTAAAAGCCTGTACGTCTAG 60.082 45.833 0.00 0.00 0.00 2.43
6239 6641 3.828451 ACCTGTAAAAGCCTGTACGTCTA 59.172 43.478 0.00 0.00 0.00 2.59
6240 6642 2.631545 ACCTGTAAAAGCCTGTACGTCT 59.368 45.455 0.00 0.00 0.00 4.18
6241 6643 3.036075 ACCTGTAAAAGCCTGTACGTC 57.964 47.619 0.00 0.00 0.00 4.34
6243 6645 4.062991 AGAAACCTGTAAAAGCCTGTACG 58.937 43.478 0.00 0.00 0.00 3.67
6244 6646 5.993441 TGTAGAAACCTGTAAAAGCCTGTAC 59.007 40.000 0.00 0.00 0.00 2.90
6245 6647 6.177310 TGTAGAAACCTGTAAAAGCCTGTA 57.823 37.500 0.00 0.00 0.00 2.74
6246 6648 5.043737 TGTAGAAACCTGTAAAAGCCTGT 57.956 39.130 0.00 0.00 0.00 4.00
6247 6649 4.455877 CCTGTAGAAACCTGTAAAAGCCTG 59.544 45.833 0.00 0.00 0.00 4.85
6248 6650 4.652822 CCTGTAGAAACCTGTAAAAGCCT 58.347 43.478 0.00 0.00 0.00 4.58
6250 6652 4.072839 AGCCTGTAGAAACCTGTAAAAGC 58.927 43.478 0.00 0.00 0.00 3.51
6251 6653 4.695928 GGAGCCTGTAGAAACCTGTAAAAG 59.304 45.833 0.00 0.00 0.00 2.27
6253 6655 3.908103 AGGAGCCTGTAGAAACCTGTAAA 59.092 43.478 0.00 0.00 0.00 2.01
6257 6659 2.355209 GGAAGGAGCCTGTAGAAACCTG 60.355 54.545 0.00 0.00 0.00 4.00
6258 6660 1.909986 GGAAGGAGCCTGTAGAAACCT 59.090 52.381 0.00 0.00 0.00 3.50
6259 6661 1.628846 TGGAAGGAGCCTGTAGAAACC 59.371 52.381 0.00 0.00 0.00 3.27
6261 6663 3.394606 AGTTTGGAAGGAGCCTGTAGAAA 59.605 43.478 0.00 0.00 0.00 2.52
6262 6664 2.979678 AGTTTGGAAGGAGCCTGTAGAA 59.020 45.455 0.00 0.00 0.00 2.10
6263 6665 2.621070 AGTTTGGAAGGAGCCTGTAGA 58.379 47.619 0.00 0.00 0.00 2.59
6265 6667 3.394606 AGAAAGTTTGGAAGGAGCCTGTA 59.605 43.478 0.00 0.00 0.00 2.74
6267 6669 2.868899 AGAAAGTTTGGAAGGAGCCTG 58.131 47.619 0.00 0.00 0.00 4.85
6268 6670 4.724279 TTAGAAAGTTTGGAAGGAGCCT 57.276 40.909 0.00 0.00 0.00 4.58
6269 6671 4.583073 TGTTTAGAAAGTTTGGAAGGAGCC 59.417 41.667 0.00 0.00 0.00 4.70
6270 6672 5.067283 TGTGTTTAGAAAGTTTGGAAGGAGC 59.933 40.000 0.00 0.00 0.00 4.70
6271 6673 6.693315 TGTGTTTAGAAAGTTTGGAAGGAG 57.307 37.500 0.00 0.00 0.00 3.69
6272 6674 6.403855 CGTTGTGTTTAGAAAGTTTGGAAGGA 60.404 38.462 0.00 0.00 0.00 3.36
6273 6675 5.741982 CGTTGTGTTTAGAAAGTTTGGAAGG 59.258 40.000 0.00 0.00 0.00 3.46
6274 6676 5.741982 CCGTTGTGTTTAGAAAGTTTGGAAG 59.258 40.000 0.00 0.00 0.00 3.46
6275 6677 5.393243 CCCGTTGTGTTTAGAAAGTTTGGAA 60.393 40.000 0.00 0.00 0.00 3.53
6276 6678 4.096682 CCCGTTGTGTTTAGAAAGTTTGGA 59.903 41.667 0.00 0.00 0.00 3.53
6277 6679 4.356289 CCCGTTGTGTTTAGAAAGTTTGG 58.644 43.478 0.00 0.00 0.00 3.28
6278 6680 4.356289 CCCCGTTGTGTTTAGAAAGTTTG 58.644 43.478 0.00 0.00 0.00 2.93
6279 6681 3.382227 CCCCCGTTGTGTTTAGAAAGTTT 59.618 43.478 0.00 0.00 0.00 2.66
6280 6682 2.953648 CCCCCGTTGTGTTTAGAAAGTT 59.046 45.455 0.00 0.00 0.00 2.66
6281 6683 2.092267 ACCCCCGTTGTGTTTAGAAAGT 60.092 45.455 0.00 0.00 0.00 2.66
6282 6684 2.292292 CACCCCCGTTGTGTTTAGAAAG 59.708 50.000 0.00 0.00 0.00 2.62
6283 6685 2.299521 CACCCCCGTTGTGTTTAGAAA 58.700 47.619 0.00 0.00 0.00 2.52
6284 6686 1.477195 CCACCCCCGTTGTGTTTAGAA 60.477 52.381 0.00 0.00 31.71 2.10
6285 6687 0.108963 CCACCCCCGTTGTGTTTAGA 59.891 55.000 0.00 0.00 31.71 2.10
6286 6688 0.891904 CCCACCCCCGTTGTGTTTAG 60.892 60.000 0.00 0.00 31.71 1.85
6287 6689 1.150992 CCCACCCCCGTTGTGTTTA 59.849 57.895 0.00 0.00 31.71 2.01
6288 6690 2.123640 CCCACCCCCGTTGTGTTT 60.124 61.111 0.00 0.00 31.71 2.83
6289 6691 4.906537 GCCCACCCCCGTTGTGTT 62.907 66.667 0.00 0.00 31.71 3.32
6305 6707 2.683362 GGTCATTAGTAAAGGCACAGGC 59.317 50.000 0.00 0.00 40.13 4.85
6306 6708 3.950397 TGGTCATTAGTAAAGGCACAGG 58.050 45.455 0.00 0.00 0.00 4.00
6307 6709 6.515272 AATTGGTCATTAGTAAAGGCACAG 57.485 37.500 0.00 0.00 0.00 3.66
6308 6710 8.410673 TTTAATTGGTCATTAGTAAAGGCACA 57.589 30.769 0.00 0.00 0.00 4.57
6309 6711 9.699703 TTTTTAATTGGTCATTAGTAAAGGCAC 57.300 29.630 0.00 0.00 0.00 5.01
6310 6712 9.699703 GTTTTTAATTGGTCATTAGTAAAGGCA 57.300 29.630 0.00 0.00 0.00 4.75
6311 6713 9.146984 GGTTTTTAATTGGTCATTAGTAAAGGC 57.853 33.333 0.00 0.00 0.00 4.35
6314 6716 9.984190 GGTGGTTTTTAATTGGTCATTAGTAAA 57.016 29.630 0.00 0.00 0.00 2.01
6315 6717 9.144298 TGGTGGTTTTTAATTGGTCATTAGTAA 57.856 29.630 0.00 0.00 0.00 2.24
6316 6718 8.578151 GTGGTGGTTTTTAATTGGTCATTAGTA 58.422 33.333 0.00 0.00 0.00 1.82
6317 6719 7.438564 GTGGTGGTTTTTAATTGGTCATTAGT 58.561 34.615 0.00 0.00 0.00 2.24
6318 6720 6.584563 CGTGGTGGTTTTTAATTGGTCATTAG 59.415 38.462 0.00 0.00 0.00 1.73
6319 6721 6.264744 TCGTGGTGGTTTTTAATTGGTCATTA 59.735 34.615 0.00 0.00 0.00 1.90
6320 6722 5.069251 TCGTGGTGGTTTTTAATTGGTCATT 59.931 36.000 0.00 0.00 0.00 2.57
6321 6723 4.585162 TCGTGGTGGTTTTTAATTGGTCAT 59.415 37.500 0.00 0.00 0.00 3.06
6322 6724 3.952323 TCGTGGTGGTTTTTAATTGGTCA 59.048 39.130 0.00 0.00 0.00 4.02
6323 6725 4.202030 TGTCGTGGTGGTTTTTAATTGGTC 60.202 41.667 0.00 0.00 0.00 4.02
6324 6726 3.700038 TGTCGTGGTGGTTTTTAATTGGT 59.300 39.130 0.00 0.00 0.00 3.67
6325 6727 4.045783 GTGTCGTGGTGGTTTTTAATTGG 58.954 43.478 0.00 0.00 0.00 3.16
6326 6728 4.045783 GGTGTCGTGGTGGTTTTTAATTG 58.954 43.478 0.00 0.00 0.00 2.32
6327 6729 3.068448 GGGTGTCGTGGTGGTTTTTAATT 59.932 43.478 0.00 0.00 0.00 1.40
6328 6730 2.624364 GGGTGTCGTGGTGGTTTTTAAT 59.376 45.455 0.00 0.00 0.00 1.40
6329 6731 2.022934 GGGTGTCGTGGTGGTTTTTAA 58.977 47.619 0.00 0.00 0.00 1.52
6330 6732 1.212441 AGGGTGTCGTGGTGGTTTTTA 59.788 47.619 0.00 0.00 0.00 1.52
6331 6733 0.033894 AGGGTGTCGTGGTGGTTTTT 60.034 50.000 0.00 0.00 0.00 1.94
6332 6734 0.750182 CAGGGTGTCGTGGTGGTTTT 60.750 55.000 0.00 0.00 0.00 2.43
6333 6735 1.153046 CAGGGTGTCGTGGTGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
6334 6736 1.049855 TACAGGGTGTCGTGGTGGTT 61.050 55.000 0.00 0.00 33.45 3.67
6335 6737 1.049855 TTACAGGGTGTCGTGGTGGT 61.050 55.000 0.00 0.00 33.45 4.16
6336 6738 0.107081 TTTACAGGGTGTCGTGGTGG 59.893 55.000 0.00 0.00 33.45 4.61
6337 6739 1.223187 GTTTACAGGGTGTCGTGGTG 58.777 55.000 0.00 0.00 33.45 4.17
6338 6740 0.107268 GGTTTACAGGGTGTCGTGGT 59.893 55.000 0.00 0.00 33.45 4.16
6339 6741 0.604511 GGGTTTACAGGGTGTCGTGG 60.605 60.000 0.00 0.00 33.45 4.94
6340 6742 0.604511 GGGGTTTACAGGGTGTCGTG 60.605 60.000 0.00 0.00 35.14 4.35
6341 6743 0.765519 AGGGGTTTACAGGGTGTCGT 60.766 55.000 0.00 0.00 0.00 4.34
6342 6744 0.036671 GAGGGGTTTACAGGGTGTCG 60.037 60.000 0.00 0.00 0.00 4.35
6343 6745 1.061546 TGAGGGGTTTACAGGGTGTC 58.938 55.000 0.00 0.00 0.00 3.67
6344 6746 1.755200 ATGAGGGGTTTACAGGGTGT 58.245 50.000 0.00 0.00 0.00 4.16
6345 6747 2.620627 GGAATGAGGGGTTTACAGGGTG 60.621 54.545 0.00 0.00 0.00 4.61
6346 6748 1.639108 GGAATGAGGGGTTTACAGGGT 59.361 52.381 0.00 0.00 0.00 4.34
6347 6749 1.923148 AGGAATGAGGGGTTTACAGGG 59.077 52.381 0.00 0.00 0.00 4.45
6348 6750 2.308866 ACAGGAATGAGGGGTTTACAGG 59.691 50.000 0.00 0.00 0.00 4.00
6349 6751 3.721087 ACAGGAATGAGGGGTTTACAG 57.279 47.619 0.00 0.00 0.00 2.74
6350 6752 4.351407 TGTTACAGGAATGAGGGGTTTACA 59.649 41.667 0.00 0.00 0.00 2.41
6351 6753 4.913784 TGTTACAGGAATGAGGGGTTTAC 58.086 43.478 0.00 0.00 0.00 2.01
6352 6754 5.339695 GGATGTTACAGGAATGAGGGGTTTA 60.340 44.000 0.00 0.00 0.00 2.01
6353 6755 4.569865 GGATGTTACAGGAATGAGGGGTTT 60.570 45.833 0.00 0.00 0.00 3.27
6354 6756 3.053619 GGATGTTACAGGAATGAGGGGTT 60.054 47.826 0.00 0.00 0.00 4.11
6355 6757 2.509964 GGATGTTACAGGAATGAGGGGT 59.490 50.000 0.00 0.00 0.00 4.95
6356 6758 2.780010 AGGATGTTACAGGAATGAGGGG 59.220 50.000 0.00 0.00 0.00 4.79
6357 6759 3.813443 CAGGATGTTACAGGAATGAGGG 58.187 50.000 0.00 0.00 0.00 4.30
6369 6771 8.459621 AGCTTTGCTACACGTACAGGATGTTA 62.460 42.308 0.00 0.00 42.80 2.41
6370 6772 7.756778 AGCTTTGCTACACGTACAGGATGTT 62.757 44.000 0.00 0.00 42.80 2.71
6371 6773 6.362100 AGCTTTGCTACACGTACAGGATGT 62.362 45.833 0.00 0.00 46.30 3.06
6372 6774 2.348666 GCTTTGCTACACGTACAGGATG 59.651 50.000 0.00 0.00 46.00 3.51
6373 6775 2.233922 AGCTTTGCTACACGTACAGGAT 59.766 45.455 0.00 0.00 36.99 3.24
6374 6776 1.616865 AGCTTTGCTACACGTACAGGA 59.383 47.619 0.00 0.00 36.99 3.86
6375 6777 1.993370 GAGCTTTGCTACACGTACAGG 59.007 52.381 0.00 0.00 39.88 4.00
6376 6778 2.672714 TGAGCTTTGCTACACGTACAG 58.327 47.619 0.00 0.00 39.88 2.74
6377 6779 2.804697 TGAGCTTTGCTACACGTACA 57.195 45.000 0.00 0.00 39.88 2.90
6378 6780 4.151689 TCATTTGAGCTTTGCTACACGTAC 59.848 41.667 0.00 0.00 39.88 3.67
6379 6781 4.311606 TCATTTGAGCTTTGCTACACGTA 58.688 39.130 0.00 0.00 39.88 3.57
6380 6782 3.138304 TCATTTGAGCTTTGCTACACGT 58.862 40.909 0.00 0.00 39.88 4.49
6381 6783 3.433274 TCTCATTTGAGCTTTGCTACACG 59.567 43.478 2.60 0.00 39.88 4.49
6382 6784 4.967437 CTCTCATTTGAGCTTTGCTACAC 58.033 43.478 2.60 0.00 39.88 2.90
6393 6795 2.666619 GCACCAAACGCTCTCATTTGAG 60.667 50.000 0.97 0.97 43.36 3.02
6394 6796 1.266718 GCACCAAACGCTCTCATTTGA 59.733 47.619 0.00 0.00 37.91 2.69
6395 6797 1.001487 TGCACCAAACGCTCTCATTTG 60.001 47.619 0.00 0.00 35.89 2.32
6396 6798 1.317613 TGCACCAAACGCTCTCATTT 58.682 45.000 0.00 0.00 0.00 2.32
6397 6799 1.470098 GATGCACCAAACGCTCTCATT 59.530 47.619 0.00 0.00 0.00 2.57
6398 6800 1.089920 GATGCACCAAACGCTCTCAT 58.910 50.000 0.00 0.00 0.00 2.90
6399 6801 1.291184 CGATGCACCAAACGCTCTCA 61.291 55.000 0.00 0.00 0.00 3.27
6400 6802 1.421485 CGATGCACCAAACGCTCTC 59.579 57.895 0.00 0.00 0.00 3.20
6401 6803 2.034879 CCGATGCACCAAACGCTCT 61.035 57.895 0.00 0.00 0.00 4.09
6402 6804 2.480555 CCGATGCACCAAACGCTC 59.519 61.111 0.00 0.00 0.00 5.03
6403 6805 3.055719 CCCGATGCACCAAACGCT 61.056 61.111 0.00 0.00 0.00 5.07
6404 6806 4.114997 CCCCGATGCACCAAACGC 62.115 66.667 0.00 0.00 0.00 4.84
6405 6807 4.114997 GCCCCGATGCACCAAACG 62.115 66.667 0.00 0.00 0.00 3.60
6452 6854 1.318576 CCATTTAGAACCGCCATCCC 58.681 55.000 0.00 0.00 0.00 3.85
6454 6856 0.668535 GCCCATTTAGAACCGCCATC 59.331 55.000 0.00 0.00 0.00 3.51
6473 6875 1.369625 GCCACGAATGACCCTACAAG 58.630 55.000 0.00 0.00 0.00 3.16
6478 6880 2.671070 CAGGCCACGAATGACCCT 59.329 61.111 5.01 0.00 0.00 4.34
6479 6881 3.134127 GCAGGCCACGAATGACCC 61.134 66.667 5.01 0.00 0.00 4.46
6523 6926 3.325753 AGACCAGAGGCACCCAGC 61.326 66.667 0.00 0.00 44.65 4.85
6551 6954 2.120232 CGCTGCCTAAACTATCGACAG 58.880 52.381 0.00 0.00 0.00 3.51
6553 6956 1.488527 CCGCTGCCTAAACTATCGAC 58.511 55.000 0.00 0.00 0.00 4.20
6554 6957 0.249322 GCCGCTGCCTAAACTATCGA 60.249 55.000 0.00 0.00 0.00 3.59
6587 7232 3.869272 CTCATCCGCAGTTGCCGC 61.869 66.667 0.00 0.00 37.91 6.53
6588 7233 2.125552 TCTCATCCGCAGTTGCCG 60.126 61.111 0.00 0.00 37.91 5.69
6589 7234 0.674895 AACTCTCATCCGCAGTTGCC 60.675 55.000 0.00 0.00 37.91 4.52
6590 7235 0.723981 GAACTCTCATCCGCAGTTGC 59.276 55.000 0.00 0.00 30.32 4.17
6591 7236 1.728971 GTGAACTCTCATCCGCAGTTG 59.271 52.381 0.00 0.00 33.05 3.16
6592 7237 1.670087 CGTGAACTCTCATCCGCAGTT 60.670 52.381 0.00 0.00 33.05 3.16
6593 7238 0.109086 CGTGAACTCTCATCCGCAGT 60.109 55.000 0.00 0.00 33.05 4.40
6594 7239 0.109086 ACGTGAACTCTCATCCGCAG 60.109 55.000 0.00 0.00 33.05 5.18
6595 7240 0.109272 GACGTGAACTCTCATCCGCA 60.109 55.000 0.00 0.00 33.05 5.69
6596 7241 0.802607 GGACGTGAACTCTCATCCGC 60.803 60.000 0.00 0.00 33.05 5.54
6597 7242 0.523546 CGGACGTGAACTCTCATCCG 60.524 60.000 0.00 2.41 43.93 4.18
6598 7243 0.526662 ACGGACGTGAACTCTCATCC 59.473 55.000 0.00 0.00 33.05 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.