Multiple sequence alignment - TraesCS1A01G070500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G070500 chr1A 100.000 3946 0 0 1 3946 53435322 53439267 0.000000e+00 7287.0
1 TraesCS1A01G070500 chr1D 93.123 1207 71 5 2748 3946 53870373 53871575 0.000000e+00 1759.0
2 TraesCS1A01G070500 chr1D 96.338 1065 32 4 912 1969 53868372 53869436 0.000000e+00 1744.0
3 TraesCS1A01G070500 chr1D 93.395 651 30 11 1974 2622 53869706 53870345 0.000000e+00 952.0
4 TraesCS1A01G070500 chr1D 95.390 564 26 0 218 781 418519739 418520302 0.000000e+00 898.0
5 TraesCS1A01G070500 chr1B 96.223 1059 36 4 912 1969 87970226 87971281 0.000000e+00 1731.0
6 TraesCS1A01G070500 chr1B 95.390 564 26 0 218 781 57805585 57805022 0.000000e+00 898.0
7 TraesCS1A01G070500 chr1B 91.975 648 36 8 1972 2609 87971563 87972204 0.000000e+00 894.0
8 TraesCS1A01G070500 chr1B 95.044 565 28 0 218 782 30713859 30713295 0.000000e+00 889.0
9 TraesCS1A01G070500 chr1B 86.160 737 45 23 2740 3454 87972240 87972941 0.000000e+00 743.0
10 TraesCS1A01G070500 chr1B 86.068 323 44 1 3451 3772 87973161 87973483 2.920000e-91 346.0
11 TraesCS1A01G070500 chr4A 97.509 562 14 0 218 779 94978856 94978295 0.000000e+00 961.0
12 TraesCS1A01G070500 chr4A 96.751 554 18 0 226 779 601217463 601218016 0.000000e+00 924.0
13 TraesCS1A01G070500 chr4A 95.213 564 27 0 218 781 661815785 661815222 0.000000e+00 893.0
14 TraesCS1A01G070500 chr4A 95.221 565 24 3 218 781 733340318 733340880 0.000000e+00 891.0
15 TraesCS1A01G070500 chr4A 84.733 131 18 2 1 130 625861103 625860974 3.200000e-26 130.0
16 TraesCS1A01G070500 chr4A 83.721 129 20 1 5 132 7738188 7738316 1.930000e-23 121.0
17 TraesCS1A01G070500 chr7D 95.221 565 26 1 218 782 65716260 65716823 0.000000e+00 893.0
18 TraesCS1A01G070500 chr2B 95.204 563 26 1 218 780 95792899 95792338 0.000000e+00 889.0
19 TraesCS1A01G070500 chr2B 87.387 111 14 0 22 132 472909730 472909620 1.150000e-25 128.0
20 TraesCS1A01G070500 chr2B 84.496 129 18 2 4 132 560893510 560893384 4.140000e-25 126.0
21 TraesCS1A01G070500 chr3A 89.091 110 12 0 1 110 641865652 641865761 1.910000e-28 137.0
22 TraesCS1A01G070500 chr3A 85.938 128 17 1 6 133 625536874 625536748 6.880000e-28 135.0
23 TraesCS1A01G070500 chr2D 85.124 121 14 3 22 140 340269467 340269585 1.930000e-23 121.0
24 TraesCS1A01G070500 chr2D 97.619 42 1 0 182 223 484491004 484490963 5.470000e-09 73.1
25 TraesCS1A01G070500 chr6D 83.594 128 20 1 5 132 454249128 454249002 6.930000e-23 119.0
26 TraesCS1A01G070500 chr5D 84.553 123 16 2 1 120 35289973 35290095 6.930000e-23 119.0
27 TraesCS1A01G070500 chr3B 100.000 42 0 0 182 223 21383388 21383429 1.180000e-10 78.7
28 TraesCS1A01G070500 chr7A 97.619 42 1 0 183 224 734078357 734078316 5.470000e-09 73.1
29 TraesCS1A01G070500 chr4D 97.619 42 1 0 182 223 487283578 487283537 5.470000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G070500 chr1A 53435322 53439267 3945 False 7287.0 7287 100.000000 1 3946 1 chr1A.!!$F1 3945
1 TraesCS1A01G070500 chr1D 53868372 53871575 3203 False 1485.0 1759 94.285333 912 3946 3 chr1D.!!$F2 3034
2 TraesCS1A01G070500 chr1D 418519739 418520302 563 False 898.0 898 95.390000 218 781 1 chr1D.!!$F1 563
3 TraesCS1A01G070500 chr1B 87970226 87973483 3257 False 928.5 1731 90.106500 912 3772 4 chr1B.!!$F1 2860
4 TraesCS1A01G070500 chr1B 57805022 57805585 563 True 898.0 898 95.390000 218 781 1 chr1B.!!$R2 563
5 TraesCS1A01G070500 chr1B 30713295 30713859 564 True 889.0 889 95.044000 218 782 1 chr1B.!!$R1 564
6 TraesCS1A01G070500 chr4A 94978295 94978856 561 True 961.0 961 97.509000 218 779 1 chr4A.!!$R1 561
7 TraesCS1A01G070500 chr4A 601217463 601218016 553 False 924.0 924 96.751000 226 779 1 chr4A.!!$F2 553
8 TraesCS1A01G070500 chr4A 661815222 661815785 563 True 893.0 893 95.213000 218 781 1 chr4A.!!$R3 563
9 TraesCS1A01G070500 chr4A 733340318 733340880 562 False 891.0 891 95.221000 218 781 1 chr4A.!!$F3 563
10 TraesCS1A01G070500 chr7D 65716260 65716823 563 False 893.0 893 95.221000 218 782 1 chr7D.!!$F1 564
11 TraesCS1A01G070500 chr2B 95792338 95792899 561 True 889.0 889 95.204000 218 780 1 chr2B.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 889 0.030235 TTGACGGCCATCGAGATACG 59.970 55.0 2.24 0.0 42.43 3.06 F
1004 1006 0.251121 ATGTCCAACGGCACCATGAA 60.251 50.0 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2336 0.316204 ATGCTTTCCACAAGCTGCAC 59.684 50.0 1.02 0.0 43.38 4.57 R
2973 3287 0.407139 AGGAAAGCAGGTGCCTCATT 59.593 50.0 0.00 0.0 43.38 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.673626 AAAGATTTCAATACAAACTGCATACG 57.326 30.769 0.00 0.00 0.00 3.06
27 28 6.785191 AGATTTCAATACAAACTGCATACGG 58.215 36.000 0.00 0.00 0.00 4.02
28 29 6.597672 AGATTTCAATACAAACTGCATACGGA 59.402 34.615 0.00 0.00 0.00 4.69
29 30 6.751514 TTTCAATACAAACTGCATACGGAT 57.248 33.333 0.00 0.00 0.00 4.18
30 31 5.984233 TCAATACAAACTGCATACGGATC 57.016 39.130 0.00 0.00 0.00 3.36
31 32 5.670485 TCAATACAAACTGCATACGGATCT 58.330 37.500 0.00 0.00 0.00 2.75
32 33 6.811954 TCAATACAAACTGCATACGGATCTA 58.188 36.000 0.00 0.00 0.00 1.98
33 34 7.441836 TCAATACAAACTGCATACGGATCTAT 58.558 34.615 0.00 0.00 0.00 1.98
34 35 8.581578 TCAATACAAACTGCATACGGATCTATA 58.418 33.333 0.00 0.00 0.00 1.31
35 36 9.371136 CAATACAAACTGCATACGGATCTATAT 57.629 33.333 0.00 0.00 0.00 0.86
38 39 8.349568 ACAAACTGCATACGGATCTATATAGA 57.650 34.615 14.76 14.76 36.65 1.98
39 40 8.244802 ACAAACTGCATACGGATCTATATAGAC 58.755 37.037 14.71 8.77 34.72 2.59
40 41 7.939784 AACTGCATACGGATCTATATAGACA 57.060 36.000 14.71 5.14 34.72 3.41
41 42 8.526667 AACTGCATACGGATCTATATAGACAT 57.473 34.615 14.71 0.00 34.72 3.06
42 43 9.628500 AACTGCATACGGATCTATATAGACATA 57.372 33.333 14.71 5.75 34.72 2.29
43 44 9.800572 ACTGCATACGGATCTATATAGACATAT 57.199 33.333 14.71 7.59 34.72 1.78
70 71 8.986477 ATAAAATGTAGGTTCACTCATTTTGC 57.014 30.769 18.54 0.00 41.50 3.68
71 72 6.655078 AAATGTAGGTTCACTCATTTTGCT 57.345 33.333 0.00 0.00 35.40 3.91
72 73 6.655078 AATGTAGGTTCACTCATTTTGCTT 57.345 33.333 0.00 0.00 0.00 3.91
73 74 5.689383 TGTAGGTTCACTCATTTTGCTTC 57.311 39.130 0.00 0.00 0.00 3.86
74 75 3.904136 AGGTTCACTCATTTTGCTTCG 57.096 42.857 0.00 0.00 0.00 3.79
75 76 3.214328 AGGTTCACTCATTTTGCTTCGT 58.786 40.909 0.00 0.00 0.00 3.85
76 77 4.385825 AGGTTCACTCATTTTGCTTCGTA 58.614 39.130 0.00 0.00 0.00 3.43
77 78 5.003804 AGGTTCACTCATTTTGCTTCGTAT 58.996 37.500 0.00 0.00 0.00 3.06
78 79 6.170506 AGGTTCACTCATTTTGCTTCGTATA 58.829 36.000 0.00 0.00 0.00 1.47
79 80 6.823689 AGGTTCACTCATTTTGCTTCGTATAT 59.176 34.615 0.00 0.00 0.00 0.86
80 81 6.907212 GGTTCACTCATTTTGCTTCGTATATG 59.093 38.462 0.00 0.00 0.00 1.78
81 82 7.201609 GGTTCACTCATTTTGCTTCGTATATGA 60.202 37.037 0.00 0.00 0.00 2.15
82 83 8.338259 GTTCACTCATTTTGCTTCGTATATGAT 58.662 33.333 0.00 0.00 0.00 2.45
83 84 8.076714 TCACTCATTTTGCTTCGTATATGATC 57.923 34.615 0.00 0.00 0.00 2.92
84 85 7.928167 TCACTCATTTTGCTTCGTATATGATCT 59.072 33.333 0.00 0.00 0.00 2.75
85 86 8.554528 CACTCATTTTGCTTCGTATATGATCTT 58.445 33.333 0.00 0.00 0.00 2.40
86 87 9.113838 ACTCATTTTGCTTCGTATATGATCTTT 57.886 29.630 0.00 0.00 0.00 2.52
87 88 9.941664 CTCATTTTGCTTCGTATATGATCTTTT 57.058 29.630 0.00 0.00 0.00 2.27
128 129 9.807921 AAAGACTTGTATTTAGAAATGAAGGGA 57.192 29.630 10.77 0.00 0.00 4.20
129 130 9.454859 AAGACTTGTATTTAGAAATGAAGGGAG 57.545 33.333 10.77 0.00 0.00 4.30
130 131 8.606830 AGACTTGTATTTAGAAATGAAGGGAGT 58.393 33.333 10.77 0.00 0.00 3.85
131 132 9.886132 GACTTGTATTTAGAAATGAAGGGAGTA 57.114 33.333 10.77 0.00 0.00 2.59
191 192 4.879197 AAAATTTGAGGCCTCTTTCCAG 57.121 40.909 32.28 0.00 0.00 3.86
192 193 1.844687 ATTTGAGGCCTCTTTCCAGC 58.155 50.000 32.28 5.53 0.00 4.85
196 197 2.436824 GGCCTCTTTCCAGCCGTC 60.437 66.667 0.00 0.00 36.84 4.79
197 198 2.815647 GCCTCTTTCCAGCCGTCG 60.816 66.667 0.00 0.00 0.00 5.12
198 199 2.815647 CCTCTTTCCAGCCGTCGC 60.816 66.667 0.00 0.00 0.00 5.19
199 200 2.815647 CTCTTTCCAGCCGTCGCC 60.816 66.667 0.00 0.00 34.57 5.54
200 201 3.302347 CTCTTTCCAGCCGTCGCCT 62.302 63.158 0.00 0.00 34.57 5.52
201 202 2.815647 CTTTCCAGCCGTCGCCTC 60.816 66.667 0.00 0.00 34.57 4.70
202 203 4.388499 TTTCCAGCCGTCGCCTCC 62.388 66.667 0.00 0.00 34.57 4.30
210 211 3.068691 CGTCGCCTCCTCCTCCAA 61.069 66.667 0.00 0.00 0.00 3.53
211 212 2.896443 GTCGCCTCCTCCTCCAAG 59.104 66.667 0.00 0.00 0.00 3.61
212 213 1.682684 GTCGCCTCCTCCTCCAAGA 60.683 63.158 0.00 0.00 0.00 3.02
213 214 1.078528 TCGCCTCCTCCTCCAAGAA 59.921 57.895 0.00 0.00 0.00 2.52
214 215 0.544357 TCGCCTCCTCCTCCAAGAAA 60.544 55.000 0.00 0.00 0.00 2.52
215 216 0.324943 CGCCTCCTCCTCCAAGAAAA 59.675 55.000 0.00 0.00 0.00 2.29
216 217 1.677217 CGCCTCCTCCTCCAAGAAAAG 60.677 57.143 0.00 0.00 0.00 2.27
229 230 1.298953 AGAAAAGCTAGGGCCATGGA 58.701 50.000 18.40 0.00 39.73 3.41
308 309 6.783708 TCAAGATTTGTTAGGGTTTGTGTT 57.216 33.333 0.00 0.00 0.00 3.32
474 475 1.876416 CGGATCTGGTTGTGGTTCGTT 60.876 52.381 0.00 0.00 0.00 3.85
564 565 2.364973 TGCGCTGGTCCTATGGGA 60.365 61.111 9.73 0.00 39.70 4.37
759 761 9.716531 CTGCCATAACAGAAGATGAATAGATTA 57.283 33.333 0.00 0.00 40.25 1.75
796 798 3.333029 AAAAATTTTGAGGCCCATCCG 57.667 42.857 3.73 0.00 40.77 4.18
797 799 1.194218 AAATTTTGAGGCCCATCCGG 58.806 50.000 0.00 0.00 40.77 5.14
798 800 0.041090 AATTTTGAGGCCCATCCGGT 59.959 50.000 0.00 0.00 40.77 5.28
799 801 0.395724 ATTTTGAGGCCCATCCGGTC 60.396 55.000 0.00 0.00 40.77 4.79
800 802 1.784301 TTTTGAGGCCCATCCGGTCA 61.784 55.000 0.00 0.00 39.53 4.02
801 803 2.478335 TTTGAGGCCCATCCGGTCAC 62.478 60.000 0.00 0.00 39.53 3.67
802 804 3.083997 GAGGCCCATCCGGTCACT 61.084 66.667 0.00 0.00 39.53 3.41
803 805 3.391665 GAGGCCCATCCGGTCACTG 62.392 68.421 0.00 0.00 39.53 3.66
804 806 3.717294 GGCCCATCCGGTCACTGT 61.717 66.667 0.00 0.00 35.67 3.55
805 807 2.125106 GCCCATCCGGTCACTGTC 60.125 66.667 0.00 0.00 0.00 3.51
806 808 2.184322 CCCATCCGGTCACTGTCG 59.816 66.667 0.00 0.00 0.00 4.35
807 809 2.646175 CCCATCCGGTCACTGTCGT 61.646 63.158 0.00 0.00 0.00 4.34
808 810 1.446099 CCATCCGGTCACTGTCGTG 60.446 63.158 0.00 0.00 42.59 4.35
809 811 1.446099 CATCCGGTCACTGTCGTGG 60.446 63.158 0.00 0.00 41.53 4.94
810 812 2.646175 ATCCGGTCACTGTCGTGGG 61.646 63.158 0.00 0.00 41.53 4.61
828 830 4.840288 CGCGCGTCCACGGACATA 62.840 66.667 24.19 0.00 44.77 2.29
829 831 2.279252 GCGCGTCCACGGACATAT 60.279 61.111 16.23 0.00 44.77 1.78
830 832 1.008194 GCGCGTCCACGGACATATA 60.008 57.895 16.23 0.00 44.77 0.86
831 833 1.002250 GCGCGTCCACGGACATATAG 61.002 60.000 16.23 0.77 44.77 1.31
832 834 0.589708 CGCGTCCACGGACATATAGA 59.410 55.000 16.23 0.00 44.77 1.98
833 835 1.399855 CGCGTCCACGGACATATAGAG 60.400 57.143 16.23 0.00 44.77 2.43
834 836 1.878088 GCGTCCACGGACATATAGAGA 59.122 52.381 16.23 0.00 44.77 3.10
835 837 2.488545 GCGTCCACGGACATATAGAGAT 59.511 50.000 16.23 0.00 44.77 2.75
836 838 3.426426 GCGTCCACGGACATATAGAGATC 60.426 52.174 16.23 0.00 44.77 2.75
837 839 3.127203 CGTCCACGGACATATAGAGATCC 59.873 52.174 16.23 0.00 44.77 3.36
845 847 5.112686 GGACATATAGAGATCCGGATTTGC 58.887 45.833 20.22 11.01 0.00 3.68
846 848 5.091261 ACATATAGAGATCCGGATTTGCC 57.909 43.478 20.22 5.48 0.00 4.52
847 849 4.780021 ACATATAGAGATCCGGATTTGCCT 59.220 41.667 20.22 11.00 0.00 4.75
848 850 5.958380 ACATATAGAGATCCGGATTTGCCTA 59.042 40.000 20.22 16.37 0.00 3.93
849 851 6.097554 ACATATAGAGATCCGGATTTGCCTAG 59.902 42.308 20.22 8.37 0.00 3.02
850 852 2.964209 AGAGATCCGGATTTGCCTAGA 58.036 47.619 20.22 0.00 0.00 2.43
851 853 3.515562 AGAGATCCGGATTTGCCTAGAT 58.484 45.455 20.22 0.00 31.96 1.98
852 854 3.260380 AGAGATCCGGATTTGCCTAGATG 59.740 47.826 20.22 0.00 30.10 2.90
853 855 2.079925 GATCCGGATTTGCCTAGATGC 58.920 52.381 20.22 0.00 30.10 3.91
854 856 1.131638 TCCGGATTTGCCTAGATGCT 58.868 50.000 0.00 0.00 0.00 3.79
855 857 1.070758 TCCGGATTTGCCTAGATGCTC 59.929 52.381 0.00 0.00 0.00 4.26
856 858 1.071385 CCGGATTTGCCTAGATGCTCT 59.929 52.381 0.00 0.00 0.00 4.09
857 859 2.486191 CCGGATTTGCCTAGATGCTCTT 60.486 50.000 0.00 0.00 0.00 2.85
858 860 3.244215 CCGGATTTGCCTAGATGCTCTTA 60.244 47.826 0.00 0.00 0.00 2.10
859 861 4.564406 CCGGATTTGCCTAGATGCTCTTAT 60.564 45.833 0.00 0.00 0.00 1.73
860 862 4.629200 CGGATTTGCCTAGATGCTCTTATC 59.371 45.833 0.00 0.00 0.00 1.75
861 863 5.555017 GGATTTGCCTAGATGCTCTTATCA 58.445 41.667 0.00 0.00 0.00 2.15
862 864 5.411053 GGATTTGCCTAGATGCTCTTATCAC 59.589 44.000 0.00 0.00 0.00 3.06
863 865 5.357742 TTTGCCTAGATGCTCTTATCACA 57.642 39.130 0.00 0.00 0.00 3.58
864 866 4.597404 TGCCTAGATGCTCTTATCACAG 57.403 45.455 0.00 0.00 0.00 3.66
865 867 3.244009 TGCCTAGATGCTCTTATCACAGC 60.244 47.826 0.00 0.00 36.08 4.40
866 868 3.573598 CCTAGATGCTCTTATCACAGCG 58.426 50.000 0.00 0.00 38.59 5.18
867 869 3.005261 CCTAGATGCTCTTATCACAGCGT 59.995 47.826 0.00 0.00 38.59 5.07
868 870 3.533606 AGATGCTCTTATCACAGCGTT 57.466 42.857 0.00 0.00 38.59 4.84
869 871 3.866651 AGATGCTCTTATCACAGCGTTT 58.133 40.909 0.00 0.00 38.59 3.60
870 872 3.620374 AGATGCTCTTATCACAGCGTTTG 59.380 43.478 0.00 0.00 38.59 2.93
871 873 3.038788 TGCTCTTATCACAGCGTTTGA 57.961 42.857 0.00 0.00 38.59 2.69
872 874 2.736721 TGCTCTTATCACAGCGTTTGAC 59.263 45.455 0.00 0.00 38.59 3.18
873 875 2.222596 GCTCTTATCACAGCGTTTGACG 60.223 50.000 0.00 0.00 45.88 4.35
874 876 2.333926 TCTTATCACAGCGTTTGACGG 58.666 47.619 2.48 0.00 42.82 4.79
875 877 0.793861 TTATCACAGCGTTTGACGGC 59.206 50.000 2.48 0.00 42.82 5.68
876 878 1.017177 TATCACAGCGTTTGACGGCC 61.017 55.000 0.00 0.00 42.82 6.13
877 879 3.276091 CACAGCGTTTGACGGCCA 61.276 61.111 2.24 0.00 42.82 5.36
878 880 2.281484 ACAGCGTTTGACGGCCAT 60.281 55.556 2.24 0.00 42.82 4.40
879 881 2.325082 ACAGCGTTTGACGGCCATC 61.325 57.895 2.24 0.00 42.82 3.51
880 882 3.118454 AGCGTTTGACGGCCATCG 61.118 61.111 2.24 0.00 42.82 3.84
881 883 3.115892 GCGTTTGACGGCCATCGA 61.116 61.111 2.24 0.00 42.82 3.59
882 884 3.081133 CGTTTGACGGCCATCGAG 58.919 61.111 2.24 0.00 42.43 4.04
883 885 1.445410 CGTTTGACGGCCATCGAGA 60.445 57.895 2.24 0.00 42.43 4.04
884 886 0.806102 CGTTTGACGGCCATCGAGAT 60.806 55.000 2.24 0.00 42.43 2.75
885 887 1.535226 CGTTTGACGGCCATCGAGATA 60.535 52.381 2.24 0.00 42.43 1.98
886 888 1.859080 GTTTGACGGCCATCGAGATAC 59.141 52.381 2.24 0.00 42.43 2.24
887 889 0.030235 TTGACGGCCATCGAGATACG 59.970 55.000 2.24 0.00 42.43 3.06
888 890 1.729838 GACGGCCATCGAGATACGC 60.730 63.158 2.24 1.44 42.43 4.42
889 891 2.335011 CGGCCATCGAGATACGCA 59.665 61.111 2.24 0.00 42.43 5.24
890 892 1.299850 CGGCCATCGAGATACGCAA 60.300 57.895 2.24 0.00 42.43 4.85
891 893 1.278172 CGGCCATCGAGATACGCAAG 61.278 60.000 2.24 0.00 42.43 4.01
892 894 0.946221 GGCCATCGAGATACGCAAGG 60.946 60.000 0.00 0.00 46.39 3.61
893 895 0.946221 GCCATCGAGATACGCAAGGG 60.946 60.000 0.00 0.00 46.39 3.95
894 896 0.673985 CCATCGAGATACGCAAGGGA 59.326 55.000 0.00 0.00 46.39 4.20
895 897 1.273606 CCATCGAGATACGCAAGGGAT 59.726 52.381 0.00 0.00 46.39 3.85
896 898 2.289072 CCATCGAGATACGCAAGGGATT 60.289 50.000 0.00 0.00 46.39 3.01
897 899 2.795175 TCGAGATACGCAAGGGATTC 57.205 50.000 0.00 0.00 46.39 2.52
898 900 1.340248 TCGAGATACGCAAGGGATTCC 59.660 52.381 0.00 0.00 46.39 3.01
899 901 1.784525 GAGATACGCAAGGGATTCCG 58.215 55.000 0.00 0.00 46.39 4.30
900 902 1.340248 GAGATACGCAAGGGATTCCGA 59.660 52.381 0.00 0.00 46.39 4.55
901 903 1.971357 AGATACGCAAGGGATTCCGAT 59.029 47.619 0.00 0.00 46.39 4.18
902 904 2.069273 GATACGCAAGGGATTCCGATG 58.931 52.381 0.00 0.00 46.39 3.84
903 905 0.531974 TACGCAAGGGATTCCGATGC 60.532 55.000 17.07 17.07 43.00 3.91
904 906 1.524621 CGCAAGGGATTCCGATGCT 60.525 57.895 21.76 2.39 43.71 3.79
905 907 1.097547 CGCAAGGGATTCCGATGCTT 61.098 55.000 21.76 7.64 43.71 3.91
906 908 0.383231 GCAAGGGATTCCGATGCTTG 59.617 55.000 18.85 15.69 43.06 4.01
907 909 0.383231 CAAGGGATTCCGATGCTTGC 59.617 55.000 6.52 0.00 38.33 4.01
908 910 0.753111 AAGGGATTCCGATGCTTGCC 60.753 55.000 0.00 0.00 38.33 4.52
909 911 1.453745 GGGATTCCGATGCTTGCCA 60.454 57.895 0.00 0.00 0.00 4.92
910 912 1.450531 GGGATTCCGATGCTTGCCAG 61.451 60.000 0.00 0.00 0.00 4.85
921 923 2.591923 TGCTTGCCAGAAAATACACCA 58.408 42.857 0.00 0.00 0.00 4.17
950 952 0.382158 CTCTCAGCAGCATTGGCATG 59.618 55.000 0.00 0.00 44.61 4.06
1004 1006 0.251121 ATGTCCAACGGCACCATGAA 60.251 50.000 0.00 0.00 0.00 2.57
1308 1310 1.304217 TCACCTGTCCCTCGACCTC 60.304 63.158 0.00 0.00 38.32 3.85
1475 1477 2.877691 GTTCAACGGCATGGAGGC 59.122 61.111 0.00 0.00 39.93 4.70
1644 1646 2.029623 GCAAGCCATGACATCCAATCT 58.970 47.619 0.00 0.00 0.00 2.40
1645 1647 2.034305 GCAAGCCATGACATCCAATCTC 59.966 50.000 0.00 0.00 0.00 2.75
1646 1648 3.284617 CAAGCCATGACATCCAATCTCA 58.715 45.455 0.00 0.00 0.00 3.27
1668 1676 4.821589 CCTTCCTGCCTCGACCGC 62.822 72.222 0.00 0.00 0.00 5.68
1682 1690 0.741221 GACCGCCGATCTTCAGCTTT 60.741 55.000 0.00 0.00 0.00 3.51
1683 1691 1.021390 ACCGCCGATCTTCAGCTTTG 61.021 55.000 0.00 0.00 0.00 2.77
1686 1694 1.717937 CCGATCTTCAGCTTTGCCG 59.282 57.895 0.00 0.00 0.00 5.69
1774 1782 0.317479 ACCTGACGTTCGGGAAGAAG 59.683 55.000 16.66 0.00 45.95 2.85
1904 1912 5.833131 ACCAATGATCCTAATGGCGTATTTT 59.167 36.000 0.00 0.00 36.37 1.82
1936 1944 5.993106 AGGTTCTTTTCTTCGACTTCTTG 57.007 39.130 0.00 0.00 0.00 3.02
1951 1962 6.876789 TCGACTTCTTGCATTAGGATGTTTTA 59.123 34.615 0.00 0.00 35.63 1.52
2206 2503 2.146342 AGCAGGAATTGAACACGTGAG 58.854 47.619 25.01 0.00 0.00 3.51
2257 2561 3.004315 TCCTTTGGTCTTGACGCAATTTC 59.996 43.478 5.84 0.00 0.00 2.17
2258 2562 3.308530 CTTTGGTCTTGACGCAATTTCC 58.691 45.455 5.84 0.00 0.00 3.13
2335 2639 0.898320 AGACCGTGGACATTCTCAGG 59.102 55.000 0.00 0.00 0.00 3.86
2430 2734 5.183140 GCTCCATGTTTGTAATGGTTAGTGT 59.817 40.000 2.57 0.00 44.27 3.55
2461 2765 1.199789 GTTGCCAAGACATCATGCGAA 59.800 47.619 0.00 0.00 0.00 4.70
2462 2766 1.753930 TGCCAAGACATCATGCGAAT 58.246 45.000 0.00 0.00 0.00 3.34
2464 2768 1.268896 GCCAAGACATCATGCGAATGG 60.269 52.381 2.82 0.00 0.00 3.16
2465 2769 2.019249 CCAAGACATCATGCGAATGGT 58.981 47.619 2.82 0.00 0.00 3.55
2467 2771 3.119388 CCAAGACATCATGCGAATGGTTT 60.119 43.478 2.82 0.00 0.00 3.27
2468 2772 3.770263 AGACATCATGCGAATGGTTTG 57.230 42.857 2.82 2.14 0.00 2.93
2478 2783 2.598589 CGAATGGTTTGTTGCTGATGG 58.401 47.619 0.00 0.00 0.00 3.51
2486 2791 4.022416 GGTTTGTTGCTGATGGTGTATGAA 60.022 41.667 0.00 0.00 0.00 2.57
2489 2794 5.781210 TGTTGCTGATGGTGTATGAAAAA 57.219 34.783 0.00 0.00 0.00 1.94
2500 2805 9.369904 GATGGTGTATGAAAAATTTTACTGCAT 57.630 29.630 3.34 8.38 0.00 3.96
2501 2806 9.723601 ATGGTGTATGAAAAATTTTACTGCATT 57.276 25.926 3.34 0.00 0.00 3.56
2502 2807 9.553064 TGGTGTATGAAAAATTTTACTGCATTT 57.447 25.926 3.34 0.00 0.00 2.32
2609 2914 2.627699 CAGTGGTTGTTTTGCCAGGTAT 59.372 45.455 0.00 0.00 35.14 2.73
2611 2916 3.824443 AGTGGTTGTTTTGCCAGGTATAC 59.176 43.478 0.00 0.00 35.14 1.47
2622 2934 5.339008 TGCCAGGTATACTACAGTTTGAG 57.661 43.478 2.25 0.00 0.00 3.02
2628 2940 7.364408 CCAGGTATACTACAGTTTGAGCCTAAA 60.364 40.741 2.25 0.00 0.00 1.85
2630 2942 8.039538 AGGTATACTACAGTTTGAGCCTAAAAC 58.960 37.037 2.25 0.00 37.71 2.43
2631 2943 8.039538 GGTATACTACAGTTTGAGCCTAAAACT 58.960 37.037 1.00 1.00 46.25 2.66
2632 2944 9.085250 GTATACTACAGTTTGAGCCTAAAACTC 57.915 37.037 4.08 0.00 44.11 3.01
2633 2945 5.925509 ACTACAGTTTGAGCCTAAAACTCA 58.074 37.500 4.08 0.00 44.11 3.41
2634 2946 6.534634 ACTACAGTTTGAGCCTAAAACTCAT 58.465 36.000 4.08 0.00 44.11 2.90
2635 2947 6.998673 ACTACAGTTTGAGCCTAAAACTCATT 59.001 34.615 4.08 0.00 44.11 2.57
2636 2948 6.076981 ACAGTTTGAGCCTAAAACTCATTG 57.923 37.500 4.08 0.00 44.11 2.82
2637 2949 4.919754 CAGTTTGAGCCTAAAACTCATTGC 59.080 41.667 4.08 0.00 44.11 3.56
2638 2950 4.584325 AGTTTGAGCCTAAAACTCATTGCA 59.416 37.500 1.00 0.00 42.75 4.08
2639 2951 5.244626 AGTTTGAGCCTAAAACTCATTGCAT 59.755 36.000 1.00 0.00 42.75 3.96
2640 2952 6.434028 AGTTTGAGCCTAAAACTCATTGCATA 59.566 34.615 1.00 0.00 42.75 3.14
2641 2953 6.441093 TTGAGCCTAAAACTCATTGCATAG 57.559 37.500 0.00 0.00 43.40 2.23
2642 2954 4.336433 TGAGCCTAAAACTCATTGCATAGC 59.664 41.667 0.00 0.00 39.21 2.97
2643 2955 4.530875 AGCCTAAAACTCATTGCATAGCT 58.469 39.130 0.00 0.00 0.00 3.32
2644 2956 4.337555 AGCCTAAAACTCATTGCATAGCTG 59.662 41.667 0.00 0.00 0.00 4.24
2645 2957 4.096984 GCCTAAAACTCATTGCATAGCTGT 59.903 41.667 0.00 0.00 0.00 4.40
2646 2958 5.575957 CCTAAAACTCATTGCATAGCTGTG 58.424 41.667 6.03 6.03 0.00 3.66
2647 2959 4.445452 AAAACTCATTGCATAGCTGTGG 57.555 40.909 12.79 0.00 0.00 4.17
2658 2970 4.163268 TGCATAGCTGTGGTACAGGATTTA 59.837 41.667 12.79 0.00 46.01 1.40
2659 2971 5.163205 TGCATAGCTGTGGTACAGGATTTAT 60.163 40.000 12.79 0.00 46.01 1.40
2660 2972 5.765182 GCATAGCTGTGGTACAGGATTTATT 59.235 40.000 12.79 0.00 46.01 1.40
2661 2973 6.263168 GCATAGCTGTGGTACAGGATTTATTT 59.737 38.462 12.79 0.00 46.01 1.40
2662 2974 7.201821 GCATAGCTGTGGTACAGGATTTATTTT 60.202 37.037 12.79 0.00 46.01 1.82
2663 2975 8.686334 CATAGCTGTGGTACAGGATTTATTTTT 58.314 33.333 10.62 0.00 46.01 1.94
2687 2999 5.518848 TTGCTTTCTTTCTTCAGCAATCA 57.481 34.783 1.34 0.00 45.19 2.57
2688 3000 5.717078 TGCTTTCTTTCTTCAGCAATCAT 57.283 34.783 0.00 0.00 39.32 2.45
2689 3001 6.822667 TGCTTTCTTTCTTCAGCAATCATA 57.177 33.333 0.00 0.00 39.32 2.15
2690 3002 6.849502 TGCTTTCTTTCTTCAGCAATCATAG 58.150 36.000 0.00 0.00 39.32 2.23
2691 3003 5.742926 GCTTTCTTTCTTCAGCAATCATAGC 59.257 40.000 0.00 0.00 32.17 2.97
2692 3004 6.404513 GCTTTCTTTCTTCAGCAATCATAGCT 60.405 38.462 0.00 0.00 44.62 3.32
2700 3012 3.912496 AGCAATCATAGCTGTGGTACA 57.088 42.857 10.87 0.00 41.61 2.90
2713 3025 5.940192 CTGTGGTACAGTTTGAGCATAAA 57.060 39.130 0.00 0.00 41.80 1.40
2714 3026 6.312399 CTGTGGTACAGTTTGAGCATAAAA 57.688 37.500 0.00 0.00 41.80 1.52
2715 3027 6.067263 TGTGGTACAGTTTGAGCATAAAAC 57.933 37.500 0.00 0.00 41.80 2.43
2716 3028 5.825679 TGTGGTACAGTTTGAGCATAAAACT 59.174 36.000 5.81 5.81 41.80 2.66
2717 3029 6.017440 TGTGGTACAGTTTGAGCATAAAACTC 60.017 38.462 8.07 0.00 41.80 3.01
2718 3030 5.178623 TGGTACAGTTTGAGCATAAAACTCG 59.821 40.000 8.07 7.29 36.94 4.18
2719 3031 5.407387 GGTACAGTTTGAGCATAAAACTCGA 59.593 40.000 8.07 0.00 36.94 4.04
2720 3032 5.597813 ACAGTTTGAGCATAAAACTCGAG 57.402 39.130 11.84 11.84 36.94 4.04
2721 3033 4.083802 ACAGTTTGAGCATAAAACTCGAGC 60.084 41.667 13.61 0.00 36.94 5.03
2722 3034 4.153117 CAGTTTGAGCATAAAACTCGAGCT 59.847 41.667 13.61 1.87 36.94 4.09
2727 3039 4.871993 AGCATAAAACTCGAGCTCATTG 57.128 40.909 13.61 6.62 0.00 2.82
2728 3040 3.064545 AGCATAAAACTCGAGCTCATTGC 59.935 43.478 13.61 16.10 43.29 3.56
2729 3041 3.181507 GCATAAAACTCGAGCTCATTGCA 60.182 43.478 13.61 0.00 45.94 4.08
2730 3042 4.497006 GCATAAAACTCGAGCTCATTGCAT 60.497 41.667 13.61 0.00 45.94 3.96
2731 3043 5.277490 GCATAAAACTCGAGCTCATTGCATA 60.277 40.000 13.61 0.17 45.94 3.14
2732 3044 6.567321 GCATAAAACTCGAGCTCATTGCATAT 60.567 38.462 13.61 2.63 45.94 1.78
2733 3045 5.415415 AAAACTCGAGCTCATTGCATATC 57.585 39.130 13.61 0.00 45.94 1.63
2734 3046 4.333913 AACTCGAGCTCATTGCATATCT 57.666 40.909 13.61 0.00 45.94 1.98
2735 3047 3.651206 ACTCGAGCTCATTGCATATCTG 58.349 45.455 13.61 0.00 45.94 2.90
2736 3048 3.069300 ACTCGAGCTCATTGCATATCTGT 59.931 43.478 13.61 0.00 45.94 3.41
2737 3049 3.387397 TCGAGCTCATTGCATATCTGTG 58.613 45.455 15.40 0.00 45.94 3.66
2738 3050 2.479275 CGAGCTCATTGCATATCTGTGG 59.521 50.000 15.40 0.00 45.94 4.17
2739 3051 3.474600 GAGCTCATTGCATATCTGTGGT 58.525 45.455 9.40 0.00 45.94 4.16
2740 3052 4.635223 GAGCTCATTGCATATCTGTGGTA 58.365 43.478 9.40 0.00 45.94 3.25
2741 3053 4.384056 AGCTCATTGCATATCTGTGGTAC 58.616 43.478 0.00 0.00 45.94 3.34
2742 3054 4.129380 GCTCATTGCATATCTGTGGTACA 58.871 43.478 0.00 0.00 42.31 2.90
2743 3055 4.758674 GCTCATTGCATATCTGTGGTACAT 59.241 41.667 0.00 0.00 41.11 2.29
2744 3056 5.334646 GCTCATTGCATATCTGTGGTACATG 60.335 44.000 0.00 0.00 41.11 3.21
2745 3057 5.927819 TCATTGCATATCTGTGGTACATGA 58.072 37.500 0.00 0.00 44.52 3.07
2746 3058 6.536447 TCATTGCATATCTGTGGTACATGAT 58.464 36.000 0.00 0.00 44.52 2.45
2899 3213 0.176680 TCTCTCGAAGATGGCCTTGC 59.823 55.000 3.32 0.00 34.68 4.01
2900 3214 0.177604 CTCTCGAAGATGGCCTTGCT 59.822 55.000 3.32 0.00 34.68 3.91
2939 3253 3.330766 GCGACACAGCGAGACTAAT 57.669 52.632 0.00 0.00 0.00 1.73
2946 3260 4.734917 ACACAGCGAGACTAATAAGTGAC 58.265 43.478 0.00 0.00 35.56 3.67
2972 3286 0.183492 AGCTCACAAGTTCCCTGCAA 59.817 50.000 0.00 0.00 0.00 4.08
2973 3287 1.032014 GCTCACAAGTTCCCTGCAAA 58.968 50.000 0.00 0.00 0.00 3.68
3014 3328 9.826574 TTCCTACAAATAACCACTATGTATGTC 57.173 33.333 0.00 0.00 0.00 3.06
3176 3498 8.211629 GGTGACAATTGTAGGGAATCTATAGTT 58.788 37.037 11.95 0.00 0.00 2.24
3185 3507 6.893020 AGGGAATCTATAGTTTGGAACACT 57.107 37.500 0.69 0.00 39.29 3.55
3241 3563 7.027161 TGTTAACTTGTGTTCTTTCTTTGAGC 58.973 34.615 7.22 0.00 37.59 4.26
3243 3565 5.643379 ACTTGTGTTCTTTCTTTGAGCAA 57.357 34.783 0.00 0.00 0.00 3.91
3256 3578 3.475566 TTGAGCAAAGGATAGGATCGG 57.524 47.619 0.00 0.00 0.00 4.18
3276 3598 1.408405 GGAGCTAAACCTTAGGTGCCC 60.408 57.143 3.99 4.52 35.34 5.36
3277 3599 0.252197 AGCTAAACCTTAGGTGCCCG 59.748 55.000 3.99 0.00 35.34 6.13
3278 3600 0.251073 GCTAAACCTTAGGTGCCCGA 59.749 55.000 3.99 0.00 35.34 5.14
3279 3601 1.742750 GCTAAACCTTAGGTGCCCGAG 60.743 57.143 3.99 0.00 35.34 4.63
3280 3602 1.829222 CTAAACCTTAGGTGCCCGAGA 59.171 52.381 3.99 0.00 35.34 4.04
3287 3609 1.640917 TAGGTGCCCGAGAGAGTTTT 58.359 50.000 0.00 0.00 0.00 2.43
3361 3683 4.583426 TGTTTTTGTGTCATCGAAAGACG 58.417 39.130 14.27 0.00 46.97 4.18
3380 3702 0.602372 GAGGAATCCCTGATGAGCGC 60.602 60.000 0.00 0.00 44.53 5.92
3391 3713 0.179134 GATGAGCGCTGAAGTACCGT 60.179 55.000 18.48 0.00 0.00 4.83
3394 3716 0.866483 GAGCGCTGAAGTACCGTAGC 60.866 60.000 18.48 0.00 0.00 3.58
3430 3761 3.836949 CGGCATTGCACAGAATAAAAGT 58.163 40.909 11.39 0.00 0.00 2.66
3435 3766 6.369615 GGCATTGCACAGAATAAAAGTTTCAT 59.630 34.615 11.39 0.00 0.00 2.57
3442 3773 8.082242 GCACAGAATAAAAGTTTCATGGTAGTT 58.918 33.333 0.00 0.00 0.00 2.24
3480 4035 6.446909 TGGCAGTTGTATCCCATATAATCA 57.553 37.500 0.00 0.00 0.00 2.57
3489 4044 8.966155 TGTATCCCATATAATCAGTACTGGAA 57.034 34.615 22.48 4.80 0.00 3.53
3504 4059 8.584157 TCAGTACTGGAAAGTTACGGTATTTTA 58.416 33.333 22.48 0.00 35.43 1.52
3532 4087 3.122948 CGGAATCGACGTCTTTGAATTGT 59.877 43.478 14.70 0.00 39.00 2.71
3576 4131 2.496070 GTGTGTATAGAGAGTGGTGGCA 59.504 50.000 0.00 0.00 0.00 4.92
3604 4159 0.823356 GGTGGTCAAGTGTGGCATGT 60.823 55.000 0.00 0.00 0.00 3.21
3610 4165 2.225019 GTCAAGTGTGGCATGTTCAGAG 59.775 50.000 0.00 0.00 0.00 3.35
3631 4186 7.611855 TCAGAGGTCCTCTAATTTTGAATTTCC 59.388 37.037 21.41 0.00 38.99 3.13
3694 4249 5.591099 AGTGTCGAAGCAAATGATTTGTTT 58.409 33.333 17.85 17.85 44.96 2.83
3777 4332 9.965824 ACCTTGATGTAACTTTTACTTTGATTG 57.034 29.630 0.00 0.00 0.00 2.67
3789 4344 1.788308 CTTTGATTGCGTGCCTTTGTG 59.212 47.619 0.00 0.00 0.00 3.33
3847 4402 6.463995 TTGCTTACTTGATCAACCAAAGTT 57.536 33.333 3.38 0.00 36.33 2.66
3930 4485 5.957774 AGCAATTCCCCATACAAAACTACAT 59.042 36.000 0.00 0.00 0.00 2.29
3939 4494 6.753279 CCCATACAAAACTACATCATGCAAAG 59.247 38.462 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.767684 CGTATGCAGTTTGTATTGAAATCTTTA 57.232 29.630 0.00 0.00 0.00 1.85
1 2 7.754924 CCGTATGCAGTTTGTATTGAAATCTTT 59.245 33.333 0.00 0.00 0.00 2.52
2 3 7.120579 TCCGTATGCAGTTTGTATTGAAATCTT 59.879 33.333 0.00 0.00 0.00 2.40
3 4 6.597672 TCCGTATGCAGTTTGTATTGAAATCT 59.402 34.615 0.00 0.00 0.00 2.40
4 5 6.781138 TCCGTATGCAGTTTGTATTGAAATC 58.219 36.000 0.00 0.00 0.00 2.17
5 6 6.751514 TCCGTATGCAGTTTGTATTGAAAT 57.248 33.333 0.00 0.00 0.00 2.17
6 7 6.597672 AGATCCGTATGCAGTTTGTATTGAAA 59.402 34.615 0.00 0.00 0.00 2.69
7 8 6.112734 AGATCCGTATGCAGTTTGTATTGAA 58.887 36.000 0.00 0.00 0.00 2.69
8 9 5.670485 AGATCCGTATGCAGTTTGTATTGA 58.330 37.500 0.00 0.00 0.00 2.57
9 10 5.991328 AGATCCGTATGCAGTTTGTATTG 57.009 39.130 0.00 0.00 0.00 1.90
12 13 9.457436 TCTATATAGATCCGTATGCAGTTTGTA 57.543 33.333 8.44 0.00 0.00 2.41
13 14 8.244802 GTCTATATAGATCCGTATGCAGTTTGT 58.755 37.037 15.43 0.00 34.39 2.83
14 15 8.244113 TGTCTATATAGATCCGTATGCAGTTTG 58.756 37.037 15.43 0.00 34.39 2.93
15 16 8.349568 TGTCTATATAGATCCGTATGCAGTTT 57.650 34.615 15.43 0.00 34.39 2.66
16 17 7.939784 TGTCTATATAGATCCGTATGCAGTT 57.060 36.000 15.43 0.00 34.39 3.16
17 18 9.800572 ATATGTCTATATAGATCCGTATGCAGT 57.199 33.333 15.43 0.00 34.39 4.40
45 46 8.806146 AGCAAAATGAGTGAACCTACATTTTAT 58.194 29.630 13.60 6.09 45.06 1.40
46 47 8.177119 AGCAAAATGAGTGAACCTACATTTTA 57.823 30.769 13.60 0.00 45.06 1.52
47 48 7.054491 AGCAAAATGAGTGAACCTACATTTT 57.946 32.000 0.00 0.00 46.58 1.82
48 49 6.655078 AGCAAAATGAGTGAACCTACATTT 57.345 33.333 0.00 0.00 42.25 2.32
49 50 6.568462 CGAAGCAAAATGAGTGAACCTACATT 60.568 38.462 0.00 0.00 34.99 2.71
50 51 5.106555 CGAAGCAAAATGAGTGAACCTACAT 60.107 40.000 0.00 0.00 0.00 2.29
51 52 4.213270 CGAAGCAAAATGAGTGAACCTACA 59.787 41.667 0.00 0.00 0.00 2.74
52 53 4.213482 ACGAAGCAAAATGAGTGAACCTAC 59.787 41.667 0.00 0.00 0.00 3.18
53 54 4.385825 ACGAAGCAAAATGAGTGAACCTA 58.614 39.130 0.00 0.00 0.00 3.08
54 55 3.214328 ACGAAGCAAAATGAGTGAACCT 58.786 40.909 0.00 0.00 0.00 3.50
55 56 3.626028 ACGAAGCAAAATGAGTGAACC 57.374 42.857 0.00 0.00 0.00 3.62
56 57 7.684670 TCATATACGAAGCAAAATGAGTGAAC 58.315 34.615 0.00 0.00 0.00 3.18
57 58 7.841915 TCATATACGAAGCAAAATGAGTGAA 57.158 32.000 0.00 0.00 0.00 3.18
58 59 7.928167 AGATCATATACGAAGCAAAATGAGTGA 59.072 33.333 0.00 0.00 0.00 3.41
59 60 8.081208 AGATCATATACGAAGCAAAATGAGTG 57.919 34.615 0.00 0.00 0.00 3.51
60 61 8.668510 AAGATCATATACGAAGCAAAATGAGT 57.331 30.769 0.00 0.00 0.00 3.41
61 62 9.941664 AAAAGATCATATACGAAGCAAAATGAG 57.058 29.630 0.00 0.00 0.00 2.90
102 103 9.807921 TCCCTTCATTTCTAAATACAAGTCTTT 57.192 29.630 0.00 0.00 0.00 2.52
103 104 9.454859 CTCCCTTCATTTCTAAATACAAGTCTT 57.545 33.333 0.00 0.00 0.00 3.01
104 105 8.606830 ACTCCCTTCATTTCTAAATACAAGTCT 58.393 33.333 0.00 0.00 0.00 3.24
105 106 8.794335 ACTCCCTTCATTTCTAAATACAAGTC 57.206 34.615 0.00 0.00 0.00 3.01
169 170 4.503817 GCTGGAAAGAGGCCTCAAATTTTT 60.504 41.667 33.90 23.73 0.00 1.94
170 171 3.007290 GCTGGAAAGAGGCCTCAAATTTT 59.993 43.478 33.90 24.10 0.00 1.82
171 172 2.564504 GCTGGAAAGAGGCCTCAAATTT 59.435 45.455 33.90 24.45 0.00 1.82
172 173 2.174360 GCTGGAAAGAGGCCTCAAATT 58.826 47.619 33.90 24.05 0.00 1.82
173 174 1.618074 GGCTGGAAAGAGGCCTCAAAT 60.618 52.381 33.90 19.28 42.31 2.32
174 175 0.251341 GGCTGGAAAGAGGCCTCAAA 60.251 55.000 33.90 13.30 42.31 2.69
175 176 1.380302 GGCTGGAAAGAGGCCTCAA 59.620 57.895 33.90 12.96 42.31 3.02
176 177 2.959484 CGGCTGGAAAGAGGCCTCA 61.959 63.158 33.90 13.26 43.29 3.86
177 178 2.124942 CGGCTGGAAAGAGGCCTC 60.125 66.667 26.22 26.22 43.29 4.70
178 179 2.930562 ACGGCTGGAAAGAGGCCT 60.931 61.111 3.86 3.86 43.29 5.19
179 180 2.436824 GACGGCTGGAAAGAGGCC 60.437 66.667 0.00 0.00 42.18 5.19
180 181 2.815647 CGACGGCTGGAAAGAGGC 60.816 66.667 0.00 0.00 35.19 4.70
181 182 2.815647 GCGACGGCTGGAAAGAGG 60.816 66.667 0.00 0.00 35.83 3.69
182 183 2.815647 GGCGACGGCTGGAAAGAG 60.816 66.667 15.00 0.00 39.81 2.85
183 184 3.296709 GAGGCGACGGCTGGAAAGA 62.297 63.158 30.01 0.00 38.98 2.52
184 185 2.815647 GAGGCGACGGCTGGAAAG 60.816 66.667 30.01 0.00 38.98 2.62
185 186 4.388499 GGAGGCGACGGCTGGAAA 62.388 66.667 30.01 0.00 38.98 3.13
193 194 3.068691 TTGGAGGAGGAGGCGACG 61.069 66.667 0.00 0.00 0.00 5.12
194 195 1.258445 TTCTTGGAGGAGGAGGCGAC 61.258 60.000 0.00 0.00 0.00 5.19
195 196 0.544357 TTTCTTGGAGGAGGAGGCGA 60.544 55.000 0.00 0.00 0.00 5.54
196 197 0.324943 TTTTCTTGGAGGAGGAGGCG 59.675 55.000 0.00 0.00 0.00 5.52
197 198 1.952839 GCTTTTCTTGGAGGAGGAGGC 60.953 57.143 0.00 0.00 0.00 4.70
198 199 1.632920 AGCTTTTCTTGGAGGAGGAGG 59.367 52.381 0.00 0.00 0.00 4.30
199 200 3.118445 CCTAGCTTTTCTTGGAGGAGGAG 60.118 52.174 0.00 0.00 39.64 3.69
200 201 2.840651 CCTAGCTTTTCTTGGAGGAGGA 59.159 50.000 0.00 0.00 39.64 3.71
201 202 2.092699 CCCTAGCTTTTCTTGGAGGAGG 60.093 54.545 0.00 0.00 39.64 4.30
202 203 2.682269 GCCCTAGCTTTTCTTGGAGGAG 60.682 54.545 0.00 0.00 39.64 3.69
203 204 1.282157 GCCCTAGCTTTTCTTGGAGGA 59.718 52.381 0.00 0.00 39.64 3.71
204 205 1.683319 GGCCCTAGCTTTTCTTGGAGG 60.683 57.143 0.00 0.00 39.64 4.30
205 206 1.004745 TGGCCCTAGCTTTTCTTGGAG 59.995 52.381 0.00 0.00 39.64 3.86
206 207 1.072266 TGGCCCTAGCTTTTCTTGGA 58.928 50.000 0.00 0.00 39.64 3.53
207 208 1.753073 CATGGCCCTAGCTTTTCTTGG 59.247 52.381 0.00 0.00 39.73 3.61
208 209 1.753073 CCATGGCCCTAGCTTTTCTTG 59.247 52.381 0.00 0.00 39.73 3.02
209 210 1.640670 TCCATGGCCCTAGCTTTTCTT 59.359 47.619 6.96 0.00 39.73 2.52
210 211 1.213926 CTCCATGGCCCTAGCTTTTCT 59.786 52.381 6.96 0.00 39.73 2.52
211 212 1.685148 CTCCATGGCCCTAGCTTTTC 58.315 55.000 6.96 0.00 39.73 2.29
212 213 0.259938 CCTCCATGGCCCTAGCTTTT 59.740 55.000 6.96 0.00 39.73 2.27
213 214 1.925888 CCTCCATGGCCCTAGCTTT 59.074 57.895 6.96 0.00 39.73 3.51
214 215 3.666122 CCTCCATGGCCCTAGCTT 58.334 61.111 6.96 0.00 39.73 3.74
308 309 2.619147 CGTCTCGTCTTCCTGAGTAGA 58.381 52.381 0.00 0.00 33.88 2.59
474 475 4.330944 ACCTGAAGACACACGAACATAA 57.669 40.909 0.00 0.00 0.00 1.90
564 565 0.243095 GGAAGTCGTCGTGCTAAGGT 59.757 55.000 0.00 0.00 0.00 3.50
726 728 5.222079 TCTTCTGTTATGGCAGTACAACA 57.778 39.130 6.03 6.33 37.70 3.33
782 784 2.227757 TGACCGGATGGGCCTCAAA 61.228 57.895 9.46 0.00 46.01 2.69
783 785 2.609299 TGACCGGATGGGCCTCAA 60.609 61.111 9.46 0.00 46.01 3.02
784 786 3.399181 GTGACCGGATGGGCCTCA 61.399 66.667 9.46 0.00 46.01 3.86
785 787 3.083997 AGTGACCGGATGGGCCTC 61.084 66.667 9.46 0.00 46.01 4.70
786 788 3.402681 CAGTGACCGGATGGGCCT 61.403 66.667 9.46 0.00 46.01 5.19
787 789 3.682292 GACAGTGACCGGATGGGCC 62.682 68.421 9.46 0.00 46.01 5.80
789 791 2.184322 CGACAGTGACCGGATGGG 59.816 66.667 9.46 0.00 40.75 4.00
790 792 2.970639 ACGACAGTGACCGGATGG 59.029 61.111 9.46 0.00 42.84 3.51
816 818 3.127203 CGGATCTCTATATGTCCGTGGAC 59.873 52.174 12.17 12.17 46.29 4.02
817 819 3.344515 CGGATCTCTATATGTCCGTGGA 58.655 50.000 4.60 0.00 46.29 4.02
818 820 3.766676 CGGATCTCTATATGTCCGTGG 57.233 52.381 4.60 0.00 46.29 4.94
822 824 5.112686 GCAAATCCGGATCTCTATATGTCC 58.887 45.833 19.43 0.00 0.00 4.02
823 825 5.105146 AGGCAAATCCGGATCTCTATATGTC 60.105 44.000 19.43 9.73 40.77 3.06
824 826 4.780021 AGGCAAATCCGGATCTCTATATGT 59.220 41.667 19.43 0.00 40.77 2.29
825 827 5.350504 AGGCAAATCCGGATCTCTATATG 57.649 43.478 19.43 9.34 40.77 1.78
826 828 6.436027 TCTAGGCAAATCCGGATCTCTATAT 58.564 40.000 19.43 0.00 40.77 0.86
827 829 5.827756 TCTAGGCAAATCCGGATCTCTATA 58.172 41.667 19.43 7.83 40.77 1.31
828 830 4.678256 TCTAGGCAAATCCGGATCTCTAT 58.322 43.478 19.43 7.03 40.77 1.98
829 831 4.114015 TCTAGGCAAATCCGGATCTCTA 57.886 45.455 19.43 14.81 40.77 2.43
830 832 2.964209 TCTAGGCAAATCCGGATCTCT 58.036 47.619 19.43 14.48 40.77 3.10
831 833 3.594134 CATCTAGGCAAATCCGGATCTC 58.406 50.000 19.43 9.59 40.77 2.75
832 834 2.289945 GCATCTAGGCAAATCCGGATCT 60.290 50.000 19.43 12.97 40.77 2.75
833 835 2.079925 GCATCTAGGCAAATCCGGATC 58.920 52.381 19.43 5.10 40.77 3.36
834 836 1.701847 AGCATCTAGGCAAATCCGGAT 59.298 47.619 12.38 12.38 40.77 4.18
835 837 1.070758 GAGCATCTAGGCAAATCCGGA 59.929 52.381 6.61 6.61 40.77 5.14
836 838 1.517242 GAGCATCTAGGCAAATCCGG 58.483 55.000 0.00 0.00 40.77 5.14
849 851 3.618594 TCAAACGCTGTGATAAGAGCATC 59.381 43.478 0.00 0.00 34.69 3.91
850 852 3.372206 GTCAAACGCTGTGATAAGAGCAT 59.628 43.478 0.00 0.00 34.69 3.79
851 853 2.736721 GTCAAACGCTGTGATAAGAGCA 59.263 45.455 0.00 0.00 34.69 4.26
852 854 2.222596 CGTCAAACGCTGTGATAAGAGC 60.223 50.000 0.00 0.00 33.65 4.09
853 855 2.345641 CCGTCAAACGCTGTGATAAGAG 59.654 50.000 0.00 0.00 40.91 2.85
854 856 2.333926 CCGTCAAACGCTGTGATAAGA 58.666 47.619 0.00 0.00 40.91 2.10
855 857 1.201921 GCCGTCAAACGCTGTGATAAG 60.202 52.381 0.00 0.00 40.91 1.73
856 858 0.793861 GCCGTCAAACGCTGTGATAA 59.206 50.000 0.00 0.00 40.91 1.75
857 859 1.017177 GGCCGTCAAACGCTGTGATA 61.017 55.000 0.00 0.00 40.91 2.15
858 860 2.325082 GGCCGTCAAACGCTGTGAT 61.325 57.895 0.00 0.00 40.91 3.06
859 861 2.970324 GGCCGTCAAACGCTGTGA 60.970 61.111 0.00 0.00 40.91 3.58
860 862 2.513065 GATGGCCGTCAAACGCTGTG 62.513 60.000 20.55 0.00 40.91 3.66
861 863 2.281484 ATGGCCGTCAAACGCTGT 60.281 55.556 0.00 0.00 40.91 4.40
862 864 2.480555 GATGGCCGTCAAACGCTG 59.519 61.111 20.55 0.00 40.91 5.18
863 865 3.118454 CGATGGCCGTCAAACGCT 61.118 61.111 24.56 0.00 40.91 5.07
864 866 3.083600 CTCGATGGCCGTCAAACGC 62.084 63.158 24.56 0.00 40.91 4.84
865 867 0.806102 ATCTCGATGGCCGTCAAACG 60.806 55.000 24.56 11.45 42.11 3.60
866 868 1.859080 GTATCTCGATGGCCGTCAAAC 59.141 52.381 24.56 10.42 39.75 2.93
867 869 1.535226 CGTATCTCGATGGCCGTCAAA 60.535 52.381 24.56 10.98 42.86 2.69
868 870 0.030235 CGTATCTCGATGGCCGTCAA 59.970 55.000 24.56 5.45 42.86 3.18
869 871 1.652563 CGTATCTCGATGGCCGTCA 59.347 57.895 24.56 10.82 42.86 4.35
870 872 1.729838 GCGTATCTCGATGGCCGTC 60.730 63.158 15.54 15.54 42.86 4.79
871 873 2.011741 TTGCGTATCTCGATGGCCGT 62.012 55.000 0.00 0.00 42.86 5.68
872 874 1.278172 CTTGCGTATCTCGATGGCCG 61.278 60.000 0.00 0.00 42.86 6.13
873 875 0.946221 CCTTGCGTATCTCGATGGCC 60.946 60.000 0.00 0.00 42.86 5.36
874 876 0.946221 CCCTTGCGTATCTCGATGGC 60.946 60.000 0.00 0.00 42.86 4.40
875 877 0.673985 TCCCTTGCGTATCTCGATGG 59.326 55.000 0.00 0.00 42.86 3.51
876 878 2.732412 ATCCCTTGCGTATCTCGATG 57.268 50.000 0.00 0.00 42.86 3.84
877 879 2.028930 GGAATCCCTTGCGTATCTCGAT 60.029 50.000 0.00 0.00 42.86 3.59
878 880 1.340248 GGAATCCCTTGCGTATCTCGA 59.660 52.381 0.00 0.00 42.86 4.04
879 881 1.784525 GGAATCCCTTGCGTATCTCG 58.215 55.000 0.00 0.00 43.12 4.04
880 882 1.340248 TCGGAATCCCTTGCGTATCTC 59.660 52.381 0.00 0.00 45.28 2.75
881 883 1.410004 TCGGAATCCCTTGCGTATCT 58.590 50.000 0.00 0.00 45.28 1.98
882 884 2.069273 CATCGGAATCCCTTGCGTATC 58.931 52.381 0.00 0.00 45.28 2.24
883 885 1.878102 GCATCGGAATCCCTTGCGTAT 60.878 52.381 5.51 0.00 45.28 3.06
884 886 0.531974 GCATCGGAATCCCTTGCGTA 60.532 55.000 5.51 0.00 45.28 4.42
885 887 1.819632 GCATCGGAATCCCTTGCGT 60.820 57.895 5.51 0.00 45.28 5.24
886 888 1.097547 AAGCATCGGAATCCCTTGCG 61.098 55.000 13.31 0.00 46.29 4.85
887 889 0.383231 CAAGCATCGGAATCCCTTGC 59.617 55.000 11.79 11.79 38.66 4.01
888 890 0.383231 GCAAGCATCGGAATCCCTTG 59.617 55.000 10.42 10.42 36.78 3.61
889 891 0.753111 GGCAAGCATCGGAATCCCTT 60.753 55.000 0.00 0.00 0.00 3.95
890 892 1.152881 GGCAAGCATCGGAATCCCT 60.153 57.895 0.00 0.00 0.00 4.20
891 893 1.450531 CTGGCAAGCATCGGAATCCC 61.451 60.000 0.00 0.00 0.00 3.85
892 894 0.464373 TCTGGCAAGCATCGGAATCC 60.464 55.000 0.00 0.00 0.00 3.01
893 895 1.382522 TTCTGGCAAGCATCGGAATC 58.617 50.000 0.00 0.00 0.00 2.52
894 896 1.838112 TTTCTGGCAAGCATCGGAAT 58.162 45.000 0.00 0.00 0.00 3.01
895 897 1.614996 TTTTCTGGCAAGCATCGGAA 58.385 45.000 0.00 0.00 0.00 4.30
896 898 1.838112 ATTTTCTGGCAAGCATCGGA 58.162 45.000 0.00 0.00 0.00 4.55
897 899 2.423185 TGTATTTTCTGGCAAGCATCGG 59.577 45.455 0.00 0.00 0.00 4.18
898 900 3.429085 GTGTATTTTCTGGCAAGCATCG 58.571 45.455 0.00 0.00 0.00 3.84
899 901 3.193267 TGGTGTATTTTCTGGCAAGCATC 59.807 43.478 0.00 0.00 0.00 3.91
900 902 3.164268 TGGTGTATTTTCTGGCAAGCAT 58.836 40.909 0.00 0.00 0.00 3.79
901 903 2.557924 CTGGTGTATTTTCTGGCAAGCA 59.442 45.455 0.00 0.00 0.00 3.91
902 904 2.558359 ACTGGTGTATTTTCTGGCAAGC 59.442 45.455 0.00 0.00 0.00 4.01
903 905 4.074970 AGACTGGTGTATTTTCTGGCAAG 58.925 43.478 0.00 0.00 0.00 4.01
904 906 4.098914 AGACTGGTGTATTTTCTGGCAA 57.901 40.909 0.00 0.00 0.00 4.52
905 907 3.788227 AGACTGGTGTATTTTCTGGCA 57.212 42.857 0.00 0.00 0.00 4.92
906 908 6.555315 CAATAAGACTGGTGTATTTTCTGGC 58.445 40.000 0.00 0.00 0.00 4.85
907 909 6.375455 AGCAATAAGACTGGTGTATTTTCTGG 59.625 38.462 0.00 0.00 0.00 3.86
908 910 7.335422 AGAGCAATAAGACTGGTGTATTTTCTG 59.665 37.037 0.00 0.00 0.00 3.02
909 911 7.398024 AGAGCAATAAGACTGGTGTATTTTCT 58.602 34.615 0.00 0.00 0.00 2.52
910 912 7.334421 TGAGAGCAATAAGACTGGTGTATTTTC 59.666 37.037 0.00 0.00 0.00 2.29
950 952 2.047560 GTGGTACGGGACTGGCAC 60.048 66.667 0.00 0.00 0.00 5.01
1308 1310 2.522193 GGGGAGAGCTCGTAGGGG 60.522 72.222 8.37 0.00 0.00 4.79
1362 1364 0.385348 CGGAGCAGACGATCTCGATG 60.385 60.000 6.60 5.98 43.02 3.84
1404 1406 1.003355 CGGGAGCAGGATGTTGTGT 60.003 57.895 0.00 0.00 39.31 3.72
1475 1477 1.726533 GAGGAGGTCGAAGTAGCGGG 61.727 65.000 0.00 0.00 0.00 6.13
1644 1646 1.617018 CGAGGCAGGAAGGATGGTGA 61.617 60.000 0.00 0.00 0.00 4.02
1645 1647 1.153289 CGAGGCAGGAAGGATGGTG 60.153 63.158 0.00 0.00 0.00 4.17
1646 1648 1.306141 TCGAGGCAGGAAGGATGGT 60.306 57.895 0.00 0.00 0.00 3.55
1668 1676 0.740868 TCGGCAAAGCTGAAGATCGG 60.741 55.000 0.00 0.00 41.31 4.18
1682 1690 2.280797 GACCTGCAACAGTCGGCA 60.281 61.111 0.00 0.40 38.52 5.69
1683 1691 3.414700 CGACCTGCAACAGTCGGC 61.415 66.667 20.18 0.00 34.25 5.54
1708 1716 1.451028 GATGCCAAGCTTCCTCGCT 60.451 57.895 0.00 0.00 43.31 4.93
1904 1912 2.091885 AGAAAAGAACCTTGGTCCTGCA 60.092 45.455 0.00 0.00 0.00 4.41
1936 1944 9.638239 TCAGACAAAAATAAAACATCCTAATGC 57.362 29.630 0.00 0.00 36.26 3.56
2039 2336 0.316204 ATGCTTTCCACAAGCTGCAC 59.684 50.000 1.02 0.00 43.38 4.57
2143 2440 9.507329 TGGCTTTTATTATGTCTCCAGAATATC 57.493 33.333 0.00 0.00 35.36 1.63
2218 2515 7.269316 ACCAAAGGACAAAAACGTCATTTTAT 58.731 30.769 1.36 0.00 44.88 1.40
2235 2532 2.270352 ATTGCGTCAAGACCAAAGGA 57.730 45.000 7.75 0.00 0.00 3.36
2240 2537 2.270352 AGGAAATTGCGTCAAGACCA 57.730 45.000 0.00 0.00 0.00 4.02
2257 2561 1.228510 GATTGCTCCCTGGGGAAGG 59.771 63.158 14.00 2.36 44.66 3.46
2258 2562 1.228510 GGATTGCTCCCTGGGGAAG 59.771 63.158 14.00 4.84 44.66 3.46
2284 2588 1.949525 TCTTGCTTTGTGTTCTCCAGC 59.050 47.619 0.00 0.00 0.00 4.85
2335 2639 2.095567 CCAGCATATATCTGCGGTTTGC 60.096 50.000 11.24 0.00 46.86 3.68
2446 2750 3.770263 AACCATTCGCATGATGTCTTG 57.230 42.857 0.00 0.00 31.07 3.02
2461 2765 2.318908 ACACCATCAGCAACAAACCAT 58.681 42.857 0.00 0.00 0.00 3.55
2462 2766 1.774110 ACACCATCAGCAACAAACCA 58.226 45.000 0.00 0.00 0.00 3.67
2464 2768 4.764679 TCATACACCATCAGCAACAAAC 57.235 40.909 0.00 0.00 0.00 2.93
2465 2769 5.781210 TTTCATACACCATCAGCAACAAA 57.219 34.783 0.00 0.00 0.00 2.83
2467 2771 5.781210 TTTTTCATACACCATCAGCAACA 57.219 34.783 0.00 0.00 0.00 3.33
2468 2772 7.656707 AAATTTTTCATACACCATCAGCAAC 57.343 32.000 0.00 0.00 0.00 4.17
2501 2806 3.360867 TCCAGTTTCACCTGCAGAAAAA 58.639 40.909 17.39 9.51 36.80 1.94
2502 2807 3.011566 TCCAGTTTCACCTGCAGAAAA 57.988 42.857 17.39 9.88 36.80 2.29
2609 2914 7.058023 TGAGTTTTAGGCTCAAACTGTAGTA 57.942 36.000 26.66 8.83 43.16 1.82
2611 2916 7.301054 CAATGAGTTTTAGGCTCAAACTGTAG 58.699 38.462 26.66 12.63 43.16 2.74
2622 2934 4.096984 ACAGCTATGCAATGAGTTTTAGGC 59.903 41.667 0.00 0.00 0.00 3.93
2628 2940 3.077484 ACCACAGCTATGCAATGAGTT 57.923 42.857 0.00 0.00 0.00 3.01
2630 2942 3.534554 TGTACCACAGCTATGCAATGAG 58.465 45.455 0.00 0.00 0.00 2.90
2631 2943 3.534554 CTGTACCACAGCTATGCAATGA 58.465 45.455 0.00 0.00 39.62 2.57
2632 2944 2.615447 CCTGTACCACAGCTATGCAATG 59.385 50.000 0.00 0.00 44.63 2.82
2633 2945 2.505407 TCCTGTACCACAGCTATGCAAT 59.495 45.455 0.00 0.00 44.63 3.56
2634 2946 1.905894 TCCTGTACCACAGCTATGCAA 59.094 47.619 0.00 0.00 44.63 4.08
2635 2947 1.567357 TCCTGTACCACAGCTATGCA 58.433 50.000 0.64 0.00 44.63 3.96
2636 2948 2.918712 ATCCTGTACCACAGCTATGC 57.081 50.000 0.64 0.00 44.63 3.14
2637 2949 7.807977 AAATAAATCCTGTACCACAGCTATG 57.192 36.000 0.64 0.00 44.63 2.23
2638 2950 8.823220 AAAAATAAATCCTGTACCACAGCTAT 57.177 30.769 0.64 0.00 44.63 2.97
2666 2978 5.717078 ATGATTGCTGAAGAAAGAAAGCA 57.283 34.783 0.00 0.00 43.60 3.91
2667 2979 5.742926 GCTATGATTGCTGAAGAAAGAAAGC 59.257 40.000 0.00 0.00 36.18 3.51
2668 2980 7.086230 AGCTATGATTGCTGAAGAAAGAAAG 57.914 36.000 0.00 0.00 39.56 2.62
2680 2992 3.801698 CTGTACCACAGCTATGATTGCT 58.198 45.455 0.00 0.00 39.62 3.91
2691 3003 7.782337 GAGTTTTATGCTCAAACTGTACCACAG 60.782 40.741 11.64 4.79 43.16 3.66
2692 3004 5.825679 AGTTTTATGCTCAAACTGTACCACA 59.174 36.000 7.44 0.00 41.86 4.17
2693 3005 6.313744 AGTTTTATGCTCAAACTGTACCAC 57.686 37.500 7.44 0.00 41.86 4.16
2694 3006 5.178623 CGAGTTTTATGCTCAAACTGTACCA 59.821 40.000 11.64 0.00 43.16 3.25
2695 3007 5.407387 TCGAGTTTTATGCTCAAACTGTACC 59.593 40.000 11.64 0.24 43.16 3.34
2696 3008 6.462073 TCGAGTTTTATGCTCAAACTGTAC 57.538 37.500 11.64 0.00 43.16 2.90
2697 3009 5.120208 GCTCGAGTTTTATGCTCAAACTGTA 59.880 40.000 15.13 1.97 43.16 2.74
2698 3010 4.083802 GCTCGAGTTTTATGCTCAAACTGT 60.084 41.667 15.13 0.00 43.16 3.55
2699 3011 4.153117 AGCTCGAGTTTTATGCTCAAACTG 59.847 41.667 15.13 6.31 43.16 3.16
2700 3012 4.319177 AGCTCGAGTTTTATGCTCAAACT 58.681 39.130 15.13 7.84 45.28 2.66
2701 3013 4.642953 GAGCTCGAGTTTTATGCTCAAAC 58.357 43.478 15.13 0.00 46.41 2.93
2702 3014 4.928661 GAGCTCGAGTTTTATGCTCAAA 57.071 40.909 15.13 0.00 46.41 2.69
2706 3018 3.064545 GCAATGAGCTCGAGTTTTATGCT 59.935 43.478 15.13 3.18 41.15 3.79
2707 3019 3.181507 TGCAATGAGCTCGAGTTTTATGC 60.182 43.478 15.13 18.00 45.94 3.14
2708 3020 4.604843 TGCAATGAGCTCGAGTTTTATG 57.395 40.909 15.13 9.18 45.94 1.90
2709 3021 6.933521 AGATATGCAATGAGCTCGAGTTTTAT 59.066 34.615 15.13 4.30 45.94 1.40
2710 3022 6.201615 CAGATATGCAATGAGCTCGAGTTTTA 59.798 38.462 15.13 1.86 45.94 1.52
2711 3023 5.007430 CAGATATGCAATGAGCTCGAGTTTT 59.993 40.000 15.13 0.00 45.94 2.43
2712 3024 4.510711 CAGATATGCAATGAGCTCGAGTTT 59.489 41.667 15.13 2.46 45.94 2.66
2713 3025 4.056740 CAGATATGCAATGAGCTCGAGTT 58.943 43.478 15.13 8.18 45.94 3.01
2714 3026 3.069300 ACAGATATGCAATGAGCTCGAGT 59.931 43.478 15.13 0.23 45.94 4.18
2715 3027 3.429207 CACAGATATGCAATGAGCTCGAG 59.571 47.826 8.45 8.45 45.94 4.04
2716 3028 3.387397 CACAGATATGCAATGAGCTCGA 58.613 45.455 9.64 0.00 45.94 4.04
2717 3029 2.479275 CCACAGATATGCAATGAGCTCG 59.521 50.000 9.64 0.00 45.94 5.03
2718 3030 3.474600 ACCACAGATATGCAATGAGCTC 58.525 45.455 6.82 6.82 45.94 4.09
2719 3031 3.572632 ACCACAGATATGCAATGAGCT 57.427 42.857 0.00 0.00 45.94 4.09
2720 3032 4.129380 TGTACCACAGATATGCAATGAGC 58.871 43.478 0.00 0.00 45.96 4.26
2721 3033 5.993441 TCATGTACCACAGATATGCAATGAG 59.007 40.000 0.00 0.00 0.00 2.90
2722 3034 5.927819 TCATGTACCACAGATATGCAATGA 58.072 37.500 0.00 0.00 0.00 2.57
2723 3035 6.812879 ATCATGTACCACAGATATGCAATG 57.187 37.500 0.00 0.00 0.00 2.82
2724 3036 7.828508 AAATCATGTACCACAGATATGCAAT 57.171 32.000 0.00 0.00 0.00 3.56
2725 3037 7.643569 AAAATCATGTACCACAGATATGCAA 57.356 32.000 0.00 0.00 0.00 4.08
2726 3038 7.643569 AAAAATCATGTACCACAGATATGCA 57.356 32.000 0.00 0.00 0.00 3.96
2776 3088 7.779798 TGCTAGAATAAAATGCCAATAGAAGGT 59.220 33.333 0.00 0.00 0.00 3.50
2899 3213 1.830477 AGCAGAAGGACTTGAGCCTAG 59.170 52.381 0.00 0.00 33.76 3.02
2900 3214 1.827969 GAGCAGAAGGACTTGAGCCTA 59.172 52.381 0.00 0.00 33.76 3.93
2939 3253 2.693074 TGTGAGCTCACTGTGTCACTTA 59.307 45.455 38.81 18.18 46.55 2.24
2946 3260 1.869767 GGAACTTGTGAGCTCACTGTG 59.130 52.381 38.81 29.99 46.55 3.66
2972 3286 1.203100 AGGAAAGCAGGTGCCTCATTT 60.203 47.619 0.00 0.00 43.38 2.32
2973 3287 0.407139 AGGAAAGCAGGTGCCTCATT 59.593 50.000 0.00 0.00 43.38 2.57
3137 3459 6.530120 ACAATTGTCACCTACACATACTTGA 58.470 36.000 4.92 0.00 38.00 3.02
3241 3563 1.974236 AGCTCCCGATCCTATCCTTTG 59.026 52.381 0.00 0.00 0.00 2.77
3243 3565 3.544698 TTAGCTCCCGATCCTATCCTT 57.455 47.619 0.00 0.00 0.00 3.36
3256 3578 2.039818 GGCACCTAAGGTTTAGCTCC 57.960 55.000 0.00 0.00 31.02 4.70
3276 3598 4.508124 ACACTAACAAGCAAAACTCTCTCG 59.492 41.667 0.00 0.00 0.00 4.04
3277 3599 5.993106 ACACTAACAAGCAAAACTCTCTC 57.007 39.130 0.00 0.00 0.00 3.20
3278 3600 6.599638 AGAAACACTAACAAGCAAAACTCTCT 59.400 34.615 0.00 0.00 0.00 3.10
3279 3601 6.786207 AGAAACACTAACAAGCAAAACTCTC 58.214 36.000 0.00 0.00 0.00 3.20
3280 3602 6.759497 AGAAACACTAACAAGCAAAACTCT 57.241 33.333 0.00 0.00 0.00 3.24
3287 3609 4.702612 TGGACAAAGAAACACTAACAAGCA 59.297 37.500 0.00 0.00 0.00 3.91
3361 3683 0.602372 GCGCTCATCAGGGATTCCTC 60.602 60.000 0.00 0.00 42.67 3.71
3362 3684 1.053264 AGCGCTCATCAGGGATTCCT 61.053 55.000 2.64 0.00 46.26 3.36
3380 3702 5.120363 GGAAAGAAAAGCTACGGTACTTCAG 59.880 44.000 0.00 0.00 0.00 3.02
3391 3713 1.674817 CCGCCGAGGAAAGAAAAGCTA 60.675 52.381 0.00 0.00 45.00 3.32
3394 3716 1.234615 TGCCGCCGAGGAAAGAAAAG 61.235 55.000 0.91 0.00 45.00 2.27
3430 3761 8.974060 ACTAGAACAAGAAAACTACCATGAAA 57.026 30.769 0.00 0.00 0.00 2.69
3435 3766 6.877322 GCCATACTAGAACAAGAAAACTACCA 59.123 38.462 0.00 0.00 0.00 3.25
3442 3773 6.296026 ACAACTGCCATACTAGAACAAGAAA 58.704 36.000 0.00 0.00 0.00 2.52
3480 4035 8.588472 ACTAAAATACCGTAACTTTCCAGTACT 58.412 33.333 0.00 0.00 30.68 2.73
3504 4059 0.959372 AGACGTCGATTCCGGTGACT 60.959 55.000 10.46 0.00 36.24 3.41
3532 4087 2.363306 AGGCCAGACAACAAACATCA 57.637 45.000 5.01 0.00 0.00 3.07
3576 4131 2.092429 ACACTTGACCACCACAGTCATT 60.092 45.455 0.00 0.00 43.46 2.57
3604 4159 8.940397 AAATTCAAAATTAGAGGACCTCTGAA 57.060 30.769 30.88 24.04 41.37 3.02
3610 4165 7.946381 AGAGGAAATTCAAAATTAGAGGACC 57.054 36.000 0.00 0.00 0.00 4.46
3631 4186 7.713073 AGAAACTAGGAGAAACAACAAGAAGAG 59.287 37.037 0.00 0.00 0.00 2.85
3694 4249 5.883115 TGAATATTCCATTGCGAACCAAGTA 59.117 36.000 12.90 0.00 36.76 2.24
3789 4344 6.464834 CGAACAAACTATCACGAAAATAAGCC 59.535 38.462 0.00 0.00 0.00 4.35
3794 4349 7.359262 TCATCGAACAAACTATCACGAAAAT 57.641 32.000 0.00 0.00 33.77 1.82
3861 4416 7.754069 TTACAAAGAAAGAGCAAACACATTG 57.246 32.000 0.00 0.00 42.21 2.82
3907 4462 5.652994 TGTAGTTTTGTATGGGGAATTGC 57.347 39.130 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.