AutoCloner

Multiple sequence alignment - TraesCS1A01G070700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G070700	chr1A	100.000	3092	0	0	1	3092	53470750	53473841	0.000000e+00	5710.0
1	TraesCS1A01G070700	chr1A	82.003	1328	199	31	1010	2306	53685348	53686666	0.000000e+00	1092.0
2	TraesCS1A01G070700	chr1A	80.908	1189	202	17	964	2134	53654279	53655460	0.000000e+00	915.0
3	TraesCS1A01G070700	chr1A	80.573	1117	210	4	1010	2122	53657078	53658191	0.000000e+00	854.0
4	TraesCS1A01G070700	chr1A	79.606	1118	197	16	1042	2150	53509448	53510543	0.000000e+00	773.0
5	TraesCS1A01G070700	chr1D	91.583	1390	76	15	1	1366	54016215	54017587	0.000000e+00	1881.0
6	TraesCS1A01G070700	chr1D	96.377	966	34	1	2128	3092	54019117	54020082	0.000000e+00	1589.0
7	TraesCS1A01G070700	chr1D	96.291	728	25	2	1355	2082	54018392	54019117	0.000000e+00	1194.0
8	TraesCS1A01G070700	chr1D	82.589	1321	200	25	1010	2306	54630583	54631897	0.000000e+00	1138.0
9	TraesCS1A01G070700	chr1D	79.643	1120	215	7	1042	2150	54196062	54197179	0.000000e+00	793.0
10	TraesCS1A01G070700	chrUn	82.237	1323	202	26	1010	2306	3946403	3947718	0.000000e+00	1110.0
11	TraesCS1A01G070700	chrUn	82.237	1323	202	26	1010	2306	284396436	284397751	0.000000e+00	1110.0
12	TraesCS1A01G070700	chr1B	80.574	1081	187	17	1010	2077	89960890	89961960	0.000000e+00	811.0
13	TraesCS1A01G070700	chr1B	79.785	1118	215	8	1042	2150	90205321	90206436	0.000000e+00	802.0
14	TraesCS1A01G070700	chr7D	83.673	490	70	8	2498	2982	508672291	508672775	1.310000e-123	453.0
15	TraesCS1A01G070700	chr7B	75.962	624	121	19	1468	2084	26286602	26287203	8.390000e-76	294.0
16	TraesCS1A01G070700	chr5A	86.517	89	11	1	2329	2416	5999244	5999332	2.540000e-16	97.1
17	TraesCS1A01G070700	chr7A	96.000	50	2	0	2333	2382	266154411	266154460	7.110000e-12	82.4
18	TraesCS1A01G070700	chr3B	100.000	29	0	0	267	295	691713415	691713443	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G070700	chr1A	53470750	53473841	3091	False	5710.000000	5710	100.000000	1	3092	1	chr1A.!!$F1	3091
1	TraesCS1A01G070700	chr1A	53685348	53686666	1318	False	1092.000000	1092	82.003000	1010	2306	1	chr1A.!!$F3	1296
2	TraesCS1A01G070700	chr1A	53654279	53658191	3912	False	884.500000	915	80.740500	964	2134	2	chr1A.!!$F4	1170
3	TraesCS1A01G070700	chr1A	53509448	53510543	1095	False	773.000000	773	79.606000	1042	2150	1	chr1A.!!$F2	1108
4	TraesCS1A01G070700	chr1D	54016215	54020082	3867	False	1554.666667	1881	94.750333	1	3092	3	chr1D.!!$F3	3091
5	TraesCS1A01G070700	chr1D	54630583	54631897	1314	False	1138.000000	1138	82.589000	1010	2306	1	chr1D.!!$F2	1296
6	TraesCS1A01G070700	chr1D	54196062	54197179	1117	False	793.000000	793	79.643000	1042	2150	1	chr1D.!!$F1	1108
7	TraesCS1A01G070700	chrUn	3946403	3947718	1315	False	1110.000000	1110	82.237000	1010	2306	1	chrUn.!!$F1	1296
8	TraesCS1A01G070700	chrUn	284396436	284397751	1315	False	1110.000000	1110	82.237000	1010	2306	1	chrUn.!!$F2	1296
9	TraesCS1A01G070700	chr1B	89960890	89961960	1070	False	811.000000	811	80.574000	1010	2077	1	chr1B.!!$F1	1067
10	TraesCS1A01G070700	chr1B	90205321	90206436	1115	False	802.000000	802	79.785000	1042	2150	1	chr1B.!!$F2	1108
11	TraesCS1A01G070700	chr7B	26286602	26287203	601	False	294.000000	294	75.962000	1468	2084	1	chr7B.!!$F1	616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
634	649	0.179094	TTAGGTATTCACAGCCGCCG	60.179	55.0	0.00	0.00	0.0	6.46	F
1389	2240	0.459489	AGGTTGCTGATCTCGAGAGC	59.541	55.0	23.45	23.45	0.0	4.09	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1525	2379	0.107703	GTCACATCCGCTCCATCCAA	60.108	55.0	0.0	0.0	0.0	3.53	R
2486	3381	0.107945	AGCAAGAGAATGACCCGAGC	60.108	55.0	0.0	0.0	0.0	5.03	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.257207	TCCTCCATGACGTCTTCCTTT	58.743	47.619	17.92	0.00	0.00	3.11
30	31	0.748367	GTCTTCCTTTGGCCCGATCC	60.748	60.000	0.00	0.00	0.00	3.36
31	32	1.204786	TCTTCCTTTGGCCCGATCCA	61.205	55.000	0.00	0.00	0.00	3.41
51	52	2.890311	CAATTCTACAACCCACTTGCCA	59.110	45.455	0.00	0.00	32.41	4.92
137	139	1.852067	ATGGTGTCGGCTTTGTTCGC	61.852	55.000	0.00	0.00	0.00	4.70
140	142	2.170273	GTCGGCTTTGTTCGCGAC	59.830	61.111	9.15	4.85	0.00	5.19
164	166	1.810151	GCCTAGCTACTCTGGATCTCG	59.190	57.143	1.01	0.00	0.00	4.04
184	186	1.467920	CTTCCTTGCCTTCCATGACC	58.532	55.000	0.00	0.00	0.00	4.02
229	231	5.057149	GTGTGATGTGTTGTATCCTATCCC	58.943	45.833	0.00	0.00	0.00	3.85
251	253	5.470437	CCCTCTCCTCTTTGTTACTTTGTTC	59.530	44.000	0.00	0.00	0.00	3.18
262	264	6.295719	TGTTACTTTGTTCTCTCCTATCCC	57.704	41.667	0.00	0.00	0.00	3.85
264	266	6.500751	TGTTACTTTGTTCTCTCCTATCCCTT	59.499	38.462	0.00	0.00	0.00	3.95
276	278	7.453126	TCTCTCCTATCCCTTGATGAAAGATAC	59.547	40.741	0.00	0.00	38.24	2.24
338	340	5.917462	AGGCTGTAAGATTTTTGCTTTTGT	58.083	33.333	0.00	0.00	34.07	2.83
488	497	1.880027	GTTCGAATATGGCCCATGGAC	59.120	52.381	15.22	0.00	0.00	4.02
574	588	3.173965	CTCTTCTCCCAGTTCAACCCTA	58.826	50.000	0.00	0.00	0.00	3.53
616	631	1.614241	AACCCTAGCCGCATCTCGTT	61.614	55.000	0.00	0.00	36.19	3.85
633	648	1.296727	GTTAGGTATTCACAGCCGCC	58.703	55.000	0.00	0.00	0.00	6.13
634	649	0.179094	TTAGGTATTCACAGCCGCCG	60.179	55.000	0.00	0.00	0.00	6.46
635	650	2.638330	TAGGTATTCACAGCCGCCGC	62.638	60.000	0.00	0.00	0.00	6.53
636	651	3.573491	GTATTCACAGCCGCCGCC	61.573	66.667	0.00	0.00	34.57	6.13
681	696	1.267632	CGCTCGTCTTCTTCCTAGTCG	60.268	57.143	0.00	0.00	0.00	4.18
861	876	0.984995	CGTTTTCCCCTCTTCCTCCT	59.015	55.000	0.00	0.00	0.00	3.69
883	898	4.804420	ATCTCCCTCCCAGCGCCA	62.804	66.667	2.29	0.00	0.00	5.69
887	902	4.883354	CCCTCCCAGCGCCATTCC	62.883	72.222	2.29	0.00	0.00	3.01
910	925	1.065928	CACCGTCCCAGCTATCGAC	59.934	63.158	0.00	0.00	0.00	4.20
1006	1021	4.114997	CCACCAACGGAATGGCGC	62.115	66.667	0.00	0.00	44.75	6.53
1035	1059	0.578683	CTGCCATTGTAGCGTCATCG	59.421	55.000	0.00	0.00	40.37	3.84
1078	1102	6.621316	TCAAGATAGACGGATACTCAAGAC	57.379	41.667	0.00	0.00	0.00	3.01
1148	1178	1.002624	TTGGAGGTCACGATTGGGC	60.003	57.895	0.00	0.00	0.00	5.36
1149	1179	2.124695	GGAGGTCACGATTGGGCC	60.125	66.667	0.00	0.00	0.00	5.80
1174	1204	3.340928	GAGTATTACCCAAACGGTTGCT	58.659	45.455	7.95	0.00	45.36	3.91
1177	1207	1.510776	TTACCCAAACGGTTGCTACG	58.489	50.000	7.95	0.00	45.36	3.51
1221	1251	8.394121	GGTTTCATATCTGTTTTTCTAGCTCTG	58.606	37.037	0.00	0.00	0.00	3.35
1222	1252	8.940952	GTTTCATATCTGTTTTTCTAGCTCTGT	58.059	33.333	0.00	0.00	0.00	3.41
1229	1259	7.896811	TCTGTTTTTCTAGCTCTGTATTCTGA	58.103	34.615	0.00	0.00	0.00	3.27
1236	1266	7.652524	TCTAGCTCTGTATTCTGATGTTTCT	57.347	36.000	0.00	0.00	0.00	2.52
1239	1269	9.243637	CTAGCTCTGTATTCTGATGTTTCTAAC	57.756	37.037	0.00	0.00	0.00	2.34
1248	1278	7.722795	TTCTGATGTTTCTAACGATGTGAAA	57.277	32.000	0.00	0.00	0.00	2.69
1291	1327	3.057946	GCTTGACAAAGATGGAGAACCAC	60.058	47.826	0.00	0.00	40.33	4.16
1307	1343	4.590222	AGAACCACTGGAATCAAAAAGCAT	59.410	37.500	0.71	0.00	0.00	3.79
1317	1353	5.395990	GGAATCAAAAAGCATGATCACCCAT	60.396	40.000	0.00	0.00	36.53	4.00
1320	1356	4.158949	TCAAAAAGCATGATCACCCATGAG	59.841	41.667	0.00	0.00	44.98	2.90
1330	1366	3.391506	TCACCCATGAGCATATCTTCG	57.608	47.619	0.00	0.00	0.00	3.79
1373	2224	7.475299	TGGGGTTTCTCTAATTTTATCAAGGT	58.525	34.615	0.00	0.00	0.00	3.50
1389	2240	0.459489	AGGTTGCTGATCTCGAGAGC	59.541	55.000	23.45	23.45	0.00	4.09
1525	2379	1.326213	CGGTGACCTCCTCATCAGCT	61.326	60.000	0.00	0.00	40.42	4.24
1604	2462	1.302752	TGCTTGCTGCTCGGTCATT	60.303	52.632	0.00	0.00	43.37	2.57
1654	2512	2.408565	TGAAGGAGAGTGGGAACAGTT	58.591	47.619	0.00	0.00	46.33	3.16
1748	2612	3.007290	CCTGTTCCTGAGACAACTGATGA	59.993	47.826	0.00	0.00	0.00	2.92
1767	2631	2.634940	TGAGGGTGAAACAGGAAGAGAG	59.365	50.000	0.00	0.00	39.98	3.20
1768	2632	2.900546	GAGGGTGAAACAGGAAGAGAGA	59.099	50.000	0.00	0.00	39.98	3.10
1776	2640	5.721480	TGAAACAGGAAGAGAGATGGTGATA	59.279	40.000	0.00	0.00	0.00	2.15
2110	2974	9.239002	CAACTTAGTAGTGTAGCTAATGATCAC	57.761	37.037	0.00	0.00	34.01	3.06
2122	2989	6.766429	AGCTAATGATCACTGCATCTTATCA	58.234	36.000	15.63	0.00	0.00	2.15
2123	2990	7.395617	AGCTAATGATCACTGCATCTTATCAT	58.604	34.615	15.63	7.69	38.58	2.45
2185	3065	2.260822	ACATGTAGGTCTCAGTGGCTT	58.739	47.619	0.00	0.00	0.00	4.35
2312	3207	4.825085	TGAACTGGATTTGTTGTCCTTACC	59.175	41.667	0.00	0.00	36.68	2.85
2337	3232	1.537135	GCAGCTTTTTGTTACGGGCAA	60.537	47.619	0.00	0.00	0.00	4.52
2435	3330	1.148273	GGCCCATGCGAGATTACCA	59.852	57.895	0.00	0.00	38.85	3.25
2485	3380	3.467226	CGCTACCCACGACCCCAT	61.467	66.667	0.00	0.00	0.00	4.00
2486	3381	2.189521	GCTACCCACGACCCCATG	59.810	66.667	0.00	0.00	0.00	3.66
2502	3397	1.134280	CCATGCTCGGGTCATTCTCTT	60.134	52.381	0.00	0.00	0.00	2.85
2503	3398	1.938577	CATGCTCGGGTCATTCTCTTG	59.061	52.381	0.00	0.00	0.00	3.02
2599	3494	2.679716	GCACCTGGCCCTTGAGAT	59.320	61.111	0.00	0.00	36.11	2.75
2600	3495	1.452833	GCACCTGGCCCTTGAGATC	60.453	63.158	0.00	0.00	36.11	2.75
2632	3527	6.761242	CGTGGGTTCTATAATTCAGTTCATCA	59.239	38.462	0.00	0.00	0.00	3.07
2663	3558	1.750778	ACCGATCCAAATTGTCCATGC	59.249	47.619	0.00	0.00	0.00	4.06
2696	3591	0.389025	CCAAAACAGGAGGTTGTGCC	59.611	55.000	0.00	0.00	42.41	5.01
2698	3593	1.734388	AAAACAGGAGGTTGTGCCGC	61.734	55.000	0.00	0.00	43.70	6.53
2720	3615	5.611374	GCAGATTGGTCCAATAAGTAGCTA	58.389	41.667	17.33	0.00	33.90	3.32
2818	3713	1.027357	CTGCTCATGTGTATTGGGGC	58.973	55.000	0.00	0.00	0.00	5.80
2843	3739	6.038985	CGTATGAGTTGATGTCAAGAGTGAT	58.961	40.000	0.00	0.00	36.39	3.06
2849	3745	6.236409	AGTTGATGTCAAGAGTGATTGATGT	58.764	36.000	0.00	0.00	41.05	3.06
2914	3810	3.593442	AGATCAAAATTGGGGGCGATA	57.407	42.857	0.00	0.00	0.00	2.92
2973	3869	3.508793	ACTAGCGTTTAGTTGTAGAGGCA	59.491	43.478	0.00	0.00	28.89	4.75
3069	4040	7.683437	ATGCACATAGATGAATATGGTTCAG	57.317	36.000	0.00	0.00	37.45	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	0.748367	GGATCGGGCCAAAGGAAGAC	60.748	60.000	4.39	0.00	0.00	3.01
20	21	1.208706	TGTAGAATTGGATCGGGCCA	58.791	50.000	4.39	0.00	35.78	5.36
30	31	2.890311	TGGCAAGTGGGTTGTAGAATTG	59.110	45.455	0.00	0.00	38.55	2.32
31	32	3.237268	TGGCAAGTGGGTTGTAGAATT	57.763	42.857	0.00	0.00	38.55	2.17
118	120	1.852067	GCGAACAAAGCCGACACCAT	61.852	55.000	0.00	0.00	0.00	3.55
124	126	3.399770	CGTCGCGAACAAAGCCGA	61.400	61.111	12.06	0.00	0.00	5.54
137	139	1.096386	AGAGTAGCTAGGCCACGTCG	61.096	60.000	5.01	0.00	0.00	5.12
140	142	0.752009	TCCAGAGTAGCTAGGCCACG	60.752	60.000	5.01	0.00	0.00	4.94
164	166	0.813821	GTCATGGAAGGCAAGGAAGC	59.186	55.000	0.00	0.00	0.00	3.86
184	186	0.317160	TCGCCCAAGCATATACTCCG	59.683	55.000	0.00	0.00	39.83	4.63
229	231	7.213678	AGAGAACAAAGTAACAAAGAGGAGAG	58.786	38.462	0.00	0.00	0.00	3.20
251	253	6.684897	ATCTTTCATCAAGGGATAGGAGAG	57.315	41.667	0.00	0.00	32.64	3.20
262	264	7.257006	CAAAGTTTGCGTATCTTTCATCAAG	57.743	36.000	1.96	0.00	30.41	3.02
488	497	1.591327	GCCGCAGTTGTTGGGTTTG	60.591	57.895	0.00	0.00	38.02	2.93
616	631	1.440060	CGGCGGCTGTGAATACCTA	59.560	57.895	7.61	0.00	0.00	3.08
861	876	1.694169	GCTGGGAGGGAGATGGGAA	60.694	63.158	0.00	0.00	0.00	3.97
883	898	2.124507	CTGGGACGGTGGTGTGGAAT	62.125	60.000	0.00	0.00	0.00	3.01
887	902	1.899437	ATAGCTGGGACGGTGGTGTG	61.899	60.000	0.00	0.00	36.83	3.82
910	925	4.078516	GTCGGGGTCGAGTTGGGG	62.079	72.222	0.00	0.00	46.91	4.96
970	985	1.451028	GCTAGGCAGTTGCAGGGAG	60.451	63.158	6.43	0.00	44.36	4.30
1035	1059	5.296151	TGATCACATATGAACTTCCCTCC	57.704	43.478	10.38	0.00	38.69	4.30
1078	1102	0.677731	TGCTCGATTTGCCCCTTGAG	60.678	55.000	0.00	0.00	0.00	3.02
1111	1135	3.758554	CCAACAGTGAAAGGGGTAGATTG	59.241	47.826	0.00	0.00	0.00	2.67
1148	1178	2.273557	CGTTTGGGTAATACTCCACGG	58.726	52.381	4.68	0.00	32.00	4.94
1149	1179	2.273557	CCGTTTGGGTAATACTCCACG	58.726	52.381	5.43	5.43	32.00	4.94
1174	1204	2.273557	GGCTTCATACTTTTCGGCGTA	58.726	47.619	6.85	0.00	0.00	4.42
1177	1207	0.377203	CCGGCTTCATACTTTTCGGC	59.623	55.000	0.00	0.00	0.00	5.54
1221	1251	8.407457	TCACATCGTTAGAAACATCAGAATAC	57.593	34.615	0.00	0.00	0.00	1.89
1222	1252	8.996024	TTCACATCGTTAGAAACATCAGAATA	57.004	30.769	0.00	0.00	0.00	1.75
1229	1259	4.688879	TCGCTTTCACATCGTTAGAAACAT	59.311	37.500	0.00	0.00	0.00	2.71
1236	1266	4.319190	CCAACTTTCGCTTTCACATCGTTA	60.319	41.667	0.00	0.00	0.00	3.18
1239	1269	2.223144	TCCAACTTTCGCTTTCACATCG	59.777	45.455	0.00	0.00	0.00	3.84
1248	1278	3.437049	GCAGACTAAATCCAACTTTCGCT	59.563	43.478	0.00	0.00	0.00	4.93
1278	1314	3.184628	TGATTCCAGTGGTTCTCCATCT	58.815	45.455	9.54	0.00	46.20	2.90
1291	1327	5.107133	GGTGATCATGCTTTTTGATTCCAG	58.893	41.667	0.00	0.00	34.03	3.86
1307	1343	4.562143	CGAAGATATGCTCATGGGTGATCA	60.562	45.833	0.00	0.00	35.21	2.92
1317	1353	5.221521	ACCTTTGCTATCGAAGATATGCTCA	60.222	40.000	0.00	0.00	45.12	4.26
1320	1356	5.466728	TGAACCTTTGCTATCGAAGATATGC	59.533	40.000	0.00	0.00	45.12	3.14
1330	1366	3.274288	CCCAGTCTGAACCTTTGCTATC	58.726	50.000	0.00	0.00	0.00	2.08
1389	2240	5.583061	ACTGTCGTCTCTTAGATACACTGAG	59.417	44.000	0.00	0.00	34.15	3.35
1525	2379	0.107703	GTCACATCCGCTCCATCCAA	60.108	55.000	0.00	0.00	0.00	3.53
1604	2462	1.133450	AGAGCTCCGCCCTGAATACTA	60.133	52.381	10.93	0.00	0.00	1.82
1654	2512	8.902806	ACTTTCCATATCGCTAATTTCAATCAA	58.097	29.630	0.00	0.00	0.00	2.57
1748	2612	2.977808	TCTCTCTTCCTGTTTCACCCT	58.022	47.619	0.00	0.00	0.00	4.34
1767	2631	4.526262	AGTAGATGACCAGCTATCACCATC	59.474	45.833	2.07	4.34	31.46	3.51
1768	2632	4.487804	AGTAGATGACCAGCTATCACCAT	58.512	43.478	2.07	0.00	31.46	3.55
1776	2640	2.704572	GCAACAAGTAGATGACCAGCT	58.295	47.619	0.00	0.00	0.00	4.24
1966	2830	1.065199	ACCATCACTTGCCATCATCGT	60.065	47.619	0.00	0.00	0.00	3.73
2098	2962	6.766429	TGATAAGATGCAGTGATCATTAGCT	58.234	36.000	15.09	0.00	0.00	3.32
2185	3065	0.704076	ATAGTTTTGCCCTGAGCCCA	59.296	50.000	0.00	0.00	42.71	5.36
2337	3232	2.245028	TCAGTAGTCTGATGCCTAGGGT	59.755	50.000	11.72	0.00	44.58	4.34
2376	3271	3.967987	CAATCTAGGGGCCTACAACTAGT	59.032	47.826	0.84	0.00	35.56	2.57
2435	3330	3.181439	GGAAGCACTCAATTAGGGGCTAT	60.181	47.826	6.95	0.00	38.55	2.97
2485	3380	0.391661	GCAAGAGAATGACCCGAGCA	60.392	55.000	0.00	0.00	0.00	4.26
2486	3381	0.107945	AGCAAGAGAATGACCCGAGC	60.108	55.000	0.00	0.00	0.00	5.03
2502	3397	4.835615	AGGAAGAAACAACTAGAGAGAGCA	59.164	41.667	0.00	0.00	0.00	4.26
2503	3398	5.400066	AGGAAGAAACAACTAGAGAGAGC	57.600	43.478	0.00	0.00	0.00	4.09
2599	3494	6.487668	TGAATTATAGAACCCACGATACTCGA	59.512	38.462	3.20	0.00	43.74	4.04
2600	3495	6.675026	TGAATTATAGAACCCACGATACTCG	58.325	40.000	0.00	0.00	46.93	4.18
2632	3527	6.659242	ACAATTTGGATCGGTTGAAGTAGAAT	59.341	34.615	0.78	0.00	0.00	2.40
2637	3532	3.506067	GGACAATTTGGATCGGTTGAAGT	59.494	43.478	0.78	0.00	0.00	3.01
2696	3591	3.248602	GCTACTTATTGGACCAATCTGCG	59.751	47.826	23.11	12.03	35.54	5.18
2698	3593	5.992217	GGTAGCTACTTATTGGACCAATCTG	59.008	44.000	23.11	17.89	35.54	2.90
2720	3615	5.948162	GCCATTATGGACAATCTGATATGGT	59.052	40.000	16.46	2.57	40.96	3.55
2818	3713	4.564372	CACTCTTGACATCAACTCATACGG	59.436	45.833	0.00	0.00	0.00	4.02
2874	3770	3.893200	TCTTCTCTCTCAACAAACGGGTA	59.107	43.478	0.00	0.00	0.00	3.69
2875	3771	2.698797	TCTTCTCTCTCAACAAACGGGT	59.301	45.455	0.00	0.00	0.00	5.28
2973	3869	3.324846	TCAGTACTGTGAAGGCAGACATT	59.675	43.478	21.99	0.00	39.62	2.71
3069	4040	4.525912	ATCAAGGCCTCACAAATCAAAC	57.474	40.909	5.23	0.00	0.00	2.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.