Multiple sequence alignment - TraesCS1A01G070600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G070600 | chr1A | 100.000 | 4553 | 0 | 0 | 1 | 4553 | 53458049 | 53453497 | 0.000000e+00 | 8408.0 |
1 | TraesCS1A01G070600 | chr1A | 89.331 | 553 | 42 | 10 | 1075 | 1623 | 367003971 | 367003432 | 0.000000e+00 | 678.0 |
2 | TraesCS1A01G070600 | chr1A | 95.455 | 110 | 5 | 0 | 1089 | 1198 | 366990022 | 366990131 | 4.680000e-40 | 176.0 |
3 | TraesCS1A01G070600 | chr1B | 90.914 | 3709 | 199 | 69 | 630 | 4287 | 88005434 | 88001813 | 0.000000e+00 | 4855.0 |
4 | TraesCS1A01G070600 | chr1B | 86.364 | 308 | 26 | 9 | 68 | 373 | 88006989 | 88006696 | 5.680000e-84 | 322.0 |
5 | TraesCS1A01G070600 | chr1B | 100.000 | 35 | 0 | 0 | 573 | 607 | 88005522 | 88005488 | 1.060000e-06 | 65.8 |
6 | TraesCS1A01G070600 | chr1D | 93.481 | 3206 | 134 | 29 | 630 | 3782 | 53967285 | 53964102 | 0.000000e+00 | 4693.0 |
7 | TraesCS1A01G070600 | chr1D | 84.050 | 721 | 63 | 17 | 3857 | 4553 | 53964009 | 53963317 | 0.000000e+00 | 647.0 |
8 | TraesCS1A01G070600 | chr1D | 88.038 | 209 | 17 | 4 | 105 | 313 | 53967798 | 53967598 | 1.640000e-59 | 241.0 |
9 | TraesCS1A01G070600 | chr1D | 97.297 | 37 | 1 | 0 | 574 | 610 | 53967372 | 53967336 | 3.800000e-06 | 63.9 |
10 | TraesCS1A01G070600 | chr5D | 93.280 | 1250 | 53 | 11 | 2380 | 3612 | 362895113 | 362893878 | 0.000000e+00 | 1814.0 |
11 | TraesCS1A01G070600 | chr5D | 88.305 | 590 | 47 | 11 | 1069 | 1655 | 362895726 | 362895156 | 0.000000e+00 | 688.0 |
12 | TraesCS1A01G070600 | chr5D | 90.964 | 166 | 15 | 0 | 1800 | 1965 | 455841037 | 455840872 | 1.650000e-54 | 224.0 |
13 | TraesCS1A01G070600 | chr5D | 90.698 | 129 | 11 | 1 | 2346 | 2474 | 68877087 | 68876960 | 2.180000e-38 | 171.0 |
14 | TraesCS1A01G070600 | chr5D | 75.177 | 282 | 36 | 20 | 845 | 1121 | 455867333 | 455867081 | 8.060000e-18 | 102.0 |
15 | TraesCS1A01G070600 | chr4A | 92.631 | 977 | 49 | 7 | 2650 | 3612 | 609791532 | 609790565 | 0.000000e+00 | 1384.0 |
16 | TraesCS1A01G070600 | chr4A | 93.478 | 276 | 18 | 0 | 2379 | 2654 | 609792552 | 609792277 | 1.180000e-110 | 411.0 |
17 | TraesCS1A01G070600 | chr4A | 90.604 | 298 | 25 | 1 | 1111 | 1408 | 609794222 | 609793928 | 4.270000e-105 | 392.0 |
18 | TraesCS1A01G070600 | chr4A | 73.607 | 682 | 125 | 41 | 2660 | 3318 | 497441026 | 497440377 | 1.280000e-50 | 211.0 |
19 | TraesCS1A01G070600 | chr4A | 93.069 | 101 | 5 | 2 | 769 | 868 | 609790450 | 609790549 | 3.670000e-31 | 147.0 |
20 | TraesCS1A01G070600 | chr5B | 88.528 | 1046 | 102 | 13 | 2378 | 3420 | 527294211 | 527295241 | 0.000000e+00 | 1251.0 |
21 | TraesCS1A01G070600 | chr2B | 91.143 | 350 | 28 | 2 | 1069 | 1418 | 818195 | 817849 | 5.330000e-129 | 472.0 |
22 | TraesCS1A01G070600 | chr2B | 85.455 | 275 | 28 | 7 | 1386 | 1657 | 816423 | 816158 | 4.490000e-70 | 276.0 |
23 | TraesCS1A01G070600 | chr2B | 98.214 | 112 | 2 | 0 | 2379 | 2490 | 816118 | 816007 | 3.590000e-46 | 196.0 |
24 | TraesCS1A01G070600 | chr2B | 76.846 | 298 | 51 | 15 | 2872 | 3166 | 464466748 | 464467030 | 7.890000e-33 | 152.0 |
25 | TraesCS1A01G070600 | chr2B | 84.932 | 73 | 11 | 0 | 2531 | 2603 | 464466398 | 464466470 | 1.760000e-09 | 75.0 |
26 | TraesCS1A01G070600 | chr7B | 82.410 | 307 | 39 | 11 | 1477 | 1781 | 563733411 | 563733704 | 2.100000e-63 | 254.0 |
27 | TraesCS1A01G070600 | chr7B | 73.556 | 658 | 126 | 32 | 2521 | 3166 | 418049680 | 418049059 | 1.660000e-49 | 207.0 |
28 | TraesCS1A01G070600 | chr7B | 83.951 | 162 | 15 | 9 | 2935 | 3092 | 302514019 | 302513865 | 1.320000e-30 | 145.0 |
29 | TraesCS1A01G070600 | chr7D | 80.592 | 304 | 45 | 11 | 1477 | 1778 | 526967442 | 526967733 | 5.930000e-54 | 222.0 |
30 | TraesCS1A01G070600 | chr7A | 73.239 | 710 | 140 | 33 | 2470 | 3166 | 464573337 | 464572665 | 3.570000e-51 | 213.0 |
31 | TraesCS1A01G070600 | chr7A | 79.868 | 303 | 47 | 11 | 1477 | 1778 | 606938059 | 606938348 | 4.620000e-50 | 209.0 |
32 | TraesCS1A01G070600 | chr7A | 92.308 | 104 | 8 | 0 | 2360 | 2463 | 728505163 | 728505060 | 1.020000e-31 | 148.0 |
33 | TraesCS1A01G070600 | chr5A | 81.955 | 266 | 30 | 11 | 1817 | 2078 | 672409797 | 672410048 | 4.620000e-50 | 209.0 |
34 | TraesCS1A01G070600 | chr4B | 74.952 | 519 | 94 | 25 | 2660 | 3166 | 119823385 | 119822891 | 5.970000e-49 | 206.0 |
35 | TraesCS1A01G070600 | chr4D | 72.953 | 684 | 132 | 38 | 2660 | 3318 | 84546200 | 84545545 | 6.010000e-44 | 189.0 |
36 | TraesCS1A01G070600 | chr3D | 91.045 | 134 | 8 | 1 | 2345 | 2474 | 594157369 | 594157236 | 1.300000e-40 | 178.0 |
37 | TraesCS1A01G070600 | chr3D | 96.875 | 32 | 1 | 0 | 2731 | 2762 | 51682778 | 51682809 | 2.000000e-03 | 54.7 |
38 | TraesCS1A01G070600 | chr3A | 83.708 | 178 | 29 | 0 | 1862 | 2039 | 468721143 | 468721320 | 7.830000e-38 | 169.0 |
39 | TraesCS1A01G070600 | chr2D | 77.778 | 297 | 47 | 15 | 2872 | 3166 | 392526129 | 392526408 | 1.010000e-36 | 165.0 |
40 | TraesCS1A01G070600 | chr2D | 84.932 | 73 | 11 | 0 | 2531 | 2603 | 392525779 | 392525851 | 1.760000e-09 | 75.0 |
41 | TraesCS1A01G070600 | chr3B | 93.750 | 96 | 5 | 1 | 2872 | 2966 | 797135330 | 797135235 | 4.750000e-30 | 143.0 |
42 | TraesCS1A01G070600 | chr3B | 86.275 | 51 | 7 | 0 | 2712 | 2762 | 82625842 | 82625892 | 6.360000e-04 | 56.5 |
43 | TraesCS1A01G070600 | chr2A | 84.932 | 73 | 11 | 0 | 2531 | 2603 | 530380445 | 530380517 | 1.760000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G070600 | chr1A | 53453497 | 53458049 | 4552 | True | 8408.000000 | 8408 | 100.000000 | 1 | 4553 | 1 | chr1A.!!$R1 | 4552 |
1 | TraesCS1A01G070600 | chr1A | 367003432 | 367003971 | 539 | True | 678.000000 | 678 | 89.331000 | 1075 | 1623 | 1 | chr1A.!!$R2 | 548 |
2 | TraesCS1A01G070600 | chr1B | 88001813 | 88006989 | 5176 | True | 1747.600000 | 4855 | 92.426000 | 68 | 4287 | 3 | chr1B.!!$R1 | 4219 |
3 | TraesCS1A01G070600 | chr1D | 53963317 | 53967798 | 4481 | True | 1411.225000 | 4693 | 90.716500 | 105 | 4553 | 4 | chr1D.!!$R1 | 4448 |
4 | TraesCS1A01G070600 | chr5D | 362893878 | 362895726 | 1848 | True | 1251.000000 | 1814 | 90.792500 | 1069 | 3612 | 2 | chr5D.!!$R4 | 2543 |
5 | TraesCS1A01G070600 | chr4A | 609790565 | 609794222 | 3657 | True | 729.000000 | 1384 | 92.237667 | 1111 | 3612 | 3 | chr4A.!!$R2 | 2501 |
6 | TraesCS1A01G070600 | chr4A | 497440377 | 497441026 | 649 | True | 211.000000 | 211 | 73.607000 | 2660 | 3318 | 1 | chr4A.!!$R1 | 658 |
7 | TraesCS1A01G070600 | chr5B | 527294211 | 527295241 | 1030 | False | 1251.000000 | 1251 | 88.528000 | 2378 | 3420 | 1 | chr5B.!!$F1 | 1042 |
8 | TraesCS1A01G070600 | chr2B | 816007 | 818195 | 2188 | True | 314.666667 | 472 | 91.604000 | 1069 | 2490 | 3 | chr2B.!!$R1 | 1421 |
9 | TraesCS1A01G070600 | chr7B | 418049059 | 418049680 | 621 | True | 207.000000 | 207 | 73.556000 | 2521 | 3166 | 1 | chr7B.!!$R2 | 645 |
10 | TraesCS1A01G070600 | chr7A | 464572665 | 464573337 | 672 | True | 213.000000 | 213 | 73.239000 | 2470 | 3166 | 1 | chr7A.!!$R1 | 696 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
56 | 57 | 0.108138 | GGGTGCTGCAGTACTGGTAG | 60.108 | 60.0 | 30.10 | 13.91 | 0.00 | 3.18 | F |
57 | 58 | 0.608640 | GGTGCTGCAGTACTGGTAGT | 59.391 | 55.0 | 30.10 | 0.00 | 0.00 | 2.73 | F |
132 | 133 | 0.661020 | CCGGAAAACACGCTTTCACT | 59.339 | 50.0 | 0.00 | 0.00 | 37.09 | 3.41 | F |
2256 | 5869 | 0.106819 | GCAGCCACAAGAGGATCCAT | 60.107 | 55.0 | 15.82 | 0.00 | 33.66 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1881 | 5494 | 0.748005 | AGCACTGCACGGTGAAGTTT | 60.748 | 50.000 | 19.22 | 8.02 | 39.34 | 2.66 | R |
2112 | 5725 | 2.022129 | CGTCGTTGGTGACTGAGGC | 61.022 | 63.158 | 0.00 | 0.00 | 36.71 | 4.70 | R |
2712 | 7089 | 1.226717 | GTTCTCCTCGCAGTAGCCG | 60.227 | 63.158 | 0.00 | 0.00 | 37.52 | 5.52 | R |
4009 | 8485 | 0.036858 | AGCCAAGAAGAGAGAACGGC | 60.037 | 55.000 | 0.00 | 0.00 | 38.36 | 5.68 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 9.947669 | TTTGTACGAGCTTCTATAAAGAGTATC | 57.052 | 33.333 | 0.00 | 0.00 | 31.96 | 2.24 |
31 | 32 | 8.097078 | TGTACGAGCTTCTATAAAGAGTATCC | 57.903 | 38.462 | 0.00 | 0.00 | 33.66 | 2.59 |
32 | 33 | 7.718314 | TGTACGAGCTTCTATAAAGAGTATCCA | 59.282 | 37.037 | 0.00 | 0.00 | 33.66 | 3.41 |
33 | 34 | 7.768807 | ACGAGCTTCTATAAAGAGTATCCAT | 57.231 | 36.000 | 0.00 | 0.00 | 33.66 | 3.41 |
34 | 35 | 8.865420 | ACGAGCTTCTATAAAGAGTATCCATA | 57.135 | 34.615 | 0.00 | 0.00 | 33.66 | 2.74 |
35 | 36 | 8.732531 | ACGAGCTTCTATAAAGAGTATCCATAC | 58.267 | 37.037 | 0.00 | 0.00 | 33.66 | 2.39 |
36 | 37 | 8.731605 | CGAGCTTCTATAAAGAGTATCCATACA | 58.268 | 37.037 | 0.00 | 0.00 | 35.74 | 2.29 |
38 | 39 | 9.030452 | AGCTTCTATAAAGAGTATCCATACAGG | 57.970 | 37.037 | 0.00 | 0.00 | 35.74 | 4.00 |
39 | 40 | 8.254508 | GCTTCTATAAAGAGTATCCATACAGGG | 58.745 | 40.741 | 0.00 | 0.00 | 35.74 | 4.45 |
40 | 41 | 9.315363 | CTTCTATAAAGAGTATCCATACAGGGT | 57.685 | 37.037 | 0.00 | 0.00 | 35.74 | 4.34 |
41 | 42 | 8.651589 | TCTATAAAGAGTATCCATACAGGGTG | 57.348 | 38.462 | 0.00 | 0.00 | 38.24 | 4.61 |
42 | 43 | 4.423625 | AAAGAGTATCCATACAGGGTGC | 57.576 | 45.455 | 0.00 | 0.00 | 38.24 | 5.01 |
44 | 45 | 2.968574 | AGAGTATCCATACAGGGTGCTG | 59.031 | 50.000 | 0.00 | 0.00 | 44.32 | 4.41 |
45 | 46 | 1.417890 | AGTATCCATACAGGGTGCTGC | 59.582 | 52.381 | 0.00 | 0.00 | 42.48 | 5.25 |
46 | 47 | 1.140852 | GTATCCATACAGGGTGCTGCA | 59.859 | 52.381 | 0.00 | 0.00 | 38.24 | 4.41 |
47 | 48 | 0.182061 | ATCCATACAGGGTGCTGCAG | 59.818 | 55.000 | 10.11 | 10.11 | 38.24 | 4.41 |
48 | 49 | 1.200760 | TCCATACAGGGTGCTGCAGT | 61.201 | 55.000 | 16.64 | 0.00 | 38.24 | 4.40 |
49 | 50 | 0.541392 | CCATACAGGGTGCTGCAGTA | 59.459 | 55.000 | 16.64 | 8.31 | 0.00 | 2.74 |
50 | 51 | 1.656652 | CATACAGGGTGCTGCAGTAC | 58.343 | 55.000 | 24.98 | 24.98 | 0.00 | 2.73 |
51 | 52 | 1.208052 | CATACAGGGTGCTGCAGTACT | 59.792 | 52.381 | 30.10 | 15.75 | 0.00 | 2.73 |
52 | 53 | 0.608130 | TACAGGGTGCTGCAGTACTG | 59.392 | 55.000 | 30.10 | 23.93 | 0.00 | 2.74 |
53 | 54 | 1.376424 | CAGGGTGCTGCAGTACTGG | 60.376 | 63.158 | 30.10 | 17.71 | 0.00 | 4.00 |
54 | 55 | 1.843376 | AGGGTGCTGCAGTACTGGT | 60.843 | 57.895 | 30.10 | 14.88 | 0.00 | 4.00 |
55 | 56 | 0.544357 | AGGGTGCTGCAGTACTGGTA | 60.544 | 55.000 | 30.10 | 5.45 | 0.00 | 3.25 |
56 | 57 | 0.108138 | GGGTGCTGCAGTACTGGTAG | 60.108 | 60.000 | 30.10 | 13.91 | 0.00 | 3.18 |
57 | 58 | 0.608640 | GGTGCTGCAGTACTGGTAGT | 59.391 | 55.000 | 30.10 | 0.00 | 0.00 | 2.73 |
58 | 59 | 1.822990 | GGTGCTGCAGTACTGGTAGTA | 59.177 | 52.381 | 30.10 | 10.33 | 0.00 | 1.82 |
74 | 75 | 8.375608 | ACTGGTAGTACGTAATAGAGTACATG | 57.624 | 38.462 | 2.44 | 0.00 | 43.98 | 3.21 |
84 | 85 | 8.038944 | ACGTAATAGAGTACATGTTTGTTCCAT | 58.961 | 33.333 | 2.30 | 0.00 | 37.28 | 3.41 |
132 | 133 | 0.661020 | CCGGAAAACACGCTTTCACT | 59.339 | 50.000 | 0.00 | 0.00 | 37.09 | 3.41 |
133 | 134 | 1.064952 | CCGGAAAACACGCTTTCACTT | 59.935 | 47.619 | 0.00 | 0.00 | 37.09 | 3.16 |
171 | 172 | 1.369692 | CAGTCCCTACAACACGCCA | 59.630 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
179 | 180 | 3.126343 | CCCTACAACACGCCATTAAAGTC | 59.874 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
191 | 192 | 1.689959 | TTAAAGTCGACCGTTCGCTC | 58.310 | 50.000 | 13.01 | 0.00 | 45.46 | 5.03 |
237 | 240 | 1.291877 | CGAGGAAGTGAGGTTTGCCG | 61.292 | 60.000 | 0.00 | 0.00 | 40.50 | 5.69 |
252 | 255 | 4.503007 | GGTTTGCCGAAAGAAAGAAAGAAC | 59.497 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
253 | 256 | 5.340803 | GTTTGCCGAAAGAAAGAAAGAACT | 58.659 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
254 | 257 | 5.576447 | TTGCCGAAAGAAAGAAAGAACTT | 57.424 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
303 | 306 | 2.556287 | GTGCCGTCAAAAGCTCGG | 59.444 | 61.111 | 6.43 | 6.43 | 45.94 | 4.63 |
325 | 328 | 3.958860 | AGCGCCAGCCCTCAACTT | 61.959 | 61.111 | 2.29 | 0.00 | 46.67 | 2.66 |
373 | 378 | 4.439057 | GGTAGAGATGCCGTGTTGATTTA | 58.561 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
374 | 379 | 4.270325 | GGTAGAGATGCCGTGTTGATTTAC | 59.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
375 | 380 | 4.207891 | AGAGATGCCGTGTTGATTTACT | 57.792 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
376 | 381 | 5.339008 | AGAGATGCCGTGTTGATTTACTA | 57.661 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
377 | 382 | 5.109903 | AGAGATGCCGTGTTGATTTACTAC | 58.890 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
378 | 383 | 4.827692 | AGATGCCGTGTTGATTTACTACA | 58.172 | 39.130 | 0.00 | 0.00 | 32.50 | 2.74 |
407 | 1247 | 7.665561 | ACCATTGTTGTATTAACATTTTGCC | 57.334 | 32.000 | 0.00 | 0.00 | 34.97 | 4.52 |
441 | 1284 | 7.497595 | TGGTTAATAGTATAGTCAACTGCTGG | 58.502 | 38.462 | 0.00 | 0.00 | 0.00 | 4.85 |
442 | 1285 | 7.125204 | TGGTTAATAGTATAGTCAACTGCTGGT | 59.875 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
444 | 1287 | 8.414778 | GTTAATAGTATAGTCAACTGCTGGTCT | 58.585 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
445 | 1288 | 7.425224 | AATAGTATAGTCAACTGCTGGTCTT | 57.575 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
446 | 1289 | 5.078411 | AGTATAGTCAACTGCTGGTCTTG | 57.922 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
447 | 1290 | 2.169832 | TAGTCAACTGCTGGTCTTGC | 57.830 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
449 | 1292 | 0.819259 | GTCAACTGCTGGTCTTGCCA | 60.819 | 55.000 | 0.00 | 0.00 | 46.95 | 4.92 |
458 | 1301 | 2.189594 | TGGTCTTGCCAAGTCATCTG | 57.810 | 50.000 | 4.04 | 0.00 | 45.94 | 2.90 |
459 | 1302 | 1.421268 | TGGTCTTGCCAAGTCATCTGT | 59.579 | 47.619 | 4.04 | 0.00 | 45.94 | 3.41 |
461 | 1304 | 3.265791 | GGTCTTGCCAAGTCATCTGTAG | 58.734 | 50.000 | 4.04 | 0.00 | 37.17 | 2.74 |
463 | 1306 | 2.012673 | CTTGCCAAGTCATCTGTAGCC | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
465 | 1308 | 1.350684 | TGCCAAGTCATCTGTAGCCAA | 59.649 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
466 | 1309 | 2.224744 | TGCCAAGTCATCTGTAGCCAAA | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
468 | 1311 | 3.445096 | GCCAAGTCATCTGTAGCCAAATT | 59.555 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
469 | 1312 | 4.082026 | GCCAAGTCATCTGTAGCCAAATTT | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
470 | 1313 | 5.125417 | GCCAAGTCATCTGTAGCCAAATTTA | 59.875 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
471 | 1314 | 6.183360 | GCCAAGTCATCTGTAGCCAAATTTAT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
472 | 1315 | 7.013274 | GCCAAGTCATCTGTAGCCAAATTTATA | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
474 | 1317 | 7.736447 | AGTCATCTGTAGCCAAATTTATAGC | 57.264 | 36.000 | 0.00 | 0.00 | 0.00 | 2.97 |
475 | 1318 | 6.712547 | AGTCATCTGTAGCCAAATTTATAGCC | 59.287 | 38.462 | 0.00 | 0.00 | 0.00 | 3.93 |
477 | 1320 | 5.284861 | TCTGTAGCCAAATTTATAGCCGA | 57.715 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
478 | 1321 | 5.054477 | TCTGTAGCCAAATTTATAGCCGAC | 58.946 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
479 | 1322 | 4.771903 | TGTAGCCAAATTTATAGCCGACA | 58.228 | 39.130 | 0.00 | 0.16 | 0.00 | 4.35 |
480 | 1323 | 5.186942 | TGTAGCCAAATTTATAGCCGACAA | 58.813 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
485 | 1328 | 5.065474 | GCCAAATTTATAGCCGACAAGTACA | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
486 | 1329 | 6.403855 | GCCAAATTTATAGCCGACAAGTACAA | 60.404 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
487 | 1330 | 7.681065 | GCCAAATTTATAGCCGACAAGTACAAT | 60.681 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
488 | 1331 | 8.832521 | CCAAATTTATAGCCGACAAGTACAATA | 58.167 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
489 | 1332 | 9.864034 | CAAATTTATAGCCGACAAGTACAATAG | 57.136 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
490 | 1333 | 9.609346 | AAATTTATAGCCGACAAGTACAATAGT | 57.391 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
491 | 1334 | 9.609346 | AATTTATAGCCGACAAGTACAATAGTT | 57.391 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
493 | 1336 | 9.520204 | TTTATAGCCGACAAGTACAATAGTTAC | 57.480 | 33.333 | 0.00 | 0.00 | 0.00 | 2.50 |
495 | 1338 | 5.974108 | AGCCGACAAGTACAATAGTTACAT | 58.026 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
496 | 1339 | 5.810587 | AGCCGACAAGTACAATAGTTACATG | 59.189 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
497 | 1340 | 5.579511 | GCCGACAAGTACAATAGTTACATGT | 59.420 | 40.000 | 2.69 | 2.69 | 0.00 | 3.21 |
498 | 1341 | 6.753279 | GCCGACAAGTACAATAGTTACATGTA | 59.247 | 38.462 | 0.08 | 0.08 | 0.00 | 2.29 |
499 | 1342 | 7.276218 | GCCGACAAGTACAATAGTTACATGTAA | 59.724 | 37.037 | 14.35 | 14.35 | 31.85 | 2.41 |
508 | 1351 | 8.335532 | ACAATAGTTACATGTAAATGTGCACT | 57.664 | 30.769 | 24.72 | 16.39 | 36.08 | 4.40 |
509 | 1352 | 8.236586 | ACAATAGTTACATGTAAATGTGCACTG | 58.763 | 33.333 | 24.72 | 16.27 | 36.08 | 3.66 |
511 | 1354 | 4.761739 | AGTTACATGTAAATGTGCACTGCT | 59.238 | 37.500 | 19.63 | 6.11 | 36.08 | 4.24 |
514 | 1357 | 4.947645 | ACATGTAAATGTGCACTGCTTTT | 58.052 | 34.783 | 19.41 | 14.03 | 32.79 | 2.27 |
515 | 1358 | 5.358922 | ACATGTAAATGTGCACTGCTTTTT | 58.641 | 33.333 | 19.41 | 11.79 | 32.79 | 1.94 |
539 | 1461 | 9.806448 | TTTTGATATAGCCAAATCTATAGCCAA | 57.194 | 29.630 | 0.00 | 4.85 | 37.20 | 4.52 |
543 | 1465 | 9.618890 | GATATAGCCAAATCTATAGCCAAATCA | 57.381 | 33.333 | 0.00 | 0.00 | 35.63 | 2.57 |
546 | 1468 | 5.413833 | AGCCAAATCTATAGCCAAATCATCG | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 3.84 |
550 | 1472 | 4.955811 | TCTATAGCCAAATCATCGGTGT | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 4.16 |
555 | 1477 | 4.689612 | AGCCAAATCATCGGTGTAGTAT | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
557 | 1479 | 5.057149 | AGCCAAATCATCGGTGTAGTATTC | 58.943 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
561 | 1483 | 3.620929 | TCATCGGTGTAGTATTCTCGC | 57.379 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
562 | 1484 | 2.946990 | TCATCGGTGTAGTATTCTCGCA | 59.053 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
564 | 1486 | 3.416119 | TCGGTGTAGTATTCTCGCAAG | 57.584 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
624 | 1604 | 4.514577 | CGCAGAGGCACGGGGTAG | 62.515 | 72.222 | 0.00 | 0.00 | 41.24 | 3.18 |
625 | 1605 | 3.391382 | GCAGAGGCACGGGGTAGT | 61.391 | 66.667 | 0.00 | 0.00 | 40.72 | 2.73 |
626 | 1606 | 2.056223 | GCAGAGGCACGGGGTAGTA | 61.056 | 63.158 | 0.00 | 0.00 | 40.72 | 1.82 |
627 | 1607 | 1.400530 | GCAGAGGCACGGGGTAGTAT | 61.401 | 60.000 | 0.00 | 0.00 | 40.72 | 2.12 |
628 | 1608 | 1.120530 | CAGAGGCACGGGGTAGTATT | 58.879 | 55.000 | 0.00 | 0.00 | 0.00 | 1.89 |
638 | 1649 | 1.538419 | GGGGTAGTATTGTCGCAGAGC | 60.538 | 57.143 | 0.00 | 0.00 | 36.95 | 4.09 |
674 | 1685 | 3.053896 | CCGCCTCCCGTCCAAAAC | 61.054 | 66.667 | 0.00 | 0.00 | 34.38 | 2.43 |
752 | 1769 | 1.727335 | GGAAACGCGAGGAGAAAGAAG | 59.273 | 52.381 | 15.93 | 0.00 | 0.00 | 2.85 |
753 | 1770 | 2.609737 | GGAAACGCGAGGAGAAAGAAGA | 60.610 | 50.000 | 15.93 | 0.00 | 0.00 | 2.87 |
755 | 1772 | 2.355717 | ACGCGAGGAGAAAGAAGAAG | 57.644 | 50.000 | 15.93 | 0.00 | 0.00 | 2.85 |
756 | 1773 | 1.887198 | ACGCGAGGAGAAAGAAGAAGA | 59.113 | 47.619 | 15.93 | 0.00 | 0.00 | 2.87 |
757 | 1774 | 2.296471 | ACGCGAGGAGAAAGAAGAAGAA | 59.704 | 45.455 | 15.93 | 0.00 | 0.00 | 2.52 |
758 | 1775 | 2.920490 | CGCGAGGAGAAAGAAGAAGAAG | 59.080 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
759 | 1776 | 3.366476 | CGCGAGGAGAAAGAAGAAGAAGA | 60.366 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
760 | 1777 | 4.561105 | GCGAGGAGAAAGAAGAAGAAGAA | 58.439 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
761 | 1778 | 4.991687 | GCGAGGAGAAAGAAGAAGAAGAAA | 59.008 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
1056 | 2115 | 2.069430 | GCTCCTCCTCCCCTTCCTG | 61.069 | 68.421 | 0.00 | 0.00 | 0.00 | 3.86 |
1811 | 5424 | 1.980772 | CGACCCCCACCGTCTACTT | 60.981 | 63.158 | 0.00 | 0.00 | 0.00 | 2.24 |
2081 | 5694 | 1.298157 | TGCAATAGGCTGTGCGACAC | 61.298 | 55.000 | 16.98 | 3.44 | 43.93 | 3.67 |
2127 | 5740 | 2.738521 | CCGCCTCAGTCACCAACG | 60.739 | 66.667 | 0.00 | 0.00 | 0.00 | 4.10 |
2175 | 5788 | 3.459378 | GATCGCCTTCGCCGTCGTA | 62.459 | 63.158 | 0.00 | 0.00 | 36.96 | 3.43 |
2256 | 5869 | 0.106819 | GCAGCCACAAGAGGATCCAT | 60.107 | 55.000 | 15.82 | 0.00 | 33.66 | 3.41 |
2275 | 5888 | 0.539986 | TAACTCCGTCCAGCCCAATC | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2282 | 5895 | 2.825836 | CCAGCCCAATCTCGCCAC | 60.826 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
2289 | 5902 | 2.746277 | AATCTCGCCACCAACGCC | 60.746 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
2712 | 7089 | 4.477975 | CACCTCGTCGGCCTCGTC | 62.478 | 72.222 | 14.88 | 0.00 | 37.69 | 4.20 |
3534 | 7939 | 1.153549 | GACGTCCATGGAGCTGTCC | 60.154 | 63.158 | 16.81 | 0.49 | 44.24 | 4.02 |
3559 | 7964 | 1.141881 | CTCGCGGAGTAGCCACATT | 59.858 | 57.895 | 6.13 | 0.00 | 35.94 | 2.71 |
3622 | 8043 | 1.519455 | GCGAGGTCCTTGGATCGTG | 60.519 | 63.158 | 8.30 | 3.20 | 37.49 | 4.35 |
3729 | 8150 | 4.537936 | TGATTATCTCACTCGTCTCACG | 57.462 | 45.455 | 0.00 | 0.00 | 44.19 | 4.35 |
3779 | 8239 | 7.199078 | TGATCGTATTGAACTGATCTCTTCTG | 58.801 | 38.462 | 0.00 | 0.00 | 38.18 | 3.02 |
3790 | 8250 | 6.164876 | ACTGATCTCTTCTGTCTCAACAATG | 58.835 | 40.000 | 0.00 | 0.00 | 34.24 | 2.82 |
3795 | 8255 | 4.564041 | TCTTCTGTCTCAACAATGCTCTC | 58.436 | 43.478 | 0.00 | 0.00 | 34.24 | 3.20 |
3812 | 8272 | 2.174349 | CTGCGTTCGAGCCTTTGC | 59.826 | 61.111 | 0.00 | 0.00 | 36.02 | 3.68 |
3826 | 8286 | 0.101759 | CTTTGCGGCATCATTCCCAG | 59.898 | 55.000 | 2.28 | 0.00 | 0.00 | 4.45 |
3827 | 8287 | 1.947597 | TTTGCGGCATCATTCCCAGC | 61.948 | 55.000 | 2.28 | 0.00 | 0.00 | 4.85 |
3828 | 8288 | 2.829914 | GCGGCATCATTCCCAGCA | 60.830 | 61.111 | 0.00 | 0.00 | 0.00 | 4.41 |
3829 | 8289 | 2.198287 | GCGGCATCATTCCCAGCAT | 61.198 | 57.895 | 0.00 | 0.00 | 0.00 | 3.79 |
3830 | 8290 | 1.658114 | CGGCATCATTCCCAGCATG | 59.342 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
3831 | 8291 | 0.820482 | CGGCATCATTCCCAGCATGA | 60.820 | 55.000 | 0.00 | 0.00 | 39.69 | 3.07 |
3832 | 8292 | 1.629043 | GGCATCATTCCCAGCATGAT | 58.371 | 50.000 | 0.00 | 0.00 | 41.26 | 2.45 |
3833 | 8293 | 2.799017 | GGCATCATTCCCAGCATGATA | 58.201 | 47.619 | 0.00 | 0.00 | 39.00 | 2.15 |
3834 | 8294 | 3.159472 | GGCATCATTCCCAGCATGATAA | 58.841 | 45.455 | 0.00 | 0.00 | 39.00 | 1.75 |
3835 | 8295 | 3.767673 | GGCATCATTCCCAGCATGATAAT | 59.232 | 43.478 | 0.00 | 0.00 | 39.00 | 1.28 |
3836 | 8296 | 4.222145 | GGCATCATTCCCAGCATGATAATT | 59.778 | 41.667 | 0.00 | 0.00 | 39.00 | 1.40 |
3837 | 8297 | 5.279809 | GGCATCATTCCCAGCATGATAATTT | 60.280 | 40.000 | 0.00 | 0.00 | 39.00 | 1.82 |
3838 | 8298 | 5.867716 | GCATCATTCCCAGCATGATAATTTC | 59.132 | 40.000 | 0.00 | 0.00 | 39.00 | 2.17 |
3839 | 8299 | 6.295123 | GCATCATTCCCAGCATGATAATTTCT | 60.295 | 38.462 | 0.00 | 0.00 | 39.00 | 2.52 |
3840 | 8300 | 6.889301 | TCATTCCCAGCATGATAATTTCTC | 57.111 | 37.500 | 0.00 | 0.00 | 39.69 | 2.87 |
3841 | 8301 | 5.771666 | TCATTCCCAGCATGATAATTTCTCC | 59.228 | 40.000 | 0.00 | 0.00 | 39.69 | 3.71 |
3842 | 8302 | 4.104383 | TCCCAGCATGATAATTTCTCCC | 57.896 | 45.455 | 0.00 | 0.00 | 39.69 | 4.30 |
3843 | 8303 | 2.816087 | CCCAGCATGATAATTTCTCCCG | 59.184 | 50.000 | 0.00 | 0.00 | 39.69 | 5.14 |
3844 | 8304 | 3.496692 | CCCAGCATGATAATTTCTCCCGA | 60.497 | 47.826 | 0.00 | 0.00 | 39.69 | 5.14 |
3845 | 8305 | 4.330250 | CCAGCATGATAATTTCTCCCGAT | 58.670 | 43.478 | 0.00 | 0.00 | 39.69 | 4.18 |
3846 | 8306 | 4.763793 | CCAGCATGATAATTTCTCCCGATT | 59.236 | 41.667 | 0.00 | 0.00 | 39.69 | 3.34 |
3847 | 8307 | 5.939883 | CCAGCATGATAATTTCTCCCGATTA | 59.060 | 40.000 | 0.00 | 0.00 | 39.69 | 1.75 |
3848 | 8308 | 6.128172 | CCAGCATGATAATTTCTCCCGATTAC | 60.128 | 42.308 | 0.00 | 0.00 | 39.69 | 1.89 |
3849 | 8309 | 5.940470 | AGCATGATAATTTCTCCCGATTACC | 59.060 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3850 | 8310 | 5.123979 | GCATGATAATTTCTCCCGATTACCC | 59.876 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3851 | 8311 | 6.476378 | CATGATAATTTCTCCCGATTACCCT | 58.524 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3871 | 8346 | 2.900122 | ACGAATCATTGCGTTCCAAG | 57.100 | 45.000 | 0.00 | 0.00 | 37.48 | 3.61 |
3877 | 8353 | 0.314935 | CATTGCGTTCCAAGCCACTT | 59.685 | 50.000 | 0.00 | 0.00 | 36.76 | 3.16 |
3879 | 8355 | 0.820871 | TTGCGTTCCAAGCCACTTTT | 59.179 | 45.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3919 | 8395 | 1.391157 | TTGCGTCCCAAGCAGCTTTT | 61.391 | 50.000 | 4.38 | 0.00 | 46.01 | 2.27 |
3920 | 8396 | 1.363807 | GCGTCCCAAGCAGCTTTTT | 59.636 | 52.632 | 4.38 | 0.00 | 34.19 | 1.94 |
3924 | 8400 | 1.373371 | CCCAAGCAGCTTTTTCGGC | 60.373 | 57.895 | 4.38 | 0.00 | 0.00 | 5.54 |
3934 | 8410 | 1.135286 | GCTTTTTCGGCCATTCAGGAG | 60.135 | 52.381 | 2.24 | 0.00 | 41.22 | 3.69 |
3999 | 8475 | 2.346803 | TGAACAGATCAAAGCGCTACC | 58.653 | 47.619 | 12.05 | 0.00 | 34.30 | 3.18 |
4000 | 8476 | 2.289382 | TGAACAGATCAAAGCGCTACCA | 60.289 | 45.455 | 12.05 | 0.00 | 34.30 | 3.25 |
4025 | 8501 | 1.678269 | CGCGCCGTTCTCTCTTCTTG | 61.678 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4030 | 8506 | 2.342179 | CCGTTCTCTCTTCTTGGCTTC | 58.658 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4031 | 8507 | 2.342179 | CGTTCTCTCTTCTTGGCTTCC | 58.658 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
4051 | 8530 | 1.065251 | CGGTCTCCGGTCTACTAAAGC | 59.935 | 57.143 | 0.00 | 0.00 | 44.15 | 3.51 |
4080 | 8559 | 6.389906 | AGCGGTCAAATTTCTTTATTCCAAG | 58.610 | 36.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4081 | 8560 | 6.015434 | AGCGGTCAAATTTCTTTATTCCAAGT | 60.015 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4082 | 8561 | 6.645003 | GCGGTCAAATTTCTTTATTCCAAGTT | 59.355 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
4083 | 8562 | 7.148804 | GCGGTCAAATTTCTTTATTCCAAGTTC | 60.149 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4084 | 8563 | 7.328493 | CGGTCAAATTTCTTTATTCCAAGTTCC | 59.672 | 37.037 | 0.00 | 0.00 | 0.00 | 3.62 |
4088 | 8572 | 8.773645 | CAAATTTCTTTATTCCAAGTTCCAACC | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.77 |
4091 | 8575 | 5.459505 | TCTTTATTCCAAGTTCCAACCCAA | 58.540 | 37.500 | 0.00 | 0.00 | 0.00 | 4.12 |
4102 | 8586 | 1.442520 | CAACCCAAACGCATCGCTG | 60.443 | 57.895 | 0.00 | 0.00 | 0.00 | 5.18 |
4135 | 8619 | 3.832171 | GTTCGCTCGCTGTCGCTG | 61.832 | 66.667 | 0.00 | 0.00 | 35.26 | 5.18 |
4172 | 8656 | 4.408821 | TTCCTGCCGGCGAGCAAT | 62.409 | 61.111 | 23.90 | 0.00 | 43.52 | 3.56 |
4173 | 8657 | 4.838152 | TCCTGCCGGCGAGCAATC | 62.838 | 66.667 | 23.90 | 0.00 | 43.52 | 2.67 |
4195 | 8679 | 1.806542 | CTCGGTGTGATTTTGGGTCTG | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4238 | 8722 | 1.005394 | TCGTTTTCTCCGGGCACTC | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
4290 | 8792 | 1.008538 | GTGCAGTTTCGGCAACCAG | 60.009 | 57.895 | 0.00 | 0.00 | 43.91 | 4.00 |
4291 | 8793 | 2.192861 | TGCAGTTTCGGCAACCAGG | 61.193 | 57.895 | 0.00 | 0.00 | 38.54 | 4.45 |
4323 | 8825 | 2.126031 | GGTCAGGACGAAGCGGAC | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4353 | 8855 | 3.863424 | TCAATTTCAACGCCGATCTCTAC | 59.137 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
4364 | 8866 | 4.034858 | CGCCGATCTCTACACAAACTACTA | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
4365 | 8867 | 5.272397 | GCCGATCTCTACACAAACTACTAC | 58.728 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
4366 | 8868 | 5.066246 | GCCGATCTCTACACAAACTACTACT | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4367 | 8869 | 6.487960 | CCGATCTCTACACAAACTACTACTG | 58.512 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4368 | 8870 | 6.093771 | CCGATCTCTACACAAACTACTACTGT | 59.906 | 42.308 | 0.00 | 0.00 | 0.00 | 3.55 |
4369 | 8871 | 7.279536 | CCGATCTCTACACAAACTACTACTGTA | 59.720 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
4410 | 8912 | 2.228582 | TCACCATCGCAAAAATGACAGG | 59.771 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
4425 | 8927 | 3.558033 | TGACAGGTTTTTAGTTCCCACC | 58.442 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
4467 | 8969 | 1.516169 | GGCTGCGGTTTTAATGGCG | 60.516 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
4484 | 8986 | 1.957186 | CGGTCCGGCGAACTCAAAA | 60.957 | 57.895 | 9.30 | 0.00 | 0.00 | 2.44 |
4491 | 8993 | 2.288458 | CCGGCGAACTCAAAAAGTACAA | 59.712 | 45.455 | 9.30 | 0.00 | 37.17 | 2.41 |
4494 | 8996 | 3.668656 | GGCGAACTCAAAAAGTACAATGC | 59.331 | 43.478 | 0.00 | 0.00 | 37.17 | 3.56 |
4495 | 8997 | 4.537015 | GCGAACTCAAAAAGTACAATGCT | 58.463 | 39.130 | 0.00 | 0.00 | 37.17 | 3.79 |
4502 | 9004 | 6.472163 | ACTCAAAAAGTACAATGCTCAAAACG | 59.528 | 34.615 | 0.00 | 0.00 | 36.07 | 3.60 |
4503 | 9005 | 6.556212 | TCAAAAAGTACAATGCTCAAAACGA | 58.444 | 32.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4506 | 9008 | 7.623268 | AAAAGTACAATGCTCAAAACGAATC | 57.377 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4508 | 9010 | 6.312399 | AGTACAATGCTCAAAACGAATCAA | 57.688 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4510 | 9012 | 3.974401 | ACAATGCTCAAAACGAATCAACG | 59.026 | 39.130 | 0.00 | 0.00 | 39.31 | 4.10 |
4516 | 9018 | 5.229052 | TGCTCAAAACGAATCAACGAAAAAG | 59.771 | 36.000 | 0.00 | 0.00 | 37.03 | 2.27 |
4517 | 9019 | 5.454232 | GCTCAAAACGAATCAACGAAAAAGA | 59.546 | 36.000 | 0.00 | 0.00 | 37.03 | 2.52 |
4518 | 9020 | 6.142320 | GCTCAAAACGAATCAACGAAAAAGAT | 59.858 | 34.615 | 0.00 | 0.00 | 37.03 | 2.40 |
4519 | 9021 | 7.375230 | TCAAAACGAATCAACGAAAAAGATG | 57.625 | 32.000 | 0.00 | 0.00 | 37.03 | 2.90 |
4522 | 9024 | 7.552848 | AAACGAATCAACGAAAAAGATGATG | 57.447 | 32.000 | 0.00 | 0.00 | 34.53 | 3.07 |
4523 | 9025 | 5.631026 | ACGAATCAACGAAAAAGATGATGG | 58.369 | 37.500 | 0.00 | 0.00 | 34.53 | 3.51 |
4525 | 9027 | 6.072728 | ACGAATCAACGAAAAAGATGATGGAA | 60.073 | 34.615 | 0.00 | 0.00 | 34.53 | 3.53 |
4526 | 9028 | 6.968904 | CGAATCAACGAAAAAGATGATGGAAT | 59.031 | 34.615 | 0.00 | 0.00 | 34.53 | 3.01 |
4527 | 9029 | 7.044510 | CGAATCAACGAAAAAGATGATGGAATG | 60.045 | 37.037 | 0.00 | 0.00 | 34.53 | 2.67 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 9.947669 | GATACTCTTTATAGAAGCTCGTACAAA | 57.052 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
5 | 6 | 8.566260 | GGATACTCTTTATAGAAGCTCGTACAA | 58.434 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
6 | 7 | 7.718314 | TGGATACTCTTTATAGAAGCTCGTACA | 59.282 | 37.037 | 0.00 | 0.00 | 37.61 | 2.90 |
7 | 8 | 8.097078 | TGGATACTCTTTATAGAAGCTCGTAC | 57.903 | 38.462 | 0.00 | 0.00 | 37.61 | 3.67 |
8 | 9 | 8.865420 | ATGGATACTCTTTATAGAAGCTCGTA | 57.135 | 34.615 | 0.00 | 0.00 | 37.61 | 3.43 |
9 | 10 | 7.768807 | ATGGATACTCTTTATAGAAGCTCGT | 57.231 | 36.000 | 0.00 | 0.00 | 37.61 | 4.18 |
10 | 11 | 8.731605 | TGTATGGATACTCTTTATAGAAGCTCG | 58.268 | 37.037 | 0.00 | 0.00 | 34.41 | 5.03 |
12 | 13 | 9.030452 | CCTGTATGGATACTCTTTATAGAAGCT | 57.970 | 37.037 | 0.00 | 0.00 | 38.35 | 3.74 |
13 | 14 | 8.254508 | CCCTGTATGGATACTCTTTATAGAAGC | 58.745 | 40.741 | 0.00 | 0.00 | 38.35 | 3.86 |
14 | 15 | 9.315363 | ACCCTGTATGGATACTCTTTATAGAAG | 57.685 | 37.037 | 0.00 | 0.00 | 38.35 | 2.85 |
15 | 16 | 9.090103 | CACCCTGTATGGATACTCTTTATAGAA | 57.910 | 37.037 | 0.00 | 0.00 | 38.35 | 2.10 |
16 | 17 | 7.178628 | GCACCCTGTATGGATACTCTTTATAGA | 59.821 | 40.741 | 0.00 | 0.00 | 38.35 | 1.98 |
17 | 18 | 7.179338 | AGCACCCTGTATGGATACTCTTTATAG | 59.821 | 40.741 | 0.00 | 0.00 | 38.35 | 1.31 |
18 | 19 | 7.016914 | AGCACCCTGTATGGATACTCTTTATA | 58.983 | 38.462 | 0.00 | 0.00 | 38.35 | 0.98 |
19 | 20 | 5.846714 | AGCACCCTGTATGGATACTCTTTAT | 59.153 | 40.000 | 0.00 | 0.00 | 38.35 | 1.40 |
20 | 21 | 5.070446 | CAGCACCCTGTATGGATACTCTTTA | 59.930 | 44.000 | 0.00 | 0.00 | 38.35 | 1.85 |
21 | 22 | 4.040755 | AGCACCCTGTATGGATACTCTTT | 58.959 | 43.478 | 0.00 | 0.00 | 38.35 | 2.52 |
22 | 23 | 3.389329 | CAGCACCCTGTATGGATACTCTT | 59.611 | 47.826 | 0.00 | 0.00 | 38.35 | 2.85 |
23 | 24 | 2.968574 | CAGCACCCTGTATGGATACTCT | 59.031 | 50.000 | 0.00 | 0.00 | 38.35 | 3.24 |
24 | 25 | 2.548920 | GCAGCACCCTGTATGGATACTC | 60.549 | 54.545 | 0.00 | 0.00 | 41.26 | 2.59 |
25 | 26 | 1.417890 | GCAGCACCCTGTATGGATACT | 59.582 | 52.381 | 0.00 | 0.00 | 41.26 | 2.12 |
26 | 27 | 1.140852 | TGCAGCACCCTGTATGGATAC | 59.859 | 52.381 | 0.00 | 0.00 | 41.26 | 2.24 |
27 | 28 | 1.417517 | CTGCAGCACCCTGTATGGATA | 59.582 | 52.381 | 0.00 | 0.00 | 41.26 | 2.59 |
28 | 29 | 0.182061 | CTGCAGCACCCTGTATGGAT | 59.818 | 55.000 | 0.00 | 0.00 | 41.26 | 3.41 |
29 | 30 | 1.200760 | ACTGCAGCACCCTGTATGGA | 61.201 | 55.000 | 15.27 | 0.00 | 41.26 | 3.41 |
30 | 31 | 0.541392 | TACTGCAGCACCCTGTATGG | 59.459 | 55.000 | 15.27 | 0.00 | 41.26 | 2.74 |
31 | 32 | 1.208052 | AGTACTGCAGCACCCTGTATG | 59.792 | 52.381 | 15.27 | 0.00 | 41.26 | 2.39 |
32 | 33 | 1.208052 | CAGTACTGCAGCACCCTGTAT | 59.792 | 52.381 | 15.27 | 0.00 | 41.26 | 2.29 |
33 | 34 | 0.608130 | CAGTACTGCAGCACCCTGTA | 59.392 | 55.000 | 15.27 | 0.00 | 41.26 | 2.74 |
34 | 35 | 1.372683 | CAGTACTGCAGCACCCTGT | 59.627 | 57.895 | 15.27 | 0.00 | 41.26 | 4.00 |
35 | 36 | 1.376424 | CCAGTACTGCAGCACCCTG | 60.376 | 63.158 | 17.86 | 13.75 | 42.13 | 4.45 |
36 | 37 | 0.544357 | TACCAGTACTGCAGCACCCT | 60.544 | 55.000 | 17.86 | 1.06 | 0.00 | 4.34 |
37 | 38 | 0.108138 | CTACCAGTACTGCAGCACCC | 60.108 | 60.000 | 17.86 | 0.00 | 0.00 | 4.61 |
38 | 39 | 0.608640 | ACTACCAGTACTGCAGCACC | 59.391 | 55.000 | 17.86 | 1.18 | 0.00 | 5.01 |
39 | 40 | 2.731341 | CGTACTACCAGTACTGCAGCAC | 60.731 | 54.545 | 17.86 | 12.04 | 46.68 | 4.40 |
40 | 41 | 1.471287 | CGTACTACCAGTACTGCAGCA | 59.529 | 52.381 | 17.86 | 0.00 | 46.68 | 4.41 |
41 | 42 | 1.471684 | ACGTACTACCAGTACTGCAGC | 59.528 | 52.381 | 17.86 | 0.00 | 46.68 | 5.25 |
42 | 43 | 4.952262 | TTACGTACTACCAGTACTGCAG | 57.048 | 45.455 | 17.86 | 13.48 | 46.68 | 4.41 |
43 | 44 | 6.348498 | TCTATTACGTACTACCAGTACTGCA | 58.652 | 40.000 | 17.86 | 6.31 | 46.68 | 4.41 |
44 | 45 | 6.481644 | ACTCTATTACGTACTACCAGTACTGC | 59.518 | 42.308 | 17.86 | 1.61 | 46.68 | 4.40 |
45 | 46 | 8.973378 | GTACTCTATTACGTACTACCAGTACTG | 58.027 | 40.741 | 16.34 | 16.34 | 46.68 | 2.74 |
46 | 47 | 8.696374 | TGTACTCTATTACGTACTACCAGTACT | 58.304 | 37.037 | 22.49 | 0.00 | 46.68 | 2.73 |
47 | 48 | 8.873215 | TGTACTCTATTACGTACTACCAGTAC | 57.127 | 38.462 | 19.10 | 19.10 | 45.71 | 2.73 |
48 | 49 | 9.481340 | CATGTACTCTATTACGTACTACCAGTA | 57.519 | 37.037 | 0.00 | 0.00 | 37.47 | 2.74 |
49 | 50 | 7.989741 | ACATGTACTCTATTACGTACTACCAGT | 59.010 | 37.037 | 0.00 | 0.40 | 37.47 | 4.00 |
50 | 51 | 8.375608 | ACATGTACTCTATTACGTACTACCAG | 57.624 | 38.462 | 0.00 | 0.00 | 37.47 | 4.00 |
51 | 52 | 8.737168 | AACATGTACTCTATTACGTACTACCA | 57.263 | 34.615 | 0.00 | 0.00 | 37.47 | 3.25 |
52 | 53 | 9.443283 | CAAACATGTACTCTATTACGTACTACC | 57.557 | 37.037 | 0.00 | 0.00 | 37.47 | 3.18 |
53 | 54 | 9.994432 | ACAAACATGTACTCTATTACGTACTAC | 57.006 | 33.333 | 0.00 | 0.00 | 37.47 | 2.73 |
55 | 56 | 9.565213 | GAACAAACATGTACTCTATTACGTACT | 57.435 | 33.333 | 0.00 | 0.00 | 37.47 | 2.73 |
56 | 57 | 8.801913 | GGAACAAACATGTACTCTATTACGTAC | 58.198 | 37.037 | 0.00 | 0.00 | 37.19 | 3.67 |
57 | 58 | 8.522003 | TGGAACAAACATGTACTCTATTACGTA | 58.478 | 33.333 | 0.00 | 0.00 | 31.92 | 3.57 |
58 | 59 | 7.380536 | TGGAACAAACATGTACTCTATTACGT | 58.619 | 34.615 | 0.00 | 0.00 | 31.92 | 3.57 |
59 | 60 | 7.821595 | TGGAACAAACATGTACTCTATTACG | 57.178 | 36.000 | 0.00 | 0.00 | 31.92 | 3.18 |
188 | 189 | 5.319931 | GTTGATGATTCAAAACTCGAGAGC | 58.680 | 41.667 | 21.68 | 0.00 | 43.29 | 4.09 |
191 | 192 | 4.436050 | CCCGTTGATGATTCAAAACTCGAG | 60.436 | 45.833 | 11.84 | 11.84 | 43.29 | 4.04 |
237 | 240 | 8.113228 | CTTGCTCAAAGTTCTTTCTTTCTTTC | 57.887 | 34.615 | 0.00 | 0.00 | 35.77 | 2.62 |
252 | 255 | 1.151668 | CGGTCCTGACTTGCTCAAAG | 58.848 | 55.000 | 0.00 | 0.00 | 42.07 | 2.77 |
253 | 256 | 0.250295 | CCGGTCCTGACTTGCTCAAA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
254 | 257 | 1.371183 | CCGGTCCTGACTTGCTCAA | 59.629 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
313 | 316 | 1.662044 | GCCACAAAGTTGAGGGCTG | 59.338 | 57.895 | 18.02 | 0.00 | 43.56 | 4.85 |
314 | 317 | 4.181051 | GCCACAAAGTTGAGGGCT | 57.819 | 55.556 | 18.02 | 0.00 | 43.56 | 5.19 |
317 | 320 | 0.468029 | AGGTGGCCACAAAGTTGAGG | 60.468 | 55.000 | 35.78 | 3.39 | 41.19 | 3.86 |
325 | 328 | 2.203337 | GCAGTGAGGTGGCCACAA | 60.203 | 61.111 | 35.78 | 18.86 | 37.01 | 3.33 |
416 | 1259 | 7.125204 | ACCAGCAGTTGACTATACTATTAACCA | 59.875 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
417 | 1260 | 7.498443 | ACCAGCAGTTGACTATACTATTAACC | 58.502 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
419 | 1262 | 8.534954 | AGACCAGCAGTTGACTATACTATTAA | 57.465 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
421 | 1264 | 7.268586 | CAAGACCAGCAGTTGACTATACTATT | 58.731 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
422 | 1265 | 6.684111 | GCAAGACCAGCAGTTGACTATACTAT | 60.684 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
424 | 1267 | 4.621747 | GCAAGACCAGCAGTTGACTATACT | 60.622 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
425 | 1268 | 3.619038 | GCAAGACCAGCAGTTGACTATAC | 59.381 | 47.826 | 0.00 | 0.00 | 0.00 | 1.47 |
426 | 1269 | 3.369471 | GGCAAGACCAGCAGTTGACTATA | 60.369 | 47.826 | 0.00 | 0.00 | 38.86 | 1.31 |
427 | 1270 | 2.616510 | GGCAAGACCAGCAGTTGACTAT | 60.617 | 50.000 | 0.00 | 0.00 | 38.86 | 2.12 |
428 | 1271 | 1.270839 | GGCAAGACCAGCAGTTGACTA | 60.271 | 52.381 | 0.00 | 0.00 | 38.86 | 2.59 |
429 | 1272 | 0.536006 | GGCAAGACCAGCAGTTGACT | 60.536 | 55.000 | 0.00 | 0.00 | 38.86 | 3.41 |
430 | 1273 | 0.819259 | TGGCAAGACCAGCAGTTGAC | 60.819 | 55.000 | 0.00 | 0.00 | 46.36 | 3.18 |
431 | 1274 | 1.531259 | TGGCAAGACCAGCAGTTGA | 59.469 | 52.632 | 0.00 | 0.00 | 46.36 | 3.18 |
432 | 1275 | 4.162592 | TGGCAAGACCAGCAGTTG | 57.837 | 55.556 | 0.00 | 0.00 | 46.36 | 3.16 |
441 | 1284 | 2.675348 | GCTACAGATGACTTGGCAAGAC | 59.325 | 50.000 | 32.50 | 26.11 | 0.00 | 3.01 |
442 | 1285 | 2.355108 | GGCTACAGATGACTTGGCAAGA | 60.355 | 50.000 | 32.50 | 12.70 | 0.00 | 3.02 |
444 | 1287 | 1.350684 | TGGCTACAGATGACTTGGCAA | 59.649 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
445 | 1288 | 0.983467 | TGGCTACAGATGACTTGGCA | 59.017 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
446 | 1289 | 2.113860 | TTGGCTACAGATGACTTGGC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
447 | 1290 | 5.649782 | AAATTTGGCTACAGATGACTTGG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 3.61 |
449 | 1292 | 7.229506 | GGCTATAAATTTGGCTACAGATGACTT | 59.770 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
451 | 1294 | 6.347725 | CGGCTATAAATTTGGCTACAGATGAC | 60.348 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
453 | 1296 | 5.700832 | TCGGCTATAAATTTGGCTACAGATG | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
454 | 1297 | 5.701290 | GTCGGCTATAAATTTGGCTACAGAT | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
456 | 1299 | 4.814234 | TGTCGGCTATAAATTTGGCTACAG | 59.186 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
457 | 1300 | 4.771903 | TGTCGGCTATAAATTTGGCTACA | 58.228 | 39.130 | 0.00 | 2.66 | 0.00 | 2.74 |
458 | 1301 | 5.296035 | ACTTGTCGGCTATAAATTTGGCTAC | 59.704 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
459 | 1302 | 5.433526 | ACTTGTCGGCTATAAATTTGGCTA | 58.566 | 37.500 | 0.00 | 0.00 | 0.00 | 3.93 |
461 | 1304 | 4.632538 | ACTTGTCGGCTATAAATTTGGC | 57.367 | 40.909 | 0.00 | 2.75 | 0.00 | 4.52 |
463 | 1306 | 9.864034 | CTATTGTACTTGTCGGCTATAAATTTG | 57.136 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
465 | 1308 | 9.609346 | AACTATTGTACTTGTCGGCTATAAATT | 57.391 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
468 | 1311 | 8.685427 | TGTAACTATTGTACTTGTCGGCTATAA | 58.315 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
469 | 1312 | 8.224389 | TGTAACTATTGTACTTGTCGGCTATA | 57.776 | 34.615 | 0.00 | 0.00 | 0.00 | 1.31 |
470 | 1313 | 7.104043 | TGTAACTATTGTACTTGTCGGCTAT | 57.896 | 36.000 | 0.00 | 0.00 | 0.00 | 2.97 |
471 | 1314 | 6.513806 | TGTAACTATTGTACTTGTCGGCTA | 57.486 | 37.500 | 0.00 | 0.00 | 0.00 | 3.93 |
472 | 1315 | 5.395682 | TGTAACTATTGTACTTGTCGGCT | 57.604 | 39.130 | 0.00 | 0.00 | 0.00 | 5.52 |
474 | 1317 | 8.692110 | TTACATGTAACTATTGTACTTGTCGG | 57.308 | 34.615 | 14.35 | 0.00 | 35.01 | 4.79 |
480 | 1323 | 9.443323 | TGCACATTTACATGTAACTATTGTACT | 57.557 | 29.630 | 17.85 | 0.00 | 42.14 | 2.73 |
485 | 1328 | 7.121168 | AGCAGTGCACATTTACATGTAACTATT | 59.879 | 33.333 | 21.04 | 1.16 | 42.14 | 1.73 |
486 | 1329 | 6.599244 | AGCAGTGCACATTTACATGTAACTAT | 59.401 | 34.615 | 21.04 | 7.34 | 42.14 | 2.12 |
487 | 1330 | 5.937540 | AGCAGTGCACATTTACATGTAACTA | 59.062 | 36.000 | 21.04 | 5.13 | 42.14 | 2.24 |
488 | 1331 | 4.761739 | AGCAGTGCACATTTACATGTAACT | 59.238 | 37.500 | 21.04 | 10.16 | 42.14 | 2.24 |
489 | 1332 | 5.046910 | AGCAGTGCACATTTACATGTAAC | 57.953 | 39.130 | 21.04 | 6.97 | 42.14 | 2.50 |
490 | 1333 | 5.703978 | AAGCAGTGCACATTTACATGTAA | 57.296 | 34.783 | 21.04 | 14.35 | 42.14 | 2.41 |
491 | 1334 | 5.703978 | AAAGCAGTGCACATTTACATGTA | 57.296 | 34.783 | 21.04 | 0.08 | 42.14 | 2.29 |
492 | 1335 | 4.589216 | AAAGCAGTGCACATTTACATGT | 57.411 | 36.364 | 21.04 | 2.69 | 45.18 | 3.21 |
493 | 1336 | 5.910637 | AAAAAGCAGTGCACATTTACATG | 57.089 | 34.783 | 21.04 | 7.65 | 36.34 | 3.21 |
514 | 1357 | 9.806448 | TTTGGCTATAGATTTGGCTATATCAAA | 57.194 | 29.630 | 3.21 | 0.78 | 36.07 | 2.69 |
515 | 1358 | 9.979897 | ATTTGGCTATAGATTTGGCTATATCAA | 57.020 | 29.630 | 3.21 | 0.00 | 33.98 | 2.57 |
516 | 1359 | 9.618890 | GATTTGGCTATAGATTTGGCTATATCA | 57.381 | 33.333 | 3.21 | 0.00 | 33.98 | 2.15 |
517 | 1360 | 9.618890 | TGATTTGGCTATAGATTTGGCTATATC | 57.381 | 33.333 | 3.21 | 0.00 | 33.98 | 1.63 |
519 | 1362 | 9.618890 | GATGATTTGGCTATAGATTTGGCTATA | 57.381 | 33.333 | 3.21 | 0.00 | 33.37 | 1.31 |
520 | 1363 | 7.281774 | CGATGATTTGGCTATAGATTTGGCTAT | 59.718 | 37.037 | 3.21 | 0.00 | 35.39 | 2.97 |
521 | 1364 | 6.595326 | CGATGATTTGGCTATAGATTTGGCTA | 59.405 | 38.462 | 3.21 | 0.00 | 0.00 | 3.93 |
523 | 1366 | 5.392380 | CCGATGATTTGGCTATAGATTTGGC | 60.392 | 44.000 | 3.21 | 0.00 | 0.00 | 4.52 |
524 | 1367 | 5.707298 | ACCGATGATTTGGCTATAGATTTGG | 59.293 | 40.000 | 3.21 | 0.00 | 0.00 | 3.28 |
525 | 1368 | 6.205464 | ACACCGATGATTTGGCTATAGATTTG | 59.795 | 38.462 | 3.21 | 0.00 | 0.00 | 2.32 |
526 | 1369 | 6.299141 | ACACCGATGATTTGGCTATAGATTT | 58.701 | 36.000 | 3.21 | 0.00 | 0.00 | 2.17 |
528 | 1371 | 5.489792 | ACACCGATGATTTGGCTATAGAT | 57.510 | 39.130 | 3.21 | 0.00 | 0.00 | 1.98 |
529 | 1372 | 4.955811 | ACACCGATGATTTGGCTATAGA | 57.044 | 40.909 | 3.21 | 0.00 | 0.00 | 1.98 |
530 | 1373 | 5.784177 | ACTACACCGATGATTTGGCTATAG | 58.216 | 41.667 | 0.00 | 0.00 | 0.00 | 1.31 |
531 | 1374 | 5.801531 | ACTACACCGATGATTTGGCTATA | 57.198 | 39.130 | 0.00 | 0.00 | 0.00 | 1.31 |
532 | 1375 | 4.689612 | ACTACACCGATGATTTGGCTAT | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 2.97 |
533 | 1376 | 5.801531 | ATACTACACCGATGATTTGGCTA | 57.198 | 39.130 | 0.00 | 0.00 | 0.00 | 3.93 |
534 | 1377 | 4.689612 | ATACTACACCGATGATTTGGCT | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 4.75 |
535 | 1378 | 5.057149 | AGAATACTACACCGATGATTTGGC | 58.943 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
537 | 1380 | 5.107837 | GCGAGAATACTACACCGATGATTTG | 60.108 | 44.000 | 0.00 | 0.00 | 0.00 | 2.32 |
539 | 1461 | 4.037565 | TGCGAGAATACTACACCGATGATT | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
543 | 1465 | 3.630769 | TCTTGCGAGAATACTACACCGAT | 59.369 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
546 | 1468 | 6.476243 | TTTTTCTTGCGAGAATACTACACC | 57.524 | 37.500 | 17.22 | 0.00 | 41.35 | 4.16 |
570 | 1492 | 3.473625 | CTGGACTAACCCGTGAAGTTTT | 58.526 | 45.455 | 0.00 | 0.00 | 38.00 | 2.43 |
571 | 1493 | 2.224450 | CCTGGACTAACCCGTGAAGTTT | 60.224 | 50.000 | 0.00 | 0.00 | 38.00 | 2.66 |
607 | 1587 | 4.514577 | CTACCCCGTGCCTCTGCG | 62.515 | 72.222 | 0.00 | 0.00 | 41.78 | 5.18 |
610 | 1590 | 1.120530 | CAATACTACCCCGTGCCTCT | 58.879 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
611 | 1591 | 0.828677 | ACAATACTACCCCGTGCCTC | 59.171 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
612 | 1592 | 0.828677 | GACAATACTACCCCGTGCCT | 59.171 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
613 | 1593 | 0.529119 | CGACAATACTACCCCGTGCC | 60.529 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
614 | 1594 | 1.149964 | GCGACAATACTACCCCGTGC | 61.150 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
615 | 1595 | 0.173935 | TGCGACAATACTACCCCGTG | 59.826 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
616 | 1596 | 0.458669 | CTGCGACAATACTACCCCGT | 59.541 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
617 | 1597 | 0.742505 | TCTGCGACAATACTACCCCG | 59.257 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
619 | 1599 | 1.538419 | GGCTCTGCGACAATACTACCC | 60.538 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
622 | 1602 | 2.099263 | GTCTGGCTCTGCGACAATACTA | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
623 | 1603 | 1.134965 | GTCTGGCTCTGCGACAATACT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
624 | 1604 | 1.281899 | GTCTGGCTCTGCGACAATAC | 58.718 | 55.000 | 0.00 | 0.00 | 0.00 | 1.89 |
625 | 1605 | 0.175760 | GGTCTGGCTCTGCGACAATA | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
626 | 1606 | 1.078848 | GGTCTGGCTCTGCGACAAT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 2.71 |
627 | 1607 | 2.343758 | GGTCTGGCTCTGCGACAA | 59.656 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
628 | 1608 | 4.056125 | CGGTCTGGCTCTGCGACA | 62.056 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
665 | 1676 | 0.230260 | CGTACACGTGGTTTTGGACG | 59.770 | 55.000 | 21.57 | 12.71 | 43.29 | 4.79 |
752 | 1769 | 6.128688 | CGTCTGGATGTCTTTCTTTCTTCTTC | 60.129 | 42.308 | 0.00 | 0.00 | 0.00 | 2.87 |
753 | 1770 | 5.698545 | CGTCTGGATGTCTTTCTTTCTTCTT | 59.301 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
755 | 1772 | 4.390297 | CCGTCTGGATGTCTTTCTTTCTTC | 59.610 | 45.833 | 0.00 | 0.00 | 37.49 | 2.87 |
756 | 1773 | 4.040461 | TCCGTCTGGATGTCTTTCTTTCTT | 59.960 | 41.667 | 0.00 | 0.00 | 40.17 | 2.52 |
757 | 1774 | 3.578716 | TCCGTCTGGATGTCTTTCTTTCT | 59.421 | 43.478 | 0.00 | 0.00 | 40.17 | 2.52 |
758 | 1775 | 3.926616 | TCCGTCTGGATGTCTTTCTTTC | 58.073 | 45.455 | 0.00 | 0.00 | 40.17 | 2.62 |
759 | 1776 | 4.065789 | GTTCCGTCTGGATGTCTTTCTTT | 58.934 | 43.478 | 0.00 | 0.00 | 45.91 | 2.52 |
760 | 1777 | 3.665190 | GTTCCGTCTGGATGTCTTTCTT | 58.335 | 45.455 | 0.00 | 0.00 | 45.91 | 2.52 |
761 | 1778 | 2.352814 | CGTTCCGTCTGGATGTCTTTCT | 60.353 | 50.000 | 0.00 | 0.00 | 45.91 | 2.52 |
826 | 1869 | 1.170442 | CGCCCGTGGAAAAGGTAAAT | 58.830 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1220 | 2282 | 2.202676 | CCTGCGAGAAGACGAGCC | 60.203 | 66.667 | 0.00 | 0.00 | 35.09 | 4.70 |
1254 | 2316 | 3.121030 | CCAACGCCGCAGAGGAAG | 61.121 | 66.667 | 0.00 | 0.00 | 45.00 | 3.46 |
1560 | 5123 | 2.752640 | TGCACGGCGCTACCTCTA | 60.753 | 61.111 | 6.90 | 0.00 | 43.06 | 2.43 |
1561 | 5124 | 4.135153 | CTGCACGGCGCTACCTCT | 62.135 | 66.667 | 6.90 | 0.00 | 43.06 | 3.69 |
1881 | 5494 | 0.748005 | AGCACTGCACGGTGAAGTTT | 60.748 | 50.000 | 19.22 | 8.02 | 39.34 | 2.66 |
2112 | 5725 | 2.022129 | CGTCGTTGGTGACTGAGGC | 61.022 | 63.158 | 0.00 | 0.00 | 36.71 | 4.70 |
2712 | 7089 | 1.226717 | GTTCTCCTCGCAGTAGCCG | 60.227 | 63.158 | 0.00 | 0.00 | 37.52 | 5.52 |
3043 | 7441 | 3.357079 | GGACAGGTGCTGCGGTTG | 61.357 | 66.667 | 0.00 | 0.00 | 34.37 | 3.77 |
3044 | 7442 | 3.196207 | ATGGACAGGTGCTGCGGTT | 62.196 | 57.895 | 0.00 | 0.00 | 34.37 | 4.44 |
3045 | 7443 | 3.640407 | ATGGACAGGTGCTGCGGT | 61.640 | 61.111 | 0.00 | 0.00 | 34.37 | 5.68 |
3216 | 7617 | 1.080025 | GTAGTCCACCACGCTCACC | 60.080 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
3321 | 7722 | 2.434359 | GTGTACGCCACCAGCTCC | 60.434 | 66.667 | 0.00 | 0.00 | 40.39 | 4.70 |
3534 | 7939 | 3.471244 | CTACTCCGCGAGCCTTCCG | 62.471 | 68.421 | 8.23 | 0.00 | 32.04 | 4.30 |
3554 | 7959 | 3.138304 | TGAAACTCCTGGAACGAATGTG | 58.862 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
3556 | 7961 | 4.829064 | TTTGAAACTCCTGGAACGAATG | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 2.67 |
3559 | 7964 | 4.036262 | CACAATTTGAAACTCCTGGAACGA | 59.964 | 41.667 | 2.79 | 0.00 | 0.00 | 3.85 |
3622 | 8043 | 8.742554 | AAAATCAATGAACTAACAAACGGATC | 57.257 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
3692 | 8113 | 5.981915 | AGATAATCACATCACAGATCACACG | 59.018 | 40.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3722 | 8143 | 3.243068 | ACCAAGAACAAAATGCGTGAGAC | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
3729 | 8150 | 3.993920 | ACATCCACCAAGAACAAAATGC | 58.006 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
3779 | 8239 | 1.392853 | CGCAGAGAGCATTGTTGAGAC | 59.607 | 52.381 | 0.00 | 0.00 | 46.13 | 3.36 |
3795 | 8255 | 2.174349 | GCAAAGGCTCGAACGCAG | 59.826 | 61.111 | 0.00 | 0.00 | 36.96 | 5.18 |
3812 | 8272 | 0.820482 | TCATGCTGGGAATGATGCCG | 60.820 | 55.000 | 0.00 | 0.00 | 40.61 | 5.69 |
3826 | 8286 | 5.123979 | GGGTAATCGGGAGAAATTATCATGC | 59.876 | 44.000 | 0.00 | 0.00 | 45.37 | 4.06 |
3827 | 8287 | 6.476378 | AGGGTAATCGGGAGAAATTATCATG | 58.524 | 40.000 | 0.00 | 0.00 | 45.37 | 3.07 |
3828 | 8288 | 6.704056 | AGGGTAATCGGGAGAAATTATCAT | 57.296 | 37.500 | 0.00 | 0.00 | 45.37 | 2.45 |
3829 | 8289 | 6.294899 | CGTAGGGTAATCGGGAGAAATTATCA | 60.295 | 42.308 | 0.00 | 0.00 | 45.37 | 2.15 |
3830 | 8290 | 6.071728 | TCGTAGGGTAATCGGGAGAAATTATC | 60.072 | 42.308 | 0.00 | 0.00 | 45.37 | 1.75 |
3831 | 8291 | 5.776716 | TCGTAGGGTAATCGGGAGAAATTAT | 59.223 | 40.000 | 0.00 | 0.00 | 45.37 | 1.28 |
3832 | 8292 | 5.139727 | TCGTAGGGTAATCGGGAGAAATTA | 58.860 | 41.667 | 0.00 | 0.00 | 45.37 | 1.40 |
3833 | 8293 | 3.962718 | TCGTAGGGTAATCGGGAGAAATT | 59.037 | 43.478 | 0.00 | 0.00 | 45.37 | 1.82 |
3834 | 8294 | 3.569491 | TCGTAGGGTAATCGGGAGAAAT | 58.431 | 45.455 | 0.00 | 0.00 | 45.37 | 2.17 |
3835 | 8295 | 3.017048 | TCGTAGGGTAATCGGGAGAAA | 57.983 | 47.619 | 0.00 | 0.00 | 45.37 | 2.52 |
3836 | 8296 | 2.734755 | TCGTAGGGTAATCGGGAGAA | 57.265 | 50.000 | 0.00 | 0.00 | 45.37 | 2.87 |
3837 | 8297 | 2.734755 | TTCGTAGGGTAATCGGGAGA | 57.265 | 50.000 | 0.00 | 0.00 | 46.90 | 3.71 |
3838 | 8298 | 2.889045 | TGATTCGTAGGGTAATCGGGAG | 59.111 | 50.000 | 0.00 | 0.00 | 35.32 | 4.30 |
3839 | 8299 | 2.948115 | TGATTCGTAGGGTAATCGGGA | 58.052 | 47.619 | 0.00 | 0.00 | 35.32 | 5.14 |
3840 | 8300 | 3.955650 | ATGATTCGTAGGGTAATCGGG | 57.044 | 47.619 | 0.00 | 0.00 | 35.32 | 5.14 |
3841 | 8301 | 3.432252 | GCAATGATTCGTAGGGTAATCGG | 59.568 | 47.826 | 0.00 | 0.00 | 35.32 | 4.18 |
3842 | 8302 | 3.121279 | CGCAATGATTCGTAGGGTAATCG | 59.879 | 47.826 | 0.00 | 0.00 | 35.32 | 3.34 |
3843 | 8303 | 4.056050 | ACGCAATGATTCGTAGGGTAATC | 58.944 | 43.478 | 1.85 | 0.00 | 37.14 | 1.75 |
3844 | 8304 | 4.067972 | ACGCAATGATTCGTAGGGTAAT | 57.932 | 40.909 | 1.85 | 0.00 | 37.14 | 1.89 |
3845 | 8305 | 3.530265 | ACGCAATGATTCGTAGGGTAA | 57.470 | 42.857 | 1.85 | 0.00 | 37.14 | 2.85 |
3846 | 8306 | 3.450578 | GAACGCAATGATTCGTAGGGTA | 58.549 | 45.455 | 3.80 | 0.00 | 38.03 | 3.69 |
3847 | 8307 | 2.277084 | GAACGCAATGATTCGTAGGGT | 58.723 | 47.619 | 3.80 | 0.00 | 38.03 | 4.34 |
3848 | 8308 | 1.597663 | GGAACGCAATGATTCGTAGGG | 59.402 | 52.381 | 3.80 | 0.00 | 38.03 | 3.53 |
3849 | 8309 | 2.276201 | TGGAACGCAATGATTCGTAGG | 58.724 | 47.619 | 3.80 | 0.00 | 38.03 | 3.18 |
3850 | 8310 | 3.785505 | GCTTGGAACGCAATGATTCGTAG | 60.786 | 47.826 | 3.80 | 0.57 | 38.03 | 3.51 |
3851 | 8311 | 2.095213 | GCTTGGAACGCAATGATTCGTA | 59.905 | 45.455 | 3.80 | 0.00 | 38.03 | 3.43 |
3871 | 8346 | 1.273327 | CTGGAATCCCACAAAAGTGGC | 59.727 | 52.381 | 9.10 | 0.00 | 42.94 | 5.01 |
3877 | 8353 | 2.673775 | TTCTGCTGGAATCCCACAAA | 57.326 | 45.000 | 0.00 | 0.00 | 37.58 | 2.83 |
3919 | 8395 | 1.204786 | TTCCCTCCTGAATGGCCGAA | 61.205 | 55.000 | 0.00 | 0.00 | 35.26 | 4.30 |
3920 | 8396 | 1.615124 | TTCCCTCCTGAATGGCCGA | 60.615 | 57.895 | 0.00 | 0.00 | 35.26 | 5.54 |
3924 | 8400 | 3.939740 | TGATTCTTCCCTCCTGAATGG | 57.060 | 47.619 | 0.00 | 0.00 | 31.49 | 3.16 |
3934 | 8410 | 5.545588 | TGATGATCGAGATTGATTCTTCCC | 58.454 | 41.667 | 0.00 | 0.00 | 33.74 | 3.97 |
3999 | 8475 | 4.514577 | AGAACGGCGCGGGAGATG | 62.515 | 66.667 | 19.75 | 0.00 | 0.00 | 2.90 |
4000 | 8476 | 4.208686 | GAGAACGGCGCGGGAGAT | 62.209 | 66.667 | 19.75 | 2.31 | 0.00 | 2.75 |
4009 | 8485 | 0.036858 | AGCCAAGAAGAGAGAACGGC | 60.037 | 55.000 | 0.00 | 0.00 | 38.36 | 5.68 |
4015 | 8491 | 0.610687 | ACCGGAAGCCAAGAAGAGAG | 59.389 | 55.000 | 9.46 | 0.00 | 0.00 | 3.20 |
4046 | 8525 | 0.249953 | TTTGACCGCTCCACGCTTTA | 60.250 | 50.000 | 0.00 | 0.00 | 41.76 | 1.85 |
4051 | 8530 | 1.156736 | AGAAATTTGACCGCTCCACG | 58.843 | 50.000 | 0.00 | 0.00 | 43.15 | 4.94 |
4080 | 8559 | 0.386731 | CGATGCGTTTGGGTTGGAAC | 60.387 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
4081 | 8560 | 1.953017 | CGATGCGTTTGGGTTGGAA | 59.047 | 52.632 | 0.00 | 0.00 | 0.00 | 3.53 |
4082 | 8561 | 2.622011 | GCGATGCGTTTGGGTTGGA | 61.622 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
4083 | 8562 | 2.126502 | GCGATGCGTTTGGGTTGG | 60.127 | 61.111 | 0.00 | 0.00 | 0.00 | 3.77 |
4084 | 8563 | 1.442520 | CAGCGATGCGTTTGGGTTG | 60.443 | 57.895 | 0.00 | 0.00 | 0.00 | 3.77 |
4088 | 8572 | 4.481112 | GCCCAGCGATGCGTTTGG | 62.481 | 66.667 | 0.00 | 0.00 | 35.00 | 3.28 |
4128 | 8612 | 1.070786 | GAACCACTTCCCAGCGACA | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
4129 | 8613 | 1.671379 | GGAACCACTTCCCAGCGAC | 60.671 | 63.158 | 0.00 | 0.00 | 40.38 | 5.19 |
4130 | 8614 | 2.747686 | GGAACCACTTCCCAGCGA | 59.252 | 61.111 | 0.00 | 0.00 | 40.38 | 4.93 |
4131 | 8615 | 2.742372 | CGGAACCACTTCCCAGCG | 60.742 | 66.667 | 0.00 | 0.00 | 43.04 | 5.18 |
4132 | 8616 | 2.359975 | CCGGAACCACTTCCCAGC | 60.360 | 66.667 | 0.00 | 0.00 | 43.04 | 4.85 |
4133 | 8617 | 2.351276 | CCCGGAACCACTTCCCAG | 59.649 | 66.667 | 0.73 | 0.00 | 43.04 | 4.45 |
4134 | 8618 | 3.961414 | GCCCGGAACCACTTCCCA | 61.961 | 66.667 | 0.73 | 0.00 | 43.04 | 4.37 |
4135 | 8619 | 3.647771 | AGCCCGGAACCACTTCCC | 61.648 | 66.667 | 0.73 | 0.00 | 43.04 | 3.97 |
4172 | 8656 | 0.953471 | CCCAAAATCACACCGAGCGA | 60.953 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
4173 | 8657 | 1.234615 | ACCCAAAATCACACCGAGCG | 61.235 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4174 | 8658 | 0.521735 | GACCCAAAATCACACCGAGC | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
4175 | 8659 | 1.806542 | CAGACCCAAAATCACACCGAG | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
4176 | 8660 | 1.890876 | CAGACCCAAAATCACACCGA | 58.109 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
4177 | 8661 | 0.240945 | GCAGACCCAAAATCACACCG | 59.759 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
4216 | 8700 | 3.116531 | CCCGGAGAAAACGACCGC | 61.117 | 66.667 | 0.73 | 0.00 | 44.45 | 5.68 |
4238 | 8722 | 3.864686 | CGGCCAAAGATGACGCGG | 61.865 | 66.667 | 12.47 | 0.00 | 0.00 | 6.46 |
4247 | 8731 | 2.818274 | GACTACCGGCGGCCAAAG | 60.818 | 66.667 | 28.71 | 20.06 | 0.00 | 2.77 |
4290 | 8792 | 3.445096 | CCTGACCAATCCTTTTGTCATCC | 59.555 | 47.826 | 0.00 | 0.00 | 37.02 | 3.51 |
4291 | 8793 | 4.156739 | GTCCTGACCAATCCTTTTGTCATC | 59.843 | 45.833 | 0.00 | 0.00 | 37.02 | 2.92 |
4323 | 8825 | 0.724453 | CGTTGAAATTGACACCGGCG | 60.724 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
4328 | 8830 | 2.159627 | AGATCGGCGTTGAAATTGACAC | 59.840 | 45.455 | 6.85 | 0.00 | 0.00 | 3.67 |
4330 | 8832 | 2.673368 | AGAGATCGGCGTTGAAATTGAC | 59.327 | 45.455 | 6.85 | 0.00 | 0.00 | 3.18 |
4410 | 8912 | 2.555325 | CCTTCGGGTGGGAACTAAAAAC | 59.445 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4425 | 8927 | 3.290948 | TCATAAATCAACCCCCTTCGG | 57.709 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
4434 | 8936 | 3.365832 | CGCAGCCACATCATAAATCAAC | 58.634 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
4467 | 8969 | 0.237498 | CTTTTTGAGTTCGCCGGACC | 59.763 | 55.000 | 5.05 | 0.00 | 0.00 | 4.46 |
4475 | 8977 | 7.985634 | TTTGAGCATTGTACTTTTTGAGTTC | 57.014 | 32.000 | 0.00 | 0.00 | 39.86 | 3.01 |
4484 | 8986 | 6.312399 | TGATTCGTTTTGAGCATTGTACTT | 57.688 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4491 | 8993 | 4.481930 | TTCGTTGATTCGTTTTGAGCAT | 57.518 | 36.364 | 0.00 | 0.00 | 0.00 | 3.79 |
4494 | 8996 | 7.375808 | TCATCTTTTTCGTTGATTCGTTTTGAG | 59.624 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
4495 | 8997 | 7.190191 | TCATCTTTTTCGTTGATTCGTTTTGA | 58.810 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
4502 | 9004 | 7.221452 | CCATTCCATCATCTTTTTCGTTGATTC | 59.779 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
4503 | 9005 | 7.037438 | CCATTCCATCATCTTTTTCGTTGATT | 58.963 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4506 | 9008 | 5.953183 | TCCATTCCATCATCTTTTTCGTTG | 58.047 | 37.500 | 0.00 | 0.00 | 0.00 | 4.10 |
4508 | 9010 | 6.588719 | TTTCCATTCCATCATCTTTTTCGT | 57.411 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.