Multiple sequence alignment - TraesCS1A01G070900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G070900 chr1A 100.000 4840 0 0 1 4840 53673437 53678276 0.000000e+00 8938.0
1 TraesCS1A01G070900 chr1B 91.563 3212 179 43 227 3404 90311046 90314199 0.000000e+00 4346.0
2 TraesCS1A01G070900 chr1B 92.257 452 18 8 3462 3910 90314207 90314644 4.110000e-175 625.0
3 TraesCS1A01G070900 chr1B 86.290 496 57 7 3908 4396 90314802 90315293 3.320000e-146 529.0
4 TraesCS1A01G070900 chr1D 91.147 3242 188 37 220 3404 54336858 54340057 0.000000e+00 4305.0
5 TraesCS1A01G070900 chr1D 89.599 1096 101 10 3493 4581 54340076 54341165 0.000000e+00 1380.0
6 TraesCS1A01G070900 chr1D 89.691 97 8 1 1 95 54336757 54336853 6.580000e-24 122.0
7 TraesCS1A01G070900 chr1D 90.000 90 7 1 97 184 491411906 491411995 1.100000e-21 115.0
8 TraesCS1A01G070900 chr1D 87.255 102 10 2 85 184 247303442 247303342 3.960000e-21 113.0
9 TraesCS1A01G070900 chr1D 94.595 37 2 0 186 222 40169166 40169202 1.880000e-04 58.4
10 TraesCS1A01G070900 chr4A 81.048 1546 182 67 1882 3356 605025828 605027333 0.000000e+00 1129.0
11 TraesCS1A01G070900 chr4A 83.034 501 56 16 3493 3980 605027437 605027921 1.240000e-115 427.0
12 TraesCS1A01G070900 chr4A 80.601 366 57 8 1489 1849 605025289 605025645 2.220000e-68 270.0
13 TraesCS1A01G070900 chr4A 76.531 294 57 10 4187 4476 642408813 642409098 3.020000e-32 150.0
14 TraesCS1A01G070900 chr4A 84.906 106 7 9 963 1061 605024308 605024411 1.110000e-16 99.0
15 TraesCS1A01G070900 chr5D 79.720 1573 175 80 1877 3363 556867527 556866013 0.000000e+00 1005.0
16 TraesCS1A01G070900 chr5D 84.009 469 52 12 3533 3989 556865723 556865266 3.460000e-116 429.0
17 TraesCS1A01G070900 chr5D 81.105 344 53 7 1516 1859 556868044 556867713 1.030000e-66 265.0
18 TraesCS1A01G070900 chr5D 80.816 245 36 10 4189 4427 316241035 316240796 1.070000e-41 182.0
19 TraesCS1A01G070900 chr5D 83.962 106 8 9 963 1061 556869156 556869053 5.160000e-15 93.5
20 TraesCS1A01G070900 chr5B 79.808 1144 154 47 1877 2976 710186799 710187909 0.000000e+00 761.0
21 TraesCS1A01G070900 chr5B 84.565 460 50 11 3533 3980 710188576 710189026 2.070000e-118 436.0
22 TraesCS1A01G070900 chr5B 83.390 295 38 6 1458 1747 710186225 710186513 3.710000e-66 263.0
23 TraesCS1A01G070900 chr2D 79.251 347 66 6 4184 4527 522138685 522139028 2.250000e-58 237.0
24 TraesCS1A01G070900 chr2D 77.811 338 69 6 4192 4526 156043266 156043600 2.280000e-48 204.0
25 TraesCS1A01G070900 chr2D 90.110 91 7 1 96 184 165780062 165779972 3.060000e-22 117.0
26 TraesCS1A01G070900 chr2D 90.000 90 7 1 97 184 165939150 165939239 1.100000e-21 115.0
27 TraesCS1A01G070900 chr2A 85.417 144 15 4 4190 4329 712549500 712549641 1.400000e-30 145.0
28 TraesCS1A01G070900 chr7B 85.417 144 9 7 4190 4326 726892371 726892509 6.530000e-29 139.0
29 TraesCS1A01G070900 chr7B 78.409 176 35 3 4400 4573 732436321 732436147 1.420000e-20 111.0
30 TraesCS1A01G070900 chr7B 97.222 36 1 0 186 221 198868679 198868644 1.450000e-05 62.1
31 TraesCS1A01G070900 chr7B 94.872 39 2 0 186 224 578598823 578598785 1.450000e-05 62.1
32 TraesCS1A01G070900 chr7B 97.059 34 1 0 186 219 396216014 396216047 1.880000e-04 58.4
33 TraesCS1A01G070900 chr6B 84.768 151 10 10 4187 4329 712187449 712187304 6.530000e-29 139.0
34 TraesCS1A01G070900 chr6B 92.222 90 5 1 97 184 679279867 679279778 5.090000e-25 126.0
35 TraesCS1A01G070900 chr6B 78.409 176 34 4 4400 4573 178666369 178666542 1.420000e-20 111.0
36 TraesCS1A01G070900 chr6B 87.273 55 5 2 4044 4097 613599143 613599196 1.450000e-05 62.1
37 TraesCS1A01G070900 chr3A 90.426 94 6 2 93 184 200806300 200806208 2.370000e-23 121.0
38 TraesCS1A01G070900 chr4B 90.000 90 7 1 97 184 483266540 483266451 1.100000e-21 115.0
39 TraesCS1A01G070900 chr4B 97.143 35 1 0 186 220 580380333 580380299 5.230000e-05 60.2
40 TraesCS1A01G070900 chr2B 85.981 107 12 2 81 184 478189621 478189727 1.420000e-20 111.0
41 TraesCS1A01G070900 chr2B 87.000 100 10 2 87 184 800062808 800062906 5.120000e-20 110.0
42 TraesCS1A01G070900 chr2B 100.000 33 0 0 186 218 299102912 299102944 1.450000e-05 62.1
43 TraesCS1A01G070900 chr6D 77.714 175 36 3 4400 4573 472760712 472760540 2.380000e-18 104.0
44 TraesCS1A01G070900 chr6D 89.091 55 4 2 4044 4097 408938406 408938459 3.130000e-07 67.6
45 TraesCS1A01G070900 chr6D 90.244 41 4 0 4400 4440 472761981 472761941 2.000000e-03 54.7
46 TraesCS1A01G070900 chr4D 97.222 36 1 0 186 221 181538003 181538038 1.450000e-05 62.1
47 TraesCS1A01G070900 chr3D 100.000 33 0 0 186 218 518062391 518062359 1.450000e-05 62.1
48 TraesCS1A01G070900 chr3B 97.222 36 1 0 186 221 509559144 509559109 1.450000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G070900 chr1A 53673437 53678276 4839 False 8938.000000 8938 100.000000 1 4840 1 chr1A.!!$F1 4839
1 TraesCS1A01G070900 chr1B 90311046 90315293 4247 False 1833.333333 4346 90.036667 227 4396 3 chr1B.!!$F1 4169
2 TraesCS1A01G070900 chr1D 54336757 54341165 4408 False 1935.666667 4305 90.145667 1 4581 3 chr1D.!!$F3 4580
3 TraesCS1A01G070900 chr4A 605024308 605027921 3613 False 481.250000 1129 82.397250 963 3980 4 chr4A.!!$F2 3017
4 TraesCS1A01G070900 chr5D 556865266 556869156 3890 True 448.125000 1005 82.199000 963 3989 4 chr5D.!!$R2 3026
5 TraesCS1A01G070900 chr5B 710186225 710189026 2801 False 486.666667 761 82.587667 1458 3980 3 chr5B.!!$F1 2522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.037139 ATGGCGTGCAACCGTAGTTA 60.037 50.0 0.00 0.00 33.27 2.24 F
653 657 0.109597 CAAGTGAAAGCGACCATGGC 60.110 55.0 13.04 3.65 0.00 4.40 F
954 976 0.463833 CCGGCCAGGTGTTCTATTCC 60.464 60.0 2.24 0.00 34.51 3.01 F
1292 1426 0.753111 GGGCCAGCCTGACTTATTGG 60.753 60.0 4.39 0.00 36.10 3.16 F
2233 3056 1.052124 AGGTCACCCAAGAACCGTCA 61.052 55.0 0.00 0.00 0.00 4.35 F
3304 4360 0.804989 GAGCCCAACATTCTGTTCGG 59.195 55.0 0.00 0.00 40.86 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 1215 0.250858 CCACCTGACTGACATGGCAA 60.251 55.000 1.11 0.0 0.00 4.52 R
1839 2477 1.000717 GTACCGTTGCTGTTGCCATTT 60.001 47.619 0.00 0.0 38.71 2.32 R
2932 3826 1.068679 GCCAGCAGCTTTTCAGAGTTC 60.069 52.381 0.00 0.0 38.99 3.01 R
3017 4040 0.185175 AGGGAGGAAACAACCCACAC 59.815 55.000 0.00 0.0 46.94 3.82 R
3491 4566 1.135489 CATGTGCAGCACCAGATTCAC 60.135 52.381 23.06 0.0 32.73 3.18 R
4652 6069 0.035630 AGCACAGATCCTTGCAGACC 60.036 55.000 16.34 0.0 41.48 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.037139 ATGGCGTGCAACCGTAGTTA 60.037 50.000 0.00 0.00 33.27 2.24
49 50 0.037139 TGGCGTGCAACCGTAGTTAT 60.037 50.000 0.00 0.00 33.27 1.89
50 51 0.372334 GGCGTGCAACCGTAGTTATG 59.628 55.000 0.00 0.00 33.27 1.90
52 53 1.727880 GCGTGCAACCGTAGTTATGAA 59.272 47.619 0.00 0.00 33.27 2.57
58 61 3.255725 CAACCGTAGTTATGAAGCCGAA 58.744 45.455 0.00 0.00 33.27 4.30
64 67 3.314541 AGTTATGAAGCCGAAGAACGT 57.685 42.857 0.00 0.00 40.78 3.99
95 98 6.255020 ACTGTAGTTACACGTGAAAAAGACAG 59.745 38.462 25.01 26.20 36.39 3.51
96 99 6.101332 TGTAGTTACACGTGAAAAAGACAGT 58.899 36.000 25.01 0.00 0.00 3.55
100 103 6.474751 AGTTACACGTGAAAAAGACAGTACTC 59.525 38.462 25.01 0.62 0.00 2.59
101 104 4.117685 ACACGTGAAAAAGACAGTACTCC 58.882 43.478 25.01 0.00 0.00 3.85
102 105 3.493503 CACGTGAAAAAGACAGTACTCCC 59.506 47.826 10.90 0.00 0.00 4.30
103 106 3.387050 ACGTGAAAAAGACAGTACTCCCT 59.613 43.478 0.00 0.00 0.00 4.20
104 107 4.141779 ACGTGAAAAAGACAGTACTCCCTT 60.142 41.667 0.00 0.00 0.00 3.95
105 108 4.814771 CGTGAAAAAGACAGTACTCCCTTT 59.185 41.667 11.33 11.33 0.00 3.11
106 109 5.277345 CGTGAAAAAGACAGTACTCCCTTTG 60.277 44.000 15.74 0.00 0.00 2.77
107 110 5.589050 GTGAAAAAGACAGTACTCCCTTTGT 59.411 40.000 15.74 12.11 0.00 2.83
108 111 6.095021 GTGAAAAAGACAGTACTCCCTTTGTT 59.905 38.462 15.74 12.65 0.00 2.83
109 112 6.317893 TGAAAAAGACAGTACTCCCTTTGTTC 59.682 38.462 15.74 17.69 0.00 3.18
110 113 4.353383 AAGACAGTACTCCCTTTGTTCC 57.647 45.455 0.00 0.00 0.00 3.62
111 114 3.588569 AGACAGTACTCCCTTTGTTCCT 58.411 45.455 0.00 0.00 0.00 3.36
112 115 4.748701 AGACAGTACTCCCTTTGTTCCTA 58.251 43.478 0.00 0.00 0.00 2.94
113 116 5.152934 AGACAGTACTCCCTTTGTTCCTAA 58.847 41.667 0.00 0.00 0.00 2.69
114 117 5.605488 AGACAGTACTCCCTTTGTTCCTAAA 59.395 40.000 0.00 0.00 0.00 1.85
115 118 6.272558 AGACAGTACTCCCTTTGTTCCTAAAT 59.727 38.462 0.00 0.00 0.00 1.40
116 119 7.456902 AGACAGTACTCCCTTTGTTCCTAAATA 59.543 37.037 0.00 0.00 0.00 1.40
117 120 8.159229 ACAGTACTCCCTTTGTTCCTAAATAT 57.841 34.615 0.00 0.00 0.00 1.28
118 121 9.275572 ACAGTACTCCCTTTGTTCCTAAATATA 57.724 33.333 0.00 0.00 0.00 0.86
125 128 9.816787 TCCCTTTGTTCCTAAATATAACTTTGT 57.183 29.630 0.00 0.00 0.00 2.83
143 146 7.907214 ACTTTGTAGACATTTCACTATGGAC 57.093 36.000 0.00 0.00 0.00 4.02
144 147 7.450074 ACTTTGTAGACATTTCACTATGGACA 58.550 34.615 0.00 0.00 0.00 4.02
145 148 7.936847 ACTTTGTAGACATTTCACTATGGACAA 59.063 33.333 0.00 0.00 31.10 3.18
146 149 7.667043 TTGTAGACATTTCACTATGGACAAC 57.333 36.000 0.00 0.00 29.52 3.32
147 150 6.764379 TGTAGACATTTCACTATGGACAACA 58.236 36.000 0.00 0.00 0.00 3.33
148 151 7.394016 TGTAGACATTTCACTATGGACAACAT 58.606 34.615 0.00 0.00 43.68 2.71
149 152 8.536175 TGTAGACATTTCACTATGGACAACATA 58.464 33.333 0.00 0.00 41.03 2.29
150 153 9.547753 GTAGACATTTCACTATGGACAACATAT 57.452 33.333 0.00 0.00 41.07 1.78
152 155 9.770097 AGACATTTCACTATGGACAACATATAG 57.230 33.333 0.00 0.00 41.07 1.31
153 156 9.764363 GACATTTCACTATGGACAACATATAGA 57.236 33.333 0.00 0.00 41.07 1.98
194 197 9.569122 TTTTAGAGTGTAGATTTTACAAAGGCT 57.431 29.630 0.00 0.00 0.00 4.58
195 198 9.569122 TTTAGAGTGTAGATTTTACAAAGGCTT 57.431 29.630 0.00 0.00 0.00 4.35
211 214 8.697507 ACAAAGGCTTATATTTAGGAATGGAG 57.302 34.615 0.00 0.00 0.00 3.86
212 215 7.725844 ACAAAGGCTTATATTTAGGAATGGAGG 59.274 37.037 0.00 0.00 0.00 4.30
213 216 7.648177 AAGGCTTATATTTAGGAATGGAGGA 57.352 36.000 0.00 0.00 0.00 3.71
214 217 7.648177 AGGCTTATATTTAGGAATGGAGGAA 57.352 36.000 0.00 0.00 0.00 3.36
215 218 7.694093 AGGCTTATATTTAGGAATGGAGGAAG 58.306 38.462 0.00 0.00 0.00 3.46
216 219 7.295911 AGGCTTATATTTAGGAATGGAGGAAGT 59.704 37.037 0.00 0.00 0.00 3.01
217 220 8.603304 GGCTTATATTTAGGAATGGAGGAAGTA 58.397 37.037 0.00 0.00 0.00 2.24
227 230 8.950007 AGGAATGGAGGAAGTATTAAAAACAA 57.050 30.769 0.00 0.00 0.00 2.83
228 231 9.025041 AGGAATGGAGGAAGTATTAAAAACAAG 57.975 33.333 0.00 0.00 0.00 3.16
229 232 9.020731 GGAATGGAGGAAGTATTAAAAACAAGA 57.979 33.333 0.00 0.00 0.00 3.02
293 297 7.872483 ACCAAGAATAAAACAATCCACATGAAC 59.128 33.333 0.00 0.00 0.00 3.18
335 339 1.208293 AGGGAGGTTGAGCGAGATTTC 59.792 52.381 0.00 0.00 0.00 2.17
356 360 3.376234 TCGTTAGGTCATACGAGAACCAG 59.624 47.826 0.00 0.00 41.38 4.00
368 372 2.668457 CGAGAACCAGAGAAAATCCGTG 59.332 50.000 0.00 0.00 0.00 4.94
380 384 6.015350 AGAGAAAATCCGTGTATCATATCCGT 60.015 38.462 0.00 0.00 0.00 4.69
405 409 1.523758 ATCCTGCGAGTGGTGAAAAC 58.476 50.000 0.00 0.00 0.00 2.43
510 514 2.731587 CTTTCCAAGGTGCGGCGTTG 62.732 60.000 9.37 4.75 41.24 4.10
526 530 1.464608 CGTTGGTTGCATGTAGGACAG 59.535 52.381 0.00 0.00 0.00 3.51
529 533 0.394352 GGTTGCATGTAGGACAGGGG 60.394 60.000 0.00 0.00 29.37 4.79
538 542 0.858369 TAGGACAGGGGGTAGCTAGG 59.142 60.000 0.00 0.00 0.00 3.02
550 554 4.200092 GGGTAGCTAGGAAACCATTCTTG 58.800 47.826 5.02 0.00 35.79 3.02
626 630 2.341257 CTGACCAACCGAATCACTCAG 58.659 52.381 0.00 0.00 0.00 3.35
651 655 1.069022 CACCAAGTGAAAGCGACCATG 60.069 52.381 0.00 0.00 35.23 3.66
652 656 0.523072 CCAAGTGAAAGCGACCATGG 59.477 55.000 11.19 11.19 0.00 3.66
653 657 0.109597 CAAGTGAAAGCGACCATGGC 60.110 55.000 13.04 3.65 0.00 4.40
654 658 1.244019 AAGTGAAAGCGACCATGGCC 61.244 55.000 13.04 0.00 0.00 5.36
712 716 2.591715 AGCCGACACCAGCAACAC 60.592 61.111 0.00 0.00 0.00 3.32
774 778 6.209788 TCCTCACTTCTTCTTACTCTTCTTCC 59.790 42.308 0.00 0.00 0.00 3.46
801 805 1.699730 GCTTCTCCCTCTACCTCCTC 58.300 60.000 0.00 0.00 0.00 3.71
899 921 4.388499 TCGGCGTCTCCCTTTGGC 62.388 66.667 6.85 0.00 0.00 4.52
954 976 0.463833 CCGGCCAGGTGTTCTATTCC 60.464 60.000 2.24 0.00 34.51 3.01
961 983 3.384789 CCAGGTGTTCTATTCCATCTCGA 59.615 47.826 0.00 0.00 0.00 4.04
993 1019 3.927163 GACGTCGGTGCGGGTTGAT 62.927 63.158 0.00 0.00 35.98 2.57
995 1021 3.186047 GTCGGTGCGGGTTGATCG 61.186 66.667 0.00 0.00 0.00 3.69
996 1022 3.375239 TCGGTGCGGGTTGATCGA 61.375 61.111 0.00 0.00 0.00 3.59
997 1023 2.202878 CGGTGCGGGTTGATCGAT 60.203 61.111 0.00 0.00 0.00 3.59
1135 1211 4.272018 CAGTACTGCTAGAATCAATGCACC 59.728 45.833 10.54 0.00 0.00 5.01
1138 1214 0.947244 GCTAGAATCAATGCACCCCG 59.053 55.000 0.00 0.00 0.00 5.73
1139 1215 1.747206 GCTAGAATCAATGCACCCCGT 60.747 52.381 0.00 0.00 0.00 5.28
1169 1252 1.202770 AGTCAGGTGGTTTCCTTTCCG 60.203 52.381 0.00 0.00 35.37 4.30
1174 1257 2.691526 AGGTGGTTTCCTTTCCGTTTTC 59.308 45.455 0.00 0.00 33.52 2.29
1292 1426 0.753111 GGGCCAGCCTGACTTATTGG 60.753 60.000 4.39 0.00 36.10 3.16
1336 1470 2.159071 ACTTGCTGATGCTTTTGTTGCA 60.159 40.909 0.00 0.00 44.95 4.08
1373 1564 2.884571 TTGCAGACGACGACGACGA 61.885 57.895 25.15 0.25 42.66 4.20
1374 1565 2.864248 GCAGACGACGACGACGAC 60.864 66.667 25.15 18.88 42.66 4.34
1469 2074 2.751259 AGAATCGTCTTGTGCAATGCAT 59.249 40.909 12.38 0.00 41.91 3.96
1508 2113 3.642705 GGTTTGGAGACTGAAAATGTGC 58.357 45.455 0.00 0.00 0.00 4.57
1603 2220 4.885270 TGCACCCAACCACCACCG 62.885 66.667 0.00 0.00 0.00 4.94
1748 2365 1.561769 ATCCACACCATGAAGGGCGA 61.562 55.000 0.00 0.00 43.89 5.54
1827 2444 2.952978 CTCCTACTCGCCAAGTGTCTAT 59.047 50.000 0.00 0.00 39.11 1.98
1839 2477 4.384098 CCAAGTGTCTATACCAGCAATGGA 60.384 45.833 0.31 0.00 30.05 3.41
2030 2842 2.506061 CCAGAGGATCAGGAGCCGG 61.506 68.421 0.00 0.00 46.05 6.13
2060 2872 2.350772 GCCCAAAGTTCAACGATGACAG 60.351 50.000 0.00 0.00 34.61 3.51
2118 2934 7.907214 GGTAACCACCAATCTGACATATATC 57.093 40.000 0.00 0.00 45.04 1.63
2130 2946 8.999220 ATCTGACATATATCTATGCAACACTG 57.001 34.615 0.00 0.00 38.67 3.66
2192 3015 3.273434 TCCTTCCAGAAGCAATCGAATG 58.727 45.455 1.68 0.00 37.11 2.67
2213 3036 1.285950 GCAGACCAAAAACCTCCGC 59.714 57.895 0.00 0.00 0.00 5.54
2214 3037 1.452145 GCAGACCAAAAACCTCCGCA 61.452 55.000 0.00 0.00 0.00 5.69
2233 3056 1.052124 AGGTCACCCAAGAACCGTCA 61.052 55.000 0.00 0.00 0.00 4.35
2277 3103 4.093291 CGAGCAGAGCAAGGCCCT 62.093 66.667 0.00 0.00 0.00 5.19
2582 3414 2.362632 ACCTCCGAGGGTTCTCCG 60.363 66.667 18.99 0.00 40.58 4.63
2675 3538 8.774586 TCATCTCTTGCTTTTTGTTAGAAGTAC 58.225 33.333 0.00 0.00 0.00 2.73
2676 3539 8.778358 CATCTCTTGCTTTTTGTTAGAAGTACT 58.222 33.333 0.00 0.00 0.00 2.73
2703 3566 1.092921 TTGGTCGTGTTGTCTGGTGC 61.093 55.000 0.00 0.00 0.00 5.01
2740 3603 3.368571 GCCTTGCAGCAGGTGGAC 61.369 66.667 13.39 3.69 36.15 4.02
2825 3695 6.105657 TCATGCACGTATGTACATTTTGAG 57.894 37.500 14.77 4.45 29.38 3.02
2826 3696 5.872070 TCATGCACGTATGTACATTTTGAGA 59.128 36.000 14.77 5.68 29.38 3.27
2827 3697 5.778161 TGCACGTATGTACATTTTGAGAG 57.222 39.130 14.77 1.96 0.00 3.20
2828 3698 5.474825 TGCACGTATGTACATTTTGAGAGA 58.525 37.500 14.77 0.00 0.00 3.10
2836 3706 6.280855 TGTACATTTTGAGAGATCTTCGGA 57.719 37.500 0.00 0.00 0.00 4.55
2954 3848 1.174783 CTCTGAAAAGCTGCTGGCAT 58.825 50.000 1.35 0.00 44.79 4.40
2979 3875 3.910648 AGAACAAGGTACAGTAGTTCGC 58.089 45.455 11.48 0.00 42.39 4.70
2991 3887 9.143631 GGTACAGTAGTTCGCTTAAAGAATTTA 57.856 33.333 0.00 0.00 40.09 1.40
3019 4042 8.918961 TTGGTGTAAAGAAAGTTTAACATGTG 57.081 30.769 0.00 0.00 0.00 3.21
3033 4056 2.306847 ACATGTGTGGGTTGTTTCCTC 58.693 47.619 0.00 0.00 0.00 3.71
3054 4079 2.098117 CCCTTTCAGGCAACGATCAATC 59.902 50.000 0.00 0.00 46.39 2.67
3059 4084 3.942829 TCAGGCAACGATCAATCTTTCT 58.057 40.909 0.00 0.00 46.39 2.52
3075 4100 5.200368 TCTTTCTGGGCAAAAGTTCAATC 57.800 39.130 6.27 0.00 35.64 2.67
3144 4169 6.715347 AAGAAGTGAGCATTTTGGTAGTTT 57.285 33.333 0.00 0.00 0.00 2.66
3145 4170 6.715347 AGAAGTGAGCATTTTGGTAGTTTT 57.285 33.333 0.00 0.00 0.00 2.43
3148 4173 6.076981 AGTGAGCATTTTGGTAGTTTTCTG 57.923 37.500 0.00 0.00 0.00 3.02
3304 4360 0.804989 GAGCCCAACATTCTGTTCGG 59.195 55.000 0.00 0.00 40.86 4.30
3332 4388 1.137675 TGTGGCATCAGATCTTCTCCG 59.862 52.381 0.00 0.00 0.00 4.63
3429 4504 9.799106 TGAAGGAAAGAGAAATACTTGAAATCT 57.201 29.630 0.00 0.00 0.00 2.40
3431 4506 8.800370 AGGAAAGAGAAATACTTGAAATCTCC 57.200 34.615 0.00 0.00 37.77 3.71
3432 4507 8.386264 AGGAAAGAGAAATACTTGAAATCTCCA 58.614 33.333 0.00 0.00 37.77 3.86
3433 4508 9.183368 GGAAAGAGAAATACTTGAAATCTCCAT 57.817 33.333 0.00 0.00 37.77 3.41
3436 4511 9.745018 AAGAGAAATACTTGAAATCTCCATTGA 57.255 29.630 0.00 0.00 37.77 2.57
3437 4512 9.745018 AGAGAAATACTTGAAATCTCCATTGAA 57.255 29.630 0.00 0.00 37.77 2.69
3491 4566 4.212847 CCATTGAATCTAACATGAGCGGAG 59.787 45.833 0.00 0.00 0.00 4.63
3497 4574 4.046938 TCTAACATGAGCGGAGTGAATC 57.953 45.455 0.00 0.00 0.00 2.52
3531 4760 7.492020 GCACATGCATATTAATTTTGAGTTCCA 59.508 33.333 0.00 0.00 41.59 3.53
3668 4897 3.548770 CCTGATACACTCCAACATGCAT 58.451 45.455 0.00 0.00 0.00 3.96
3713 4942 0.900421 TGCTCAGGTGGATCTGTGAG 59.100 55.000 8.77 8.77 39.60 3.51
3843 5090 1.521450 CCTGCTGCCCAAGTGAACAG 61.521 60.000 0.00 0.00 0.00 3.16
3844 5091 0.820891 CTGCTGCCCAAGTGAACAGT 60.821 55.000 0.00 0.00 32.65 3.55
3929 5336 9.477484 CCATGTATATTGTTGTCTTAGAGGTAC 57.523 37.037 0.00 0.00 0.00 3.34
3953 5362 7.665690 ACAAATAGTGGTTTGATATGTGCAAA 58.334 30.769 6.39 0.00 40.64 3.68
4069 5486 1.167851 AACATGATGAGCAACACCCG 58.832 50.000 0.00 0.00 0.00 5.28
4070 5487 0.677731 ACATGATGAGCAACACCCGG 60.678 55.000 0.00 0.00 0.00 5.73
4071 5488 1.077501 ATGATGAGCAACACCCGGG 60.078 57.895 22.25 22.25 0.00 5.73
4073 5490 1.745489 GATGAGCAACACCCGGGTC 60.745 63.158 27.51 13.40 0.00 4.46
4076 5493 2.203877 AGCAACACCCGGGTCCTA 60.204 61.111 27.51 0.00 0.00 2.94
4081 5498 1.555992 CAACACCCGGGTCCTACATAA 59.444 52.381 27.51 0.00 0.00 1.90
4082 5499 2.171870 CAACACCCGGGTCCTACATAAT 59.828 50.000 27.51 0.00 0.00 1.28
4112 5529 4.499019 GGACACAACCAAATACCAACTGTG 60.499 45.833 0.00 0.00 38.85 3.66
4125 5542 5.059404 ACCAACTGTGTGACAAAAGAAAG 57.941 39.130 3.80 0.00 0.00 2.62
4147 5564 6.241207 AGGATAAAAATTGACATATCGGCG 57.759 37.500 0.00 0.00 0.00 6.46
4167 5584 4.495844 GGCGGCAATAAAGTCATACAAGAC 60.496 45.833 3.07 0.00 38.81 3.01
4194 5611 0.608640 GAGAACTTCCCCTTCGCTCA 59.391 55.000 0.00 0.00 0.00 4.26
4204 5621 3.639541 CTTCGCTCACGCTGCCTCT 62.640 63.158 0.00 0.00 39.84 3.69
4255 5672 2.034048 GCCCTCGACCCATCTTCCTC 62.034 65.000 0.00 0.00 0.00 3.71
4266 5683 0.105246 ATCTTCCTCGCCCATCTCCT 60.105 55.000 0.00 0.00 0.00 3.69
4306 5723 2.048127 GAGCAAAGCTCGTCCGGT 60.048 61.111 0.00 0.00 45.85 5.28
4310 5727 1.079127 CAAAGCTCGTCCGGTGGAT 60.079 57.895 0.00 0.00 32.73 3.41
4338 5755 4.459089 GGCTCGCCTCGCCTCTTT 62.459 66.667 0.00 0.00 44.17 2.52
4340 5757 2.035442 GCTCGCCTCGCCTCTTTTT 61.035 57.895 0.00 0.00 0.00 1.94
4363 5780 0.606604 GGAAACCTCCGACTAGTGCA 59.393 55.000 0.00 0.00 30.03 4.57
4380 5797 2.039831 ACACTGGTGACCCTGGGT 60.040 61.111 20.72 20.72 41.15 4.51
4388 5805 4.365111 GACCCTGGGTGCCATGCA 62.365 66.667 26.16 0.00 35.25 3.96
4448 5865 3.943479 TATCGGCGGTTGTTGCGCT 62.943 57.895 9.73 0.00 0.00 5.92
4525 5942 2.506472 GCGTCCCCTTCCCAGATC 59.494 66.667 0.00 0.00 0.00 2.75
4530 5947 1.143889 GTCCCCTTCCCAGATCCATTC 59.856 57.143 0.00 0.00 0.00 2.67
4531 5948 0.480252 CCCCTTCCCAGATCCATTCC 59.520 60.000 0.00 0.00 0.00 3.01
4535 5952 1.694150 CTTCCCAGATCCATTCCGCTA 59.306 52.381 0.00 0.00 0.00 4.26
4537 5954 0.322975 CCCAGATCCATTCCGCTAGG 59.677 60.000 0.00 0.00 39.46 3.02
4584 6001 4.702274 GCCCTGTGCATGGGGGTT 62.702 66.667 23.62 0.00 44.71 4.11
4585 6002 2.681064 CCCTGTGCATGGGGGTTG 60.681 66.667 17.21 0.00 40.97 3.77
4586 6003 3.384532 CCTGTGCATGGGGGTTGC 61.385 66.667 0.00 0.00 40.55 4.17
4587 6004 3.751246 CTGTGCATGGGGGTTGCG 61.751 66.667 0.00 0.00 43.10 4.85
4597 6014 4.699522 GGGTTGCGCTCCGGAGTT 62.700 66.667 31.43 0.00 0.00 3.01
4598 6015 3.423154 GGTTGCGCTCCGGAGTTG 61.423 66.667 31.43 24.26 0.00 3.16
4599 6016 4.090057 GTTGCGCTCCGGAGTTGC 62.090 66.667 31.62 31.62 34.20 4.17
4600 6017 4.314440 TTGCGCTCCGGAGTTGCT 62.314 61.111 34.91 0.00 34.53 3.91
4601 6018 4.742201 TGCGCTCCGGAGTTGCTC 62.742 66.667 34.91 20.32 34.53 4.26
4602 6019 4.443266 GCGCTCCGGAGTTGCTCT 62.443 66.667 31.25 0.00 0.00 4.09
4603 6020 2.202676 CGCTCCGGAGTTGCTCTC 60.203 66.667 31.43 12.73 42.07 3.20
4612 6029 1.567357 GAGTTGCTCTCCCTTCCTCT 58.433 55.000 0.00 0.00 37.22 3.69
4613 6030 1.480545 GAGTTGCTCTCCCTTCCTCTC 59.519 57.143 0.00 0.00 37.22 3.20
4614 6031 0.539518 GTTGCTCTCCCTTCCTCTCC 59.460 60.000 0.00 0.00 0.00 3.71
4615 6032 0.972983 TTGCTCTCCCTTCCTCTCCG 60.973 60.000 0.00 0.00 0.00 4.63
4616 6033 1.380650 GCTCTCCCTTCCTCTCCGT 60.381 63.158 0.00 0.00 0.00 4.69
4617 6034 1.388837 GCTCTCCCTTCCTCTCCGTC 61.389 65.000 0.00 0.00 0.00 4.79
4618 6035 1.077644 TCTCCCTTCCTCTCCGTCG 60.078 63.158 0.00 0.00 0.00 5.12
4619 6036 1.378778 CTCCCTTCCTCTCCGTCGT 60.379 63.158 0.00 0.00 0.00 4.34
4620 6037 1.658686 CTCCCTTCCTCTCCGTCGTG 61.659 65.000 0.00 0.00 0.00 4.35
4621 6038 2.711922 CCCTTCCTCTCCGTCGTGG 61.712 68.421 0.00 0.00 40.09 4.94
4622 6039 1.977544 CCTTCCTCTCCGTCGTGGT 60.978 63.158 0.00 0.00 39.52 4.16
4623 6040 1.213013 CTTCCTCTCCGTCGTGGTG 59.787 63.158 0.00 0.00 39.52 4.17
4624 6041 1.228337 TTCCTCTCCGTCGTGGTGA 60.228 57.895 0.00 2.27 37.91 4.02
4631 6048 2.989824 CGTCGTGGTGAGGGAGGT 60.990 66.667 0.00 0.00 0.00 3.85
4632 6049 2.971452 GTCGTGGTGAGGGAGGTC 59.029 66.667 0.00 0.00 0.00 3.85
4633 6050 1.906824 GTCGTGGTGAGGGAGGTCA 60.907 63.158 0.00 0.00 0.00 4.02
4634 6051 1.078528 TCGTGGTGAGGGAGGTCAT 59.921 57.895 0.00 0.00 0.00 3.06
4635 6052 1.219124 CGTGGTGAGGGAGGTCATG 59.781 63.158 0.00 0.00 0.00 3.07
4636 6053 1.604378 GTGGTGAGGGAGGTCATGG 59.396 63.158 0.00 0.00 0.00 3.66
4637 6054 1.160870 TGGTGAGGGAGGTCATGGT 59.839 57.895 0.00 0.00 0.00 3.55
4638 6055 1.200760 TGGTGAGGGAGGTCATGGTG 61.201 60.000 0.00 0.00 0.00 4.17
4639 6056 1.201429 GGTGAGGGAGGTCATGGTGT 61.201 60.000 0.00 0.00 0.00 4.16
4640 6057 0.693049 GTGAGGGAGGTCATGGTGTT 59.307 55.000 0.00 0.00 0.00 3.32
4641 6058 0.692476 TGAGGGAGGTCATGGTGTTG 59.308 55.000 0.00 0.00 0.00 3.33
4642 6059 0.693049 GAGGGAGGTCATGGTGTTGT 59.307 55.000 0.00 0.00 0.00 3.32
4643 6060 1.073923 GAGGGAGGTCATGGTGTTGTT 59.926 52.381 0.00 0.00 0.00 2.83
4644 6061 2.304761 GAGGGAGGTCATGGTGTTGTTA 59.695 50.000 0.00 0.00 0.00 2.41
4645 6062 2.305927 AGGGAGGTCATGGTGTTGTTAG 59.694 50.000 0.00 0.00 0.00 2.34
4646 6063 2.084546 GGAGGTCATGGTGTTGTTAGC 58.915 52.381 0.00 0.00 0.00 3.09
4647 6064 1.732259 GAGGTCATGGTGTTGTTAGCG 59.268 52.381 0.00 0.00 0.00 4.26
4648 6065 1.071699 AGGTCATGGTGTTGTTAGCGT 59.928 47.619 0.00 0.00 0.00 5.07
4649 6066 1.196808 GGTCATGGTGTTGTTAGCGTG 59.803 52.381 0.00 0.00 36.63 5.34
4650 6067 1.196808 GTCATGGTGTTGTTAGCGTGG 59.803 52.381 0.00 0.00 36.13 4.94
4651 6068 1.202710 TCATGGTGTTGTTAGCGTGGT 60.203 47.619 0.00 0.00 36.13 4.16
4652 6069 1.069296 CATGGTGTTGTTAGCGTGGTG 60.069 52.381 0.00 0.00 32.82 4.17
4653 6070 0.816018 TGGTGTTGTTAGCGTGGTGG 60.816 55.000 0.00 0.00 0.00 4.61
4654 6071 0.816421 GGTGTTGTTAGCGTGGTGGT 60.816 55.000 0.00 0.00 0.00 4.16
4655 6072 0.584876 GTGTTGTTAGCGTGGTGGTC 59.415 55.000 0.00 0.00 0.00 4.02
4656 6073 0.466543 TGTTGTTAGCGTGGTGGTCT 59.533 50.000 0.00 0.00 0.00 3.85
4657 6074 0.865769 GTTGTTAGCGTGGTGGTCTG 59.134 55.000 0.00 0.00 0.00 3.51
4658 6075 0.882927 TTGTTAGCGTGGTGGTCTGC 60.883 55.000 0.00 0.00 0.00 4.26
4659 6076 1.301401 GTTAGCGTGGTGGTCTGCA 60.301 57.895 0.00 0.00 0.00 4.41
4660 6077 0.882927 GTTAGCGTGGTGGTCTGCAA 60.883 55.000 0.00 0.00 0.00 4.08
4661 6078 0.602638 TTAGCGTGGTGGTCTGCAAG 60.603 55.000 0.00 0.00 0.00 4.01
4662 6079 2.449031 TAGCGTGGTGGTCTGCAAGG 62.449 60.000 0.00 0.00 0.00 3.61
4663 6080 2.425592 CGTGGTGGTCTGCAAGGA 59.574 61.111 0.00 0.00 0.00 3.36
4664 6081 1.003355 CGTGGTGGTCTGCAAGGAT 60.003 57.895 0.00 0.00 0.00 3.24
4665 6082 1.021390 CGTGGTGGTCTGCAAGGATC 61.021 60.000 0.00 0.00 0.00 3.36
4666 6083 0.326264 GTGGTGGTCTGCAAGGATCT 59.674 55.000 0.00 0.00 0.00 2.75
4667 6084 0.325933 TGGTGGTCTGCAAGGATCTG 59.674 55.000 0.00 0.00 0.00 2.90
4668 6085 0.326264 GGTGGTCTGCAAGGATCTGT 59.674 55.000 0.00 0.00 0.00 3.41
4669 6086 1.446907 GTGGTCTGCAAGGATCTGTG 58.553 55.000 0.00 0.00 0.00 3.66
4670 6087 0.321919 TGGTCTGCAAGGATCTGTGC 60.322 55.000 12.51 12.51 41.29 4.57
4671 6088 0.035630 GGTCTGCAAGGATCTGTGCT 60.036 55.000 18.00 0.00 41.48 4.40
4672 6089 1.085091 GTCTGCAAGGATCTGTGCTG 58.915 55.000 18.00 17.18 41.48 4.41
4673 6090 0.689055 TCTGCAAGGATCTGTGCTGT 59.311 50.000 18.00 0.00 41.48 4.40
4674 6091 0.803117 CTGCAAGGATCTGTGCTGTG 59.197 55.000 18.00 8.11 41.48 3.66
4675 6092 0.607217 TGCAAGGATCTGTGCTGTGG 60.607 55.000 18.00 0.00 41.48 4.17
4676 6093 0.607489 GCAAGGATCTGTGCTGTGGT 60.607 55.000 12.23 0.00 37.78 4.16
4677 6094 1.901591 CAAGGATCTGTGCTGTGGTT 58.098 50.000 0.00 0.00 0.00 3.67
4678 6095 1.538512 CAAGGATCTGTGCTGTGGTTG 59.461 52.381 0.00 0.00 0.00 3.77
4679 6096 0.607489 AGGATCTGTGCTGTGGTTGC 60.607 55.000 0.00 0.00 0.00 4.17
4680 6097 1.499056 GATCTGTGCTGTGGTTGCG 59.501 57.895 0.00 0.00 0.00 4.85
4681 6098 1.227943 ATCTGTGCTGTGGTTGCGT 60.228 52.632 0.00 0.00 0.00 5.24
4682 6099 1.509644 ATCTGTGCTGTGGTTGCGTG 61.510 55.000 0.00 0.00 0.00 5.34
4683 6100 3.185082 CTGTGCTGTGGTTGCGTGG 62.185 63.158 0.00 0.00 0.00 4.94
4684 6101 3.209097 GTGCTGTGGTTGCGTGGT 61.209 61.111 0.00 0.00 0.00 4.16
4685 6102 3.208383 TGCTGTGGTTGCGTGGTG 61.208 61.111 0.00 0.00 0.00 4.17
4686 6103 3.964875 GCTGTGGTTGCGTGGTGG 61.965 66.667 0.00 0.00 0.00 4.61
4687 6104 2.515991 CTGTGGTTGCGTGGTGGT 60.516 61.111 0.00 0.00 0.00 4.16
4688 6105 2.044848 TGTGGTTGCGTGGTGGTT 60.045 55.556 0.00 0.00 0.00 3.67
4689 6106 1.662438 CTGTGGTTGCGTGGTGGTTT 61.662 55.000 0.00 0.00 0.00 3.27
4690 6107 1.226831 GTGGTTGCGTGGTGGTTTG 60.227 57.895 0.00 0.00 0.00 2.93
4691 6108 2.279186 GGTTGCGTGGTGGTTTGC 60.279 61.111 0.00 0.00 0.00 3.68
4692 6109 2.653766 GTTGCGTGGTGGTTTGCG 60.654 61.111 0.00 0.00 0.00 4.85
4693 6110 3.893763 TTGCGTGGTGGTTTGCGG 61.894 61.111 0.00 0.00 0.00 5.69
4696 6113 4.939368 CGTGGTGGTTTGCGGGGA 62.939 66.667 0.00 0.00 0.00 4.81
4697 6114 2.983592 GTGGTGGTTTGCGGGGAG 60.984 66.667 0.00 0.00 0.00 4.30
4698 6115 4.278513 TGGTGGTTTGCGGGGAGG 62.279 66.667 0.00 0.00 0.00 4.30
4699 6116 4.280019 GGTGGTTTGCGGGGAGGT 62.280 66.667 0.00 0.00 0.00 3.85
4700 6117 2.671963 GTGGTTTGCGGGGAGGTC 60.672 66.667 0.00 0.00 0.00 3.85
4701 6118 3.172106 TGGTTTGCGGGGAGGTCA 61.172 61.111 0.00 0.00 0.00 4.02
4702 6119 2.355115 GGTTTGCGGGGAGGTCAT 59.645 61.111 0.00 0.00 0.00 3.06
4703 6120 2.046285 GGTTTGCGGGGAGGTCATG 61.046 63.158 0.00 0.00 0.00 3.07
4704 6121 2.046285 GTTTGCGGGGAGGTCATGG 61.046 63.158 0.00 0.00 0.00 3.66
4705 6122 2.534396 TTTGCGGGGAGGTCATGGT 61.534 57.895 0.00 0.00 0.00 3.55
4706 6123 2.762969 TTTGCGGGGAGGTCATGGTG 62.763 60.000 0.00 0.00 0.00 4.17
4707 6124 3.717294 GCGGGGAGGTCATGGTGT 61.717 66.667 0.00 0.00 0.00 4.16
4708 6125 2.268920 CGGGGAGGTCATGGTGTG 59.731 66.667 0.00 0.00 0.00 3.82
4709 6126 2.677228 GGGGAGGTCATGGTGTGG 59.323 66.667 0.00 0.00 0.00 4.17
4710 6127 2.231380 GGGGAGGTCATGGTGTGGT 61.231 63.158 0.00 0.00 0.00 4.16
4711 6128 1.002134 GGGAGGTCATGGTGTGGTG 60.002 63.158 0.00 0.00 0.00 4.17
4712 6129 1.002134 GGAGGTCATGGTGTGGTGG 60.002 63.158 0.00 0.00 0.00 4.61
4713 6130 1.761174 GAGGTCATGGTGTGGTGGT 59.239 57.895 0.00 0.00 0.00 4.16
4714 6131 0.321653 GAGGTCATGGTGTGGTGGTC 60.322 60.000 0.00 0.00 0.00 4.02
4715 6132 0.768221 AGGTCATGGTGTGGTGGTCT 60.768 55.000 0.00 0.00 0.00 3.85
4716 6133 0.606401 GGTCATGGTGTGGTGGTCTG 60.606 60.000 0.00 0.00 0.00 3.51
4717 6134 0.606401 GTCATGGTGTGGTGGTCTGG 60.606 60.000 0.00 0.00 0.00 3.86
4718 6135 1.303561 CATGGTGTGGTGGTCTGGG 60.304 63.158 0.00 0.00 0.00 4.45
4719 6136 1.774217 ATGGTGTGGTGGTCTGGGT 60.774 57.895 0.00 0.00 0.00 4.51
4720 6137 1.360393 ATGGTGTGGTGGTCTGGGTT 61.360 55.000 0.00 0.00 0.00 4.11
4721 6138 0.694783 TGGTGTGGTGGTCTGGGTTA 60.695 55.000 0.00 0.00 0.00 2.85
4722 6139 0.036306 GGTGTGGTGGTCTGGGTTAG 59.964 60.000 0.00 0.00 0.00 2.34
4723 6140 0.036306 GTGTGGTGGTCTGGGTTAGG 59.964 60.000 0.00 0.00 0.00 2.69
4724 6141 1.002502 GTGGTGGTCTGGGTTAGGC 60.003 63.158 0.00 0.00 0.00 3.93
4734 6151 3.709567 GGTTAGGCCCAGAGTCGT 58.290 61.111 0.00 0.00 0.00 4.34
4735 6152 1.218316 GGTTAGGCCCAGAGTCGTG 59.782 63.158 0.00 0.00 0.00 4.35
4736 6153 1.218316 GTTAGGCCCAGAGTCGTGG 59.782 63.158 0.00 2.56 37.34 4.94
4737 6154 2.656069 TTAGGCCCAGAGTCGTGGC 61.656 63.158 15.35 15.35 44.59 5.01
4738 6155 3.602075 TAGGCCCAGAGTCGTGGCT 62.602 63.158 20.77 15.33 44.71 4.75
4739 6156 4.767255 GGCCCAGAGTCGTGGCTG 62.767 72.222 20.77 0.00 44.71 4.85
4742 6159 4.007644 CCAGAGTCGTGGCTGGCA 62.008 66.667 0.00 0.00 44.53 4.92
4743 6160 2.433838 CAGAGTCGTGGCTGGCAG 60.434 66.667 10.94 10.94 0.00 4.85
4744 6161 2.919856 AGAGTCGTGGCTGGCAGT 60.920 61.111 17.16 0.00 0.00 4.40
4745 6162 2.740055 GAGTCGTGGCTGGCAGTG 60.740 66.667 17.16 0.00 0.00 3.66
4746 6163 3.521529 GAGTCGTGGCTGGCAGTGT 62.522 63.158 17.16 0.00 0.00 3.55
4747 6164 3.044305 GTCGTGGCTGGCAGTGTC 61.044 66.667 17.16 7.00 0.00 3.67
4748 6165 3.545574 TCGTGGCTGGCAGTGTCA 61.546 61.111 17.16 9.58 0.00 3.58
4749 6166 2.591429 CGTGGCTGGCAGTGTCAA 60.591 61.111 17.16 0.00 0.00 3.18
4750 6167 2.610694 CGTGGCTGGCAGTGTCAAG 61.611 63.158 17.16 10.58 0.00 3.02
4751 6168 2.113774 TGGCTGGCAGTGTCAAGG 59.886 61.111 17.16 0.00 0.00 3.61
4752 6169 2.113986 GGCTGGCAGTGTCAAGGT 59.886 61.111 17.16 0.00 0.00 3.50
4753 6170 1.968540 GGCTGGCAGTGTCAAGGTC 60.969 63.158 17.16 0.00 0.00 3.85
4754 6171 2.320587 GCTGGCAGTGTCAAGGTCG 61.321 63.158 17.16 0.00 0.00 4.79
4755 6172 1.669115 CTGGCAGTGTCAAGGTCGG 60.669 63.158 6.28 0.00 0.00 4.79
4756 6173 2.358737 GGCAGTGTCAAGGTCGGG 60.359 66.667 0.00 0.00 0.00 5.14
4757 6174 2.426023 GCAGTGTCAAGGTCGGGT 59.574 61.111 0.00 0.00 0.00 5.28
4758 6175 1.668151 GCAGTGTCAAGGTCGGGTC 60.668 63.158 0.00 0.00 0.00 4.46
4759 6176 2.050269 CAGTGTCAAGGTCGGGTCT 58.950 57.895 0.00 0.00 0.00 3.85
4760 6177 0.393077 CAGTGTCAAGGTCGGGTCTT 59.607 55.000 0.00 0.00 0.00 3.01
4761 6178 0.680061 AGTGTCAAGGTCGGGTCTTC 59.320 55.000 0.00 0.00 0.00 2.87
4762 6179 0.320508 GTGTCAAGGTCGGGTCTTCC 60.321 60.000 0.00 0.00 0.00 3.46
4780 6197 3.756677 CGACTATCGGCGCATGCG 61.757 66.667 34.83 34.83 44.10 4.73
4781 6198 3.406361 GACTATCGGCGCATGCGG 61.406 66.667 38.22 24.21 44.10 5.69
4782 6199 4.221422 ACTATCGGCGCATGCGGT 62.221 61.111 38.22 24.43 44.10 5.68
4783 6200 3.705638 CTATCGGCGCATGCGGTG 61.706 66.667 38.22 14.41 44.10 4.94
4797 6214 4.351054 GGTGGTGGGAGCCTGGTG 62.351 72.222 0.00 0.00 0.00 4.17
4798 6215 4.351054 GTGGTGGGAGCCTGGTGG 62.351 72.222 0.00 0.00 0.00 4.61
4815 6232 4.729918 GGCTCTGCCCTGTGGTGG 62.730 72.222 0.00 0.00 44.06 4.61
4824 6241 3.402681 CTGTGGTGGCTCCCGGAT 61.403 66.667 0.73 0.00 34.77 4.18
4825 6242 3.391665 CTGTGGTGGCTCCCGGATC 62.392 68.421 0.73 0.00 34.77 3.36
4826 6243 4.176752 GTGGTGGCTCCCGGATCC 62.177 72.222 0.73 0.00 34.77 3.36
4829 6246 3.866582 GTGGCTCCCGGATCCCAG 61.867 72.222 0.73 0.64 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.372582 CACGCCATCAGCTTATGTGT 58.627 50.000 7.11 2.70 40.39 3.72
41 42 3.239941 CGTTCTTCGGCTTCATAACTACG 59.760 47.826 0.00 0.00 35.71 3.51
48 49 1.148310 CACACGTTCTTCGGCTTCAT 58.852 50.000 0.00 0.00 44.69 2.57
49 50 1.495584 GCACACGTTCTTCGGCTTCA 61.496 55.000 0.00 0.00 44.69 3.02
50 51 1.204312 GCACACGTTCTTCGGCTTC 59.796 57.895 0.00 0.00 44.69 3.86
52 53 1.522806 TTGCACACGTTCTTCGGCT 60.523 52.632 0.00 0.00 44.69 5.52
58 61 2.596904 ACTACAGTTGCACACGTTCT 57.403 45.000 0.00 0.00 0.00 3.01
117 120 9.431887 GTCCATAGTGAAATGTCTACAAAGTTA 57.568 33.333 0.00 0.00 0.00 2.24
118 121 7.936847 TGTCCATAGTGAAATGTCTACAAAGTT 59.063 33.333 0.00 0.00 0.00 2.66
119 122 7.450074 TGTCCATAGTGAAATGTCTACAAAGT 58.550 34.615 0.00 0.00 0.00 2.66
120 123 7.905604 TGTCCATAGTGAAATGTCTACAAAG 57.094 36.000 0.00 0.00 0.00 2.77
121 124 7.717436 TGTTGTCCATAGTGAAATGTCTACAAA 59.283 33.333 0.00 0.00 30.53 2.83
122 125 7.220740 TGTTGTCCATAGTGAAATGTCTACAA 58.779 34.615 0.00 0.00 0.00 2.41
123 126 6.764379 TGTTGTCCATAGTGAAATGTCTACA 58.236 36.000 0.00 0.00 0.00 2.74
124 127 7.849804 ATGTTGTCCATAGTGAAATGTCTAC 57.150 36.000 0.00 0.00 29.82 2.59
126 129 9.770097 CTATATGTTGTCCATAGTGAAATGTCT 57.230 33.333 0.00 0.00 39.36 3.41
127 130 9.764363 TCTATATGTTGTCCATAGTGAAATGTC 57.236 33.333 0.00 0.00 39.36 3.06
168 171 9.569122 AGCCTTTGTAAAATCTACACTCTAAAA 57.431 29.630 0.00 0.00 0.00 1.52
169 172 9.569122 AAGCCTTTGTAAAATCTACACTCTAAA 57.431 29.630 0.00 0.00 0.00 1.85
185 188 9.793259 CTCCATTCCTAAATATAAGCCTTTGTA 57.207 33.333 0.00 0.00 0.00 2.41
186 189 7.725844 CCTCCATTCCTAAATATAAGCCTTTGT 59.274 37.037 0.00 0.00 0.00 2.83
187 190 7.944554 TCCTCCATTCCTAAATATAAGCCTTTG 59.055 37.037 0.00 0.00 0.00 2.77
188 191 8.057246 TCCTCCATTCCTAAATATAAGCCTTT 57.943 34.615 0.00 0.00 0.00 3.11
189 192 7.648177 TCCTCCATTCCTAAATATAAGCCTT 57.352 36.000 0.00 0.00 0.00 4.35
190 193 7.295911 ACTTCCTCCATTCCTAAATATAAGCCT 59.704 37.037 0.00 0.00 0.00 4.58
191 194 7.462590 ACTTCCTCCATTCCTAAATATAAGCC 58.537 38.462 0.00 0.00 0.00 4.35
202 205 8.950007 TTGTTTTTAATACTTCCTCCATTCCT 57.050 30.769 0.00 0.00 0.00 3.36
203 206 9.020731 TCTTGTTTTTAATACTTCCTCCATTCC 57.979 33.333 0.00 0.00 0.00 3.01
293 297 0.939577 CGTATGATTCCACGCGGAGG 60.940 60.000 12.47 12.80 44.10 4.30
335 339 3.376234 TCTGGTTCTCGTATGACCTAACG 59.624 47.826 0.00 0.00 40.40 3.18
345 349 3.508793 ACGGATTTTCTCTGGTTCTCGTA 59.491 43.478 0.00 0.00 34.24 3.43
347 351 2.668457 CACGGATTTTCTCTGGTTCTCG 59.332 50.000 0.00 0.00 34.24 4.04
356 360 6.089551 CACGGATATGATACACGGATTTTCTC 59.910 42.308 3.31 0.00 0.00 2.87
368 372 3.055094 AGGATTGCCCACGGATATGATAC 60.055 47.826 0.00 0.00 37.41 2.24
503 507 1.134487 CTACATGCAACCAACGCCG 59.866 57.895 0.00 0.00 0.00 6.46
510 514 0.394352 CCCCTGTCCTACATGCAACC 60.394 60.000 0.00 0.00 0.00 3.77
526 530 1.519498 ATGGTTTCCTAGCTACCCCC 58.481 55.000 0.12 0.00 0.00 5.40
529 533 4.844884 ACAAGAATGGTTTCCTAGCTACC 58.155 43.478 0.00 0.00 31.84 3.18
538 542 9.750125 AATCTACTGAAAAACAAGAATGGTTTC 57.250 29.630 0.00 0.00 45.61 2.78
550 554 7.803659 GTCTTGCCTTGTAATCTACTGAAAAAC 59.196 37.037 0.00 0.00 0.00 2.43
722 726 1.596895 GGAGGGGCCTATCGATCGAC 61.597 65.000 22.06 7.48 0.00 4.20
801 805 1.449601 GTAGGGGTGCATCCGTGTG 60.450 63.158 21.45 0.00 37.00 3.82
887 909 2.434359 CGACGGCCAAAGGGAGAC 60.434 66.667 2.24 0.00 35.59 3.36
888 910 2.602267 TCGACGGCCAAAGGGAGA 60.602 61.111 2.24 0.00 35.59 3.71
993 1019 1.878088 GCCACGTACTCCATCTATCGA 59.122 52.381 0.00 0.00 0.00 3.59
995 1021 1.068472 CGGCCACGTACTCCATCTATC 60.068 57.143 2.24 0.00 34.81 2.08
996 1022 0.959553 CGGCCACGTACTCCATCTAT 59.040 55.000 2.24 0.00 34.81 1.98
997 1023 2.411535 CGGCCACGTACTCCATCTA 58.588 57.895 2.24 0.00 34.81 1.98
1074 1110 1.305381 AGGAGGAGGAACAGTCGGG 60.305 63.158 0.00 0.00 0.00 5.14
1077 1113 2.194460 CGGAGGAGGAGGAACAGTC 58.806 63.158 0.00 0.00 0.00 3.51
1135 1211 1.300971 CTGACTGACATGGCAACGGG 61.301 60.000 1.11 0.00 42.51 5.28
1138 1214 0.877071 CACCTGACTGACATGGCAAC 59.123 55.000 1.11 0.00 0.00 4.17
1139 1215 0.250858 CCACCTGACTGACATGGCAA 60.251 55.000 1.11 0.00 0.00 4.52
1169 1252 3.370978 TGCTCCAATTCTCGATCGAAAAC 59.629 43.478 19.92 0.00 0.00 2.43
1174 1257 2.544685 ACTTGCTCCAATTCTCGATCG 58.455 47.619 9.36 9.36 0.00 3.69
1251 1384 1.832411 GCTAATCTACGCCTTGCCGC 61.832 60.000 0.00 0.00 0.00 6.53
1260 1394 1.800805 CTGGCCCATGCTAATCTACG 58.199 55.000 0.00 0.00 37.74 3.51
1292 1426 4.740822 ACTGGACCGGGCCATTGC 62.741 66.667 34.38 0.00 37.30 3.56
1336 1470 3.273434 CAACTGAACCATCATCGTCCAT 58.727 45.455 0.00 0.00 34.37 3.41
1380 1571 4.980903 GTTGCACGCCGTTGCCTG 62.981 66.667 8.71 0.00 42.25 4.85
1407 1981 0.883814 CTCAAGATCCATGCGCCTCC 60.884 60.000 4.18 0.00 0.00 4.30
1469 2074 4.974368 AACCGAAAATTATTCATGCCGA 57.026 36.364 0.00 0.00 0.00 5.54
1508 2113 2.751436 CCACCTGCACCATTCCCG 60.751 66.667 0.00 0.00 0.00 5.14
1698 2315 2.354072 CGCGCGATCTCTTCCTCC 60.354 66.667 28.94 0.00 0.00 4.30
1748 2365 2.125269 GCGCGGTGGTGATTAGGT 60.125 61.111 8.83 0.00 0.00 3.08
1827 2444 2.228545 TGCCATTTCCATTGCTGGTA 57.771 45.000 0.00 0.00 43.61 3.25
1839 2477 1.000717 GTACCGTTGCTGTTGCCATTT 60.001 47.619 0.00 0.00 38.71 2.32
2130 2946 3.439476 ACAGAGCATGATTTTCACTGAGC 59.561 43.478 0.00 0.00 0.00 4.26
2192 3015 1.285950 GAGGTTTTTGGTCTGCGCC 59.714 57.895 4.18 0.00 0.00 6.53
2277 3103 2.664851 CCGACAGCTTGTTCGGCA 60.665 61.111 13.70 0.00 35.51 5.69
2449 3278 1.501654 GCCCCCTGTCCTTCTCCTTT 61.502 60.000 0.00 0.00 0.00 3.11
2582 3414 3.791586 GGTGAGCAGAGGGGAGCC 61.792 72.222 0.00 0.00 0.00 4.70
2675 3538 6.136071 CAGACAACACGACCAAAGAAATTAG 58.864 40.000 0.00 0.00 0.00 1.73
2676 3539 5.008217 CCAGACAACACGACCAAAGAAATTA 59.992 40.000 0.00 0.00 0.00 1.40
2679 3542 2.680841 CCAGACAACACGACCAAAGAAA 59.319 45.455 0.00 0.00 0.00 2.52
2682 3545 1.330521 CACCAGACAACACGACCAAAG 59.669 52.381 0.00 0.00 0.00 2.77
2684 3547 1.092921 GCACCAGACAACACGACCAA 61.093 55.000 0.00 0.00 0.00 3.67
2687 3550 1.934463 CAGCACCAGACAACACGAC 59.066 57.895 0.00 0.00 0.00 4.34
2703 3566 1.415659 CCTCCAACATCTCCCTAGCAG 59.584 57.143 0.00 0.00 0.00 4.24
2740 3603 2.480419 CTGGTGCGTCAGAAACCTTAAG 59.520 50.000 0.00 0.00 36.93 1.85
2825 3695 5.295292 TCAAAGAAATGCATCCGAAGATCTC 59.705 40.000 0.00 0.00 0.00 2.75
2826 3696 5.188434 TCAAAGAAATGCATCCGAAGATCT 58.812 37.500 0.00 0.00 0.00 2.75
2827 3697 5.490139 TCAAAGAAATGCATCCGAAGATC 57.510 39.130 0.00 0.00 0.00 2.75
2828 3698 4.201990 GCTCAAAGAAATGCATCCGAAGAT 60.202 41.667 0.00 0.00 0.00 2.40
2932 3826 1.068679 GCCAGCAGCTTTTCAGAGTTC 60.069 52.381 0.00 0.00 38.99 3.01
2954 3848 5.981315 CGAACTACTGTACCTTGTTCTTCAA 59.019 40.000 12.77 0.00 36.03 2.69
3017 4040 0.185175 AGGGAGGAAACAACCCACAC 59.815 55.000 0.00 0.00 46.94 3.82
3019 4042 1.961394 GAAAGGGAGGAAACAACCCAC 59.039 52.381 0.00 0.00 46.94 4.61
3054 4079 4.039609 AGGATTGAACTTTTGCCCAGAAAG 59.960 41.667 0.00 0.00 39.43 2.62
3059 4084 2.892852 CAGAGGATTGAACTTTTGCCCA 59.107 45.455 0.00 0.00 0.00 5.36
3075 4100 9.270640 CAAGATGAAATTCTCTATTACCAGAGG 57.729 37.037 0.00 0.00 42.05 3.69
3319 4375 2.437085 TACTGCCGGAGAAGATCTGA 57.563 50.000 5.05 0.00 36.25 3.27
3332 4388 2.237392 AGGAGTGGATGAACTTACTGCC 59.763 50.000 0.00 0.00 32.72 4.85
3405 4480 9.237187 GGAGATTTCAAGTATTTCTCTTTCCTT 57.763 33.333 0.00 0.00 34.58 3.36
3406 4481 8.386264 TGGAGATTTCAAGTATTTCTCTTTCCT 58.614 33.333 0.00 0.00 34.58 3.36
3407 4482 8.567285 TGGAGATTTCAAGTATTTCTCTTTCC 57.433 34.615 0.00 0.00 34.58 3.13
3410 4485 9.745018 TCAATGGAGATTTCAAGTATTTCTCTT 57.255 29.630 0.00 0.00 34.58 2.85
3411 4486 9.745018 TTCAATGGAGATTTCAAGTATTTCTCT 57.255 29.630 0.00 0.00 34.58 3.10
3449 4524 2.700897 TGGAGATTTTTCCCCGCAAAAA 59.299 40.909 0.00 0.00 39.09 1.94
3450 4525 2.320781 TGGAGATTTTTCCCCGCAAAA 58.679 42.857 0.00 0.00 36.35 2.44
3451 4526 2.002505 TGGAGATTTTTCCCCGCAAA 57.997 45.000 0.00 0.00 36.35 3.68
3452 4527 2.230130 ATGGAGATTTTTCCCCGCAA 57.770 45.000 0.00 0.00 36.35 4.85
3453 4528 1.824230 CAATGGAGATTTTTCCCCGCA 59.176 47.619 0.00 0.00 36.35 5.69
3454 4529 2.099405 TCAATGGAGATTTTTCCCCGC 58.901 47.619 0.00 0.00 36.35 6.13
3455 4530 4.646492 AGATTCAATGGAGATTTTTCCCCG 59.354 41.667 0.00 0.00 36.35 5.73
3456 4531 7.124147 TGTTAGATTCAATGGAGATTTTTCCCC 59.876 37.037 0.00 0.00 36.35 4.81
3457 4532 8.066612 TGTTAGATTCAATGGAGATTTTTCCC 57.933 34.615 0.00 0.00 36.35 3.97
3458 4533 9.525409 CATGTTAGATTCAATGGAGATTTTTCC 57.475 33.333 0.00 0.00 37.77 3.13
3491 4566 1.135489 CATGTGCAGCACCAGATTCAC 60.135 52.381 23.06 0.00 32.73 3.18
3529 4758 1.276138 TGTATATCCGGAGCTGCATGG 59.724 52.381 11.34 0.00 0.00 3.66
3531 4760 2.027745 CCTTGTATATCCGGAGCTGCAT 60.028 50.000 11.34 0.38 0.00 3.96
3572 4801 1.294780 CAGCTTCGCCTTCTCCAGT 59.705 57.895 0.00 0.00 0.00 4.00
3668 4897 1.144708 TCCATGTCCTTGGCAAAGTCA 59.855 47.619 0.00 0.00 36.66 3.41
3713 4942 1.751927 CCAAGATGTGGGGAGCTGC 60.752 63.158 0.00 0.00 44.64 5.25
3929 5336 8.706492 ATTTGCACATATCAAACCACTATTTG 57.294 30.769 0.00 0.00 40.32 2.32
4069 5486 6.935208 GTGTCCATCTTAATTATGTAGGACCC 59.065 42.308 24.61 17.57 42.68 4.46
4070 5487 7.506114 TGTGTCCATCTTAATTATGTAGGACC 58.494 38.462 24.61 19.87 42.68 4.46
4071 5488 8.827677 GTTGTGTCCATCTTAATTATGTAGGAC 58.172 37.037 22.87 22.87 43.41 3.85
4073 5490 7.773224 TGGTTGTGTCCATCTTAATTATGTAGG 59.227 37.037 0.00 2.97 31.96 3.18
4076 5493 8.415950 TTTGGTTGTGTCCATCTTAATTATGT 57.584 30.769 0.00 0.00 37.33 2.29
4081 5498 6.951198 TGGTATTTGGTTGTGTCCATCTTAAT 59.049 34.615 0.00 0.00 37.33 1.40
4082 5499 6.307776 TGGTATTTGGTTGTGTCCATCTTAA 58.692 36.000 0.00 0.00 37.33 1.85
4125 5542 5.390613 CCGCCGATATGTCAATTTTTATCC 58.609 41.667 0.00 0.00 0.00 2.59
4147 5564 4.873827 TCGGTCTTGTATGACTTTATTGCC 59.126 41.667 0.00 0.00 37.16 4.52
4240 5657 2.423898 GGCGAGGAAGATGGGTCGA 61.424 63.158 0.00 0.00 34.28 4.20
4355 5772 0.393077 GGTCACCAGTGTGCACTAGT 59.607 55.000 19.41 7.09 42.46 2.57
4363 5780 2.039831 ACCCAGGGTCACCAGTGT 60.040 61.111 4.76 0.00 40.13 3.55
4380 5797 3.051479 CTGCTGACGTGCATGGCA 61.051 61.111 15.20 15.20 42.48 4.92
4388 5805 2.164865 CTTCCTGGCTCTGCTGACGT 62.165 60.000 0.00 0.00 0.00 4.34
4418 5835 3.631046 CCGATAGCTCCTGGGGCC 61.631 72.222 16.60 0.00 0.00 5.80
4419 5836 4.321966 GCCGATAGCTCCTGGGGC 62.322 72.222 11.59 11.59 38.99 5.80
4421 5838 3.996124 CCGCCGATAGCTCCTGGG 61.996 72.222 0.00 0.00 40.39 4.45
4422 5839 2.797278 AACCGCCGATAGCTCCTGG 61.797 63.158 0.00 0.00 40.39 4.45
4427 5844 2.106683 GCAACAACCGCCGATAGCT 61.107 57.895 0.00 0.00 40.39 3.32
4430 5847 3.492545 GCGCAACAACCGCCGATA 61.493 61.111 0.30 0.00 45.30 2.92
4448 5865 3.908904 TACCCCTGTAGCCGTGGCA 62.909 63.158 14.29 0.00 44.88 4.92
4462 5879 4.778143 CTGCCCACCACGCTACCC 62.778 72.222 0.00 0.00 0.00 3.69
4510 5927 1.143889 GAATGGATCTGGGAAGGGGAC 59.856 57.143 0.00 0.00 0.00 4.46
4515 5932 0.471617 AGCGGAATGGATCTGGGAAG 59.528 55.000 0.00 0.00 34.76 3.46
4517 5934 1.342074 CTAGCGGAATGGATCTGGGA 58.658 55.000 0.00 0.00 34.76 4.37
4581 5998 3.423154 CAACTCCGGAGCGCAACC 61.423 66.667 31.56 12.16 0.00 3.77
4582 5999 4.090057 GCAACTCCGGAGCGCAAC 62.090 66.667 31.41 15.77 32.33 4.17
4583 6000 4.314440 AGCAACTCCGGAGCGCAA 62.314 61.111 35.12 3.75 33.90 4.85
4584 6001 4.742201 GAGCAACTCCGGAGCGCA 62.742 66.667 35.12 4.48 33.90 6.09
4585 6002 4.443266 AGAGCAACTCCGGAGCGC 62.443 66.667 31.56 30.68 0.00 5.92
4586 6003 2.202676 GAGAGCAACTCCGGAGCG 60.203 66.667 31.56 22.87 39.53 5.03
4593 6010 1.480545 GAGAGGAAGGGAGAGCAACTC 59.519 57.143 2.89 2.89 44.24 3.01
4594 6011 1.567357 GAGAGGAAGGGAGAGCAACT 58.433 55.000 0.00 0.00 0.00 3.16
4595 6012 0.539518 GGAGAGGAAGGGAGAGCAAC 59.460 60.000 0.00 0.00 0.00 4.17
4596 6013 0.972983 CGGAGAGGAAGGGAGAGCAA 60.973 60.000 0.00 0.00 0.00 3.91
4597 6014 1.380515 CGGAGAGGAAGGGAGAGCA 60.381 63.158 0.00 0.00 0.00 4.26
4598 6015 1.380650 ACGGAGAGGAAGGGAGAGC 60.381 63.158 0.00 0.00 0.00 4.09
4599 6016 1.098712 CGACGGAGAGGAAGGGAGAG 61.099 65.000 0.00 0.00 0.00 3.20
4600 6017 1.077644 CGACGGAGAGGAAGGGAGA 60.078 63.158 0.00 0.00 0.00 3.71
4601 6018 1.378778 ACGACGGAGAGGAAGGGAG 60.379 63.158 0.00 0.00 0.00 4.30
4602 6019 1.677966 CACGACGGAGAGGAAGGGA 60.678 63.158 0.00 0.00 0.00 4.20
4603 6020 2.711922 CCACGACGGAGAGGAAGGG 61.712 68.421 0.00 0.00 36.56 3.95
4604 6021 1.977544 ACCACGACGGAGAGGAAGG 60.978 63.158 0.00 0.00 38.63 3.46
4605 6022 1.213013 CACCACGACGGAGAGGAAG 59.787 63.158 0.00 0.00 38.63 3.46
4606 6023 1.228337 TCACCACGACGGAGAGGAA 60.228 57.895 0.00 0.00 38.63 3.36
4607 6024 1.674651 CTCACCACGACGGAGAGGA 60.675 63.158 12.70 0.00 45.91 3.71
4608 6025 2.878429 CTCACCACGACGGAGAGG 59.122 66.667 12.70 0.00 45.91 3.69
4610 6027 2.675423 CCCTCACCACGACGGAGA 60.675 66.667 0.00 0.00 38.63 3.71
4611 6028 2.675423 TCCCTCACCACGACGGAG 60.675 66.667 0.00 0.00 38.63 4.63
4612 6029 2.675423 CTCCCTCACCACGACGGA 60.675 66.667 0.00 0.00 38.63 4.69
4613 6030 3.760035 CCTCCCTCACCACGACGG 61.760 72.222 0.00 0.00 42.50 4.79
4614 6031 2.989824 ACCTCCCTCACCACGACG 60.990 66.667 0.00 0.00 0.00 5.12
4615 6032 1.258445 ATGACCTCCCTCACCACGAC 61.258 60.000 0.00 0.00 0.00 4.34
4616 6033 1.078528 ATGACCTCCCTCACCACGA 59.921 57.895 0.00 0.00 0.00 4.35
4617 6034 1.219124 CATGACCTCCCTCACCACG 59.781 63.158 0.00 0.00 0.00 4.94
4618 6035 1.201429 ACCATGACCTCCCTCACCAC 61.201 60.000 0.00 0.00 0.00 4.16
4619 6036 1.160870 ACCATGACCTCCCTCACCA 59.839 57.895 0.00 0.00 0.00 4.17
4620 6037 1.201429 ACACCATGACCTCCCTCACC 61.201 60.000 0.00 0.00 0.00 4.02
4621 6038 0.693049 AACACCATGACCTCCCTCAC 59.307 55.000 0.00 0.00 0.00 3.51
4622 6039 0.692476 CAACACCATGACCTCCCTCA 59.308 55.000 0.00 0.00 0.00 3.86
4623 6040 0.693049 ACAACACCATGACCTCCCTC 59.307 55.000 0.00 0.00 0.00 4.30
4624 6041 1.149101 AACAACACCATGACCTCCCT 58.851 50.000 0.00 0.00 0.00 4.20
4625 6042 2.711542 CTAACAACACCATGACCTCCC 58.288 52.381 0.00 0.00 0.00 4.30
4626 6043 2.084546 GCTAACAACACCATGACCTCC 58.915 52.381 0.00 0.00 0.00 4.30
4627 6044 1.732259 CGCTAACAACACCATGACCTC 59.268 52.381 0.00 0.00 0.00 3.85
4628 6045 1.071699 ACGCTAACAACACCATGACCT 59.928 47.619 0.00 0.00 0.00 3.85
4629 6046 1.196808 CACGCTAACAACACCATGACC 59.803 52.381 0.00 0.00 0.00 4.02
4630 6047 1.196808 CCACGCTAACAACACCATGAC 59.803 52.381 0.00 0.00 0.00 3.06
4631 6048 1.202710 ACCACGCTAACAACACCATGA 60.203 47.619 0.00 0.00 0.00 3.07
4632 6049 1.069296 CACCACGCTAACAACACCATG 60.069 52.381 0.00 0.00 0.00 3.66
4633 6050 1.234821 CACCACGCTAACAACACCAT 58.765 50.000 0.00 0.00 0.00 3.55
4634 6051 0.816018 CCACCACGCTAACAACACCA 60.816 55.000 0.00 0.00 0.00 4.17
4635 6052 0.816421 ACCACCACGCTAACAACACC 60.816 55.000 0.00 0.00 0.00 4.16
4636 6053 0.584876 GACCACCACGCTAACAACAC 59.415 55.000 0.00 0.00 0.00 3.32
4637 6054 0.466543 AGACCACCACGCTAACAACA 59.533 50.000 0.00 0.00 0.00 3.33
4638 6055 0.865769 CAGACCACCACGCTAACAAC 59.134 55.000 0.00 0.00 0.00 3.32
4639 6056 0.882927 GCAGACCACCACGCTAACAA 60.883 55.000 0.00 0.00 0.00 2.83
4640 6057 1.301401 GCAGACCACCACGCTAACA 60.301 57.895 0.00 0.00 0.00 2.41
4641 6058 0.882927 TTGCAGACCACCACGCTAAC 60.883 55.000 0.00 0.00 0.00 2.34
4642 6059 0.602638 CTTGCAGACCACCACGCTAA 60.603 55.000 0.00 0.00 0.00 3.09
4643 6060 1.005037 CTTGCAGACCACCACGCTA 60.005 57.895 0.00 0.00 0.00 4.26
4644 6061 2.281070 CTTGCAGACCACCACGCT 60.281 61.111 0.00 0.00 0.00 5.07
4645 6062 3.357079 CCTTGCAGACCACCACGC 61.357 66.667 0.00 0.00 0.00 5.34
4646 6063 1.003355 ATCCTTGCAGACCACCACG 60.003 57.895 0.00 0.00 0.00 4.94
4647 6064 0.326264 AGATCCTTGCAGACCACCAC 59.674 55.000 0.00 0.00 0.00 4.16
4648 6065 0.325933 CAGATCCTTGCAGACCACCA 59.674 55.000 0.00 0.00 0.00 4.17
4649 6066 0.326264 ACAGATCCTTGCAGACCACC 59.674 55.000 0.00 0.00 0.00 4.61
4650 6067 1.446907 CACAGATCCTTGCAGACCAC 58.553 55.000 0.00 0.00 0.00 4.16
4651 6068 0.321919 GCACAGATCCTTGCAGACCA 60.322 55.000 10.56 0.00 38.68 4.02
4652 6069 0.035630 AGCACAGATCCTTGCAGACC 60.036 55.000 16.34 0.00 41.48 3.85
4653 6070 1.085091 CAGCACAGATCCTTGCAGAC 58.915 55.000 16.34 0.00 41.48 3.51
4654 6071 0.689055 ACAGCACAGATCCTTGCAGA 59.311 50.000 16.34 0.00 41.48 4.26
4655 6072 0.803117 CACAGCACAGATCCTTGCAG 59.197 55.000 16.34 11.64 41.48 4.41
4656 6073 0.607217 CCACAGCACAGATCCTTGCA 60.607 55.000 16.34 0.00 41.48 4.08
4657 6074 0.607489 ACCACAGCACAGATCCTTGC 60.607 55.000 7.88 7.88 39.16 4.01
4658 6075 1.538512 CAACCACAGCACAGATCCTTG 59.461 52.381 0.00 0.00 0.00 3.61
4659 6076 1.901591 CAACCACAGCACAGATCCTT 58.098 50.000 0.00 0.00 0.00 3.36
4660 6077 0.607489 GCAACCACAGCACAGATCCT 60.607 55.000 0.00 0.00 0.00 3.24
4661 6078 1.878775 GCAACCACAGCACAGATCC 59.121 57.895 0.00 0.00 0.00 3.36
4662 6079 1.230635 ACGCAACCACAGCACAGATC 61.231 55.000 0.00 0.00 0.00 2.75
4663 6080 1.227943 ACGCAACCACAGCACAGAT 60.228 52.632 0.00 0.00 0.00 2.90
4664 6081 2.179547 CACGCAACCACAGCACAGA 61.180 57.895 0.00 0.00 0.00 3.41
4665 6082 2.328989 CACGCAACCACAGCACAG 59.671 61.111 0.00 0.00 0.00 3.66
4666 6083 3.208383 CCACGCAACCACAGCACA 61.208 61.111 0.00 0.00 0.00 4.57
4667 6084 3.209097 ACCACGCAACCACAGCAC 61.209 61.111 0.00 0.00 0.00 4.40
4668 6085 3.208383 CACCACGCAACCACAGCA 61.208 61.111 0.00 0.00 0.00 4.41
4669 6086 3.964875 CCACCACGCAACCACAGC 61.965 66.667 0.00 0.00 0.00 4.40
4670 6087 1.662438 AAACCACCACGCAACCACAG 61.662 55.000 0.00 0.00 0.00 3.66
4671 6088 1.679305 AAACCACCACGCAACCACA 60.679 52.632 0.00 0.00 0.00 4.17
4672 6089 1.226831 CAAACCACCACGCAACCAC 60.227 57.895 0.00 0.00 0.00 4.16
4673 6090 3.069980 GCAAACCACCACGCAACCA 62.070 57.895 0.00 0.00 0.00 3.67
4674 6091 2.279186 GCAAACCACCACGCAACC 60.279 61.111 0.00 0.00 0.00 3.77
4675 6092 2.653766 CGCAAACCACCACGCAAC 60.654 61.111 0.00 0.00 0.00 4.17
4676 6093 3.893763 CCGCAAACCACCACGCAA 61.894 61.111 0.00 0.00 0.00 4.85
4679 6096 4.939368 TCCCCGCAAACCACCACG 62.939 66.667 0.00 0.00 0.00 4.94
4680 6097 2.983592 CTCCCCGCAAACCACCAC 60.984 66.667 0.00 0.00 0.00 4.16
4681 6098 4.278513 CCTCCCCGCAAACCACCA 62.279 66.667 0.00 0.00 0.00 4.17
4682 6099 4.280019 ACCTCCCCGCAAACCACC 62.280 66.667 0.00 0.00 0.00 4.61
4683 6100 2.671963 GACCTCCCCGCAAACCAC 60.672 66.667 0.00 0.00 0.00 4.16
4684 6101 2.534396 ATGACCTCCCCGCAAACCA 61.534 57.895 0.00 0.00 0.00 3.67
4685 6102 2.046285 CATGACCTCCCCGCAAACC 61.046 63.158 0.00 0.00 0.00 3.27
4686 6103 2.046285 CCATGACCTCCCCGCAAAC 61.046 63.158 0.00 0.00 0.00 2.93
4687 6104 2.354729 CCATGACCTCCCCGCAAA 59.645 61.111 0.00 0.00 0.00 3.68
4688 6105 2.933287 ACCATGACCTCCCCGCAA 60.933 61.111 0.00 0.00 0.00 4.85
4689 6106 3.716195 CACCATGACCTCCCCGCA 61.716 66.667 0.00 0.00 0.00 5.69
4690 6107 3.717294 ACACCATGACCTCCCCGC 61.717 66.667 0.00 0.00 0.00 6.13
4691 6108 2.268920 CACACCATGACCTCCCCG 59.731 66.667 0.00 0.00 0.00 5.73
4692 6109 2.231380 ACCACACCATGACCTCCCC 61.231 63.158 0.00 0.00 0.00 4.81
4693 6110 1.002134 CACCACACCATGACCTCCC 60.002 63.158 0.00 0.00 0.00 4.30
4694 6111 1.002134 CCACCACACCATGACCTCC 60.002 63.158 0.00 0.00 0.00 4.30
4695 6112 0.321653 GACCACCACACCATGACCTC 60.322 60.000 0.00 0.00 0.00 3.85
4696 6113 0.768221 AGACCACCACACCATGACCT 60.768 55.000 0.00 0.00 0.00 3.85
4697 6114 0.606401 CAGACCACCACACCATGACC 60.606 60.000 0.00 0.00 0.00 4.02
4698 6115 0.606401 CCAGACCACCACACCATGAC 60.606 60.000 0.00 0.00 0.00 3.06
4699 6116 1.760527 CCAGACCACCACACCATGA 59.239 57.895 0.00 0.00 0.00 3.07
4700 6117 1.303561 CCCAGACCACCACACCATG 60.304 63.158 0.00 0.00 0.00 3.66
4701 6118 1.360393 AACCCAGACCACCACACCAT 61.360 55.000 0.00 0.00 0.00 3.55
4702 6119 0.694783 TAACCCAGACCACCACACCA 60.695 55.000 0.00 0.00 0.00 4.17
4703 6120 0.036306 CTAACCCAGACCACCACACC 59.964 60.000 0.00 0.00 0.00 4.16
4704 6121 0.036306 CCTAACCCAGACCACCACAC 59.964 60.000 0.00 0.00 0.00 3.82
4705 6122 1.774894 GCCTAACCCAGACCACCACA 61.775 60.000 0.00 0.00 0.00 4.17
4706 6123 1.002502 GCCTAACCCAGACCACCAC 60.003 63.158 0.00 0.00 0.00 4.16
4707 6124 2.228480 GGCCTAACCCAGACCACCA 61.228 63.158 0.00 0.00 0.00 4.17
4708 6125 2.675371 GGCCTAACCCAGACCACC 59.325 66.667 0.00 0.00 0.00 4.61
4717 6134 1.218316 CACGACTCTGGGCCTAACC 59.782 63.158 4.53 0.00 37.93 2.85
4718 6135 1.218316 CCACGACTCTGGGCCTAAC 59.782 63.158 4.53 0.00 0.00 2.34
4719 6136 2.656069 GCCACGACTCTGGGCCTAA 61.656 63.158 4.53 0.00 41.90 2.69
4720 6137 3.075005 GCCACGACTCTGGGCCTA 61.075 66.667 4.53 0.00 41.90 3.93
4723 6140 4.767255 CCAGCCACGACTCTGGGC 62.767 72.222 11.76 0.00 44.64 5.36
4726 6143 2.433838 CTGCCAGCCACGACTCTG 60.434 66.667 0.00 0.00 0.00 3.35
4727 6144 2.919856 ACTGCCAGCCACGACTCT 60.920 61.111 0.00 0.00 0.00 3.24
4728 6145 2.740055 CACTGCCAGCCACGACTC 60.740 66.667 0.00 0.00 0.00 3.36
4729 6146 3.521529 GACACTGCCAGCCACGACT 62.522 63.158 0.00 0.00 0.00 4.18
4730 6147 3.044305 GACACTGCCAGCCACGAC 61.044 66.667 0.00 0.00 0.00 4.34
4731 6148 2.994387 CTTGACACTGCCAGCCACGA 62.994 60.000 0.00 0.00 0.00 4.35
4732 6149 2.591429 TTGACACTGCCAGCCACG 60.591 61.111 0.00 0.00 0.00 4.94
4733 6150 2.263741 CCTTGACACTGCCAGCCAC 61.264 63.158 0.00 0.00 0.00 5.01
4734 6151 2.113774 CCTTGACACTGCCAGCCA 59.886 61.111 0.00 0.00 0.00 4.75
4735 6152 1.968540 GACCTTGACACTGCCAGCC 60.969 63.158 0.00 0.00 0.00 4.85
4736 6153 2.320587 CGACCTTGACACTGCCAGC 61.321 63.158 0.00 0.00 0.00 4.85
4737 6154 1.669115 CCGACCTTGACACTGCCAG 60.669 63.158 0.00 0.00 0.00 4.85
4738 6155 2.425592 CCGACCTTGACACTGCCA 59.574 61.111 0.00 0.00 0.00 4.92
4739 6156 2.358737 CCCGACCTTGACACTGCC 60.359 66.667 0.00 0.00 0.00 4.85
4740 6157 1.668151 GACCCGACCTTGACACTGC 60.668 63.158 0.00 0.00 0.00 4.40
4741 6158 0.393077 AAGACCCGACCTTGACACTG 59.607 55.000 0.00 0.00 0.00 3.66
4742 6159 0.680061 GAAGACCCGACCTTGACACT 59.320 55.000 0.00 0.00 0.00 3.55
4743 6160 0.320508 GGAAGACCCGACCTTGACAC 60.321 60.000 0.00 0.00 0.00 3.67
4744 6161 2.055299 GGAAGACCCGACCTTGACA 58.945 57.895 0.00 0.00 0.00 3.58
4763 6180 3.756677 CGCATGCGCCGATAGTCG 61.757 66.667 29.09 0.00 40.07 4.18
4764 6181 3.406361 CCGCATGCGCCGATAGTC 61.406 66.667 34.00 0.00 38.24 2.59
4765 6182 4.221422 ACCGCATGCGCCGATAGT 62.221 61.111 34.00 21.78 38.24 2.12
4766 6183 3.705638 CACCGCATGCGCCGATAG 61.706 66.667 34.00 21.10 38.24 2.08
4780 6197 4.351054 CACCAGGCTCCCACCACC 62.351 72.222 0.00 0.00 0.00 4.61
4781 6198 4.351054 CCACCAGGCTCCCACCAC 62.351 72.222 0.00 0.00 0.00 4.16
4807 6224 3.391665 GATCCGGGAGCCACCACAG 62.392 68.421 0.00 0.00 41.20 3.66
4808 6225 3.399181 GATCCGGGAGCCACCACA 61.399 66.667 0.00 0.00 41.20 4.17
4809 6226 4.176752 GGATCCGGGAGCCACCAC 62.177 72.222 25.96 0.00 38.12 4.16
4812 6229 3.866582 CTGGGATCCGGGAGCCAC 61.867 72.222 30.81 20.46 40.28 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.