Multiple sequence alignment - TraesCS1A01G069900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G069900 chr1A 100.000 2550 0 0 1 2550 52521645 52519096 0.000000e+00 4710
1 TraesCS1A01G069900 chr1A 80.428 327 60 4 456 781 281647542 281647865 1.960000e-61 246
2 TraesCS1A01G069900 chr1A 82.547 212 31 6 462 671 371960255 371960462 5.600000e-42 182
3 TraesCS1A01G069900 chr1B 89.646 1159 67 17 849 1985 84563375 84562248 0.000000e+00 1426
4 TraesCS1A01G069900 chr1B 83.456 816 114 14 1 813 84569374 84568577 0.000000e+00 739
5 TraesCS1A01G069900 chr1B 87.547 265 19 4 1999 2262 84562126 84561875 6.900000e-76 294
6 TraesCS1A01G069900 chr1B 82.903 310 43 2 1882 2190 563374629 563374929 1.160000e-68 270
7 TraesCS1A01G069900 chr1D 89.341 835 43 12 856 1686 52738162 52737370 0.000000e+00 1007
8 TraesCS1A01G069900 chr1D 91.898 432 17 10 2123 2550 52711962 52711545 2.830000e-164 588
9 TraesCS1A01G069900 chr1D 91.506 259 18 2 1869 2127 52717254 52717000 1.120000e-93 353
10 TraesCS1A01G069900 chr1D 80.811 370 33 20 2001 2346 52736327 52735972 3.260000e-64 255
11 TraesCS1A01G069900 chr1D 79.863 293 31 13 1602 1880 52718676 52718398 3.350000e-44 189
12 TraesCS1A01G069900 chr1D 79.882 169 17 4 1747 1903 52736532 52736369 9.650000e-20 108
13 TraesCS1A01G069900 chr3B 84.541 621 53 16 1705 2298 672762622 672762018 2.200000e-160 575
14 TraesCS1A01G069900 chr2D 82.111 341 49 11 462 798 272992839 272992507 5.370000e-72 281
15 TraesCS1A01G069900 chr2D 77.744 328 66 3 472 794 593365731 593365406 7.200000e-46 195
16 TraesCS1A01G069900 chr7D 77.990 418 83 5 378 794 531102066 531102475 1.170000e-63 254
17 TraesCS1A01G069900 chr4A 77.871 357 76 3 432 787 642104458 642104104 4.270000e-53 219
18 TraesCS1A01G069900 chr4B 77.810 347 73 4 453 798 369182134 369182477 7.150000e-51 211
19 TraesCS1A01G069900 chr4B 83.654 104 17 0 687 790 424635784 424635887 5.810000e-17 99
20 TraesCS1A01G069900 chr5D 77.778 306 61 7 490 793 352944005 352943705 5.600000e-42 182
21 TraesCS1A01G069900 chr5A 75.399 313 71 6 488 798 109273817 109274125 2.040000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G069900 chr1A 52519096 52521645 2549 True 4710.000000 4710 100.000000 1 2550 1 chr1A.!!$R1 2549
1 TraesCS1A01G069900 chr1B 84561875 84563375 1500 True 860.000000 1426 88.596500 849 2262 2 chr1B.!!$R2 1413
2 TraesCS1A01G069900 chr1B 84568577 84569374 797 True 739.000000 739 83.456000 1 813 1 chr1B.!!$R1 812
3 TraesCS1A01G069900 chr1D 52735972 52738162 2190 True 456.666667 1007 83.344667 856 2346 3 chr1D.!!$R3 1490
4 TraesCS1A01G069900 chr1D 52717000 52718676 1676 True 271.000000 353 85.684500 1602 2127 2 chr1D.!!$R2 525
5 TraesCS1A01G069900 chr3B 672762018 672762622 604 True 575.000000 575 84.541000 1705 2298 1 chr3B.!!$R1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 370 0.172803 GACACGTACACCTAGCAGGG 59.827 60.0 7.06 0.71 40.58 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2298 4440 0.317854 GTGAAAGCAGGAAACCGTGC 60.318 55.0 0.0 0.0 43.53 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.905809 TACTTCTACGCCCCCAAGCA 60.906 55.000 0.00 0.00 0.00 3.91
40 41 4.096003 TACGCCCCCAAGCAGCTC 62.096 66.667 0.00 0.00 0.00 4.09
88 89 2.344025 GGGGACGTGTCTTATTGTGTC 58.656 52.381 0.00 0.00 0.00 3.67
89 90 1.990563 GGGACGTGTCTTATTGTGTCG 59.009 52.381 0.00 0.00 0.00 4.35
90 91 2.352030 GGGACGTGTCTTATTGTGTCGA 60.352 50.000 0.00 0.00 0.00 4.20
91 92 3.508762 GGACGTGTCTTATTGTGTCGAT 58.491 45.455 0.00 0.00 0.00 3.59
92 93 3.303495 GGACGTGTCTTATTGTGTCGATG 59.697 47.826 0.00 0.00 0.00 3.84
93 94 3.909430 ACGTGTCTTATTGTGTCGATGT 58.091 40.909 0.00 0.00 0.00 3.06
95 96 3.303495 CGTGTCTTATTGTGTCGATGTCC 59.697 47.826 0.00 0.00 0.00 4.02
96 97 4.242475 GTGTCTTATTGTGTCGATGTCCA 58.758 43.478 0.00 0.00 0.00 4.02
97 98 4.688879 GTGTCTTATTGTGTCGATGTCCAA 59.311 41.667 0.00 0.00 0.00 3.53
98 99 4.929211 TGTCTTATTGTGTCGATGTCCAAG 59.071 41.667 0.00 0.00 0.00 3.61
99 100 3.932710 TCTTATTGTGTCGATGTCCAAGC 59.067 43.478 0.00 0.00 0.00 4.01
100 101 2.183478 ATTGTGTCGATGTCCAAGCA 57.817 45.000 0.00 0.00 0.00 3.91
101 102 1.511850 TTGTGTCGATGTCCAAGCAG 58.488 50.000 0.00 0.00 0.00 4.24
102 103 0.950555 TGTGTCGATGTCCAAGCAGC 60.951 55.000 0.00 0.00 0.00 5.25
104 105 2.815211 TCGATGTCCAAGCAGCGC 60.815 61.111 0.00 0.00 46.24 5.92
105 106 2.816958 CGATGTCCAAGCAGCGCT 60.817 61.111 2.64 2.64 41.25 5.92
130 131 0.806102 ATTTCGTGGAGTCGGCATCG 60.806 55.000 0.00 0.00 37.82 3.84
132 133 4.498520 CGTGGAGTCGGCATCGCT 62.499 66.667 0.00 0.00 36.13 4.93
143 144 3.886340 CATCGCTGCAGCTTGTCT 58.114 55.556 34.22 12.65 39.32 3.41
145 146 1.744368 ATCGCTGCAGCTTGTCTGG 60.744 57.895 34.22 18.10 43.06 3.86
146 147 2.460662 ATCGCTGCAGCTTGTCTGGT 62.461 55.000 34.22 13.01 43.06 4.00
148 149 2.675056 GCTGCAGCTTGTCTGGTCG 61.675 63.158 31.33 0.00 43.06 4.79
150 151 2.666190 GCAGCTTGTCTGGTCGCA 60.666 61.111 0.00 0.00 43.06 5.10
151 152 2.037136 GCAGCTTGTCTGGTCGCAT 61.037 57.895 0.00 0.00 43.06 4.73
153 154 1.002366 CAGCTTGTCTGGTCGCATAC 58.998 55.000 0.00 0.00 39.15 2.39
158 159 4.201679 TCTGGTCGCATACGCCGG 62.202 66.667 0.00 0.00 40.81 6.13
174 175 1.444917 CCGGACGTGGATCATCTCGA 61.445 60.000 0.00 0.00 0.00 4.04
190 191 0.598562 TCGATGCCCGCTCTCTATTC 59.401 55.000 0.00 0.00 38.37 1.75
192 193 1.005630 ATGCCCGCTCTCTATTCGC 60.006 57.895 0.00 0.00 0.00 4.70
193 194 2.356433 GCCCGCTCTCTATTCGCC 60.356 66.667 0.00 0.00 0.00 5.54
202 203 3.127895 GCTCTCTATTCGCCGATATGTCT 59.872 47.826 0.00 0.00 0.00 3.41
206 207 4.795268 TCTATTCGCCGATATGTCTCAAC 58.205 43.478 0.00 0.00 0.00 3.18
207 208 3.735237 ATTCGCCGATATGTCTCAACT 57.265 42.857 0.00 0.00 0.00 3.16
208 209 2.492019 TCGCCGATATGTCTCAACTG 57.508 50.000 0.00 0.00 0.00 3.16
214 215 3.270027 CGATATGTCTCAACTGGGCAAA 58.730 45.455 0.00 0.00 0.00 3.68
216 217 2.664402 ATGTCTCAACTGGGCAAACT 57.336 45.000 0.00 0.00 0.00 2.66
217 218 3.788227 ATGTCTCAACTGGGCAAACTA 57.212 42.857 0.00 0.00 0.00 2.24
222 223 1.345089 TCAACTGGGCAAACTAGCGTA 59.655 47.619 0.00 0.00 34.64 4.42
229 230 2.470821 GGCAAACTAGCGTATGACGAT 58.529 47.619 2.65 0.00 46.05 3.73
237 238 1.203758 AGCGTATGACGATGTGGACAA 59.796 47.619 2.65 0.00 46.05 3.18
262 263 4.269603 CAGATGTTTGAGATGATCCACGAC 59.730 45.833 0.00 0.00 0.00 4.34
263 264 2.606108 TGTTTGAGATGATCCACGACG 58.394 47.619 0.00 0.00 0.00 5.12
274 275 3.991051 CACGACGGTGGCAGAGGT 61.991 66.667 0.00 0.00 40.58 3.85
280 281 0.818040 ACGGTGGCAGAGGTTGTTTC 60.818 55.000 0.00 0.00 0.00 2.78
281 282 1.841663 CGGTGGCAGAGGTTGTTTCG 61.842 60.000 0.00 0.00 0.00 3.46
284 285 0.756294 TGGCAGAGGTTGTTTCGAGA 59.244 50.000 0.00 0.00 0.00 4.04
285 286 1.347707 TGGCAGAGGTTGTTTCGAGAT 59.652 47.619 0.00 0.00 0.00 2.75
286 287 2.224523 TGGCAGAGGTTGTTTCGAGATT 60.225 45.455 0.00 0.00 0.00 2.40
287 288 2.416893 GGCAGAGGTTGTTTCGAGATTC 59.583 50.000 0.00 0.00 0.00 2.52
288 289 2.092838 GCAGAGGTTGTTTCGAGATTCG 59.907 50.000 0.00 0.00 42.10 3.34
291 292 0.446616 GGTTGTTTCGAGATTCGGCC 59.553 55.000 0.00 0.00 40.88 6.13
294 295 1.019278 TGTTTCGAGATTCGGCCAGC 61.019 55.000 2.24 0.00 40.88 4.85
301 302 2.203070 ATTCGGCCAGCGGATGAC 60.203 61.111 2.24 0.00 0.00 3.06
305 306 3.838271 GGCCAGCGGATGACTCGA 61.838 66.667 0.00 0.00 0.00 4.04
310 311 1.140589 AGCGGATGACTCGAAGCTG 59.859 57.895 0.00 0.00 33.31 4.24
351 352 2.279186 CACGTGCACACAGTCCGA 60.279 61.111 18.64 0.00 0.00 4.55
369 370 0.172803 GACACGTACACCTAGCAGGG 59.827 60.000 7.06 0.71 40.58 4.45
373 374 1.884075 CGTACACCTAGCAGGGCACA 61.884 60.000 7.06 0.00 40.58 4.57
375 376 1.884075 TACACCTAGCAGGGCACACG 61.884 60.000 7.06 0.00 40.58 4.49
376 377 2.603473 ACCTAGCAGGGCACACGA 60.603 61.111 7.06 0.00 40.58 4.35
388 389 1.809619 CACACGACCGGGCACATAG 60.810 63.158 8.76 0.00 0.00 2.23
395 396 2.367202 CCGGGCACATAGACCCAGT 61.367 63.158 0.00 0.00 45.73 4.00
397 398 0.389391 CGGGCACATAGACCCAGTAG 59.611 60.000 0.00 0.00 45.73 2.57
435 436 4.199310 CAGAAACCGGATTCATACACCAT 58.801 43.478 24.45 0.26 0.00 3.55
438 439 1.420138 ACCGGATTCATACACCATCCC 59.580 52.381 9.46 0.00 34.01 3.85
439 440 1.419762 CCGGATTCATACACCATCCCA 59.580 52.381 0.00 0.00 34.01 4.37
441 442 2.810400 CGGATTCATACACCATCCCACC 60.810 54.545 0.00 0.00 34.01 4.61
472 473 2.070783 GGCGACGTTGACCTTAATTCA 58.929 47.619 7.08 0.00 0.00 2.57
492 493 0.317938 GAGGAATGGTCGGTCGATCG 60.318 60.000 12.98 12.98 0.00 3.69
512 513 3.514309 TCGAAAGAAGAGGGGTAAAGGAG 59.486 47.826 0.00 0.00 37.03 3.69
513 514 3.514309 CGAAAGAAGAGGGGTAAAGGAGA 59.486 47.826 0.00 0.00 0.00 3.71
514 515 4.020485 CGAAAGAAGAGGGGTAAAGGAGAA 60.020 45.833 0.00 0.00 0.00 2.87
515 516 5.512576 CGAAAGAAGAGGGGTAAAGGAGAAA 60.513 44.000 0.00 0.00 0.00 2.52
516 517 5.506730 AAGAAGAGGGGTAAAGGAGAAAG 57.493 43.478 0.00 0.00 0.00 2.62
517 518 4.504382 AGAAGAGGGGTAAAGGAGAAAGT 58.496 43.478 0.00 0.00 0.00 2.66
518 519 4.914581 AGAAGAGGGGTAAAGGAGAAAGTT 59.085 41.667 0.00 0.00 0.00 2.66
520 521 5.244189 AGAGGGGTAAAGGAGAAAGTTTC 57.756 43.478 7.57 7.57 0.00 2.78
526 527 6.447162 GGGTAAAGGAGAAAGTTTCAACATG 58.553 40.000 17.65 0.00 0.00 3.21
527 528 6.264518 GGGTAAAGGAGAAAGTTTCAACATGA 59.735 38.462 17.65 0.00 0.00 3.07
528 529 7.201875 GGGTAAAGGAGAAAGTTTCAACATGAA 60.202 37.037 17.65 0.00 34.03 2.57
536 537 7.461749 AGAAAGTTTCAACATGAAGGAGGATA 58.538 34.615 17.65 0.00 37.70 2.59
576 577 1.678101 GTTGGCCACTAGCATTGATCC 59.322 52.381 3.88 0.00 46.50 3.36
578 579 0.886490 GGCCACTAGCATTGATCCGG 60.886 60.000 0.00 0.00 46.50 5.14
603 604 1.082104 GCACGGAGCAAAAAGGACG 60.082 57.895 0.00 0.00 44.79 4.79
604 605 1.082104 CACGGAGCAAAAAGGACGC 60.082 57.895 0.00 0.00 0.00 5.19
606 607 1.098712 ACGGAGCAAAAAGGACGCAA 61.099 50.000 0.00 0.00 0.00 4.85
607 608 0.660300 CGGAGCAAAAAGGACGCAAC 60.660 55.000 0.00 0.00 0.00 4.17
608 609 0.383949 GGAGCAAAAAGGACGCAACA 59.616 50.000 0.00 0.00 0.00 3.33
612 613 3.530535 AGCAAAAAGGACGCAACATTTT 58.469 36.364 0.00 0.00 35.74 1.82
635 636 5.144100 TGGGTCAACATTCATACTTGGTTT 58.856 37.500 0.00 0.00 0.00 3.27
637 638 5.390613 GGTCAACATTCATACTTGGTTTCG 58.609 41.667 0.00 0.00 0.00 3.46
651 652 3.815809 TGGTTTCGTGAGGACAAGAATT 58.184 40.909 0.00 0.00 42.08 2.17
653 654 5.369833 TGGTTTCGTGAGGACAAGAATTTA 58.630 37.500 0.00 0.00 42.08 1.40
657 658 7.415229 GTTTCGTGAGGACAAGAATTTAAAGT 58.585 34.615 0.00 0.00 42.08 2.66
659 660 6.522054 TCGTGAGGACAAGAATTTAAAGTCT 58.478 36.000 12.23 12.23 34.37 3.24
663 664 8.504815 GTGAGGACAAGAATTTAAAGTCTTACC 58.495 37.037 27.46 27.46 40.92 2.85
669 670 9.403583 ACAAGAATTTAAAGTCTTACCACAAGA 57.596 29.630 25.56 0.00 40.92 3.02
673 674 9.459640 GAATTTAAAGTCTTACCACAAGAAACC 57.540 33.333 8.36 0.00 0.00 3.27
680 681 0.476771 ACCACAAGAAACCCATCCGT 59.523 50.000 0.00 0.00 0.00 4.69
684 685 3.761752 CCACAAGAAACCCATCCGTAATT 59.238 43.478 0.00 0.00 0.00 1.40
699 700 6.746745 TCCGTAATTTTGGGATAAAGTCAC 57.253 37.500 0.00 0.00 0.00 3.67
708 709 4.843728 TGGGATAAAGTCACTCAACCATC 58.156 43.478 0.00 0.00 0.00 3.51
713 714 6.599244 GGATAAAGTCACTCAACCATCAATGA 59.401 38.462 0.00 0.00 0.00 2.57
723 724 4.815846 TCAACCATCAATGATACACCATCG 59.184 41.667 0.00 0.00 36.33 3.84
725 726 4.635223 ACCATCAATGATACACCATCGAG 58.365 43.478 0.00 0.00 36.33 4.04
731 732 2.747177 TGATACACCATCGAGGAGGTT 58.253 47.619 0.00 0.00 41.22 3.50
732 733 3.905968 TGATACACCATCGAGGAGGTTA 58.094 45.455 0.00 0.00 41.22 2.85
768 769 6.142139 TGCTGTCATTTGAAACAACTAATCG 58.858 36.000 0.00 0.00 0.00 3.34
769 770 5.569059 GCTGTCATTTGAAACAACTAATCGG 59.431 40.000 0.00 0.00 0.00 4.18
772 773 5.788531 GTCATTTGAAACAACTAATCGGTCG 59.211 40.000 0.00 0.00 0.00 4.79
773 774 4.735662 TTTGAAACAACTAATCGGTCGG 57.264 40.909 0.00 0.00 0.00 4.79
776 777 2.088950 AACAACTAATCGGTCGGTGG 57.911 50.000 0.00 0.00 0.00 4.61
777 778 0.390735 ACAACTAATCGGTCGGTGGC 60.391 55.000 0.00 0.00 0.00 5.01
778 779 1.087771 CAACTAATCGGTCGGTGGCC 61.088 60.000 0.00 0.00 0.00 5.36
799 800 2.672651 TGGTGCGCCAATGACCTG 60.673 61.111 18.77 0.00 42.83 4.00
808 809 1.679977 CAATGACCTGGCCCCACAG 60.680 63.158 0.00 0.00 38.21 3.66
817 818 3.455469 GCCCCACAGCTGCCATTC 61.455 66.667 15.27 0.00 0.00 2.67
818 819 2.757099 CCCCACAGCTGCCATTCC 60.757 66.667 15.27 0.00 0.00 3.01
819 820 2.357836 CCCACAGCTGCCATTCCT 59.642 61.111 15.27 0.00 0.00 3.36
820 821 1.751927 CCCACAGCTGCCATTCCTC 60.752 63.158 15.27 0.00 0.00 3.71
821 822 1.001764 CCACAGCTGCCATTCCTCA 60.002 57.895 15.27 0.00 0.00 3.86
822 823 1.030488 CCACAGCTGCCATTCCTCAG 61.030 60.000 15.27 0.00 0.00 3.35
828 829 2.408271 CTGCCATTCCTCAGCTAACA 57.592 50.000 0.00 0.00 0.00 2.41
829 830 2.928334 CTGCCATTCCTCAGCTAACAT 58.072 47.619 0.00 0.00 0.00 2.71
830 831 3.285484 CTGCCATTCCTCAGCTAACATT 58.715 45.455 0.00 0.00 0.00 2.71
831 832 3.698040 CTGCCATTCCTCAGCTAACATTT 59.302 43.478 0.00 0.00 0.00 2.32
832 833 3.696051 TGCCATTCCTCAGCTAACATTTC 59.304 43.478 0.00 0.00 0.00 2.17
833 834 3.950395 GCCATTCCTCAGCTAACATTTCT 59.050 43.478 0.00 0.00 0.00 2.52
834 835 4.036144 GCCATTCCTCAGCTAACATTTCTC 59.964 45.833 0.00 0.00 0.00 2.87
835 836 5.188434 CCATTCCTCAGCTAACATTTCTCA 58.812 41.667 0.00 0.00 0.00 3.27
836 837 5.649395 CCATTCCTCAGCTAACATTTCTCAA 59.351 40.000 0.00 0.00 0.00 3.02
837 838 6.151648 CCATTCCTCAGCTAACATTTCTCAAA 59.848 38.462 0.00 0.00 0.00 2.69
838 839 7.309377 CCATTCCTCAGCTAACATTTCTCAAAA 60.309 37.037 0.00 0.00 0.00 2.44
839 840 7.581213 TTCCTCAGCTAACATTTCTCAAAAA 57.419 32.000 0.00 0.00 0.00 1.94
840 841 7.765695 TCCTCAGCTAACATTTCTCAAAAAT 57.234 32.000 0.00 0.00 0.00 1.82
841 842 8.862325 TCCTCAGCTAACATTTCTCAAAAATA 57.138 30.769 0.00 0.00 0.00 1.40
842 843 9.295825 TCCTCAGCTAACATTTCTCAAAAATAA 57.704 29.630 0.00 0.00 0.00 1.40
843 844 9.912634 CCTCAGCTAACATTTCTCAAAAATAAA 57.087 29.630 0.00 0.00 0.00 1.40
915 917 0.884704 CATAACGGAAGGCATCGGGG 60.885 60.000 2.41 0.00 32.91 5.73
933 935 4.680237 CGTCGCCTCACCCAAGCA 62.680 66.667 0.00 0.00 0.00 3.91
934 936 2.743928 GTCGCCTCACCCAAGCAG 60.744 66.667 0.00 0.00 0.00 4.24
935 937 4.020617 TCGCCTCACCCAAGCAGG 62.021 66.667 0.00 0.00 37.03 4.85
971 973 2.569404 ACCTGAGCTTAAACCTCTCCAG 59.431 50.000 0.00 0.00 0.00 3.86
1313 1315 2.111756 CGCTGTGTTTTCTGACTTTGC 58.888 47.619 0.00 0.00 0.00 3.68
1314 1316 2.477694 CGCTGTGTTTTCTGACTTTGCA 60.478 45.455 0.00 0.00 0.00 4.08
1329 1331 3.061848 GCATGGTGGTGTTCGGGG 61.062 66.667 0.00 0.00 0.00 5.73
1452 1454 1.030457 GCAGAAGCAGAATCCATGGG 58.970 55.000 13.02 0.00 41.58 4.00
1524 1526 3.744660 GCAAGGTCAAGAGGAAGAAGAA 58.255 45.455 0.00 0.00 0.00 2.52
1536 1538 2.879026 GGAAGAAGAACAGAAAAGCCGT 59.121 45.455 0.00 0.00 0.00 5.68
1555 1557 0.896940 TCACGGAAGGGTAACTCGCT 60.897 55.000 0.00 0.00 41.15 4.93
1568 1570 1.560923 ACTCGCTTATGCATGTCGTC 58.439 50.000 10.16 0.00 39.64 4.20
1581 1583 0.468226 TGTCGTCAGAAAGGCCTTGT 59.532 50.000 21.33 9.44 0.00 3.16
1624 1629 4.391216 CCTCTTGTTGCTCTGACAGTAATG 59.609 45.833 1.59 0.00 0.00 1.90
1644 1649 2.807967 TGTCAAAAAGATCAGGACAGCG 59.192 45.455 0.00 0.00 33.88 5.18
1711 1734 5.912892 TGTGATCAGAAATATCGGTGCTTA 58.087 37.500 0.00 0.00 0.00 3.09
1854 2658 5.359194 TTCTGAATCCAGGTTTAGCTAGG 57.641 43.478 0.00 0.00 40.76 3.02
1859 2663 1.555075 TCCAGGTTTAGCTAGGTGCAG 59.445 52.381 4.27 0.00 45.94 4.41
1906 3907 4.672024 CGGTAGAACGCTCATATATTCGCT 60.672 45.833 0.00 0.00 0.00 4.93
1907 3908 5.162075 GGTAGAACGCTCATATATTCGCTT 58.838 41.667 0.00 0.00 0.00 4.68
1912 3913 6.425114 AGAACGCTCATATATTCGCTTCAAAT 59.575 34.615 12.42 0.00 0.00 2.32
1933 3934 9.734620 TCAAATCTTTTGAGTTCATGTTAGTTG 57.265 29.630 0.00 0.00 34.20 3.16
1954 3956 7.616313 AGTTGTAGTTTTCTAGAGAAGATGGG 58.384 38.462 0.00 0.00 35.21 4.00
1975 3977 1.204467 GGAAGGAGAGAGTGACAGCTG 59.796 57.143 13.48 13.48 0.00 4.24
1985 3987 2.797156 GAGTGACAGCTGGCATAATACG 59.203 50.000 28.33 0.00 34.33 3.06
1986 3988 2.168521 AGTGACAGCTGGCATAATACGT 59.831 45.455 28.33 1.57 34.33 3.57
1987 3989 3.383505 AGTGACAGCTGGCATAATACGTA 59.616 43.478 28.33 0.00 34.33 3.57
1997 4107 7.609146 AGCTGGCATAATACGTATACAGTACTA 59.391 37.037 8.83 0.00 32.69 1.82
2066 4184 5.751586 AGGTTTAACTGTTCAAGGTTCAGA 58.248 37.500 0.00 0.00 33.93 3.27
2081 4199 3.182372 GGTTCAGAAAAACATTTCGCAGC 59.818 43.478 0.00 0.00 36.14 5.25
2170 4298 1.889829 TCGGCTTATTTGTTTGGTGGG 59.110 47.619 0.00 0.00 0.00 4.61
2190 4318 3.620488 GGCTGAACTCCACCATTATTCA 58.380 45.455 0.00 0.00 0.00 2.57
2211 4339 4.158209 TCACGTTTACCATTCGGAGTATCA 59.842 41.667 0.00 0.00 36.25 2.15
2247 4375 3.758023 TCGACAACAGCATGATGGAAAAT 59.242 39.130 16.55 0.00 43.92 1.82
2282 4424 3.446161 CAGGATCATGAACTTGCAACCAT 59.554 43.478 0.00 0.00 0.00 3.55
2314 4456 2.200337 GGGCACGGTTTCCTGCTTT 61.200 57.895 0.00 0.00 33.63 3.51
2319 4461 1.608590 CACGGTTTCCTGCTTTCACAT 59.391 47.619 0.00 0.00 0.00 3.21
2322 4464 3.502211 ACGGTTTCCTGCTTTCACATAAG 59.498 43.478 0.00 0.00 0.00 1.73
2346 4488 3.792401 TCGATCTCTGTCTCTCAGACTC 58.208 50.000 5.31 0.00 46.77 3.36
2347 4489 2.872245 CGATCTCTGTCTCTCAGACTCC 59.128 54.545 5.31 0.00 46.77 3.85
2348 4490 3.681313 CGATCTCTGTCTCTCAGACTCCA 60.681 52.174 5.31 0.00 46.77 3.86
2349 4491 4.464008 GATCTCTGTCTCTCAGACTCCAT 58.536 47.826 5.31 0.00 46.77 3.41
2350 4492 3.619419 TCTCTGTCTCTCAGACTCCATG 58.381 50.000 5.31 0.00 46.77 3.66
2351 4493 3.265479 TCTCTGTCTCTCAGACTCCATGA 59.735 47.826 5.31 0.00 46.77 3.07
2352 4494 4.079844 TCTCTGTCTCTCAGACTCCATGAT 60.080 45.833 5.31 0.00 46.77 2.45
2353 4495 5.131809 TCTCTGTCTCTCAGACTCCATGATA 59.868 44.000 5.31 0.00 46.77 2.15
2354 4496 5.129634 TCTGTCTCTCAGACTCCATGATAC 58.870 45.833 5.31 0.00 46.77 2.24
2355 4497 4.211125 TGTCTCTCAGACTCCATGATACC 58.789 47.826 5.31 0.00 45.27 2.73
2356 4498 3.252215 GTCTCTCAGACTCCATGATACCG 59.748 52.174 0.00 0.00 41.88 4.02
2357 4499 2.556189 CTCTCAGACTCCATGATACCGG 59.444 54.545 0.00 0.00 0.00 5.28
2358 4500 2.091830 TCTCAGACTCCATGATACCGGT 60.092 50.000 13.98 13.98 0.00 5.28
2359 4501 2.695666 CTCAGACTCCATGATACCGGTT 59.304 50.000 15.04 0.00 0.00 4.44
2360 4502 3.104512 TCAGACTCCATGATACCGGTTT 58.895 45.455 15.04 4.10 0.00 3.27
2361 4503 3.132289 TCAGACTCCATGATACCGGTTTC 59.868 47.826 15.04 16.36 0.00 2.78
2362 4504 3.133003 CAGACTCCATGATACCGGTTTCT 59.867 47.826 23.09 8.50 0.00 2.52
2363 4505 3.385111 AGACTCCATGATACCGGTTTCTC 59.615 47.826 23.09 13.97 0.00 2.87
2364 4506 3.104512 ACTCCATGATACCGGTTTCTCA 58.895 45.455 23.09 18.51 0.00 3.27
2365 4507 3.118738 ACTCCATGATACCGGTTTCTCAC 60.119 47.826 23.09 6.11 0.00 3.51
2366 4508 3.104512 TCCATGATACCGGTTTCTCACT 58.895 45.455 23.09 5.61 0.00 3.41
2367 4509 4.283337 TCCATGATACCGGTTTCTCACTA 58.717 43.478 23.09 5.64 0.00 2.74
2368 4510 4.899457 TCCATGATACCGGTTTCTCACTAT 59.101 41.667 23.09 7.62 0.00 2.12
2369 4511 6.072649 TCCATGATACCGGTTTCTCACTATA 58.927 40.000 23.09 4.29 0.00 1.31
2370 4512 6.551975 TCCATGATACCGGTTTCTCACTATAA 59.448 38.462 23.09 3.61 0.00 0.98
2371 4513 7.234782 TCCATGATACCGGTTTCTCACTATAAT 59.765 37.037 23.09 2.24 0.00 1.28
2372 4514 7.878127 CCATGATACCGGTTTCTCACTATAATT 59.122 37.037 23.09 2.15 0.00 1.40
2373 4515 9.273016 CATGATACCGGTTTCTCACTATAATTT 57.727 33.333 23.09 1.53 0.00 1.82
2374 4516 8.882415 TGATACCGGTTTCTCACTATAATTTC 57.118 34.615 23.09 0.00 0.00 2.17
2375 4517 8.701895 TGATACCGGTTTCTCACTATAATTTCT 58.298 33.333 23.09 0.00 0.00 2.52
2379 4521 9.978044 ACCGGTTTCTCACTATAATTTCTATAC 57.022 33.333 0.00 0.00 0.00 1.47
2380 4522 9.976511 CCGGTTTCTCACTATAATTTCTATACA 57.023 33.333 0.00 0.00 0.00 2.29
2397 4539 9.996554 TTTCTATACAAGAAACTCTGTGATGAA 57.003 29.630 0.00 0.00 46.88 2.57
2398 4540 8.988064 TCTATACAAGAAACTCTGTGATGAAC 57.012 34.615 0.00 0.00 0.00 3.18
2399 4541 8.585018 TCTATACAAGAAACTCTGTGATGAACA 58.415 33.333 0.00 0.00 37.22 3.18
2400 4542 9.208022 CTATACAAGAAACTCTGTGATGAACAA 57.792 33.333 0.00 0.00 38.67 2.83
2401 4543 6.757897 ACAAGAAACTCTGTGATGAACAAA 57.242 33.333 0.00 0.00 38.67 2.83
2402 4544 7.156876 ACAAGAAACTCTGTGATGAACAAAA 57.843 32.000 0.00 0.00 38.67 2.44
2403 4545 7.601856 ACAAGAAACTCTGTGATGAACAAAAA 58.398 30.769 0.00 0.00 38.67 1.94
2404 4546 8.253113 ACAAGAAACTCTGTGATGAACAAAAAT 58.747 29.630 0.00 0.00 38.67 1.82
2405 4547 9.734620 CAAGAAACTCTGTGATGAACAAAAATA 57.265 29.630 0.00 0.00 38.67 1.40
2406 4548 9.956720 AAGAAACTCTGTGATGAACAAAAATAG 57.043 29.630 0.00 0.00 38.67 1.73
2407 4549 9.125026 AGAAACTCTGTGATGAACAAAAATAGT 57.875 29.630 0.00 0.00 38.67 2.12
2408 4550 9.736023 GAAACTCTGTGATGAACAAAAATAGTT 57.264 29.630 0.00 0.00 38.67 2.24
2410 4552 9.520204 AACTCTGTGATGAACAAAAATAGTTTG 57.480 29.630 0.00 0.00 38.67 2.93
2411 4553 7.649306 ACTCTGTGATGAACAAAAATAGTTTGC 59.351 33.333 0.00 0.00 38.67 3.68
2412 4554 7.487484 TCTGTGATGAACAAAAATAGTTTGCA 58.513 30.769 0.00 0.00 38.67 4.08
2413 4555 7.434897 TCTGTGATGAACAAAAATAGTTTGCAC 59.565 33.333 0.00 0.00 38.67 4.57
2414 4556 6.478344 TGTGATGAACAAAAATAGTTTGCACC 59.522 34.615 0.00 0.00 35.24 5.01
2415 4557 6.478344 GTGATGAACAAAAATAGTTTGCACCA 59.522 34.615 0.00 0.00 32.93 4.17
2416 4558 6.700960 TGATGAACAAAAATAGTTTGCACCAG 59.299 34.615 0.00 0.00 32.93 4.00
2417 4559 4.808364 TGAACAAAAATAGTTTGCACCAGC 59.192 37.500 0.00 0.00 42.57 4.85
2418 4560 4.670896 ACAAAAATAGTTTGCACCAGCT 57.329 36.364 0.00 0.00 42.74 4.24
2419 4561 4.370917 ACAAAAATAGTTTGCACCAGCTG 58.629 39.130 6.78 6.78 42.74 4.24
2420 4562 4.141959 ACAAAAATAGTTTGCACCAGCTGT 60.142 37.500 13.81 0.00 42.74 4.40
2424 4566 2.051334 AGTTTGCACCAGCTGTGTAA 57.949 45.000 13.81 13.31 46.10 2.41
2426 4568 3.798794 TTGCACCAGCTGTGTAACT 57.201 47.368 13.81 0.00 43.46 2.24
2427 4569 1.593196 TTGCACCAGCTGTGTAACTC 58.407 50.000 13.81 0.00 43.46 3.01
2428 4570 1.134250 TTGCACCAGCTGTGTAACTCA 60.134 47.619 13.81 1.89 43.46 3.41
2429 4571 2.487086 TTGCACCAGCTGTGTAACTCAT 60.487 45.455 13.81 0.00 43.46 2.90
2430 4572 4.359774 TTGCACCAGCTGTGTAACTCATC 61.360 47.826 13.81 0.00 43.46 2.92
2431 4573 1.995484 CACCAGCTGTGTAACTCATCG 59.005 52.381 13.81 0.00 40.26 3.84
2432 4574 1.893137 ACCAGCTGTGTAACTCATCGA 59.107 47.619 13.81 0.00 38.04 3.59
2433 4575 2.094494 ACCAGCTGTGTAACTCATCGAG 60.094 50.000 13.81 0.00 38.04 4.04
2434 4576 2.094494 CCAGCTGTGTAACTCATCGAGT 60.094 50.000 13.81 0.00 45.64 4.18
2435 4577 2.919859 CAGCTGTGTAACTCATCGAGTG 59.080 50.000 5.25 0.00 42.59 3.51
2436 4578 2.094494 AGCTGTGTAACTCATCGAGTGG 60.094 50.000 0.00 0.00 42.59 4.00
2437 4579 2.094700 GCTGTGTAACTCATCGAGTGGA 60.095 50.000 0.00 0.00 42.59 4.02
2438 4580 3.763902 CTGTGTAACTCATCGAGTGGAG 58.236 50.000 9.28 9.28 42.59 3.86
2439 4581 3.154710 TGTGTAACTCATCGAGTGGAGT 58.845 45.455 10.39 10.39 42.59 3.85
2440 4582 3.057526 TGTGTAACTCATCGAGTGGAGTG 60.058 47.826 15.30 0.00 42.59 3.51
2441 4583 3.190744 GTGTAACTCATCGAGTGGAGTGA 59.809 47.826 15.30 7.55 42.59 3.41
2442 4584 3.190744 TGTAACTCATCGAGTGGAGTGAC 59.809 47.826 18.52 18.52 42.59 3.67
2443 4585 2.208132 ACTCATCGAGTGGAGTGACT 57.792 50.000 14.21 0.00 41.76 3.41
2444 4586 2.088423 ACTCATCGAGTGGAGTGACTC 58.912 52.381 14.21 3.47 41.76 3.36
2448 4590 3.366629 GAGTGGAGTGACTCGGCA 58.633 61.111 6.50 0.00 33.39 5.69
2449 4591 1.214062 GAGTGGAGTGACTCGGCAG 59.786 63.158 6.50 0.00 33.39 4.85
2450 4592 2.433318 GTGGAGTGACTCGGCAGC 60.433 66.667 6.50 0.00 0.00 5.25
2451 4593 4.056125 TGGAGTGACTCGGCAGCG 62.056 66.667 6.50 0.00 0.00 5.18
2452 4594 3.749064 GGAGTGACTCGGCAGCGA 61.749 66.667 6.50 0.00 0.00 4.93
2453 4595 2.258591 GAGTGACTCGGCAGCGAA 59.741 61.111 0.00 0.00 0.00 4.70
2454 4596 1.803519 GAGTGACTCGGCAGCGAAG 60.804 63.158 0.00 0.00 0.00 3.79
2455 4597 2.201436 GAGTGACTCGGCAGCGAAGA 62.201 60.000 0.00 0.00 0.00 2.87
2456 4598 1.803519 GTGACTCGGCAGCGAAGAG 60.804 63.158 8.96 8.96 37.96 2.85
2457 4599 2.202676 GACTCGGCAGCGAAGAGG 60.203 66.667 13.51 0.10 36.40 3.69
2458 4600 2.992114 ACTCGGCAGCGAAGAGGT 60.992 61.111 13.51 0.57 36.40 3.85
2466 4608 2.442056 AGCGAAGAGGTGAGGTTGT 58.558 52.632 0.00 0.00 0.00 3.32
2467 4609 1.629043 AGCGAAGAGGTGAGGTTGTA 58.371 50.000 0.00 0.00 0.00 2.41
2468 4610 1.546476 AGCGAAGAGGTGAGGTTGTAG 59.454 52.381 0.00 0.00 0.00 2.74
2469 4611 1.544691 GCGAAGAGGTGAGGTTGTAGA 59.455 52.381 0.00 0.00 0.00 2.59
2470 4612 2.416162 GCGAAGAGGTGAGGTTGTAGAG 60.416 54.545 0.00 0.00 0.00 2.43
2471 4613 3.082548 CGAAGAGGTGAGGTTGTAGAGA 58.917 50.000 0.00 0.00 0.00 3.10
2472 4614 3.119779 CGAAGAGGTGAGGTTGTAGAGAC 60.120 52.174 0.00 0.00 0.00 3.36
2473 4615 3.527507 AGAGGTGAGGTTGTAGAGACA 57.472 47.619 0.00 0.00 0.00 3.41
2474 4616 3.426615 AGAGGTGAGGTTGTAGAGACAG 58.573 50.000 0.00 0.00 36.76 3.51
2475 4617 3.158676 GAGGTGAGGTTGTAGAGACAGT 58.841 50.000 0.00 0.00 36.76 3.55
2476 4618 3.158676 AGGTGAGGTTGTAGAGACAGTC 58.841 50.000 0.00 0.00 36.76 3.51
2477 4619 2.891580 GGTGAGGTTGTAGAGACAGTCA 59.108 50.000 2.66 0.00 36.76 3.41
2478 4620 3.511934 GGTGAGGTTGTAGAGACAGTCAT 59.488 47.826 2.66 0.00 36.76 3.06
2479 4621 4.489810 GTGAGGTTGTAGAGACAGTCATG 58.510 47.826 2.66 0.00 36.76 3.07
2480 4622 3.511540 TGAGGTTGTAGAGACAGTCATGG 59.488 47.826 2.66 0.00 36.76 3.66
2481 4623 2.834549 AGGTTGTAGAGACAGTCATGGG 59.165 50.000 2.66 0.00 36.76 4.00
2482 4624 2.622436 GTTGTAGAGACAGTCATGGGC 58.378 52.381 2.66 0.00 36.76 5.36
2483 4625 1.937191 TGTAGAGACAGTCATGGGCA 58.063 50.000 2.66 0.00 0.00 5.36
2484 4626 2.470990 TGTAGAGACAGTCATGGGCAT 58.529 47.619 2.66 0.00 0.00 4.40
2485 4627 2.432146 TGTAGAGACAGTCATGGGCATC 59.568 50.000 2.66 0.00 0.00 3.91
2486 4628 0.835941 AGAGACAGTCATGGGCATCC 59.164 55.000 2.66 0.00 0.00 3.51
2499 4641 4.248174 TGGGCATCCATACAATGAAAGA 57.752 40.909 0.00 0.00 38.32 2.52
2500 4642 4.209538 TGGGCATCCATACAATGAAAGAG 58.790 43.478 0.00 0.00 38.32 2.85
2501 4643 3.571401 GGGCATCCATACAATGAAAGAGG 59.429 47.826 0.00 0.00 0.00 3.69
2502 4644 4.464008 GGCATCCATACAATGAAAGAGGA 58.536 43.478 0.00 0.00 0.00 3.71
2503 4645 5.075493 GGCATCCATACAATGAAAGAGGAT 58.925 41.667 0.00 0.00 34.90 3.24
2504 4646 5.537674 GGCATCCATACAATGAAAGAGGATT 59.462 40.000 0.00 0.00 32.38 3.01
2505 4647 6.716628 GGCATCCATACAATGAAAGAGGATTA 59.283 38.462 0.00 0.00 32.38 1.75
2506 4648 7.395489 GGCATCCATACAATGAAAGAGGATTAT 59.605 37.037 0.00 0.00 32.38 1.28
2507 4649 8.800332 GCATCCATACAATGAAAGAGGATTATT 58.200 33.333 0.00 0.00 32.38 1.40
2510 4652 9.135189 TCCATACAATGAAAGAGGATTATTTGG 57.865 33.333 0.00 0.00 0.00 3.28
2511 4653 8.917088 CCATACAATGAAAGAGGATTATTTGGT 58.083 33.333 0.00 0.00 0.00 3.67
2514 4656 7.985476 ACAATGAAAGAGGATTATTTGGTACG 58.015 34.615 0.00 0.00 0.00 3.67
2515 4657 7.827236 ACAATGAAAGAGGATTATTTGGTACGA 59.173 33.333 0.00 0.00 0.00 3.43
2516 4658 7.787725 ATGAAAGAGGATTATTTGGTACGAC 57.212 36.000 0.00 0.00 0.00 4.34
2517 4659 6.942976 TGAAAGAGGATTATTTGGTACGACT 58.057 36.000 0.00 0.00 0.00 4.18
2518 4660 6.816640 TGAAAGAGGATTATTTGGTACGACTG 59.183 38.462 0.00 0.00 0.00 3.51
2519 4661 6.540438 AAGAGGATTATTTGGTACGACTGA 57.460 37.500 0.00 0.00 0.00 3.41
2520 4662 6.150396 AGAGGATTATTTGGTACGACTGAG 57.850 41.667 0.00 0.00 0.00 3.35
2521 4663 5.892119 AGAGGATTATTTGGTACGACTGAGA 59.108 40.000 0.00 0.00 0.00 3.27
2522 4664 6.039941 AGAGGATTATTTGGTACGACTGAGAG 59.960 42.308 0.00 0.00 0.00 3.20
2523 4665 5.892119 AGGATTATTTGGTACGACTGAGAGA 59.108 40.000 0.00 0.00 0.00 3.10
2524 4666 5.978322 GGATTATTTGGTACGACTGAGAGAC 59.022 44.000 0.00 0.00 0.00 3.36
2525 4667 3.870633 ATTTGGTACGACTGAGAGACC 57.129 47.619 0.00 0.00 0.00 3.85
2526 4668 2.581216 TTGGTACGACTGAGAGACCT 57.419 50.000 0.00 0.00 0.00 3.85
2527 4669 2.581216 TGGTACGACTGAGAGACCTT 57.419 50.000 0.00 0.00 0.00 3.50
2528 4670 2.872732 TGGTACGACTGAGAGACCTTT 58.127 47.619 0.00 0.00 0.00 3.11
2529 4671 3.228453 TGGTACGACTGAGAGACCTTTT 58.772 45.455 0.00 0.00 0.00 2.27
2530 4672 3.640029 TGGTACGACTGAGAGACCTTTTT 59.360 43.478 0.00 0.00 0.00 1.94
2531 4673 4.236147 GGTACGACTGAGAGACCTTTTTC 58.764 47.826 0.00 0.00 0.00 2.29
2532 4674 4.022155 GGTACGACTGAGAGACCTTTTTCT 60.022 45.833 0.00 0.00 0.00 2.52
2533 4675 4.674281 ACGACTGAGAGACCTTTTTCTT 57.326 40.909 0.00 0.00 0.00 2.52
2534 4676 5.024785 ACGACTGAGAGACCTTTTTCTTT 57.975 39.130 0.00 0.00 0.00 2.52
2535 4677 5.429130 ACGACTGAGAGACCTTTTTCTTTT 58.571 37.500 0.00 0.00 0.00 2.27
2536 4678 5.524281 ACGACTGAGAGACCTTTTTCTTTTC 59.476 40.000 0.00 0.00 0.00 2.29
2537 4679 5.755861 CGACTGAGAGACCTTTTTCTTTTCT 59.244 40.000 0.00 0.00 0.00 2.52
2538 4680 6.258947 CGACTGAGAGACCTTTTTCTTTTCTT 59.741 38.462 0.00 0.00 0.00 2.52
2539 4681 7.438459 CGACTGAGAGACCTTTTTCTTTTCTTA 59.562 37.037 0.00 0.00 0.00 2.10
2540 4682 9.278978 GACTGAGAGACCTTTTTCTTTTCTTAT 57.721 33.333 0.00 0.00 0.00 1.73
2541 4683 9.061435 ACTGAGAGACCTTTTTCTTTTCTTATG 57.939 33.333 0.00 0.00 0.00 1.90
2542 4684 7.875971 TGAGAGACCTTTTTCTTTTCTTATGC 58.124 34.615 0.00 0.00 0.00 3.14
2543 4685 7.040409 TGAGAGACCTTTTTCTTTTCTTATGCC 60.040 37.037 0.00 0.00 0.00 4.40
2544 4686 6.209589 AGAGACCTTTTTCTTTTCTTATGCCC 59.790 38.462 0.00 0.00 0.00 5.36
2545 4687 5.838521 AGACCTTTTTCTTTTCTTATGCCCA 59.161 36.000 0.00 0.00 0.00 5.36
2546 4688 5.853936 ACCTTTTTCTTTTCTTATGCCCAC 58.146 37.500 0.00 0.00 0.00 4.61
2547 4689 5.365314 ACCTTTTTCTTTTCTTATGCCCACA 59.635 36.000 0.00 0.00 0.00 4.17
2548 4690 6.043127 ACCTTTTTCTTTTCTTATGCCCACAT 59.957 34.615 0.00 0.00 40.49 3.21
2549 4691 6.936335 CCTTTTTCTTTTCTTATGCCCACATT 59.064 34.615 0.00 0.00 37.74 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.450312 CTGCTTGGGGGCGTAGAAG 60.450 63.158 0.00 0.00 34.52 2.85
22 23 4.101448 AGCTGCTTGGGGGCGTAG 62.101 66.667 0.00 0.00 34.52 3.51
45 46 2.210341 GACGAAGGTCGGGGACTGTC 62.210 65.000 0.00 0.00 45.59 3.51
46 47 2.203596 ACGAAGGTCGGGGACTGT 60.204 61.111 2.38 0.00 45.59 3.55
85 86 1.737735 CGCTGCTTGGACATCGACA 60.738 57.895 0.00 0.00 31.08 4.35
88 89 2.816958 AGCGCTGCTTGGACATCG 60.817 61.111 10.39 0.00 33.89 3.84
89 90 2.789917 CAGCGCTGCTTGGACATC 59.210 61.111 26.68 0.00 36.40 3.06
99 100 0.299895 CACGAAATAGAGCAGCGCTG 59.700 55.000 32.83 32.83 39.88 5.18
100 101 0.807667 CCACGAAATAGAGCAGCGCT 60.808 55.000 2.64 2.64 43.88 5.92
101 102 0.806102 TCCACGAAATAGAGCAGCGC 60.806 55.000 0.00 0.00 0.00 5.92
102 103 1.203928 CTCCACGAAATAGAGCAGCG 58.796 55.000 0.00 0.00 0.00 5.18
103 104 2.197577 GACTCCACGAAATAGAGCAGC 58.802 52.381 0.00 0.00 0.00 5.25
104 105 2.455032 CGACTCCACGAAATAGAGCAG 58.545 52.381 0.00 0.00 35.09 4.24
105 106 1.134367 CCGACTCCACGAAATAGAGCA 59.866 52.381 0.00 0.00 35.09 4.26
116 117 2.887568 CAGCGATGCCGACTCCAC 60.888 66.667 0.00 0.00 38.22 4.02
130 131 2.675056 CGACCAGACAAGCTGCAGC 61.675 63.158 31.53 31.53 43.50 5.25
132 133 2.666190 GCGACCAGACAAGCTGCA 60.666 61.111 1.02 0.00 43.50 4.41
136 137 1.999051 CGTATGCGACCAGACAAGC 59.001 57.895 0.00 0.00 41.33 4.01
143 144 4.501714 GTCCGGCGTATGCGACCA 62.502 66.667 7.60 0.00 44.82 4.02
158 159 1.413382 GCATCGAGATGATCCACGTC 58.587 55.000 16.45 0.00 41.20 4.34
174 175 1.005630 GCGAATAGAGAGCGGGCAT 60.006 57.895 0.00 0.00 0.00 4.40
190 191 1.491670 CCAGTTGAGACATATCGGCG 58.508 55.000 0.00 0.00 0.00 6.46
192 193 1.138859 TGCCCAGTTGAGACATATCGG 59.861 52.381 0.00 0.00 0.00 4.18
193 194 2.602257 TGCCCAGTTGAGACATATCG 57.398 50.000 0.00 0.00 0.00 2.92
202 203 0.107831 ACGCTAGTTTGCCCAGTTGA 59.892 50.000 0.00 0.00 0.00 3.18
206 207 1.933853 GTCATACGCTAGTTTGCCCAG 59.066 52.381 0.00 0.00 30.83 4.45
207 208 1.737696 CGTCATACGCTAGTTTGCCCA 60.738 52.381 0.00 0.00 33.65 5.36
208 209 0.928229 CGTCATACGCTAGTTTGCCC 59.072 55.000 0.00 0.00 33.65 5.36
214 215 2.033049 GTCCACATCGTCATACGCTAGT 59.967 50.000 0.00 0.00 42.21 2.57
216 217 2.018515 TGTCCACATCGTCATACGCTA 58.981 47.619 0.00 0.00 42.21 4.26
217 218 0.815095 TGTCCACATCGTCATACGCT 59.185 50.000 0.00 0.00 42.21 5.07
222 223 1.276138 TCTGCTTGTCCACATCGTCAT 59.724 47.619 0.00 0.00 0.00 3.06
229 230 2.880268 CTCAAACATCTGCTTGTCCACA 59.120 45.455 0.00 0.00 0.00 4.17
237 238 4.197750 GTGGATCATCTCAAACATCTGCT 58.802 43.478 0.00 0.00 0.00 4.24
262 263 1.841663 CGAAACAACCTCTGCCACCG 61.842 60.000 0.00 0.00 0.00 4.94
263 264 0.534203 TCGAAACAACCTCTGCCACC 60.534 55.000 0.00 0.00 0.00 4.61
269 270 2.931320 GCCGAATCTCGAAACAACCTCT 60.931 50.000 0.00 0.00 43.74 3.69
274 275 1.438651 CTGGCCGAATCTCGAAACAA 58.561 50.000 0.00 0.00 43.74 2.83
280 281 3.506059 ATCCGCTGGCCGAATCTCG 62.506 63.158 0.00 0.00 40.02 4.04
281 282 1.958205 CATCCGCTGGCCGAATCTC 60.958 63.158 0.00 0.00 40.02 2.75
284 285 2.203070 GTCATCCGCTGGCCGAAT 60.203 61.111 0.00 0.00 40.02 3.34
285 286 3.371097 GAGTCATCCGCTGGCCGAA 62.371 63.158 0.00 0.00 40.02 4.30
286 287 3.838271 GAGTCATCCGCTGGCCGA 61.838 66.667 0.00 0.00 40.02 5.54
288 289 3.371097 TTCGAGTCATCCGCTGGCC 62.371 63.158 0.00 0.00 0.00 5.36
291 292 1.140589 AGCTTCGAGTCATCCGCTG 59.859 57.895 0.00 0.00 0.00 5.18
294 295 1.554392 CTTCAGCTTCGAGTCATCCG 58.446 55.000 0.00 0.00 0.00 4.18
301 302 0.601046 TGTGCACCTTCAGCTTCGAG 60.601 55.000 15.69 0.00 0.00 4.04
344 345 1.129998 CTAGGTGTACGTGTCGGACTG 59.870 57.143 9.88 4.66 41.83 3.51
351 352 1.885163 GCCCTGCTAGGTGTACGTGT 61.885 60.000 0.00 0.00 31.93 4.49
369 370 3.943479 TATGTGCCCGGTCGTGTGC 62.943 63.158 0.00 0.00 0.00 4.57
373 374 2.718073 GGTCTATGTGCCCGGTCGT 61.718 63.158 0.00 0.00 0.00 4.34
375 376 2.504519 GGGTCTATGTGCCCGGTC 59.495 66.667 0.00 0.00 34.90 4.79
379 380 1.413077 GACTACTGGGTCTATGTGCCC 59.587 57.143 0.00 0.00 45.04 5.36
388 389 2.577593 GTGCCGGACTACTGGGTC 59.422 66.667 5.05 0.00 42.48 4.46
395 396 2.342650 GGGTGTACGTGCCGGACTA 61.343 63.158 5.05 0.00 41.83 2.59
397 398 3.927163 CTGGGTGTACGTGCCGGAC 62.927 68.421 5.05 0.00 41.64 4.79
408 409 0.768622 TGAATCCGGTTTCTGGGTGT 59.231 50.000 22.53 0.00 0.00 4.16
416 417 3.551846 GGATGGTGTATGAATCCGGTTT 58.448 45.455 0.00 0.00 31.11 3.27
435 436 2.363795 CGCCCTACTCTGGTGGGA 60.364 66.667 0.91 0.00 45.48 4.37
438 439 4.514577 CGCCGCCCTACTCTGGTG 62.515 72.222 0.00 0.00 0.00 4.17
439 440 4.753662 TCGCCGCCCTACTCTGGT 62.754 66.667 0.00 0.00 0.00 4.00
441 442 4.554363 CGTCGCCGCCCTACTCTG 62.554 72.222 0.00 0.00 0.00 3.35
460 461 5.626809 CGACCATTCCTCTGAATTAAGGTCA 60.627 44.000 16.80 0.00 44.30 4.02
467 468 2.418746 CGACCGACCATTCCTCTGAATT 60.419 50.000 0.00 0.00 39.20 2.17
470 471 0.323087 TCGACCGACCATTCCTCTGA 60.323 55.000 0.00 0.00 0.00 3.27
472 473 1.033574 GATCGACCGACCATTCCTCT 58.966 55.000 0.00 0.00 0.00 3.69
492 493 5.500546 TTCTCCTTTACCCCTCTTCTTTC 57.499 43.478 0.00 0.00 0.00 2.62
507 508 6.129179 TCCTTCATGTTGAAACTTTCTCCTT 58.871 36.000 3.22 0.00 35.73 3.36
512 513 6.581171 ATCCTCCTTCATGTTGAAACTTTC 57.419 37.500 0.00 0.00 35.73 2.62
513 514 7.461749 TCTATCCTCCTTCATGTTGAAACTTT 58.538 34.615 0.00 0.00 35.73 2.66
514 515 7.020827 TCTATCCTCCTTCATGTTGAAACTT 57.979 36.000 0.00 0.00 35.73 2.66
515 516 6.627087 TCTATCCTCCTTCATGTTGAAACT 57.373 37.500 0.00 0.00 35.73 2.66
516 517 7.337942 ACAATCTATCCTCCTTCATGTTGAAAC 59.662 37.037 0.00 0.00 35.73 2.78
517 518 7.405292 ACAATCTATCCTCCTTCATGTTGAAA 58.595 34.615 0.00 0.00 35.73 2.69
518 519 6.962182 ACAATCTATCCTCCTTCATGTTGAA 58.038 36.000 0.00 0.00 34.79 2.69
520 521 6.600822 ACAACAATCTATCCTCCTTCATGTTG 59.399 38.462 11.86 11.86 46.30 3.33
526 527 3.557595 CGCACAACAATCTATCCTCCTTC 59.442 47.826 0.00 0.00 0.00 3.46
527 528 3.197766 TCGCACAACAATCTATCCTCCTT 59.802 43.478 0.00 0.00 0.00 3.36
528 529 2.766263 TCGCACAACAATCTATCCTCCT 59.234 45.455 0.00 0.00 0.00 3.69
536 537 1.536766 CCACACATCGCACAACAATCT 59.463 47.619 0.00 0.00 0.00 2.40
578 579 1.523154 TTTTGCTCCGTGCCATGGAC 61.523 55.000 18.40 10.04 42.00 4.02
595 596 2.169561 ACCCAAAATGTTGCGTCCTTTT 59.830 40.909 0.00 0.00 33.01 2.27
598 599 0.958822 GACCCAAAATGTTGCGTCCT 59.041 50.000 2.42 0.00 36.81 3.85
601 602 1.478510 TGTTGACCCAAAATGTTGCGT 59.521 42.857 0.00 0.00 33.01 5.24
603 604 4.125703 TGAATGTTGACCCAAAATGTTGC 58.874 39.130 0.00 0.00 33.01 4.17
604 605 7.153985 AGTATGAATGTTGACCCAAAATGTTG 58.846 34.615 0.00 0.00 34.25 3.33
606 607 6.916360 AGTATGAATGTTGACCCAAAATGT 57.084 33.333 0.00 0.00 0.00 2.71
607 608 6.591062 CCAAGTATGAATGTTGACCCAAAATG 59.409 38.462 0.00 0.00 0.00 2.32
608 609 6.269769 ACCAAGTATGAATGTTGACCCAAAAT 59.730 34.615 0.00 0.00 0.00 1.82
612 613 4.380843 ACCAAGTATGAATGTTGACCCA 57.619 40.909 0.00 0.00 0.00 4.51
615 616 5.851177 CACGAAACCAAGTATGAATGTTGAC 59.149 40.000 0.00 0.00 0.00 3.18
616 617 5.760743 TCACGAAACCAAGTATGAATGTTGA 59.239 36.000 0.00 0.00 0.00 3.18
617 618 5.996219 TCACGAAACCAAGTATGAATGTTG 58.004 37.500 0.00 0.00 0.00 3.33
635 636 6.522054 AGACTTTAAATTCTTGTCCTCACGA 58.478 36.000 2.39 0.00 0.00 4.35
637 638 8.504815 GGTAAGACTTTAAATTCTTGTCCTCAC 58.495 37.037 23.75 15.30 33.96 3.51
651 652 6.424883 TGGGTTTCTTGTGGTAAGACTTTAA 58.575 36.000 0.00 0.00 0.00 1.52
653 654 4.862371 TGGGTTTCTTGTGGTAAGACTTT 58.138 39.130 0.00 0.00 0.00 2.66
657 658 3.558321 CGGATGGGTTTCTTGTGGTAAGA 60.558 47.826 0.00 0.00 0.00 2.10
659 660 2.106857 ACGGATGGGTTTCTTGTGGTAA 59.893 45.455 0.00 0.00 0.00 2.85
663 664 5.385509 AAATTACGGATGGGTTTCTTGTG 57.614 39.130 0.00 0.00 0.00 3.33
673 674 6.320164 TGACTTTATCCCAAAATTACGGATGG 59.680 38.462 9.91 0.00 37.01 3.51
680 681 7.726291 TGGTTGAGTGACTTTATCCCAAAATTA 59.274 33.333 0.00 0.00 0.00 1.40
684 685 5.055265 TGGTTGAGTGACTTTATCCCAAA 57.945 39.130 0.00 0.00 0.00 3.28
691 692 8.100164 TGTATCATTGATGGTTGAGTGACTTTA 58.900 33.333 9.46 0.00 0.00 1.85
699 700 5.049886 CGATGGTGTATCATTGATGGTTGAG 60.050 44.000 9.46 0.00 35.43 3.02
708 709 3.070159 ACCTCCTCGATGGTGTATCATTG 59.930 47.826 4.42 0.00 35.43 2.82
713 714 4.480115 TCATAACCTCCTCGATGGTGTAT 58.520 43.478 5.80 4.48 36.57 2.29
745 746 5.569059 CCGATTAGTTGTTTCAAATGACAGC 59.431 40.000 0.00 0.00 0.00 4.40
747 748 6.565060 CGACCGATTAGTTGTTTCAAATGACA 60.565 38.462 0.00 0.00 0.00 3.58
748 749 5.788531 CGACCGATTAGTTGTTTCAAATGAC 59.211 40.000 0.00 0.00 0.00 3.06
749 750 5.106869 CCGACCGATTAGTTGTTTCAAATGA 60.107 40.000 0.00 0.00 0.00 2.57
768 769 4.265056 ACCACTTGGCCACCGACC 62.265 66.667 3.88 0.00 39.32 4.79
769 770 2.978010 CACCACTTGGCCACCGAC 60.978 66.667 3.88 0.00 39.32 4.79
803 804 1.001764 TGAGGAATGGCAGCTGTGG 60.002 57.895 16.64 0.00 0.00 4.17
813 814 6.748333 TTGAGAAATGTTAGCTGAGGAATG 57.252 37.500 0.00 0.00 0.00 2.67
814 815 7.765695 TTTTGAGAAATGTTAGCTGAGGAAT 57.234 32.000 0.00 0.00 0.00 3.01
815 816 7.581213 TTTTTGAGAAATGTTAGCTGAGGAA 57.419 32.000 0.00 0.00 0.00 3.36
816 817 7.765695 ATTTTTGAGAAATGTTAGCTGAGGA 57.234 32.000 0.00 0.00 0.00 3.71
817 818 9.912634 TTTATTTTTGAGAAATGTTAGCTGAGG 57.087 29.630 0.00 0.00 0.00 3.86
839 840 8.499967 GCGTTTGGGTGTCAATTTTTATTTTAT 58.500 29.630 0.00 0.00 34.98 1.40
840 841 7.041984 GGCGTTTGGGTGTCAATTTTTATTTTA 60.042 33.333 0.00 0.00 34.98 1.52
841 842 6.238511 GGCGTTTGGGTGTCAATTTTTATTTT 60.239 34.615 0.00 0.00 34.98 1.82
842 843 5.237561 GGCGTTTGGGTGTCAATTTTTATTT 59.762 36.000 0.00 0.00 34.98 1.40
843 844 4.752604 GGCGTTTGGGTGTCAATTTTTATT 59.247 37.500 0.00 0.00 34.98 1.40
844 845 4.311606 GGCGTTTGGGTGTCAATTTTTAT 58.688 39.130 0.00 0.00 34.98 1.40
845 846 3.718815 GGCGTTTGGGTGTCAATTTTTA 58.281 40.909 0.00 0.00 34.98 1.52
846 847 2.556257 GGCGTTTGGGTGTCAATTTTT 58.444 42.857 0.00 0.00 34.98 1.94
847 848 1.537135 CGGCGTTTGGGTGTCAATTTT 60.537 47.619 0.00 0.00 34.98 1.82
852 853 4.939368 CCCGGCGTTTGGGTGTCA 62.939 66.667 6.01 0.00 42.07 3.58
869 870 5.819825 AGGAACTCTGTCTGTTTGTTTTC 57.180 39.130 0.00 0.00 0.00 2.29
930 932 3.699894 CTCCTCGGTGTGCCTGCT 61.700 66.667 0.00 0.00 0.00 4.24
932 934 4.767255 GGCTCCTCGGTGTGCCTG 62.767 72.222 9.87 0.00 41.92 4.85
936 938 3.314331 AGGTGGCTCCTCGGTGTG 61.314 66.667 1.37 0.00 44.42 3.82
949 951 2.303022 TGGAGAGGTTTAAGCTCAGGTG 59.697 50.000 23.43 0.00 44.69 4.00
1313 1315 2.361104 CCCCCGAACACCACCATG 60.361 66.667 0.00 0.00 0.00 3.66
1314 1316 4.360405 GCCCCCGAACACCACCAT 62.360 66.667 0.00 0.00 0.00 3.55
1524 1526 4.043168 CCGTGACGGCTTTTCTGT 57.957 55.556 12.53 0.00 41.17 3.41
1536 1538 0.896940 AGCGAGTTACCCTTCCGTGA 60.897 55.000 0.00 0.00 0.00 4.35
1545 1547 2.218759 CGACATGCATAAGCGAGTTACC 59.781 50.000 0.00 0.00 46.23 2.85
1555 1557 2.677836 GCCTTTCTGACGACATGCATAA 59.322 45.455 0.00 0.00 0.00 1.90
1568 1570 4.279169 TGAATTTCTGACAAGGCCTTTCTG 59.721 41.667 17.61 18.79 0.00 3.02
1581 1583 7.969690 AGAGGAGTCTATTCTGAATTTCTGA 57.030 36.000 8.38 2.19 0.00 3.27
1624 1629 2.160417 CCGCTGTCCTGATCTTTTTGAC 59.840 50.000 0.00 0.00 0.00 3.18
1655 1661 3.322254 GTCTGTTCTTCTCTTGGAGGACA 59.678 47.826 0.00 0.00 29.54 4.02
1656 1662 3.576550 AGTCTGTTCTTCTCTTGGAGGAC 59.423 47.826 0.00 0.00 29.54 3.85
1854 2658 7.478667 CAGTTCTGTTTATATTCGTTTCTGCAC 59.521 37.037 0.00 0.00 0.00 4.57
1859 2663 8.056571 CCGATCAGTTCTGTTTATATTCGTTTC 58.943 37.037 0.00 0.00 0.00 2.78
1907 3908 9.734620 CAACTAACATGAACTCAAAAGATTTGA 57.265 29.630 0.00 5.50 0.00 2.69
1912 3913 8.958119 ACTACAACTAACATGAACTCAAAAGA 57.042 30.769 0.00 0.00 0.00 2.52
1933 3934 5.661759 TCCCCCATCTTCTCTAGAAAACTAC 59.338 44.000 0.00 0.00 36.22 2.73
1954 3956 0.534873 GCTGTCACTCTCTCCTTCCC 59.465 60.000 0.00 0.00 0.00 3.97
1997 4107 1.610522 ACCGTCGTGTAAGCAGTAAGT 59.389 47.619 0.00 0.00 0.00 2.24
2066 4184 4.932146 ACAACTAGCTGCGAAATGTTTTT 58.068 34.783 0.00 0.00 0.00 1.94
2081 4199 6.146347 GCCAGTCTCTTAAACTCAACAACTAG 59.854 42.308 0.00 0.00 0.00 2.57
2139 4267 1.349259 ATAAGCCGAACACGACGTGC 61.349 55.000 27.11 13.29 36.98 5.34
2170 4298 3.063997 CGTGAATAATGGTGGAGTTCAGC 59.936 47.826 0.00 0.00 43.68 4.26
2190 4318 4.679662 CTGATACTCCGAATGGTAAACGT 58.320 43.478 0.00 0.00 36.30 3.99
2247 4375 1.075970 ATCCTGCCTACCTCGAGCA 60.076 57.895 6.99 0.85 34.79 4.26
2298 4440 0.317854 GTGAAAGCAGGAAACCGTGC 60.318 55.000 0.00 0.00 43.53 5.34
2300 4442 1.981256 ATGTGAAAGCAGGAAACCGT 58.019 45.000 0.00 0.00 0.00 4.83
2314 4456 4.582240 AGACAGAGATCGATGCTTATGTGA 59.418 41.667 0.54 0.00 0.00 3.58
2319 4461 4.455606 TGAGAGACAGAGATCGATGCTTA 58.544 43.478 0.54 0.00 0.00 3.09
2346 4488 3.543680 AGTGAGAAACCGGTATCATGG 57.456 47.619 8.00 0.00 0.00 3.66
2347 4489 8.833231 AATTATAGTGAGAAACCGGTATCATG 57.167 34.615 8.00 0.00 0.00 3.07
2348 4490 9.490379 GAAATTATAGTGAGAAACCGGTATCAT 57.510 33.333 8.00 6.12 0.00 2.45
2349 4491 8.701895 AGAAATTATAGTGAGAAACCGGTATCA 58.298 33.333 8.00 10.48 0.00 2.15
2353 4495 9.978044 GTATAGAAATTATAGTGAGAAACCGGT 57.022 33.333 0.00 0.00 0.00 5.28
2354 4496 9.976511 TGTATAGAAATTATAGTGAGAAACCGG 57.023 33.333 0.00 0.00 0.00 5.28
2372 4514 9.424319 GTTCATCACAGAGTTTCTTGTATAGAA 57.576 33.333 0.00 0.00 41.11 2.10
2373 4515 8.585018 TGTTCATCACAGAGTTTCTTGTATAGA 58.415 33.333 0.00 0.00 0.00 1.98
2374 4516 8.763049 TGTTCATCACAGAGTTTCTTGTATAG 57.237 34.615 0.00 0.00 0.00 1.31
2375 4517 9.554395 TTTGTTCATCACAGAGTTTCTTGTATA 57.446 29.630 0.00 0.00 36.48 1.47
2376 4518 8.450578 TTTGTTCATCACAGAGTTTCTTGTAT 57.549 30.769 0.00 0.00 36.48 2.29
2377 4519 7.857734 TTTGTTCATCACAGAGTTTCTTGTA 57.142 32.000 0.00 0.00 36.48 2.41
2378 4520 6.757897 TTTGTTCATCACAGAGTTTCTTGT 57.242 33.333 0.00 0.00 36.48 3.16
2379 4521 8.638685 ATTTTTGTTCATCACAGAGTTTCTTG 57.361 30.769 0.00 0.00 36.48 3.02
2380 4522 9.956720 CTATTTTTGTTCATCACAGAGTTTCTT 57.043 29.630 0.00 0.00 36.48 2.52
2381 4523 9.125026 ACTATTTTTGTTCATCACAGAGTTTCT 57.875 29.630 0.00 0.00 36.48 2.52
2382 4524 9.736023 AACTATTTTTGTTCATCACAGAGTTTC 57.264 29.630 0.00 0.00 36.48 2.78
2384 4526 9.520204 CAAACTATTTTTGTTCATCACAGAGTT 57.480 29.630 0.00 0.00 36.48 3.01
2385 4527 7.649306 GCAAACTATTTTTGTTCATCACAGAGT 59.351 33.333 0.00 0.00 36.48 3.24
2386 4528 7.648908 TGCAAACTATTTTTGTTCATCACAGAG 59.351 33.333 0.00 0.00 36.48 3.35
2387 4529 7.434897 GTGCAAACTATTTTTGTTCATCACAGA 59.565 33.333 0.00 0.00 36.48 3.41
2388 4530 7.306749 GGTGCAAACTATTTTTGTTCATCACAG 60.307 37.037 0.00 0.00 36.48 3.66
2389 4531 6.478344 GGTGCAAACTATTTTTGTTCATCACA 59.522 34.615 0.00 0.00 0.00 3.58
2390 4532 6.478344 TGGTGCAAACTATTTTTGTTCATCAC 59.522 34.615 0.00 0.00 0.00 3.06
2391 4533 6.577103 TGGTGCAAACTATTTTTGTTCATCA 58.423 32.000 0.00 0.00 0.00 3.07
2392 4534 6.346838 GCTGGTGCAAACTATTTTTGTTCATC 60.347 38.462 0.00 0.00 39.41 2.92
2393 4535 5.466393 GCTGGTGCAAACTATTTTTGTTCAT 59.534 36.000 0.00 0.00 39.41 2.57
2394 4536 4.808364 GCTGGTGCAAACTATTTTTGTTCA 59.192 37.500 0.00 0.00 39.41 3.18
2395 4537 5.049828 AGCTGGTGCAAACTATTTTTGTTC 58.950 37.500 0.00 0.00 42.74 3.18
2396 4538 4.810491 CAGCTGGTGCAAACTATTTTTGTT 59.190 37.500 5.57 0.00 42.74 2.83
2397 4539 4.141959 ACAGCTGGTGCAAACTATTTTTGT 60.142 37.500 19.93 0.00 42.74 2.83
2398 4540 4.209703 CACAGCTGGTGCAAACTATTTTTG 59.790 41.667 19.93 0.00 41.36 2.44
2399 4541 4.370917 CACAGCTGGTGCAAACTATTTTT 58.629 39.130 19.93 0.00 41.36 1.94
2400 4542 3.981211 CACAGCTGGTGCAAACTATTTT 58.019 40.909 19.93 0.00 41.36 1.82
2401 4543 3.648339 CACAGCTGGTGCAAACTATTT 57.352 42.857 19.93 0.00 41.36 1.40
2411 4553 6.635173 ACTCGATGAGTTACACAGCTGGTG 62.635 50.000 19.93 15.72 46.08 4.17
2412 4554 1.893137 TCGATGAGTTACACAGCTGGT 59.107 47.619 19.93 15.19 0.00 4.00
2413 4555 2.094494 ACTCGATGAGTTACACAGCTGG 60.094 50.000 19.93 9.66 40.28 4.85
2414 4556 2.919859 CACTCGATGAGTTACACAGCTG 59.080 50.000 13.48 13.48 41.37 4.24
2415 4557 2.094494 CCACTCGATGAGTTACACAGCT 60.094 50.000 0.00 0.00 41.37 4.24
2416 4558 2.094700 TCCACTCGATGAGTTACACAGC 60.095 50.000 0.00 0.00 41.37 4.40
2417 4559 3.191581 ACTCCACTCGATGAGTTACACAG 59.808 47.826 6.58 0.00 41.37 3.66
2418 4560 3.057526 CACTCCACTCGATGAGTTACACA 60.058 47.826 9.04 0.00 41.37 3.72
2419 4561 3.190744 TCACTCCACTCGATGAGTTACAC 59.809 47.826 9.04 0.00 41.37 2.90
2420 4562 3.190744 GTCACTCCACTCGATGAGTTACA 59.809 47.826 14.41 0.00 41.37 2.41
2421 4563 3.440872 AGTCACTCCACTCGATGAGTTAC 59.559 47.826 12.63 12.63 41.37 2.50
2422 4564 3.687125 AGTCACTCCACTCGATGAGTTA 58.313 45.455 9.04 1.04 41.37 2.24
2423 4565 2.490115 GAGTCACTCCACTCGATGAGTT 59.510 50.000 9.04 0.00 41.37 3.01
2424 4566 2.088423 GAGTCACTCCACTCGATGAGT 58.912 52.381 0.00 6.58 44.44 3.41
2425 4567 2.842208 GAGTCACTCCACTCGATGAG 57.158 55.000 0.00 5.49 33.74 2.90
2431 4573 1.214062 CTGCCGAGTCACTCCACTC 59.786 63.158 0.00 0.00 39.68 3.51
2432 4574 2.936912 GCTGCCGAGTCACTCCACT 61.937 63.158 0.00 0.00 0.00 4.00
2433 4575 2.433318 GCTGCCGAGTCACTCCAC 60.433 66.667 0.00 0.00 0.00 4.02
2434 4576 4.056125 CGCTGCCGAGTCACTCCA 62.056 66.667 0.00 0.00 36.29 3.86
2435 4577 3.282745 TTCGCTGCCGAGTCACTCC 62.283 63.158 0.00 0.00 45.35 3.85
2436 4578 1.803519 CTTCGCTGCCGAGTCACTC 60.804 63.158 0.00 0.00 45.35 3.51
2437 4579 2.206515 CTCTTCGCTGCCGAGTCACT 62.207 60.000 0.00 0.00 45.35 3.41
2438 4580 1.803519 CTCTTCGCTGCCGAGTCAC 60.804 63.158 0.00 0.00 45.35 3.67
2439 4581 2.568612 CTCTTCGCTGCCGAGTCA 59.431 61.111 0.00 0.00 45.35 3.41
2440 4582 2.202676 CCTCTTCGCTGCCGAGTC 60.203 66.667 0.00 0.00 45.35 3.36
2441 4583 2.992114 ACCTCTTCGCTGCCGAGT 60.992 61.111 0.00 0.00 45.35 4.18
2442 4584 2.507992 CACCTCTTCGCTGCCGAG 60.508 66.667 0.00 0.00 45.35 4.63
2443 4585 2.989253 TCACCTCTTCGCTGCCGA 60.989 61.111 0.00 0.00 42.66 5.54
2444 4586 2.507992 CTCACCTCTTCGCTGCCG 60.508 66.667 0.00 0.00 0.00 5.69
2445 4587 2.125350 CCTCACCTCTTCGCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
2446 4588 1.004440 AACCTCACCTCTTCGCTGC 60.004 57.895 0.00 0.00 0.00 5.25
2447 4589 0.034059 ACAACCTCACCTCTTCGCTG 59.966 55.000 0.00 0.00 0.00 5.18
2448 4590 1.546476 CTACAACCTCACCTCTTCGCT 59.454 52.381 0.00 0.00 0.00 4.93
2449 4591 1.544691 TCTACAACCTCACCTCTTCGC 59.455 52.381 0.00 0.00 0.00 4.70
2450 4592 3.082548 TCTCTACAACCTCACCTCTTCG 58.917 50.000 0.00 0.00 0.00 3.79
2451 4593 3.827302 TGTCTCTACAACCTCACCTCTTC 59.173 47.826 0.00 0.00 30.91 2.87
2452 4594 3.829601 CTGTCTCTACAACCTCACCTCTT 59.170 47.826 0.00 0.00 34.49 2.85
2453 4595 3.181427 ACTGTCTCTACAACCTCACCTCT 60.181 47.826 0.00 0.00 34.49 3.69
2454 4596 3.158676 ACTGTCTCTACAACCTCACCTC 58.841 50.000 0.00 0.00 34.49 3.85
2455 4597 3.158676 GACTGTCTCTACAACCTCACCT 58.841 50.000 0.00 0.00 34.49 4.00
2456 4598 2.891580 TGACTGTCTCTACAACCTCACC 59.108 50.000 9.51 0.00 34.49 4.02
2457 4599 4.489810 CATGACTGTCTCTACAACCTCAC 58.510 47.826 9.51 0.00 34.49 3.51
2458 4600 3.511540 CCATGACTGTCTCTACAACCTCA 59.488 47.826 9.51 0.00 34.49 3.86
2459 4601 3.118956 CCCATGACTGTCTCTACAACCTC 60.119 52.174 9.51 0.00 34.49 3.85
2460 4602 2.834549 CCCATGACTGTCTCTACAACCT 59.165 50.000 9.51 0.00 34.49 3.50
2461 4603 2.678190 GCCCATGACTGTCTCTACAACC 60.678 54.545 9.51 0.00 34.49 3.77
2462 4604 2.028112 TGCCCATGACTGTCTCTACAAC 60.028 50.000 9.51 0.00 34.49 3.32
2463 4605 2.256306 TGCCCATGACTGTCTCTACAA 58.744 47.619 9.51 0.00 34.49 2.41
2464 4606 1.937191 TGCCCATGACTGTCTCTACA 58.063 50.000 9.51 0.00 0.00 2.74
2465 4607 2.224161 GGATGCCCATGACTGTCTCTAC 60.224 54.545 9.51 0.00 0.00 2.59
2466 4608 2.042464 GGATGCCCATGACTGTCTCTA 58.958 52.381 9.51 0.00 0.00 2.43
2467 4609 0.835941 GGATGCCCATGACTGTCTCT 59.164 55.000 9.51 0.00 0.00 3.10
2468 4610 0.543277 TGGATGCCCATGACTGTCTC 59.457 55.000 9.51 0.00 37.58 3.36
2469 4611 2.700783 TGGATGCCCATGACTGTCT 58.299 52.632 9.51 0.00 37.58 3.41
2479 4621 3.571401 CCTCTTTCATTGTATGGATGCCC 59.429 47.826 0.00 0.00 0.00 5.36
2480 4622 4.464008 TCCTCTTTCATTGTATGGATGCC 58.536 43.478 0.00 0.00 0.00 4.40
2481 4623 6.645790 AATCCTCTTTCATTGTATGGATGC 57.354 37.500 0.00 0.00 33.68 3.91
2484 4626 9.135189 CCAAATAATCCTCTTTCATTGTATGGA 57.865 33.333 0.00 0.00 0.00 3.41
2485 4627 8.917088 ACCAAATAATCCTCTTTCATTGTATGG 58.083 33.333 0.00 0.00 0.00 2.74
2488 4630 9.104965 CGTACCAAATAATCCTCTTTCATTGTA 57.895 33.333 0.00 0.00 0.00 2.41
2489 4631 7.827236 TCGTACCAAATAATCCTCTTTCATTGT 59.173 33.333 0.00 0.00 0.00 2.71
2490 4632 8.122952 GTCGTACCAAATAATCCTCTTTCATTG 58.877 37.037 0.00 0.00 0.00 2.82
2491 4633 8.047310 AGTCGTACCAAATAATCCTCTTTCATT 58.953 33.333 0.00 0.00 0.00 2.57
2492 4634 7.495934 CAGTCGTACCAAATAATCCTCTTTCAT 59.504 37.037 0.00 0.00 0.00 2.57
2493 4635 6.816640 CAGTCGTACCAAATAATCCTCTTTCA 59.183 38.462 0.00 0.00 0.00 2.69
2494 4636 7.039882 TCAGTCGTACCAAATAATCCTCTTTC 58.960 38.462 0.00 0.00 0.00 2.62
2495 4637 6.942976 TCAGTCGTACCAAATAATCCTCTTT 58.057 36.000 0.00 0.00 0.00 2.52
2496 4638 6.380274 TCTCAGTCGTACCAAATAATCCTCTT 59.620 38.462 0.00 0.00 0.00 2.85
2497 4639 5.892119 TCTCAGTCGTACCAAATAATCCTCT 59.108 40.000 0.00 0.00 0.00 3.69
2498 4640 6.039493 TCTCTCAGTCGTACCAAATAATCCTC 59.961 42.308 0.00 0.00 0.00 3.71
2499 4641 5.892119 TCTCTCAGTCGTACCAAATAATCCT 59.108 40.000 0.00 0.00 0.00 3.24
2500 4642 5.978322 GTCTCTCAGTCGTACCAAATAATCC 59.022 44.000 0.00 0.00 0.00 3.01
2501 4643 5.978322 GGTCTCTCAGTCGTACCAAATAATC 59.022 44.000 0.00 0.00 0.00 1.75
2502 4644 5.657302 AGGTCTCTCAGTCGTACCAAATAAT 59.343 40.000 0.00 0.00 32.43 1.28
2503 4645 5.014858 AGGTCTCTCAGTCGTACCAAATAA 58.985 41.667 0.00 0.00 32.43 1.40
2504 4646 4.597004 AGGTCTCTCAGTCGTACCAAATA 58.403 43.478 0.00 0.00 32.43 1.40
2505 4647 3.432378 AGGTCTCTCAGTCGTACCAAAT 58.568 45.455 0.00 0.00 32.43 2.32
2506 4648 2.872732 AGGTCTCTCAGTCGTACCAAA 58.127 47.619 0.00 0.00 32.43 3.28
2507 4649 2.581216 AGGTCTCTCAGTCGTACCAA 57.419 50.000 0.00 0.00 32.43 3.67
2508 4650 2.581216 AAGGTCTCTCAGTCGTACCA 57.419 50.000 0.00 0.00 32.43 3.25
2509 4651 3.938289 AAAAGGTCTCTCAGTCGTACC 57.062 47.619 0.00 0.00 0.00 3.34
2510 4652 5.123805 AGAAAAAGGTCTCTCAGTCGTAC 57.876 43.478 0.00 0.00 0.00 3.67
2511 4653 5.786264 AAGAAAAAGGTCTCTCAGTCGTA 57.214 39.130 0.00 0.00 0.00 3.43
2512 4654 4.674281 AAGAAAAAGGTCTCTCAGTCGT 57.326 40.909 0.00 0.00 0.00 4.34
2513 4655 5.755861 AGAAAAGAAAAAGGTCTCTCAGTCG 59.244 40.000 0.00 0.00 0.00 4.18
2514 4656 7.561021 AAGAAAAGAAAAAGGTCTCTCAGTC 57.439 36.000 0.00 0.00 0.00 3.51
2515 4657 9.061435 CATAAGAAAAGAAAAAGGTCTCTCAGT 57.939 33.333 0.00 0.00 0.00 3.41
2516 4658 8.020244 GCATAAGAAAAGAAAAAGGTCTCTCAG 58.980 37.037 0.00 0.00 0.00 3.35
2517 4659 7.040409 GGCATAAGAAAAGAAAAAGGTCTCTCA 60.040 37.037 0.00 0.00 0.00 3.27
2518 4660 7.309177 GGCATAAGAAAAGAAAAAGGTCTCTC 58.691 38.462 0.00 0.00 0.00 3.20
2519 4661 6.209589 GGGCATAAGAAAAGAAAAAGGTCTCT 59.790 38.462 0.00 0.00 0.00 3.10
2520 4662 6.015434 TGGGCATAAGAAAAGAAAAAGGTCTC 60.015 38.462 0.00 0.00 0.00 3.36
2521 4663 5.838521 TGGGCATAAGAAAAGAAAAAGGTCT 59.161 36.000 0.00 0.00 0.00 3.85
2522 4664 5.926542 GTGGGCATAAGAAAAGAAAAAGGTC 59.073 40.000 0.00 0.00 0.00 3.85
2523 4665 5.365314 TGTGGGCATAAGAAAAGAAAAAGGT 59.635 36.000 0.00 0.00 0.00 3.50
2524 4666 5.852827 TGTGGGCATAAGAAAAGAAAAAGG 58.147 37.500 0.00 0.00 0.00 3.11
2525 4667 7.967890 AATGTGGGCATAAGAAAAGAAAAAG 57.032 32.000 0.00 0.00 34.39 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.