Multiple sequence alignment - TraesCS1A01G070500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G070500 | chr1A | 100.000 | 3946 | 0 | 0 | 1 | 3946 | 53435322 | 53439267 | 0.000000e+00 | 7287.0 |
1 | TraesCS1A01G070500 | chr1D | 93.123 | 1207 | 71 | 5 | 2748 | 3946 | 53870373 | 53871575 | 0.000000e+00 | 1759.0 |
2 | TraesCS1A01G070500 | chr1D | 96.338 | 1065 | 32 | 4 | 912 | 1969 | 53868372 | 53869436 | 0.000000e+00 | 1744.0 |
3 | TraesCS1A01G070500 | chr1D | 93.395 | 651 | 30 | 11 | 1974 | 2622 | 53869706 | 53870345 | 0.000000e+00 | 952.0 |
4 | TraesCS1A01G070500 | chr1D | 95.390 | 564 | 26 | 0 | 218 | 781 | 418519739 | 418520302 | 0.000000e+00 | 898.0 |
5 | TraesCS1A01G070500 | chr1B | 96.223 | 1059 | 36 | 4 | 912 | 1969 | 87970226 | 87971281 | 0.000000e+00 | 1731.0 |
6 | TraesCS1A01G070500 | chr1B | 95.390 | 564 | 26 | 0 | 218 | 781 | 57805585 | 57805022 | 0.000000e+00 | 898.0 |
7 | TraesCS1A01G070500 | chr1B | 91.975 | 648 | 36 | 8 | 1972 | 2609 | 87971563 | 87972204 | 0.000000e+00 | 894.0 |
8 | TraesCS1A01G070500 | chr1B | 95.044 | 565 | 28 | 0 | 218 | 782 | 30713859 | 30713295 | 0.000000e+00 | 889.0 |
9 | TraesCS1A01G070500 | chr1B | 86.160 | 737 | 45 | 23 | 2740 | 3454 | 87972240 | 87972941 | 0.000000e+00 | 743.0 |
10 | TraesCS1A01G070500 | chr1B | 86.068 | 323 | 44 | 1 | 3451 | 3772 | 87973161 | 87973483 | 2.920000e-91 | 346.0 |
11 | TraesCS1A01G070500 | chr4A | 97.509 | 562 | 14 | 0 | 218 | 779 | 94978856 | 94978295 | 0.000000e+00 | 961.0 |
12 | TraesCS1A01G070500 | chr4A | 96.751 | 554 | 18 | 0 | 226 | 779 | 601217463 | 601218016 | 0.000000e+00 | 924.0 |
13 | TraesCS1A01G070500 | chr4A | 95.213 | 564 | 27 | 0 | 218 | 781 | 661815785 | 661815222 | 0.000000e+00 | 893.0 |
14 | TraesCS1A01G070500 | chr4A | 95.221 | 565 | 24 | 3 | 218 | 781 | 733340318 | 733340880 | 0.000000e+00 | 891.0 |
15 | TraesCS1A01G070500 | chr4A | 84.733 | 131 | 18 | 2 | 1 | 130 | 625861103 | 625860974 | 3.200000e-26 | 130.0 |
16 | TraesCS1A01G070500 | chr4A | 83.721 | 129 | 20 | 1 | 5 | 132 | 7738188 | 7738316 | 1.930000e-23 | 121.0 |
17 | TraesCS1A01G070500 | chr7D | 95.221 | 565 | 26 | 1 | 218 | 782 | 65716260 | 65716823 | 0.000000e+00 | 893.0 |
18 | TraesCS1A01G070500 | chr2B | 95.204 | 563 | 26 | 1 | 218 | 780 | 95792899 | 95792338 | 0.000000e+00 | 889.0 |
19 | TraesCS1A01G070500 | chr2B | 87.387 | 111 | 14 | 0 | 22 | 132 | 472909730 | 472909620 | 1.150000e-25 | 128.0 |
20 | TraesCS1A01G070500 | chr2B | 84.496 | 129 | 18 | 2 | 4 | 132 | 560893510 | 560893384 | 4.140000e-25 | 126.0 |
21 | TraesCS1A01G070500 | chr3A | 89.091 | 110 | 12 | 0 | 1 | 110 | 641865652 | 641865761 | 1.910000e-28 | 137.0 |
22 | TraesCS1A01G070500 | chr3A | 85.938 | 128 | 17 | 1 | 6 | 133 | 625536874 | 625536748 | 6.880000e-28 | 135.0 |
23 | TraesCS1A01G070500 | chr2D | 85.124 | 121 | 14 | 3 | 22 | 140 | 340269467 | 340269585 | 1.930000e-23 | 121.0 |
24 | TraesCS1A01G070500 | chr2D | 97.619 | 42 | 1 | 0 | 182 | 223 | 484491004 | 484490963 | 5.470000e-09 | 73.1 |
25 | TraesCS1A01G070500 | chr6D | 83.594 | 128 | 20 | 1 | 5 | 132 | 454249128 | 454249002 | 6.930000e-23 | 119.0 |
26 | TraesCS1A01G070500 | chr5D | 84.553 | 123 | 16 | 2 | 1 | 120 | 35289973 | 35290095 | 6.930000e-23 | 119.0 |
27 | TraesCS1A01G070500 | chr3B | 100.000 | 42 | 0 | 0 | 182 | 223 | 21383388 | 21383429 | 1.180000e-10 | 78.7 |
28 | TraesCS1A01G070500 | chr7A | 97.619 | 42 | 1 | 0 | 183 | 224 | 734078357 | 734078316 | 5.470000e-09 | 73.1 |
29 | TraesCS1A01G070500 | chr4D | 97.619 | 42 | 1 | 0 | 182 | 223 | 487283578 | 487283537 | 5.470000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G070500 | chr1A | 53435322 | 53439267 | 3945 | False | 7287.0 | 7287 | 100.000000 | 1 | 3946 | 1 | chr1A.!!$F1 | 3945 |
1 | TraesCS1A01G070500 | chr1D | 53868372 | 53871575 | 3203 | False | 1485.0 | 1759 | 94.285333 | 912 | 3946 | 3 | chr1D.!!$F2 | 3034 |
2 | TraesCS1A01G070500 | chr1D | 418519739 | 418520302 | 563 | False | 898.0 | 898 | 95.390000 | 218 | 781 | 1 | chr1D.!!$F1 | 563 |
3 | TraesCS1A01G070500 | chr1B | 87970226 | 87973483 | 3257 | False | 928.5 | 1731 | 90.106500 | 912 | 3772 | 4 | chr1B.!!$F1 | 2860 |
4 | TraesCS1A01G070500 | chr1B | 57805022 | 57805585 | 563 | True | 898.0 | 898 | 95.390000 | 218 | 781 | 1 | chr1B.!!$R2 | 563 |
5 | TraesCS1A01G070500 | chr1B | 30713295 | 30713859 | 564 | True | 889.0 | 889 | 95.044000 | 218 | 782 | 1 | chr1B.!!$R1 | 564 |
6 | TraesCS1A01G070500 | chr4A | 94978295 | 94978856 | 561 | True | 961.0 | 961 | 97.509000 | 218 | 779 | 1 | chr4A.!!$R1 | 561 |
7 | TraesCS1A01G070500 | chr4A | 601217463 | 601218016 | 553 | False | 924.0 | 924 | 96.751000 | 226 | 779 | 1 | chr4A.!!$F2 | 553 |
8 | TraesCS1A01G070500 | chr4A | 661815222 | 661815785 | 563 | True | 893.0 | 893 | 95.213000 | 218 | 781 | 1 | chr4A.!!$R3 | 563 |
9 | TraesCS1A01G070500 | chr4A | 733340318 | 733340880 | 562 | False | 891.0 | 891 | 95.221000 | 218 | 781 | 1 | chr4A.!!$F3 | 563 |
10 | TraesCS1A01G070500 | chr7D | 65716260 | 65716823 | 563 | False | 893.0 | 893 | 95.221000 | 218 | 782 | 1 | chr7D.!!$F1 | 564 |
11 | TraesCS1A01G070500 | chr2B | 95792338 | 95792899 | 561 | True | 889.0 | 889 | 95.204000 | 218 | 780 | 1 | chr2B.!!$R1 | 562 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
887 | 889 | 0.030235 | TTGACGGCCATCGAGATACG | 59.970 | 55.0 | 2.24 | 0.0 | 42.43 | 3.06 | F |
1004 | 1006 | 0.251121 | ATGTCCAACGGCACCATGAA | 60.251 | 50.0 | 0.00 | 0.0 | 0.00 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2039 | 2336 | 0.316204 | ATGCTTTCCACAAGCTGCAC | 59.684 | 50.0 | 1.02 | 0.0 | 43.38 | 4.57 | R |
2973 | 3287 | 0.407139 | AGGAAAGCAGGTGCCTCATT | 59.593 | 50.0 | 0.00 | 0.0 | 43.38 | 2.57 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 8.673626 | AAAGATTTCAATACAAACTGCATACG | 57.326 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
27 | 28 | 6.785191 | AGATTTCAATACAAACTGCATACGG | 58.215 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
28 | 29 | 6.597672 | AGATTTCAATACAAACTGCATACGGA | 59.402 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
29 | 30 | 6.751514 | TTTCAATACAAACTGCATACGGAT | 57.248 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
30 | 31 | 5.984233 | TCAATACAAACTGCATACGGATC | 57.016 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
31 | 32 | 5.670485 | TCAATACAAACTGCATACGGATCT | 58.330 | 37.500 | 0.00 | 0.00 | 0.00 | 2.75 |
32 | 33 | 6.811954 | TCAATACAAACTGCATACGGATCTA | 58.188 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
33 | 34 | 7.441836 | TCAATACAAACTGCATACGGATCTAT | 58.558 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
34 | 35 | 8.581578 | TCAATACAAACTGCATACGGATCTATA | 58.418 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
35 | 36 | 9.371136 | CAATACAAACTGCATACGGATCTATAT | 57.629 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
38 | 39 | 8.349568 | ACAAACTGCATACGGATCTATATAGA | 57.650 | 34.615 | 14.76 | 14.76 | 36.65 | 1.98 |
39 | 40 | 8.244802 | ACAAACTGCATACGGATCTATATAGAC | 58.755 | 37.037 | 14.71 | 8.77 | 34.72 | 2.59 |
40 | 41 | 7.939784 | AACTGCATACGGATCTATATAGACA | 57.060 | 36.000 | 14.71 | 5.14 | 34.72 | 3.41 |
41 | 42 | 8.526667 | AACTGCATACGGATCTATATAGACAT | 57.473 | 34.615 | 14.71 | 0.00 | 34.72 | 3.06 |
42 | 43 | 9.628500 | AACTGCATACGGATCTATATAGACATA | 57.372 | 33.333 | 14.71 | 5.75 | 34.72 | 2.29 |
43 | 44 | 9.800572 | ACTGCATACGGATCTATATAGACATAT | 57.199 | 33.333 | 14.71 | 7.59 | 34.72 | 1.78 |
70 | 71 | 8.986477 | ATAAAATGTAGGTTCACTCATTTTGC | 57.014 | 30.769 | 18.54 | 0.00 | 41.50 | 3.68 |
71 | 72 | 6.655078 | AAATGTAGGTTCACTCATTTTGCT | 57.345 | 33.333 | 0.00 | 0.00 | 35.40 | 3.91 |
72 | 73 | 6.655078 | AATGTAGGTTCACTCATTTTGCTT | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
73 | 74 | 5.689383 | TGTAGGTTCACTCATTTTGCTTC | 57.311 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
74 | 75 | 3.904136 | AGGTTCACTCATTTTGCTTCG | 57.096 | 42.857 | 0.00 | 0.00 | 0.00 | 3.79 |
75 | 76 | 3.214328 | AGGTTCACTCATTTTGCTTCGT | 58.786 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
76 | 77 | 4.385825 | AGGTTCACTCATTTTGCTTCGTA | 58.614 | 39.130 | 0.00 | 0.00 | 0.00 | 3.43 |
77 | 78 | 5.003804 | AGGTTCACTCATTTTGCTTCGTAT | 58.996 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
78 | 79 | 6.170506 | AGGTTCACTCATTTTGCTTCGTATA | 58.829 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
79 | 80 | 6.823689 | AGGTTCACTCATTTTGCTTCGTATAT | 59.176 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
80 | 81 | 6.907212 | GGTTCACTCATTTTGCTTCGTATATG | 59.093 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
81 | 82 | 7.201609 | GGTTCACTCATTTTGCTTCGTATATGA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
82 | 83 | 8.338259 | GTTCACTCATTTTGCTTCGTATATGAT | 58.662 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
83 | 84 | 8.076714 | TCACTCATTTTGCTTCGTATATGATC | 57.923 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
84 | 85 | 7.928167 | TCACTCATTTTGCTTCGTATATGATCT | 59.072 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
85 | 86 | 8.554528 | CACTCATTTTGCTTCGTATATGATCTT | 58.445 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
86 | 87 | 9.113838 | ACTCATTTTGCTTCGTATATGATCTTT | 57.886 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
87 | 88 | 9.941664 | CTCATTTTGCTTCGTATATGATCTTTT | 57.058 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
128 | 129 | 9.807921 | AAAGACTTGTATTTAGAAATGAAGGGA | 57.192 | 29.630 | 10.77 | 0.00 | 0.00 | 4.20 |
129 | 130 | 9.454859 | AAGACTTGTATTTAGAAATGAAGGGAG | 57.545 | 33.333 | 10.77 | 0.00 | 0.00 | 4.30 |
130 | 131 | 8.606830 | AGACTTGTATTTAGAAATGAAGGGAGT | 58.393 | 33.333 | 10.77 | 0.00 | 0.00 | 3.85 |
131 | 132 | 9.886132 | GACTTGTATTTAGAAATGAAGGGAGTA | 57.114 | 33.333 | 10.77 | 0.00 | 0.00 | 2.59 |
191 | 192 | 4.879197 | AAAATTTGAGGCCTCTTTCCAG | 57.121 | 40.909 | 32.28 | 0.00 | 0.00 | 3.86 |
192 | 193 | 1.844687 | ATTTGAGGCCTCTTTCCAGC | 58.155 | 50.000 | 32.28 | 5.53 | 0.00 | 4.85 |
196 | 197 | 2.436824 | GGCCTCTTTCCAGCCGTC | 60.437 | 66.667 | 0.00 | 0.00 | 36.84 | 4.79 |
197 | 198 | 2.815647 | GCCTCTTTCCAGCCGTCG | 60.816 | 66.667 | 0.00 | 0.00 | 0.00 | 5.12 |
198 | 199 | 2.815647 | CCTCTTTCCAGCCGTCGC | 60.816 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
199 | 200 | 2.815647 | CTCTTTCCAGCCGTCGCC | 60.816 | 66.667 | 0.00 | 0.00 | 34.57 | 5.54 |
200 | 201 | 3.302347 | CTCTTTCCAGCCGTCGCCT | 62.302 | 63.158 | 0.00 | 0.00 | 34.57 | 5.52 |
201 | 202 | 2.815647 | CTTTCCAGCCGTCGCCTC | 60.816 | 66.667 | 0.00 | 0.00 | 34.57 | 4.70 |
202 | 203 | 4.388499 | TTTCCAGCCGTCGCCTCC | 62.388 | 66.667 | 0.00 | 0.00 | 34.57 | 4.30 |
210 | 211 | 3.068691 | CGTCGCCTCCTCCTCCAA | 61.069 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
211 | 212 | 2.896443 | GTCGCCTCCTCCTCCAAG | 59.104 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
212 | 213 | 1.682684 | GTCGCCTCCTCCTCCAAGA | 60.683 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
213 | 214 | 1.078528 | TCGCCTCCTCCTCCAAGAA | 59.921 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
214 | 215 | 0.544357 | TCGCCTCCTCCTCCAAGAAA | 60.544 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
215 | 216 | 0.324943 | CGCCTCCTCCTCCAAGAAAA | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
216 | 217 | 1.677217 | CGCCTCCTCCTCCAAGAAAAG | 60.677 | 57.143 | 0.00 | 0.00 | 0.00 | 2.27 |
229 | 230 | 1.298953 | AGAAAAGCTAGGGCCATGGA | 58.701 | 50.000 | 18.40 | 0.00 | 39.73 | 3.41 |
308 | 309 | 6.783708 | TCAAGATTTGTTAGGGTTTGTGTT | 57.216 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
474 | 475 | 1.876416 | CGGATCTGGTTGTGGTTCGTT | 60.876 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
564 | 565 | 2.364973 | TGCGCTGGTCCTATGGGA | 60.365 | 61.111 | 9.73 | 0.00 | 39.70 | 4.37 |
759 | 761 | 9.716531 | CTGCCATAACAGAAGATGAATAGATTA | 57.283 | 33.333 | 0.00 | 0.00 | 40.25 | 1.75 |
796 | 798 | 3.333029 | AAAAATTTTGAGGCCCATCCG | 57.667 | 42.857 | 3.73 | 0.00 | 40.77 | 4.18 |
797 | 799 | 1.194218 | AAATTTTGAGGCCCATCCGG | 58.806 | 50.000 | 0.00 | 0.00 | 40.77 | 5.14 |
798 | 800 | 0.041090 | AATTTTGAGGCCCATCCGGT | 59.959 | 50.000 | 0.00 | 0.00 | 40.77 | 5.28 |
799 | 801 | 0.395724 | ATTTTGAGGCCCATCCGGTC | 60.396 | 55.000 | 0.00 | 0.00 | 40.77 | 4.79 |
800 | 802 | 1.784301 | TTTTGAGGCCCATCCGGTCA | 61.784 | 55.000 | 0.00 | 0.00 | 39.53 | 4.02 |
801 | 803 | 2.478335 | TTTGAGGCCCATCCGGTCAC | 62.478 | 60.000 | 0.00 | 0.00 | 39.53 | 3.67 |
802 | 804 | 3.083997 | GAGGCCCATCCGGTCACT | 61.084 | 66.667 | 0.00 | 0.00 | 39.53 | 3.41 |
803 | 805 | 3.391665 | GAGGCCCATCCGGTCACTG | 62.392 | 68.421 | 0.00 | 0.00 | 39.53 | 3.66 |
804 | 806 | 3.717294 | GGCCCATCCGGTCACTGT | 61.717 | 66.667 | 0.00 | 0.00 | 35.67 | 3.55 |
805 | 807 | 2.125106 | GCCCATCCGGTCACTGTC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
806 | 808 | 2.184322 | CCCATCCGGTCACTGTCG | 59.816 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
807 | 809 | 2.646175 | CCCATCCGGTCACTGTCGT | 61.646 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
808 | 810 | 1.446099 | CCATCCGGTCACTGTCGTG | 60.446 | 63.158 | 0.00 | 0.00 | 42.59 | 4.35 |
809 | 811 | 1.446099 | CATCCGGTCACTGTCGTGG | 60.446 | 63.158 | 0.00 | 0.00 | 41.53 | 4.94 |
810 | 812 | 2.646175 | ATCCGGTCACTGTCGTGGG | 61.646 | 63.158 | 0.00 | 0.00 | 41.53 | 4.61 |
828 | 830 | 4.840288 | CGCGCGTCCACGGACATA | 62.840 | 66.667 | 24.19 | 0.00 | 44.77 | 2.29 |
829 | 831 | 2.279252 | GCGCGTCCACGGACATAT | 60.279 | 61.111 | 16.23 | 0.00 | 44.77 | 1.78 |
830 | 832 | 1.008194 | GCGCGTCCACGGACATATA | 60.008 | 57.895 | 16.23 | 0.00 | 44.77 | 0.86 |
831 | 833 | 1.002250 | GCGCGTCCACGGACATATAG | 61.002 | 60.000 | 16.23 | 0.77 | 44.77 | 1.31 |
832 | 834 | 0.589708 | CGCGTCCACGGACATATAGA | 59.410 | 55.000 | 16.23 | 0.00 | 44.77 | 1.98 |
833 | 835 | 1.399855 | CGCGTCCACGGACATATAGAG | 60.400 | 57.143 | 16.23 | 0.00 | 44.77 | 2.43 |
834 | 836 | 1.878088 | GCGTCCACGGACATATAGAGA | 59.122 | 52.381 | 16.23 | 0.00 | 44.77 | 3.10 |
835 | 837 | 2.488545 | GCGTCCACGGACATATAGAGAT | 59.511 | 50.000 | 16.23 | 0.00 | 44.77 | 2.75 |
836 | 838 | 3.426426 | GCGTCCACGGACATATAGAGATC | 60.426 | 52.174 | 16.23 | 0.00 | 44.77 | 2.75 |
837 | 839 | 3.127203 | CGTCCACGGACATATAGAGATCC | 59.873 | 52.174 | 16.23 | 0.00 | 44.77 | 3.36 |
845 | 847 | 5.112686 | GGACATATAGAGATCCGGATTTGC | 58.887 | 45.833 | 20.22 | 11.01 | 0.00 | 3.68 |
846 | 848 | 5.091261 | ACATATAGAGATCCGGATTTGCC | 57.909 | 43.478 | 20.22 | 5.48 | 0.00 | 4.52 |
847 | 849 | 4.780021 | ACATATAGAGATCCGGATTTGCCT | 59.220 | 41.667 | 20.22 | 11.00 | 0.00 | 4.75 |
848 | 850 | 5.958380 | ACATATAGAGATCCGGATTTGCCTA | 59.042 | 40.000 | 20.22 | 16.37 | 0.00 | 3.93 |
849 | 851 | 6.097554 | ACATATAGAGATCCGGATTTGCCTAG | 59.902 | 42.308 | 20.22 | 8.37 | 0.00 | 3.02 |
850 | 852 | 2.964209 | AGAGATCCGGATTTGCCTAGA | 58.036 | 47.619 | 20.22 | 0.00 | 0.00 | 2.43 |
851 | 853 | 3.515562 | AGAGATCCGGATTTGCCTAGAT | 58.484 | 45.455 | 20.22 | 0.00 | 31.96 | 1.98 |
852 | 854 | 3.260380 | AGAGATCCGGATTTGCCTAGATG | 59.740 | 47.826 | 20.22 | 0.00 | 30.10 | 2.90 |
853 | 855 | 2.079925 | GATCCGGATTTGCCTAGATGC | 58.920 | 52.381 | 20.22 | 0.00 | 30.10 | 3.91 |
854 | 856 | 1.131638 | TCCGGATTTGCCTAGATGCT | 58.868 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
855 | 857 | 1.070758 | TCCGGATTTGCCTAGATGCTC | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
856 | 858 | 1.071385 | CCGGATTTGCCTAGATGCTCT | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
857 | 859 | 2.486191 | CCGGATTTGCCTAGATGCTCTT | 60.486 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
858 | 860 | 3.244215 | CCGGATTTGCCTAGATGCTCTTA | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
859 | 861 | 4.564406 | CCGGATTTGCCTAGATGCTCTTAT | 60.564 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
860 | 862 | 4.629200 | CGGATTTGCCTAGATGCTCTTATC | 59.371 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
861 | 863 | 5.555017 | GGATTTGCCTAGATGCTCTTATCA | 58.445 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
862 | 864 | 5.411053 | GGATTTGCCTAGATGCTCTTATCAC | 59.589 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
863 | 865 | 5.357742 | TTTGCCTAGATGCTCTTATCACA | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
864 | 866 | 4.597404 | TGCCTAGATGCTCTTATCACAG | 57.403 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
865 | 867 | 3.244009 | TGCCTAGATGCTCTTATCACAGC | 60.244 | 47.826 | 0.00 | 0.00 | 36.08 | 4.40 |
866 | 868 | 3.573598 | CCTAGATGCTCTTATCACAGCG | 58.426 | 50.000 | 0.00 | 0.00 | 38.59 | 5.18 |
867 | 869 | 3.005261 | CCTAGATGCTCTTATCACAGCGT | 59.995 | 47.826 | 0.00 | 0.00 | 38.59 | 5.07 |
868 | 870 | 3.533606 | AGATGCTCTTATCACAGCGTT | 57.466 | 42.857 | 0.00 | 0.00 | 38.59 | 4.84 |
869 | 871 | 3.866651 | AGATGCTCTTATCACAGCGTTT | 58.133 | 40.909 | 0.00 | 0.00 | 38.59 | 3.60 |
870 | 872 | 3.620374 | AGATGCTCTTATCACAGCGTTTG | 59.380 | 43.478 | 0.00 | 0.00 | 38.59 | 2.93 |
871 | 873 | 3.038788 | TGCTCTTATCACAGCGTTTGA | 57.961 | 42.857 | 0.00 | 0.00 | 38.59 | 2.69 |
872 | 874 | 2.736721 | TGCTCTTATCACAGCGTTTGAC | 59.263 | 45.455 | 0.00 | 0.00 | 38.59 | 3.18 |
873 | 875 | 2.222596 | GCTCTTATCACAGCGTTTGACG | 60.223 | 50.000 | 0.00 | 0.00 | 45.88 | 4.35 |
874 | 876 | 2.333926 | TCTTATCACAGCGTTTGACGG | 58.666 | 47.619 | 2.48 | 0.00 | 42.82 | 4.79 |
875 | 877 | 0.793861 | TTATCACAGCGTTTGACGGC | 59.206 | 50.000 | 2.48 | 0.00 | 42.82 | 5.68 |
876 | 878 | 1.017177 | TATCACAGCGTTTGACGGCC | 61.017 | 55.000 | 0.00 | 0.00 | 42.82 | 6.13 |
877 | 879 | 3.276091 | CACAGCGTTTGACGGCCA | 61.276 | 61.111 | 2.24 | 0.00 | 42.82 | 5.36 |
878 | 880 | 2.281484 | ACAGCGTTTGACGGCCAT | 60.281 | 55.556 | 2.24 | 0.00 | 42.82 | 4.40 |
879 | 881 | 2.325082 | ACAGCGTTTGACGGCCATC | 61.325 | 57.895 | 2.24 | 0.00 | 42.82 | 3.51 |
880 | 882 | 3.118454 | AGCGTTTGACGGCCATCG | 61.118 | 61.111 | 2.24 | 0.00 | 42.82 | 3.84 |
881 | 883 | 3.115892 | GCGTTTGACGGCCATCGA | 61.116 | 61.111 | 2.24 | 0.00 | 42.82 | 3.59 |
882 | 884 | 3.081133 | CGTTTGACGGCCATCGAG | 58.919 | 61.111 | 2.24 | 0.00 | 42.43 | 4.04 |
883 | 885 | 1.445410 | CGTTTGACGGCCATCGAGA | 60.445 | 57.895 | 2.24 | 0.00 | 42.43 | 4.04 |
884 | 886 | 0.806102 | CGTTTGACGGCCATCGAGAT | 60.806 | 55.000 | 2.24 | 0.00 | 42.43 | 2.75 |
885 | 887 | 1.535226 | CGTTTGACGGCCATCGAGATA | 60.535 | 52.381 | 2.24 | 0.00 | 42.43 | 1.98 |
886 | 888 | 1.859080 | GTTTGACGGCCATCGAGATAC | 59.141 | 52.381 | 2.24 | 0.00 | 42.43 | 2.24 |
887 | 889 | 0.030235 | TTGACGGCCATCGAGATACG | 59.970 | 55.000 | 2.24 | 0.00 | 42.43 | 3.06 |
888 | 890 | 1.729838 | GACGGCCATCGAGATACGC | 60.730 | 63.158 | 2.24 | 1.44 | 42.43 | 4.42 |
889 | 891 | 2.335011 | CGGCCATCGAGATACGCA | 59.665 | 61.111 | 2.24 | 0.00 | 42.43 | 5.24 |
890 | 892 | 1.299850 | CGGCCATCGAGATACGCAA | 60.300 | 57.895 | 2.24 | 0.00 | 42.43 | 4.85 |
891 | 893 | 1.278172 | CGGCCATCGAGATACGCAAG | 61.278 | 60.000 | 2.24 | 0.00 | 42.43 | 4.01 |
892 | 894 | 0.946221 | GGCCATCGAGATACGCAAGG | 60.946 | 60.000 | 0.00 | 0.00 | 46.39 | 3.61 |
893 | 895 | 0.946221 | GCCATCGAGATACGCAAGGG | 60.946 | 60.000 | 0.00 | 0.00 | 46.39 | 3.95 |
894 | 896 | 0.673985 | CCATCGAGATACGCAAGGGA | 59.326 | 55.000 | 0.00 | 0.00 | 46.39 | 4.20 |
895 | 897 | 1.273606 | CCATCGAGATACGCAAGGGAT | 59.726 | 52.381 | 0.00 | 0.00 | 46.39 | 3.85 |
896 | 898 | 2.289072 | CCATCGAGATACGCAAGGGATT | 60.289 | 50.000 | 0.00 | 0.00 | 46.39 | 3.01 |
897 | 899 | 2.795175 | TCGAGATACGCAAGGGATTC | 57.205 | 50.000 | 0.00 | 0.00 | 46.39 | 2.52 |
898 | 900 | 1.340248 | TCGAGATACGCAAGGGATTCC | 59.660 | 52.381 | 0.00 | 0.00 | 46.39 | 3.01 |
899 | 901 | 1.784525 | GAGATACGCAAGGGATTCCG | 58.215 | 55.000 | 0.00 | 0.00 | 46.39 | 4.30 |
900 | 902 | 1.340248 | GAGATACGCAAGGGATTCCGA | 59.660 | 52.381 | 0.00 | 0.00 | 46.39 | 4.55 |
901 | 903 | 1.971357 | AGATACGCAAGGGATTCCGAT | 59.029 | 47.619 | 0.00 | 0.00 | 46.39 | 4.18 |
902 | 904 | 2.069273 | GATACGCAAGGGATTCCGATG | 58.931 | 52.381 | 0.00 | 0.00 | 46.39 | 3.84 |
903 | 905 | 0.531974 | TACGCAAGGGATTCCGATGC | 60.532 | 55.000 | 17.07 | 17.07 | 43.00 | 3.91 |
904 | 906 | 1.524621 | CGCAAGGGATTCCGATGCT | 60.525 | 57.895 | 21.76 | 2.39 | 43.71 | 3.79 |
905 | 907 | 1.097547 | CGCAAGGGATTCCGATGCTT | 61.098 | 55.000 | 21.76 | 7.64 | 43.71 | 3.91 |
906 | 908 | 0.383231 | GCAAGGGATTCCGATGCTTG | 59.617 | 55.000 | 18.85 | 15.69 | 43.06 | 4.01 |
907 | 909 | 0.383231 | CAAGGGATTCCGATGCTTGC | 59.617 | 55.000 | 6.52 | 0.00 | 38.33 | 4.01 |
908 | 910 | 0.753111 | AAGGGATTCCGATGCTTGCC | 60.753 | 55.000 | 0.00 | 0.00 | 38.33 | 4.52 |
909 | 911 | 1.453745 | GGGATTCCGATGCTTGCCA | 60.454 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
910 | 912 | 1.450531 | GGGATTCCGATGCTTGCCAG | 61.451 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
921 | 923 | 2.591923 | TGCTTGCCAGAAAATACACCA | 58.408 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
950 | 952 | 0.382158 | CTCTCAGCAGCATTGGCATG | 59.618 | 55.000 | 0.00 | 0.00 | 44.61 | 4.06 |
1004 | 1006 | 0.251121 | ATGTCCAACGGCACCATGAA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1308 | 1310 | 1.304217 | TCACCTGTCCCTCGACCTC | 60.304 | 63.158 | 0.00 | 0.00 | 38.32 | 3.85 |
1475 | 1477 | 2.877691 | GTTCAACGGCATGGAGGC | 59.122 | 61.111 | 0.00 | 0.00 | 39.93 | 4.70 |
1644 | 1646 | 2.029623 | GCAAGCCATGACATCCAATCT | 58.970 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
1645 | 1647 | 2.034305 | GCAAGCCATGACATCCAATCTC | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1646 | 1648 | 3.284617 | CAAGCCATGACATCCAATCTCA | 58.715 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
1668 | 1676 | 4.821589 | CCTTCCTGCCTCGACCGC | 62.822 | 72.222 | 0.00 | 0.00 | 0.00 | 5.68 |
1682 | 1690 | 0.741221 | GACCGCCGATCTTCAGCTTT | 60.741 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1683 | 1691 | 1.021390 | ACCGCCGATCTTCAGCTTTG | 61.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1686 | 1694 | 1.717937 | CCGATCTTCAGCTTTGCCG | 59.282 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
1774 | 1782 | 0.317479 | ACCTGACGTTCGGGAAGAAG | 59.683 | 55.000 | 16.66 | 0.00 | 45.95 | 2.85 |
1904 | 1912 | 5.833131 | ACCAATGATCCTAATGGCGTATTTT | 59.167 | 36.000 | 0.00 | 0.00 | 36.37 | 1.82 |
1936 | 1944 | 5.993106 | AGGTTCTTTTCTTCGACTTCTTG | 57.007 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
1951 | 1962 | 6.876789 | TCGACTTCTTGCATTAGGATGTTTTA | 59.123 | 34.615 | 0.00 | 0.00 | 35.63 | 1.52 |
2206 | 2503 | 2.146342 | AGCAGGAATTGAACACGTGAG | 58.854 | 47.619 | 25.01 | 0.00 | 0.00 | 3.51 |
2257 | 2561 | 3.004315 | TCCTTTGGTCTTGACGCAATTTC | 59.996 | 43.478 | 5.84 | 0.00 | 0.00 | 2.17 |
2258 | 2562 | 3.308530 | CTTTGGTCTTGACGCAATTTCC | 58.691 | 45.455 | 5.84 | 0.00 | 0.00 | 3.13 |
2335 | 2639 | 0.898320 | AGACCGTGGACATTCTCAGG | 59.102 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2430 | 2734 | 5.183140 | GCTCCATGTTTGTAATGGTTAGTGT | 59.817 | 40.000 | 2.57 | 0.00 | 44.27 | 3.55 |
2461 | 2765 | 1.199789 | GTTGCCAAGACATCATGCGAA | 59.800 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
2462 | 2766 | 1.753930 | TGCCAAGACATCATGCGAAT | 58.246 | 45.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2464 | 2768 | 1.268896 | GCCAAGACATCATGCGAATGG | 60.269 | 52.381 | 2.82 | 0.00 | 0.00 | 3.16 |
2465 | 2769 | 2.019249 | CCAAGACATCATGCGAATGGT | 58.981 | 47.619 | 2.82 | 0.00 | 0.00 | 3.55 |
2467 | 2771 | 3.119388 | CCAAGACATCATGCGAATGGTTT | 60.119 | 43.478 | 2.82 | 0.00 | 0.00 | 3.27 |
2468 | 2772 | 3.770263 | AGACATCATGCGAATGGTTTG | 57.230 | 42.857 | 2.82 | 2.14 | 0.00 | 2.93 |
2478 | 2783 | 2.598589 | CGAATGGTTTGTTGCTGATGG | 58.401 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
2486 | 2791 | 4.022416 | GGTTTGTTGCTGATGGTGTATGAA | 60.022 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2489 | 2794 | 5.781210 | TGTTGCTGATGGTGTATGAAAAA | 57.219 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
2500 | 2805 | 9.369904 | GATGGTGTATGAAAAATTTTACTGCAT | 57.630 | 29.630 | 3.34 | 8.38 | 0.00 | 3.96 |
2501 | 2806 | 9.723601 | ATGGTGTATGAAAAATTTTACTGCATT | 57.276 | 25.926 | 3.34 | 0.00 | 0.00 | 3.56 |
2502 | 2807 | 9.553064 | TGGTGTATGAAAAATTTTACTGCATTT | 57.447 | 25.926 | 3.34 | 0.00 | 0.00 | 2.32 |
2609 | 2914 | 2.627699 | CAGTGGTTGTTTTGCCAGGTAT | 59.372 | 45.455 | 0.00 | 0.00 | 35.14 | 2.73 |
2611 | 2916 | 3.824443 | AGTGGTTGTTTTGCCAGGTATAC | 59.176 | 43.478 | 0.00 | 0.00 | 35.14 | 1.47 |
2622 | 2934 | 5.339008 | TGCCAGGTATACTACAGTTTGAG | 57.661 | 43.478 | 2.25 | 0.00 | 0.00 | 3.02 |
2628 | 2940 | 7.364408 | CCAGGTATACTACAGTTTGAGCCTAAA | 60.364 | 40.741 | 2.25 | 0.00 | 0.00 | 1.85 |
2630 | 2942 | 8.039538 | AGGTATACTACAGTTTGAGCCTAAAAC | 58.960 | 37.037 | 2.25 | 0.00 | 37.71 | 2.43 |
2631 | 2943 | 8.039538 | GGTATACTACAGTTTGAGCCTAAAACT | 58.960 | 37.037 | 1.00 | 1.00 | 46.25 | 2.66 |
2632 | 2944 | 9.085250 | GTATACTACAGTTTGAGCCTAAAACTC | 57.915 | 37.037 | 4.08 | 0.00 | 44.11 | 3.01 |
2633 | 2945 | 5.925509 | ACTACAGTTTGAGCCTAAAACTCA | 58.074 | 37.500 | 4.08 | 0.00 | 44.11 | 3.41 |
2634 | 2946 | 6.534634 | ACTACAGTTTGAGCCTAAAACTCAT | 58.465 | 36.000 | 4.08 | 0.00 | 44.11 | 2.90 |
2635 | 2947 | 6.998673 | ACTACAGTTTGAGCCTAAAACTCATT | 59.001 | 34.615 | 4.08 | 0.00 | 44.11 | 2.57 |
2636 | 2948 | 6.076981 | ACAGTTTGAGCCTAAAACTCATTG | 57.923 | 37.500 | 4.08 | 0.00 | 44.11 | 2.82 |
2637 | 2949 | 4.919754 | CAGTTTGAGCCTAAAACTCATTGC | 59.080 | 41.667 | 4.08 | 0.00 | 44.11 | 3.56 |
2638 | 2950 | 4.584325 | AGTTTGAGCCTAAAACTCATTGCA | 59.416 | 37.500 | 1.00 | 0.00 | 42.75 | 4.08 |
2639 | 2951 | 5.244626 | AGTTTGAGCCTAAAACTCATTGCAT | 59.755 | 36.000 | 1.00 | 0.00 | 42.75 | 3.96 |
2640 | 2952 | 6.434028 | AGTTTGAGCCTAAAACTCATTGCATA | 59.566 | 34.615 | 1.00 | 0.00 | 42.75 | 3.14 |
2641 | 2953 | 6.441093 | TTGAGCCTAAAACTCATTGCATAG | 57.559 | 37.500 | 0.00 | 0.00 | 43.40 | 2.23 |
2642 | 2954 | 4.336433 | TGAGCCTAAAACTCATTGCATAGC | 59.664 | 41.667 | 0.00 | 0.00 | 39.21 | 2.97 |
2643 | 2955 | 4.530875 | AGCCTAAAACTCATTGCATAGCT | 58.469 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
2644 | 2956 | 4.337555 | AGCCTAAAACTCATTGCATAGCTG | 59.662 | 41.667 | 0.00 | 0.00 | 0.00 | 4.24 |
2645 | 2957 | 4.096984 | GCCTAAAACTCATTGCATAGCTGT | 59.903 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2646 | 2958 | 5.575957 | CCTAAAACTCATTGCATAGCTGTG | 58.424 | 41.667 | 6.03 | 6.03 | 0.00 | 3.66 |
2647 | 2959 | 4.445452 | AAAACTCATTGCATAGCTGTGG | 57.555 | 40.909 | 12.79 | 0.00 | 0.00 | 4.17 |
2658 | 2970 | 4.163268 | TGCATAGCTGTGGTACAGGATTTA | 59.837 | 41.667 | 12.79 | 0.00 | 46.01 | 1.40 |
2659 | 2971 | 5.163205 | TGCATAGCTGTGGTACAGGATTTAT | 60.163 | 40.000 | 12.79 | 0.00 | 46.01 | 1.40 |
2660 | 2972 | 5.765182 | GCATAGCTGTGGTACAGGATTTATT | 59.235 | 40.000 | 12.79 | 0.00 | 46.01 | 1.40 |
2661 | 2973 | 6.263168 | GCATAGCTGTGGTACAGGATTTATTT | 59.737 | 38.462 | 12.79 | 0.00 | 46.01 | 1.40 |
2662 | 2974 | 7.201821 | GCATAGCTGTGGTACAGGATTTATTTT | 60.202 | 37.037 | 12.79 | 0.00 | 46.01 | 1.82 |
2663 | 2975 | 8.686334 | CATAGCTGTGGTACAGGATTTATTTTT | 58.314 | 33.333 | 10.62 | 0.00 | 46.01 | 1.94 |
2687 | 2999 | 5.518848 | TTGCTTTCTTTCTTCAGCAATCA | 57.481 | 34.783 | 1.34 | 0.00 | 45.19 | 2.57 |
2688 | 3000 | 5.717078 | TGCTTTCTTTCTTCAGCAATCAT | 57.283 | 34.783 | 0.00 | 0.00 | 39.32 | 2.45 |
2689 | 3001 | 6.822667 | TGCTTTCTTTCTTCAGCAATCATA | 57.177 | 33.333 | 0.00 | 0.00 | 39.32 | 2.15 |
2690 | 3002 | 6.849502 | TGCTTTCTTTCTTCAGCAATCATAG | 58.150 | 36.000 | 0.00 | 0.00 | 39.32 | 2.23 |
2691 | 3003 | 5.742926 | GCTTTCTTTCTTCAGCAATCATAGC | 59.257 | 40.000 | 0.00 | 0.00 | 32.17 | 2.97 |
2692 | 3004 | 6.404513 | GCTTTCTTTCTTCAGCAATCATAGCT | 60.405 | 38.462 | 0.00 | 0.00 | 44.62 | 3.32 |
2700 | 3012 | 3.912496 | AGCAATCATAGCTGTGGTACA | 57.088 | 42.857 | 10.87 | 0.00 | 41.61 | 2.90 |
2713 | 3025 | 5.940192 | CTGTGGTACAGTTTGAGCATAAA | 57.060 | 39.130 | 0.00 | 0.00 | 41.80 | 1.40 |
2714 | 3026 | 6.312399 | CTGTGGTACAGTTTGAGCATAAAA | 57.688 | 37.500 | 0.00 | 0.00 | 41.80 | 1.52 |
2715 | 3027 | 6.067263 | TGTGGTACAGTTTGAGCATAAAAC | 57.933 | 37.500 | 0.00 | 0.00 | 41.80 | 2.43 |
2716 | 3028 | 5.825679 | TGTGGTACAGTTTGAGCATAAAACT | 59.174 | 36.000 | 5.81 | 5.81 | 41.80 | 2.66 |
2717 | 3029 | 6.017440 | TGTGGTACAGTTTGAGCATAAAACTC | 60.017 | 38.462 | 8.07 | 0.00 | 41.80 | 3.01 |
2718 | 3030 | 5.178623 | TGGTACAGTTTGAGCATAAAACTCG | 59.821 | 40.000 | 8.07 | 7.29 | 36.94 | 4.18 |
2719 | 3031 | 5.407387 | GGTACAGTTTGAGCATAAAACTCGA | 59.593 | 40.000 | 8.07 | 0.00 | 36.94 | 4.04 |
2720 | 3032 | 5.597813 | ACAGTTTGAGCATAAAACTCGAG | 57.402 | 39.130 | 11.84 | 11.84 | 36.94 | 4.04 |
2721 | 3033 | 4.083802 | ACAGTTTGAGCATAAAACTCGAGC | 60.084 | 41.667 | 13.61 | 0.00 | 36.94 | 5.03 |
2722 | 3034 | 4.153117 | CAGTTTGAGCATAAAACTCGAGCT | 59.847 | 41.667 | 13.61 | 1.87 | 36.94 | 4.09 |
2727 | 3039 | 4.871993 | AGCATAAAACTCGAGCTCATTG | 57.128 | 40.909 | 13.61 | 6.62 | 0.00 | 2.82 |
2728 | 3040 | 3.064545 | AGCATAAAACTCGAGCTCATTGC | 59.935 | 43.478 | 13.61 | 16.10 | 43.29 | 3.56 |
2729 | 3041 | 3.181507 | GCATAAAACTCGAGCTCATTGCA | 60.182 | 43.478 | 13.61 | 0.00 | 45.94 | 4.08 |
2730 | 3042 | 4.497006 | GCATAAAACTCGAGCTCATTGCAT | 60.497 | 41.667 | 13.61 | 0.00 | 45.94 | 3.96 |
2731 | 3043 | 5.277490 | GCATAAAACTCGAGCTCATTGCATA | 60.277 | 40.000 | 13.61 | 0.17 | 45.94 | 3.14 |
2732 | 3044 | 6.567321 | GCATAAAACTCGAGCTCATTGCATAT | 60.567 | 38.462 | 13.61 | 2.63 | 45.94 | 1.78 |
2733 | 3045 | 5.415415 | AAAACTCGAGCTCATTGCATATC | 57.585 | 39.130 | 13.61 | 0.00 | 45.94 | 1.63 |
2734 | 3046 | 4.333913 | AACTCGAGCTCATTGCATATCT | 57.666 | 40.909 | 13.61 | 0.00 | 45.94 | 1.98 |
2735 | 3047 | 3.651206 | ACTCGAGCTCATTGCATATCTG | 58.349 | 45.455 | 13.61 | 0.00 | 45.94 | 2.90 |
2736 | 3048 | 3.069300 | ACTCGAGCTCATTGCATATCTGT | 59.931 | 43.478 | 13.61 | 0.00 | 45.94 | 3.41 |
2737 | 3049 | 3.387397 | TCGAGCTCATTGCATATCTGTG | 58.613 | 45.455 | 15.40 | 0.00 | 45.94 | 3.66 |
2738 | 3050 | 2.479275 | CGAGCTCATTGCATATCTGTGG | 59.521 | 50.000 | 15.40 | 0.00 | 45.94 | 4.17 |
2739 | 3051 | 3.474600 | GAGCTCATTGCATATCTGTGGT | 58.525 | 45.455 | 9.40 | 0.00 | 45.94 | 4.16 |
2740 | 3052 | 4.635223 | GAGCTCATTGCATATCTGTGGTA | 58.365 | 43.478 | 9.40 | 0.00 | 45.94 | 3.25 |
2741 | 3053 | 4.384056 | AGCTCATTGCATATCTGTGGTAC | 58.616 | 43.478 | 0.00 | 0.00 | 45.94 | 3.34 |
2742 | 3054 | 4.129380 | GCTCATTGCATATCTGTGGTACA | 58.871 | 43.478 | 0.00 | 0.00 | 42.31 | 2.90 |
2743 | 3055 | 4.758674 | GCTCATTGCATATCTGTGGTACAT | 59.241 | 41.667 | 0.00 | 0.00 | 41.11 | 2.29 |
2744 | 3056 | 5.334646 | GCTCATTGCATATCTGTGGTACATG | 60.335 | 44.000 | 0.00 | 0.00 | 41.11 | 3.21 |
2745 | 3057 | 5.927819 | TCATTGCATATCTGTGGTACATGA | 58.072 | 37.500 | 0.00 | 0.00 | 44.52 | 3.07 |
2746 | 3058 | 6.536447 | TCATTGCATATCTGTGGTACATGAT | 58.464 | 36.000 | 0.00 | 0.00 | 44.52 | 2.45 |
2899 | 3213 | 0.176680 | TCTCTCGAAGATGGCCTTGC | 59.823 | 55.000 | 3.32 | 0.00 | 34.68 | 4.01 |
2900 | 3214 | 0.177604 | CTCTCGAAGATGGCCTTGCT | 59.822 | 55.000 | 3.32 | 0.00 | 34.68 | 3.91 |
2939 | 3253 | 3.330766 | GCGACACAGCGAGACTAAT | 57.669 | 52.632 | 0.00 | 0.00 | 0.00 | 1.73 |
2946 | 3260 | 4.734917 | ACACAGCGAGACTAATAAGTGAC | 58.265 | 43.478 | 0.00 | 0.00 | 35.56 | 3.67 |
2972 | 3286 | 0.183492 | AGCTCACAAGTTCCCTGCAA | 59.817 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2973 | 3287 | 1.032014 | GCTCACAAGTTCCCTGCAAA | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
3014 | 3328 | 9.826574 | TTCCTACAAATAACCACTATGTATGTC | 57.173 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
3176 | 3498 | 8.211629 | GGTGACAATTGTAGGGAATCTATAGTT | 58.788 | 37.037 | 11.95 | 0.00 | 0.00 | 2.24 |
3185 | 3507 | 6.893020 | AGGGAATCTATAGTTTGGAACACT | 57.107 | 37.500 | 0.69 | 0.00 | 39.29 | 3.55 |
3241 | 3563 | 7.027161 | TGTTAACTTGTGTTCTTTCTTTGAGC | 58.973 | 34.615 | 7.22 | 0.00 | 37.59 | 4.26 |
3243 | 3565 | 5.643379 | ACTTGTGTTCTTTCTTTGAGCAA | 57.357 | 34.783 | 0.00 | 0.00 | 0.00 | 3.91 |
3256 | 3578 | 3.475566 | TTGAGCAAAGGATAGGATCGG | 57.524 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
3276 | 3598 | 1.408405 | GGAGCTAAACCTTAGGTGCCC | 60.408 | 57.143 | 3.99 | 4.52 | 35.34 | 5.36 |
3277 | 3599 | 0.252197 | AGCTAAACCTTAGGTGCCCG | 59.748 | 55.000 | 3.99 | 0.00 | 35.34 | 6.13 |
3278 | 3600 | 0.251073 | GCTAAACCTTAGGTGCCCGA | 59.749 | 55.000 | 3.99 | 0.00 | 35.34 | 5.14 |
3279 | 3601 | 1.742750 | GCTAAACCTTAGGTGCCCGAG | 60.743 | 57.143 | 3.99 | 0.00 | 35.34 | 4.63 |
3280 | 3602 | 1.829222 | CTAAACCTTAGGTGCCCGAGA | 59.171 | 52.381 | 3.99 | 0.00 | 35.34 | 4.04 |
3287 | 3609 | 1.640917 | TAGGTGCCCGAGAGAGTTTT | 58.359 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3361 | 3683 | 4.583426 | TGTTTTTGTGTCATCGAAAGACG | 58.417 | 39.130 | 14.27 | 0.00 | 46.97 | 4.18 |
3380 | 3702 | 0.602372 | GAGGAATCCCTGATGAGCGC | 60.602 | 60.000 | 0.00 | 0.00 | 44.53 | 5.92 |
3391 | 3713 | 0.179134 | GATGAGCGCTGAAGTACCGT | 60.179 | 55.000 | 18.48 | 0.00 | 0.00 | 4.83 |
3394 | 3716 | 0.866483 | GAGCGCTGAAGTACCGTAGC | 60.866 | 60.000 | 18.48 | 0.00 | 0.00 | 3.58 |
3430 | 3761 | 3.836949 | CGGCATTGCACAGAATAAAAGT | 58.163 | 40.909 | 11.39 | 0.00 | 0.00 | 2.66 |
3435 | 3766 | 6.369615 | GGCATTGCACAGAATAAAAGTTTCAT | 59.630 | 34.615 | 11.39 | 0.00 | 0.00 | 2.57 |
3442 | 3773 | 8.082242 | GCACAGAATAAAAGTTTCATGGTAGTT | 58.918 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
3480 | 4035 | 6.446909 | TGGCAGTTGTATCCCATATAATCA | 57.553 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3489 | 4044 | 8.966155 | TGTATCCCATATAATCAGTACTGGAA | 57.034 | 34.615 | 22.48 | 4.80 | 0.00 | 3.53 |
3504 | 4059 | 8.584157 | TCAGTACTGGAAAGTTACGGTATTTTA | 58.416 | 33.333 | 22.48 | 0.00 | 35.43 | 1.52 |
3532 | 4087 | 3.122948 | CGGAATCGACGTCTTTGAATTGT | 59.877 | 43.478 | 14.70 | 0.00 | 39.00 | 2.71 |
3576 | 4131 | 2.496070 | GTGTGTATAGAGAGTGGTGGCA | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
3604 | 4159 | 0.823356 | GGTGGTCAAGTGTGGCATGT | 60.823 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3610 | 4165 | 2.225019 | GTCAAGTGTGGCATGTTCAGAG | 59.775 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3631 | 4186 | 7.611855 | TCAGAGGTCCTCTAATTTTGAATTTCC | 59.388 | 37.037 | 21.41 | 0.00 | 38.99 | 3.13 |
3694 | 4249 | 5.591099 | AGTGTCGAAGCAAATGATTTGTTT | 58.409 | 33.333 | 17.85 | 17.85 | 44.96 | 2.83 |
3777 | 4332 | 9.965824 | ACCTTGATGTAACTTTTACTTTGATTG | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 2.67 |
3789 | 4344 | 1.788308 | CTTTGATTGCGTGCCTTTGTG | 59.212 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
3847 | 4402 | 6.463995 | TTGCTTACTTGATCAACCAAAGTT | 57.536 | 33.333 | 3.38 | 0.00 | 36.33 | 2.66 |
3930 | 4485 | 5.957774 | AGCAATTCCCCATACAAAACTACAT | 59.042 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3939 | 4494 | 6.753279 | CCCATACAAAACTACATCATGCAAAG | 59.247 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 9.767684 | CGTATGCAGTTTGTATTGAAATCTTTA | 57.232 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
1 | 2 | 7.754924 | CCGTATGCAGTTTGTATTGAAATCTTT | 59.245 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2 | 3 | 7.120579 | TCCGTATGCAGTTTGTATTGAAATCTT | 59.879 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
3 | 4 | 6.597672 | TCCGTATGCAGTTTGTATTGAAATCT | 59.402 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
4 | 5 | 6.781138 | TCCGTATGCAGTTTGTATTGAAATC | 58.219 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5 | 6 | 6.751514 | TCCGTATGCAGTTTGTATTGAAAT | 57.248 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
6 | 7 | 6.597672 | AGATCCGTATGCAGTTTGTATTGAAA | 59.402 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
7 | 8 | 6.112734 | AGATCCGTATGCAGTTTGTATTGAA | 58.887 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
8 | 9 | 5.670485 | AGATCCGTATGCAGTTTGTATTGA | 58.330 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
9 | 10 | 5.991328 | AGATCCGTATGCAGTTTGTATTG | 57.009 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
12 | 13 | 9.457436 | TCTATATAGATCCGTATGCAGTTTGTA | 57.543 | 33.333 | 8.44 | 0.00 | 0.00 | 2.41 |
13 | 14 | 8.244802 | GTCTATATAGATCCGTATGCAGTTTGT | 58.755 | 37.037 | 15.43 | 0.00 | 34.39 | 2.83 |
14 | 15 | 8.244113 | TGTCTATATAGATCCGTATGCAGTTTG | 58.756 | 37.037 | 15.43 | 0.00 | 34.39 | 2.93 |
15 | 16 | 8.349568 | TGTCTATATAGATCCGTATGCAGTTT | 57.650 | 34.615 | 15.43 | 0.00 | 34.39 | 2.66 |
16 | 17 | 7.939784 | TGTCTATATAGATCCGTATGCAGTT | 57.060 | 36.000 | 15.43 | 0.00 | 34.39 | 3.16 |
17 | 18 | 9.800572 | ATATGTCTATATAGATCCGTATGCAGT | 57.199 | 33.333 | 15.43 | 0.00 | 34.39 | 4.40 |
45 | 46 | 8.806146 | AGCAAAATGAGTGAACCTACATTTTAT | 58.194 | 29.630 | 13.60 | 6.09 | 45.06 | 1.40 |
46 | 47 | 8.177119 | AGCAAAATGAGTGAACCTACATTTTA | 57.823 | 30.769 | 13.60 | 0.00 | 45.06 | 1.52 |
47 | 48 | 7.054491 | AGCAAAATGAGTGAACCTACATTTT | 57.946 | 32.000 | 0.00 | 0.00 | 46.58 | 1.82 |
48 | 49 | 6.655078 | AGCAAAATGAGTGAACCTACATTT | 57.345 | 33.333 | 0.00 | 0.00 | 42.25 | 2.32 |
49 | 50 | 6.568462 | CGAAGCAAAATGAGTGAACCTACATT | 60.568 | 38.462 | 0.00 | 0.00 | 34.99 | 2.71 |
50 | 51 | 5.106555 | CGAAGCAAAATGAGTGAACCTACAT | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
51 | 52 | 4.213270 | CGAAGCAAAATGAGTGAACCTACA | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
52 | 53 | 4.213482 | ACGAAGCAAAATGAGTGAACCTAC | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
53 | 54 | 4.385825 | ACGAAGCAAAATGAGTGAACCTA | 58.614 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
54 | 55 | 3.214328 | ACGAAGCAAAATGAGTGAACCT | 58.786 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
55 | 56 | 3.626028 | ACGAAGCAAAATGAGTGAACC | 57.374 | 42.857 | 0.00 | 0.00 | 0.00 | 3.62 |
56 | 57 | 7.684670 | TCATATACGAAGCAAAATGAGTGAAC | 58.315 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
57 | 58 | 7.841915 | TCATATACGAAGCAAAATGAGTGAA | 57.158 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
58 | 59 | 7.928167 | AGATCATATACGAAGCAAAATGAGTGA | 59.072 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
59 | 60 | 8.081208 | AGATCATATACGAAGCAAAATGAGTG | 57.919 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
60 | 61 | 8.668510 | AAGATCATATACGAAGCAAAATGAGT | 57.331 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
61 | 62 | 9.941664 | AAAAGATCATATACGAAGCAAAATGAG | 57.058 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
102 | 103 | 9.807921 | TCCCTTCATTTCTAAATACAAGTCTTT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
103 | 104 | 9.454859 | CTCCCTTCATTTCTAAATACAAGTCTT | 57.545 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
104 | 105 | 8.606830 | ACTCCCTTCATTTCTAAATACAAGTCT | 58.393 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
105 | 106 | 8.794335 | ACTCCCTTCATTTCTAAATACAAGTC | 57.206 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
169 | 170 | 4.503817 | GCTGGAAAGAGGCCTCAAATTTTT | 60.504 | 41.667 | 33.90 | 23.73 | 0.00 | 1.94 |
170 | 171 | 3.007290 | GCTGGAAAGAGGCCTCAAATTTT | 59.993 | 43.478 | 33.90 | 24.10 | 0.00 | 1.82 |
171 | 172 | 2.564504 | GCTGGAAAGAGGCCTCAAATTT | 59.435 | 45.455 | 33.90 | 24.45 | 0.00 | 1.82 |
172 | 173 | 2.174360 | GCTGGAAAGAGGCCTCAAATT | 58.826 | 47.619 | 33.90 | 24.05 | 0.00 | 1.82 |
173 | 174 | 1.618074 | GGCTGGAAAGAGGCCTCAAAT | 60.618 | 52.381 | 33.90 | 19.28 | 42.31 | 2.32 |
174 | 175 | 0.251341 | GGCTGGAAAGAGGCCTCAAA | 60.251 | 55.000 | 33.90 | 13.30 | 42.31 | 2.69 |
175 | 176 | 1.380302 | GGCTGGAAAGAGGCCTCAA | 59.620 | 57.895 | 33.90 | 12.96 | 42.31 | 3.02 |
176 | 177 | 2.959484 | CGGCTGGAAAGAGGCCTCA | 61.959 | 63.158 | 33.90 | 13.26 | 43.29 | 3.86 |
177 | 178 | 2.124942 | CGGCTGGAAAGAGGCCTC | 60.125 | 66.667 | 26.22 | 26.22 | 43.29 | 4.70 |
178 | 179 | 2.930562 | ACGGCTGGAAAGAGGCCT | 60.931 | 61.111 | 3.86 | 3.86 | 43.29 | 5.19 |
179 | 180 | 2.436824 | GACGGCTGGAAAGAGGCC | 60.437 | 66.667 | 0.00 | 0.00 | 42.18 | 5.19 |
180 | 181 | 2.815647 | CGACGGCTGGAAAGAGGC | 60.816 | 66.667 | 0.00 | 0.00 | 35.19 | 4.70 |
181 | 182 | 2.815647 | GCGACGGCTGGAAAGAGG | 60.816 | 66.667 | 0.00 | 0.00 | 35.83 | 3.69 |
182 | 183 | 2.815647 | GGCGACGGCTGGAAAGAG | 60.816 | 66.667 | 15.00 | 0.00 | 39.81 | 2.85 |
183 | 184 | 3.296709 | GAGGCGACGGCTGGAAAGA | 62.297 | 63.158 | 30.01 | 0.00 | 38.98 | 2.52 |
184 | 185 | 2.815647 | GAGGCGACGGCTGGAAAG | 60.816 | 66.667 | 30.01 | 0.00 | 38.98 | 2.62 |
185 | 186 | 4.388499 | GGAGGCGACGGCTGGAAA | 62.388 | 66.667 | 30.01 | 0.00 | 38.98 | 3.13 |
193 | 194 | 3.068691 | TTGGAGGAGGAGGCGACG | 61.069 | 66.667 | 0.00 | 0.00 | 0.00 | 5.12 |
194 | 195 | 1.258445 | TTCTTGGAGGAGGAGGCGAC | 61.258 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
195 | 196 | 0.544357 | TTTCTTGGAGGAGGAGGCGA | 60.544 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
196 | 197 | 0.324943 | TTTTCTTGGAGGAGGAGGCG | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
197 | 198 | 1.952839 | GCTTTTCTTGGAGGAGGAGGC | 60.953 | 57.143 | 0.00 | 0.00 | 0.00 | 4.70 |
198 | 199 | 1.632920 | AGCTTTTCTTGGAGGAGGAGG | 59.367 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
199 | 200 | 3.118445 | CCTAGCTTTTCTTGGAGGAGGAG | 60.118 | 52.174 | 0.00 | 0.00 | 39.64 | 3.69 |
200 | 201 | 2.840651 | CCTAGCTTTTCTTGGAGGAGGA | 59.159 | 50.000 | 0.00 | 0.00 | 39.64 | 3.71 |
201 | 202 | 2.092699 | CCCTAGCTTTTCTTGGAGGAGG | 60.093 | 54.545 | 0.00 | 0.00 | 39.64 | 4.30 |
202 | 203 | 2.682269 | GCCCTAGCTTTTCTTGGAGGAG | 60.682 | 54.545 | 0.00 | 0.00 | 39.64 | 3.69 |
203 | 204 | 1.282157 | GCCCTAGCTTTTCTTGGAGGA | 59.718 | 52.381 | 0.00 | 0.00 | 39.64 | 3.71 |
204 | 205 | 1.683319 | GGCCCTAGCTTTTCTTGGAGG | 60.683 | 57.143 | 0.00 | 0.00 | 39.64 | 4.30 |
205 | 206 | 1.004745 | TGGCCCTAGCTTTTCTTGGAG | 59.995 | 52.381 | 0.00 | 0.00 | 39.64 | 3.86 |
206 | 207 | 1.072266 | TGGCCCTAGCTTTTCTTGGA | 58.928 | 50.000 | 0.00 | 0.00 | 39.64 | 3.53 |
207 | 208 | 1.753073 | CATGGCCCTAGCTTTTCTTGG | 59.247 | 52.381 | 0.00 | 0.00 | 39.73 | 3.61 |
208 | 209 | 1.753073 | CCATGGCCCTAGCTTTTCTTG | 59.247 | 52.381 | 0.00 | 0.00 | 39.73 | 3.02 |
209 | 210 | 1.640670 | TCCATGGCCCTAGCTTTTCTT | 59.359 | 47.619 | 6.96 | 0.00 | 39.73 | 2.52 |
210 | 211 | 1.213926 | CTCCATGGCCCTAGCTTTTCT | 59.786 | 52.381 | 6.96 | 0.00 | 39.73 | 2.52 |
211 | 212 | 1.685148 | CTCCATGGCCCTAGCTTTTC | 58.315 | 55.000 | 6.96 | 0.00 | 39.73 | 2.29 |
212 | 213 | 0.259938 | CCTCCATGGCCCTAGCTTTT | 59.740 | 55.000 | 6.96 | 0.00 | 39.73 | 2.27 |
213 | 214 | 1.925888 | CCTCCATGGCCCTAGCTTT | 59.074 | 57.895 | 6.96 | 0.00 | 39.73 | 3.51 |
214 | 215 | 3.666122 | CCTCCATGGCCCTAGCTT | 58.334 | 61.111 | 6.96 | 0.00 | 39.73 | 3.74 |
308 | 309 | 2.619147 | CGTCTCGTCTTCCTGAGTAGA | 58.381 | 52.381 | 0.00 | 0.00 | 33.88 | 2.59 |
474 | 475 | 4.330944 | ACCTGAAGACACACGAACATAA | 57.669 | 40.909 | 0.00 | 0.00 | 0.00 | 1.90 |
564 | 565 | 0.243095 | GGAAGTCGTCGTGCTAAGGT | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
726 | 728 | 5.222079 | TCTTCTGTTATGGCAGTACAACA | 57.778 | 39.130 | 6.03 | 6.33 | 37.70 | 3.33 |
782 | 784 | 2.227757 | TGACCGGATGGGCCTCAAA | 61.228 | 57.895 | 9.46 | 0.00 | 46.01 | 2.69 |
783 | 785 | 2.609299 | TGACCGGATGGGCCTCAA | 60.609 | 61.111 | 9.46 | 0.00 | 46.01 | 3.02 |
784 | 786 | 3.399181 | GTGACCGGATGGGCCTCA | 61.399 | 66.667 | 9.46 | 0.00 | 46.01 | 3.86 |
785 | 787 | 3.083997 | AGTGACCGGATGGGCCTC | 61.084 | 66.667 | 9.46 | 0.00 | 46.01 | 4.70 |
786 | 788 | 3.402681 | CAGTGACCGGATGGGCCT | 61.403 | 66.667 | 9.46 | 0.00 | 46.01 | 5.19 |
787 | 789 | 3.682292 | GACAGTGACCGGATGGGCC | 62.682 | 68.421 | 9.46 | 0.00 | 46.01 | 5.80 |
789 | 791 | 2.184322 | CGACAGTGACCGGATGGG | 59.816 | 66.667 | 9.46 | 0.00 | 40.75 | 4.00 |
790 | 792 | 2.970639 | ACGACAGTGACCGGATGG | 59.029 | 61.111 | 9.46 | 0.00 | 42.84 | 3.51 |
816 | 818 | 3.127203 | CGGATCTCTATATGTCCGTGGAC | 59.873 | 52.174 | 12.17 | 12.17 | 46.29 | 4.02 |
817 | 819 | 3.344515 | CGGATCTCTATATGTCCGTGGA | 58.655 | 50.000 | 4.60 | 0.00 | 46.29 | 4.02 |
818 | 820 | 3.766676 | CGGATCTCTATATGTCCGTGG | 57.233 | 52.381 | 4.60 | 0.00 | 46.29 | 4.94 |
822 | 824 | 5.112686 | GCAAATCCGGATCTCTATATGTCC | 58.887 | 45.833 | 19.43 | 0.00 | 0.00 | 4.02 |
823 | 825 | 5.105146 | AGGCAAATCCGGATCTCTATATGTC | 60.105 | 44.000 | 19.43 | 9.73 | 40.77 | 3.06 |
824 | 826 | 4.780021 | AGGCAAATCCGGATCTCTATATGT | 59.220 | 41.667 | 19.43 | 0.00 | 40.77 | 2.29 |
825 | 827 | 5.350504 | AGGCAAATCCGGATCTCTATATG | 57.649 | 43.478 | 19.43 | 9.34 | 40.77 | 1.78 |
826 | 828 | 6.436027 | TCTAGGCAAATCCGGATCTCTATAT | 58.564 | 40.000 | 19.43 | 0.00 | 40.77 | 0.86 |
827 | 829 | 5.827756 | TCTAGGCAAATCCGGATCTCTATA | 58.172 | 41.667 | 19.43 | 7.83 | 40.77 | 1.31 |
828 | 830 | 4.678256 | TCTAGGCAAATCCGGATCTCTAT | 58.322 | 43.478 | 19.43 | 7.03 | 40.77 | 1.98 |
829 | 831 | 4.114015 | TCTAGGCAAATCCGGATCTCTA | 57.886 | 45.455 | 19.43 | 14.81 | 40.77 | 2.43 |
830 | 832 | 2.964209 | TCTAGGCAAATCCGGATCTCT | 58.036 | 47.619 | 19.43 | 14.48 | 40.77 | 3.10 |
831 | 833 | 3.594134 | CATCTAGGCAAATCCGGATCTC | 58.406 | 50.000 | 19.43 | 9.59 | 40.77 | 2.75 |
832 | 834 | 2.289945 | GCATCTAGGCAAATCCGGATCT | 60.290 | 50.000 | 19.43 | 12.97 | 40.77 | 2.75 |
833 | 835 | 2.079925 | GCATCTAGGCAAATCCGGATC | 58.920 | 52.381 | 19.43 | 5.10 | 40.77 | 3.36 |
834 | 836 | 1.701847 | AGCATCTAGGCAAATCCGGAT | 59.298 | 47.619 | 12.38 | 12.38 | 40.77 | 4.18 |
835 | 837 | 1.070758 | GAGCATCTAGGCAAATCCGGA | 59.929 | 52.381 | 6.61 | 6.61 | 40.77 | 5.14 |
836 | 838 | 1.517242 | GAGCATCTAGGCAAATCCGG | 58.483 | 55.000 | 0.00 | 0.00 | 40.77 | 5.14 |
849 | 851 | 3.618594 | TCAAACGCTGTGATAAGAGCATC | 59.381 | 43.478 | 0.00 | 0.00 | 34.69 | 3.91 |
850 | 852 | 3.372206 | GTCAAACGCTGTGATAAGAGCAT | 59.628 | 43.478 | 0.00 | 0.00 | 34.69 | 3.79 |
851 | 853 | 2.736721 | GTCAAACGCTGTGATAAGAGCA | 59.263 | 45.455 | 0.00 | 0.00 | 34.69 | 4.26 |
852 | 854 | 2.222596 | CGTCAAACGCTGTGATAAGAGC | 60.223 | 50.000 | 0.00 | 0.00 | 33.65 | 4.09 |
853 | 855 | 2.345641 | CCGTCAAACGCTGTGATAAGAG | 59.654 | 50.000 | 0.00 | 0.00 | 40.91 | 2.85 |
854 | 856 | 2.333926 | CCGTCAAACGCTGTGATAAGA | 58.666 | 47.619 | 0.00 | 0.00 | 40.91 | 2.10 |
855 | 857 | 1.201921 | GCCGTCAAACGCTGTGATAAG | 60.202 | 52.381 | 0.00 | 0.00 | 40.91 | 1.73 |
856 | 858 | 0.793861 | GCCGTCAAACGCTGTGATAA | 59.206 | 50.000 | 0.00 | 0.00 | 40.91 | 1.75 |
857 | 859 | 1.017177 | GGCCGTCAAACGCTGTGATA | 61.017 | 55.000 | 0.00 | 0.00 | 40.91 | 2.15 |
858 | 860 | 2.325082 | GGCCGTCAAACGCTGTGAT | 61.325 | 57.895 | 0.00 | 0.00 | 40.91 | 3.06 |
859 | 861 | 2.970324 | GGCCGTCAAACGCTGTGA | 60.970 | 61.111 | 0.00 | 0.00 | 40.91 | 3.58 |
860 | 862 | 2.513065 | GATGGCCGTCAAACGCTGTG | 62.513 | 60.000 | 20.55 | 0.00 | 40.91 | 3.66 |
861 | 863 | 2.281484 | ATGGCCGTCAAACGCTGT | 60.281 | 55.556 | 0.00 | 0.00 | 40.91 | 4.40 |
862 | 864 | 2.480555 | GATGGCCGTCAAACGCTG | 59.519 | 61.111 | 20.55 | 0.00 | 40.91 | 5.18 |
863 | 865 | 3.118454 | CGATGGCCGTCAAACGCT | 61.118 | 61.111 | 24.56 | 0.00 | 40.91 | 5.07 |
864 | 866 | 3.083600 | CTCGATGGCCGTCAAACGC | 62.084 | 63.158 | 24.56 | 0.00 | 40.91 | 4.84 |
865 | 867 | 0.806102 | ATCTCGATGGCCGTCAAACG | 60.806 | 55.000 | 24.56 | 11.45 | 42.11 | 3.60 |
866 | 868 | 1.859080 | GTATCTCGATGGCCGTCAAAC | 59.141 | 52.381 | 24.56 | 10.42 | 39.75 | 2.93 |
867 | 869 | 1.535226 | CGTATCTCGATGGCCGTCAAA | 60.535 | 52.381 | 24.56 | 10.98 | 42.86 | 2.69 |
868 | 870 | 0.030235 | CGTATCTCGATGGCCGTCAA | 59.970 | 55.000 | 24.56 | 5.45 | 42.86 | 3.18 |
869 | 871 | 1.652563 | CGTATCTCGATGGCCGTCA | 59.347 | 57.895 | 24.56 | 10.82 | 42.86 | 4.35 |
870 | 872 | 1.729838 | GCGTATCTCGATGGCCGTC | 60.730 | 63.158 | 15.54 | 15.54 | 42.86 | 4.79 |
871 | 873 | 2.011741 | TTGCGTATCTCGATGGCCGT | 62.012 | 55.000 | 0.00 | 0.00 | 42.86 | 5.68 |
872 | 874 | 1.278172 | CTTGCGTATCTCGATGGCCG | 61.278 | 60.000 | 0.00 | 0.00 | 42.86 | 6.13 |
873 | 875 | 0.946221 | CCTTGCGTATCTCGATGGCC | 60.946 | 60.000 | 0.00 | 0.00 | 42.86 | 5.36 |
874 | 876 | 0.946221 | CCCTTGCGTATCTCGATGGC | 60.946 | 60.000 | 0.00 | 0.00 | 42.86 | 4.40 |
875 | 877 | 0.673985 | TCCCTTGCGTATCTCGATGG | 59.326 | 55.000 | 0.00 | 0.00 | 42.86 | 3.51 |
876 | 878 | 2.732412 | ATCCCTTGCGTATCTCGATG | 57.268 | 50.000 | 0.00 | 0.00 | 42.86 | 3.84 |
877 | 879 | 2.028930 | GGAATCCCTTGCGTATCTCGAT | 60.029 | 50.000 | 0.00 | 0.00 | 42.86 | 3.59 |
878 | 880 | 1.340248 | GGAATCCCTTGCGTATCTCGA | 59.660 | 52.381 | 0.00 | 0.00 | 42.86 | 4.04 |
879 | 881 | 1.784525 | GGAATCCCTTGCGTATCTCG | 58.215 | 55.000 | 0.00 | 0.00 | 43.12 | 4.04 |
880 | 882 | 1.340248 | TCGGAATCCCTTGCGTATCTC | 59.660 | 52.381 | 0.00 | 0.00 | 45.28 | 2.75 |
881 | 883 | 1.410004 | TCGGAATCCCTTGCGTATCT | 58.590 | 50.000 | 0.00 | 0.00 | 45.28 | 1.98 |
882 | 884 | 2.069273 | CATCGGAATCCCTTGCGTATC | 58.931 | 52.381 | 0.00 | 0.00 | 45.28 | 2.24 |
883 | 885 | 1.878102 | GCATCGGAATCCCTTGCGTAT | 60.878 | 52.381 | 5.51 | 0.00 | 45.28 | 3.06 |
884 | 886 | 0.531974 | GCATCGGAATCCCTTGCGTA | 60.532 | 55.000 | 5.51 | 0.00 | 45.28 | 4.42 |
885 | 887 | 1.819632 | GCATCGGAATCCCTTGCGT | 60.820 | 57.895 | 5.51 | 0.00 | 45.28 | 5.24 |
886 | 888 | 1.097547 | AAGCATCGGAATCCCTTGCG | 61.098 | 55.000 | 13.31 | 0.00 | 46.29 | 4.85 |
887 | 889 | 0.383231 | CAAGCATCGGAATCCCTTGC | 59.617 | 55.000 | 11.79 | 11.79 | 38.66 | 4.01 |
888 | 890 | 0.383231 | GCAAGCATCGGAATCCCTTG | 59.617 | 55.000 | 10.42 | 10.42 | 36.78 | 3.61 |
889 | 891 | 0.753111 | GGCAAGCATCGGAATCCCTT | 60.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
890 | 892 | 1.152881 | GGCAAGCATCGGAATCCCT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
891 | 893 | 1.450531 | CTGGCAAGCATCGGAATCCC | 61.451 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
892 | 894 | 0.464373 | TCTGGCAAGCATCGGAATCC | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
893 | 895 | 1.382522 | TTCTGGCAAGCATCGGAATC | 58.617 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
894 | 896 | 1.838112 | TTTCTGGCAAGCATCGGAAT | 58.162 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
895 | 897 | 1.614996 | TTTTCTGGCAAGCATCGGAA | 58.385 | 45.000 | 0.00 | 0.00 | 0.00 | 4.30 |
896 | 898 | 1.838112 | ATTTTCTGGCAAGCATCGGA | 58.162 | 45.000 | 0.00 | 0.00 | 0.00 | 4.55 |
897 | 899 | 2.423185 | TGTATTTTCTGGCAAGCATCGG | 59.577 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
898 | 900 | 3.429085 | GTGTATTTTCTGGCAAGCATCG | 58.571 | 45.455 | 0.00 | 0.00 | 0.00 | 3.84 |
899 | 901 | 3.193267 | TGGTGTATTTTCTGGCAAGCATC | 59.807 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
900 | 902 | 3.164268 | TGGTGTATTTTCTGGCAAGCAT | 58.836 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
901 | 903 | 2.557924 | CTGGTGTATTTTCTGGCAAGCA | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
902 | 904 | 2.558359 | ACTGGTGTATTTTCTGGCAAGC | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
903 | 905 | 4.074970 | AGACTGGTGTATTTTCTGGCAAG | 58.925 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
904 | 906 | 4.098914 | AGACTGGTGTATTTTCTGGCAA | 57.901 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
905 | 907 | 3.788227 | AGACTGGTGTATTTTCTGGCA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 4.92 |
906 | 908 | 6.555315 | CAATAAGACTGGTGTATTTTCTGGC | 58.445 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
907 | 909 | 6.375455 | AGCAATAAGACTGGTGTATTTTCTGG | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
908 | 910 | 7.335422 | AGAGCAATAAGACTGGTGTATTTTCTG | 59.665 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
909 | 911 | 7.398024 | AGAGCAATAAGACTGGTGTATTTTCT | 58.602 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
910 | 912 | 7.334421 | TGAGAGCAATAAGACTGGTGTATTTTC | 59.666 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
950 | 952 | 2.047560 | GTGGTACGGGACTGGCAC | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
1308 | 1310 | 2.522193 | GGGGAGAGCTCGTAGGGG | 60.522 | 72.222 | 8.37 | 0.00 | 0.00 | 4.79 |
1362 | 1364 | 0.385348 | CGGAGCAGACGATCTCGATG | 60.385 | 60.000 | 6.60 | 5.98 | 43.02 | 3.84 |
1404 | 1406 | 1.003355 | CGGGAGCAGGATGTTGTGT | 60.003 | 57.895 | 0.00 | 0.00 | 39.31 | 3.72 |
1475 | 1477 | 1.726533 | GAGGAGGTCGAAGTAGCGGG | 61.727 | 65.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1644 | 1646 | 1.617018 | CGAGGCAGGAAGGATGGTGA | 61.617 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1645 | 1647 | 1.153289 | CGAGGCAGGAAGGATGGTG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
1646 | 1648 | 1.306141 | TCGAGGCAGGAAGGATGGT | 60.306 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
1668 | 1676 | 0.740868 | TCGGCAAAGCTGAAGATCGG | 60.741 | 55.000 | 0.00 | 0.00 | 41.31 | 4.18 |
1682 | 1690 | 2.280797 | GACCTGCAACAGTCGGCA | 60.281 | 61.111 | 0.00 | 0.40 | 38.52 | 5.69 |
1683 | 1691 | 3.414700 | CGACCTGCAACAGTCGGC | 61.415 | 66.667 | 20.18 | 0.00 | 34.25 | 5.54 |
1708 | 1716 | 1.451028 | GATGCCAAGCTTCCTCGCT | 60.451 | 57.895 | 0.00 | 0.00 | 43.31 | 4.93 |
1904 | 1912 | 2.091885 | AGAAAAGAACCTTGGTCCTGCA | 60.092 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
1936 | 1944 | 9.638239 | TCAGACAAAAATAAAACATCCTAATGC | 57.362 | 29.630 | 0.00 | 0.00 | 36.26 | 3.56 |
2039 | 2336 | 0.316204 | ATGCTTTCCACAAGCTGCAC | 59.684 | 50.000 | 1.02 | 0.00 | 43.38 | 4.57 |
2143 | 2440 | 9.507329 | TGGCTTTTATTATGTCTCCAGAATATC | 57.493 | 33.333 | 0.00 | 0.00 | 35.36 | 1.63 |
2218 | 2515 | 7.269316 | ACCAAAGGACAAAAACGTCATTTTAT | 58.731 | 30.769 | 1.36 | 0.00 | 44.88 | 1.40 |
2235 | 2532 | 2.270352 | ATTGCGTCAAGACCAAAGGA | 57.730 | 45.000 | 7.75 | 0.00 | 0.00 | 3.36 |
2240 | 2537 | 2.270352 | AGGAAATTGCGTCAAGACCA | 57.730 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2257 | 2561 | 1.228510 | GATTGCTCCCTGGGGAAGG | 59.771 | 63.158 | 14.00 | 2.36 | 44.66 | 3.46 |
2258 | 2562 | 1.228510 | GGATTGCTCCCTGGGGAAG | 59.771 | 63.158 | 14.00 | 4.84 | 44.66 | 3.46 |
2284 | 2588 | 1.949525 | TCTTGCTTTGTGTTCTCCAGC | 59.050 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
2335 | 2639 | 2.095567 | CCAGCATATATCTGCGGTTTGC | 60.096 | 50.000 | 11.24 | 0.00 | 46.86 | 3.68 |
2446 | 2750 | 3.770263 | AACCATTCGCATGATGTCTTG | 57.230 | 42.857 | 0.00 | 0.00 | 31.07 | 3.02 |
2461 | 2765 | 2.318908 | ACACCATCAGCAACAAACCAT | 58.681 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
2462 | 2766 | 1.774110 | ACACCATCAGCAACAAACCA | 58.226 | 45.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2464 | 2768 | 4.764679 | TCATACACCATCAGCAACAAAC | 57.235 | 40.909 | 0.00 | 0.00 | 0.00 | 2.93 |
2465 | 2769 | 5.781210 | TTTCATACACCATCAGCAACAAA | 57.219 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
2467 | 2771 | 5.781210 | TTTTTCATACACCATCAGCAACA | 57.219 | 34.783 | 0.00 | 0.00 | 0.00 | 3.33 |
2468 | 2772 | 7.656707 | AAATTTTTCATACACCATCAGCAAC | 57.343 | 32.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2501 | 2806 | 3.360867 | TCCAGTTTCACCTGCAGAAAAA | 58.639 | 40.909 | 17.39 | 9.51 | 36.80 | 1.94 |
2502 | 2807 | 3.011566 | TCCAGTTTCACCTGCAGAAAA | 57.988 | 42.857 | 17.39 | 9.88 | 36.80 | 2.29 |
2609 | 2914 | 7.058023 | TGAGTTTTAGGCTCAAACTGTAGTA | 57.942 | 36.000 | 26.66 | 8.83 | 43.16 | 1.82 |
2611 | 2916 | 7.301054 | CAATGAGTTTTAGGCTCAAACTGTAG | 58.699 | 38.462 | 26.66 | 12.63 | 43.16 | 2.74 |
2622 | 2934 | 4.096984 | ACAGCTATGCAATGAGTTTTAGGC | 59.903 | 41.667 | 0.00 | 0.00 | 0.00 | 3.93 |
2628 | 2940 | 3.077484 | ACCACAGCTATGCAATGAGTT | 57.923 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
2630 | 2942 | 3.534554 | TGTACCACAGCTATGCAATGAG | 58.465 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2631 | 2943 | 3.534554 | CTGTACCACAGCTATGCAATGA | 58.465 | 45.455 | 0.00 | 0.00 | 39.62 | 2.57 |
2632 | 2944 | 2.615447 | CCTGTACCACAGCTATGCAATG | 59.385 | 50.000 | 0.00 | 0.00 | 44.63 | 2.82 |
2633 | 2945 | 2.505407 | TCCTGTACCACAGCTATGCAAT | 59.495 | 45.455 | 0.00 | 0.00 | 44.63 | 3.56 |
2634 | 2946 | 1.905894 | TCCTGTACCACAGCTATGCAA | 59.094 | 47.619 | 0.00 | 0.00 | 44.63 | 4.08 |
2635 | 2947 | 1.567357 | TCCTGTACCACAGCTATGCA | 58.433 | 50.000 | 0.64 | 0.00 | 44.63 | 3.96 |
2636 | 2948 | 2.918712 | ATCCTGTACCACAGCTATGC | 57.081 | 50.000 | 0.64 | 0.00 | 44.63 | 3.14 |
2637 | 2949 | 7.807977 | AAATAAATCCTGTACCACAGCTATG | 57.192 | 36.000 | 0.64 | 0.00 | 44.63 | 2.23 |
2638 | 2950 | 8.823220 | AAAAATAAATCCTGTACCACAGCTAT | 57.177 | 30.769 | 0.64 | 0.00 | 44.63 | 2.97 |
2666 | 2978 | 5.717078 | ATGATTGCTGAAGAAAGAAAGCA | 57.283 | 34.783 | 0.00 | 0.00 | 43.60 | 3.91 |
2667 | 2979 | 5.742926 | GCTATGATTGCTGAAGAAAGAAAGC | 59.257 | 40.000 | 0.00 | 0.00 | 36.18 | 3.51 |
2668 | 2980 | 7.086230 | AGCTATGATTGCTGAAGAAAGAAAG | 57.914 | 36.000 | 0.00 | 0.00 | 39.56 | 2.62 |
2680 | 2992 | 3.801698 | CTGTACCACAGCTATGATTGCT | 58.198 | 45.455 | 0.00 | 0.00 | 39.62 | 3.91 |
2691 | 3003 | 7.782337 | GAGTTTTATGCTCAAACTGTACCACAG | 60.782 | 40.741 | 11.64 | 4.79 | 43.16 | 3.66 |
2692 | 3004 | 5.825679 | AGTTTTATGCTCAAACTGTACCACA | 59.174 | 36.000 | 7.44 | 0.00 | 41.86 | 4.17 |
2693 | 3005 | 6.313744 | AGTTTTATGCTCAAACTGTACCAC | 57.686 | 37.500 | 7.44 | 0.00 | 41.86 | 4.16 |
2694 | 3006 | 5.178623 | CGAGTTTTATGCTCAAACTGTACCA | 59.821 | 40.000 | 11.64 | 0.00 | 43.16 | 3.25 |
2695 | 3007 | 5.407387 | TCGAGTTTTATGCTCAAACTGTACC | 59.593 | 40.000 | 11.64 | 0.24 | 43.16 | 3.34 |
2696 | 3008 | 6.462073 | TCGAGTTTTATGCTCAAACTGTAC | 57.538 | 37.500 | 11.64 | 0.00 | 43.16 | 2.90 |
2697 | 3009 | 5.120208 | GCTCGAGTTTTATGCTCAAACTGTA | 59.880 | 40.000 | 15.13 | 1.97 | 43.16 | 2.74 |
2698 | 3010 | 4.083802 | GCTCGAGTTTTATGCTCAAACTGT | 60.084 | 41.667 | 15.13 | 0.00 | 43.16 | 3.55 |
2699 | 3011 | 4.153117 | AGCTCGAGTTTTATGCTCAAACTG | 59.847 | 41.667 | 15.13 | 6.31 | 43.16 | 3.16 |
2700 | 3012 | 4.319177 | AGCTCGAGTTTTATGCTCAAACT | 58.681 | 39.130 | 15.13 | 7.84 | 45.28 | 2.66 |
2701 | 3013 | 4.642953 | GAGCTCGAGTTTTATGCTCAAAC | 58.357 | 43.478 | 15.13 | 0.00 | 46.41 | 2.93 |
2702 | 3014 | 4.928661 | GAGCTCGAGTTTTATGCTCAAA | 57.071 | 40.909 | 15.13 | 0.00 | 46.41 | 2.69 |
2706 | 3018 | 3.064545 | GCAATGAGCTCGAGTTTTATGCT | 59.935 | 43.478 | 15.13 | 3.18 | 41.15 | 3.79 |
2707 | 3019 | 3.181507 | TGCAATGAGCTCGAGTTTTATGC | 60.182 | 43.478 | 15.13 | 18.00 | 45.94 | 3.14 |
2708 | 3020 | 4.604843 | TGCAATGAGCTCGAGTTTTATG | 57.395 | 40.909 | 15.13 | 9.18 | 45.94 | 1.90 |
2709 | 3021 | 6.933521 | AGATATGCAATGAGCTCGAGTTTTAT | 59.066 | 34.615 | 15.13 | 4.30 | 45.94 | 1.40 |
2710 | 3022 | 6.201615 | CAGATATGCAATGAGCTCGAGTTTTA | 59.798 | 38.462 | 15.13 | 1.86 | 45.94 | 1.52 |
2711 | 3023 | 5.007430 | CAGATATGCAATGAGCTCGAGTTTT | 59.993 | 40.000 | 15.13 | 0.00 | 45.94 | 2.43 |
2712 | 3024 | 4.510711 | CAGATATGCAATGAGCTCGAGTTT | 59.489 | 41.667 | 15.13 | 2.46 | 45.94 | 2.66 |
2713 | 3025 | 4.056740 | CAGATATGCAATGAGCTCGAGTT | 58.943 | 43.478 | 15.13 | 8.18 | 45.94 | 3.01 |
2714 | 3026 | 3.069300 | ACAGATATGCAATGAGCTCGAGT | 59.931 | 43.478 | 15.13 | 0.23 | 45.94 | 4.18 |
2715 | 3027 | 3.429207 | CACAGATATGCAATGAGCTCGAG | 59.571 | 47.826 | 8.45 | 8.45 | 45.94 | 4.04 |
2716 | 3028 | 3.387397 | CACAGATATGCAATGAGCTCGA | 58.613 | 45.455 | 9.64 | 0.00 | 45.94 | 4.04 |
2717 | 3029 | 2.479275 | CCACAGATATGCAATGAGCTCG | 59.521 | 50.000 | 9.64 | 0.00 | 45.94 | 5.03 |
2718 | 3030 | 3.474600 | ACCACAGATATGCAATGAGCTC | 58.525 | 45.455 | 6.82 | 6.82 | 45.94 | 4.09 |
2719 | 3031 | 3.572632 | ACCACAGATATGCAATGAGCT | 57.427 | 42.857 | 0.00 | 0.00 | 45.94 | 4.09 |
2720 | 3032 | 4.129380 | TGTACCACAGATATGCAATGAGC | 58.871 | 43.478 | 0.00 | 0.00 | 45.96 | 4.26 |
2721 | 3033 | 5.993441 | TCATGTACCACAGATATGCAATGAG | 59.007 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2722 | 3034 | 5.927819 | TCATGTACCACAGATATGCAATGA | 58.072 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2723 | 3035 | 6.812879 | ATCATGTACCACAGATATGCAATG | 57.187 | 37.500 | 0.00 | 0.00 | 0.00 | 2.82 |
2724 | 3036 | 7.828508 | AAATCATGTACCACAGATATGCAAT | 57.171 | 32.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2725 | 3037 | 7.643569 | AAAATCATGTACCACAGATATGCAA | 57.356 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2726 | 3038 | 7.643569 | AAAAATCATGTACCACAGATATGCA | 57.356 | 32.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2776 | 3088 | 7.779798 | TGCTAGAATAAAATGCCAATAGAAGGT | 59.220 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
2899 | 3213 | 1.830477 | AGCAGAAGGACTTGAGCCTAG | 59.170 | 52.381 | 0.00 | 0.00 | 33.76 | 3.02 |
2900 | 3214 | 1.827969 | GAGCAGAAGGACTTGAGCCTA | 59.172 | 52.381 | 0.00 | 0.00 | 33.76 | 3.93 |
2939 | 3253 | 2.693074 | TGTGAGCTCACTGTGTCACTTA | 59.307 | 45.455 | 38.81 | 18.18 | 46.55 | 2.24 |
2946 | 3260 | 1.869767 | GGAACTTGTGAGCTCACTGTG | 59.130 | 52.381 | 38.81 | 29.99 | 46.55 | 3.66 |
2972 | 3286 | 1.203100 | AGGAAAGCAGGTGCCTCATTT | 60.203 | 47.619 | 0.00 | 0.00 | 43.38 | 2.32 |
2973 | 3287 | 0.407139 | AGGAAAGCAGGTGCCTCATT | 59.593 | 50.000 | 0.00 | 0.00 | 43.38 | 2.57 |
3137 | 3459 | 6.530120 | ACAATTGTCACCTACACATACTTGA | 58.470 | 36.000 | 4.92 | 0.00 | 38.00 | 3.02 |
3241 | 3563 | 1.974236 | AGCTCCCGATCCTATCCTTTG | 59.026 | 52.381 | 0.00 | 0.00 | 0.00 | 2.77 |
3243 | 3565 | 3.544698 | TTAGCTCCCGATCCTATCCTT | 57.455 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
3256 | 3578 | 2.039818 | GGCACCTAAGGTTTAGCTCC | 57.960 | 55.000 | 0.00 | 0.00 | 31.02 | 4.70 |
3276 | 3598 | 4.508124 | ACACTAACAAGCAAAACTCTCTCG | 59.492 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
3277 | 3599 | 5.993106 | ACACTAACAAGCAAAACTCTCTC | 57.007 | 39.130 | 0.00 | 0.00 | 0.00 | 3.20 |
3278 | 3600 | 6.599638 | AGAAACACTAACAAGCAAAACTCTCT | 59.400 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
3279 | 3601 | 6.786207 | AGAAACACTAACAAGCAAAACTCTC | 58.214 | 36.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3280 | 3602 | 6.759497 | AGAAACACTAACAAGCAAAACTCT | 57.241 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
3287 | 3609 | 4.702612 | TGGACAAAGAAACACTAACAAGCA | 59.297 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
3361 | 3683 | 0.602372 | GCGCTCATCAGGGATTCCTC | 60.602 | 60.000 | 0.00 | 0.00 | 42.67 | 3.71 |
3362 | 3684 | 1.053264 | AGCGCTCATCAGGGATTCCT | 61.053 | 55.000 | 2.64 | 0.00 | 46.26 | 3.36 |
3380 | 3702 | 5.120363 | GGAAAGAAAAGCTACGGTACTTCAG | 59.880 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3391 | 3713 | 1.674817 | CCGCCGAGGAAAGAAAAGCTA | 60.675 | 52.381 | 0.00 | 0.00 | 45.00 | 3.32 |
3394 | 3716 | 1.234615 | TGCCGCCGAGGAAAGAAAAG | 61.235 | 55.000 | 0.91 | 0.00 | 45.00 | 2.27 |
3430 | 3761 | 8.974060 | ACTAGAACAAGAAAACTACCATGAAA | 57.026 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
3435 | 3766 | 6.877322 | GCCATACTAGAACAAGAAAACTACCA | 59.123 | 38.462 | 0.00 | 0.00 | 0.00 | 3.25 |
3442 | 3773 | 6.296026 | ACAACTGCCATACTAGAACAAGAAA | 58.704 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3480 | 4035 | 8.588472 | ACTAAAATACCGTAACTTTCCAGTACT | 58.412 | 33.333 | 0.00 | 0.00 | 30.68 | 2.73 |
3504 | 4059 | 0.959372 | AGACGTCGATTCCGGTGACT | 60.959 | 55.000 | 10.46 | 0.00 | 36.24 | 3.41 |
3532 | 4087 | 2.363306 | AGGCCAGACAACAAACATCA | 57.637 | 45.000 | 5.01 | 0.00 | 0.00 | 3.07 |
3576 | 4131 | 2.092429 | ACACTTGACCACCACAGTCATT | 60.092 | 45.455 | 0.00 | 0.00 | 43.46 | 2.57 |
3604 | 4159 | 8.940397 | AAATTCAAAATTAGAGGACCTCTGAA | 57.060 | 30.769 | 30.88 | 24.04 | 41.37 | 3.02 |
3610 | 4165 | 7.946381 | AGAGGAAATTCAAAATTAGAGGACC | 57.054 | 36.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3631 | 4186 | 7.713073 | AGAAACTAGGAGAAACAACAAGAAGAG | 59.287 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
3694 | 4249 | 5.883115 | TGAATATTCCATTGCGAACCAAGTA | 59.117 | 36.000 | 12.90 | 0.00 | 36.76 | 2.24 |
3789 | 4344 | 6.464834 | CGAACAAACTATCACGAAAATAAGCC | 59.535 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
3794 | 4349 | 7.359262 | TCATCGAACAAACTATCACGAAAAT | 57.641 | 32.000 | 0.00 | 0.00 | 33.77 | 1.82 |
3861 | 4416 | 7.754069 | TTACAAAGAAAGAGCAAACACATTG | 57.246 | 32.000 | 0.00 | 0.00 | 42.21 | 2.82 |
3907 | 4462 | 5.652994 | TGTAGTTTTGTATGGGGAATTGC | 57.347 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.