Multiple sequence alignment - TraesCS1A01G069000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G069000 chr1A 100.000 2375 0 0 1 2375 50632948 50630574 0.000000e+00 4386
1 TraesCS1A01G069000 chr1A 95.460 2291 77 11 1 2283 575427295 575429566 0.000000e+00 3629
2 TraesCS1A01G069000 chr5A 96.422 2292 68 7 1 2286 501876998 501879281 0.000000e+00 3766
3 TraesCS1A01G069000 chr5A 95.901 2293 75 11 1 2286 133827289 133829569 0.000000e+00 3696
4 TraesCS1A01G069000 chr3A 95.904 2295 76 9 1 2285 513304543 513306829 0.000000e+00 3701
5 TraesCS1A01G069000 chr4A 95.984 2291 67 9 1 2285 429496369 429498640 0.000000e+00 3698
6 TraesCS1A01G069000 chr4A 95.683 2293 81 11 1 2285 52462302 52460020 0.000000e+00 3670
7 TraesCS1A01G069000 chr4A 95.296 2296 78 14 1 2286 490349406 490351681 0.000000e+00 3615
8 TraesCS1A01G069000 chr4A 96.745 1567 41 5 1 1562 523839870 523841431 0.000000e+00 2603
9 TraesCS1A01G069000 chr4A 95.785 783 28 5 1504 2285 326295911 326295133 0.000000e+00 1258
10 TraesCS1A01G069000 chr7A 96.160 1953 62 7 1 1946 153030969 153029023 0.000000e+00 3179
11 TraesCS1A01G069000 chr1D 92.845 601 23 3 855 1454 417113875 417114456 0.000000e+00 854
12 TraesCS1A01G069000 chr1D 96.078 102 2 2 2276 2375 194765756 194765857 5.250000e-37 165
13 TraesCS1A01G069000 chr1D 96.078 102 2 2 2276 2375 274165907 274166008 5.250000e-37 165
14 TraesCS1A01G069000 chr3D 92.180 601 26 9 855 1454 330464172 330463592 0.000000e+00 830
15 TraesCS1A01G069000 chr2D 93.870 522 23 2 858 1378 94085571 94085058 0.000000e+00 778
16 TraesCS1A01G069000 chr2D 97.059 102 1 2 2276 2375 119207516 119207617 1.130000e-38 171
17 TraesCS1A01G069000 chr6D 89.351 601 33 5 855 1454 46519804 46519234 0.000000e+00 726
18 TraesCS1A01G069000 chr7D 97.059 102 1 2 2276 2375 405205404 405205505 1.130000e-38 171
19 TraesCS1A01G069000 chr7D 97.059 102 1 2 2276 2375 430629864 430629763 1.130000e-38 171
20 TraesCS1A01G069000 chr5B 97.059 102 1 2 2276 2375 55748015 55748116 1.130000e-38 171
21 TraesCS1A01G069000 chr2A 97.059 102 1 2 2276 2375 686503213 686503314 1.130000e-38 171
22 TraesCS1A01G069000 chr5D 96.078 102 2 2 2276 2375 207460995 207460894 5.250000e-37 165
23 TraesCS1A01G069000 chr5D 96.078 102 2 2 2276 2375 231049612 231049511 5.250000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G069000 chr1A 50630574 50632948 2374 True 4386 4386 100.000 1 2375 1 chr1A.!!$R1 2374
1 TraesCS1A01G069000 chr1A 575427295 575429566 2271 False 3629 3629 95.460 1 2283 1 chr1A.!!$F1 2282
2 TraesCS1A01G069000 chr5A 501876998 501879281 2283 False 3766 3766 96.422 1 2286 1 chr5A.!!$F2 2285
3 TraesCS1A01G069000 chr5A 133827289 133829569 2280 False 3696 3696 95.901 1 2286 1 chr5A.!!$F1 2285
4 TraesCS1A01G069000 chr3A 513304543 513306829 2286 False 3701 3701 95.904 1 2285 1 chr3A.!!$F1 2284
5 TraesCS1A01G069000 chr4A 429496369 429498640 2271 False 3698 3698 95.984 1 2285 1 chr4A.!!$F1 2284
6 TraesCS1A01G069000 chr4A 52460020 52462302 2282 True 3670 3670 95.683 1 2285 1 chr4A.!!$R1 2284
7 TraesCS1A01G069000 chr4A 490349406 490351681 2275 False 3615 3615 95.296 1 2286 1 chr4A.!!$F2 2285
8 TraesCS1A01G069000 chr4A 523839870 523841431 1561 False 2603 2603 96.745 1 1562 1 chr4A.!!$F3 1561
9 TraesCS1A01G069000 chr4A 326295133 326295911 778 True 1258 1258 95.785 1504 2285 1 chr4A.!!$R2 781
10 TraesCS1A01G069000 chr7A 153029023 153030969 1946 True 3179 3179 96.160 1 1946 1 chr7A.!!$R1 1945
11 TraesCS1A01G069000 chr1D 417113875 417114456 581 False 854 854 92.845 855 1454 1 chr1D.!!$F3 599
12 TraesCS1A01G069000 chr3D 330463592 330464172 580 True 830 830 92.180 855 1454 1 chr3D.!!$R1 599
13 TraesCS1A01G069000 chr2D 94085058 94085571 513 True 778 778 93.870 858 1378 1 chr2D.!!$R1 520
14 TraesCS1A01G069000 chr6D 46519234 46519804 570 True 726 726 89.351 855 1454 1 chr6D.!!$R1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 472 0.472734 AAGGGTGAGGAGCTGTCTGT 60.473 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 2325 0.395312 CCACTGTTGGGGAACGTAGT 59.605 55.0 0.0 0.0 41.04 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.515272 AATATTCAAAGAACAGACGCCATT 57.485 33.333 0.00 0.00 0.00 3.16
75 80 1.066716 TGATACCGTAGCCGCAAAGTT 60.067 47.619 0.00 0.00 0.00 2.66
124 129 1.188863 GGATGGTGAATGGCAAGCTT 58.811 50.000 0.00 0.00 0.00 3.74
169 174 2.565841 GACACAAGGTTTGTCTCTGCT 58.434 47.619 0.00 0.00 43.23 4.24
205 210 5.694231 TTATGTTCTGCACATGATATGCC 57.306 39.130 0.00 0.00 46.37 4.40
373 378 3.838903 AGAGACCTTACCGTTTGATCCTT 59.161 43.478 0.00 0.00 0.00 3.36
380 385 6.373495 ACCTTACCGTTTGATCCTTATTGAAC 59.627 38.462 0.00 0.00 0.00 3.18
467 472 0.472734 AAGGGTGAGGAGCTGTCTGT 60.473 55.000 0.00 0.00 0.00 3.41
574 579 3.555586 GCTTTGCCCTGTTTGATTCACAT 60.556 43.478 0.00 0.00 0.00 3.21
993 1000 7.059156 GCCTATCATTTTCCTCCATATGCTAT 58.941 38.462 0.00 0.00 0.00 2.97
1054 1062 2.289694 GGTGAAGAGCCAAAGTCTGCTA 60.290 50.000 0.00 0.00 38.11 3.49
1254 1262 3.554934 AGAATTGGCGGCAATCAAGATA 58.445 40.909 33.85 7.99 0.00 1.98
1388 1396 3.552890 GCAGTTTGATGGTCTTTGAACCC 60.553 47.826 0.00 0.00 38.65 4.11
1412 1420 4.201910 GCTGTGCAGTTTGTCTTTGAACTA 60.202 41.667 0.00 0.00 34.52 2.24
1413 1421 5.676079 GCTGTGCAGTTTGTCTTTGAACTAA 60.676 40.000 0.00 0.00 34.52 2.24
1414 1422 5.636837 TGTGCAGTTTGTCTTTGAACTAAC 58.363 37.500 0.00 0.00 34.52 2.34
1415 1423 5.414454 TGTGCAGTTTGTCTTTGAACTAACT 59.586 36.000 0.00 0.00 43.04 2.24
1467 1475 6.183360 CGTGAACTTATGTGGATCTGGTAGTA 60.183 42.308 0.00 0.00 0.00 1.82
1577 1585 3.012518 GGATCACTTGTGGATCTTGTGG 58.987 50.000 0.00 0.00 40.74 4.17
1580 1588 2.437651 TCACTTGTGGATCTTGTGGACA 59.562 45.455 0.64 0.00 0.00 4.02
2005 2024 4.116961 CGGGCTGATTCTATTTTACGACA 58.883 43.478 0.00 0.00 0.00 4.35
2028 2047 9.260002 GACATTTTCATTTGGTTGTAATTCTGT 57.740 29.630 0.00 0.00 0.00 3.41
2056 2075 0.107508 CTTGCCACGGTGGATCTGAT 60.108 55.000 30.65 0.00 40.96 2.90
2086 2105 3.071479 GTCGGATTGCTAGTGACCAAAA 58.929 45.455 0.00 0.00 0.00 2.44
2094 2113 3.181491 TGCTAGTGACCAAAAACAGTTGC 60.181 43.478 0.00 0.00 38.16 4.17
2114 2133 4.171005 TGCTCGTTAAATCTACGACCTTG 58.829 43.478 0.00 0.00 42.51 3.61
2116 2135 4.624452 GCTCGTTAAATCTACGACCTTGTT 59.376 41.667 0.00 0.00 42.51 2.83
2165 2185 4.003648 CCAGAAGAAAGGTCGCTAATGTT 58.996 43.478 0.00 0.00 0.00 2.71
2251 2271 7.825331 TTTGTGACCATTTAGTGACCAATAA 57.175 32.000 0.00 0.00 0.00 1.40
2286 2306 7.719633 ACAAGTTGACATATTTCTTGTAGTGGT 59.280 33.333 10.54 0.00 44.11 4.16
2287 2307 9.214957 CAAGTTGACATATTTCTTGTAGTGGTA 57.785 33.333 0.00 0.00 33.27 3.25
2288 2308 9.436957 AAGTTGACATATTTCTTGTAGTGGTAG 57.563 33.333 0.00 0.00 0.00 3.18
2289 2309 8.041323 AGTTGACATATTTCTTGTAGTGGTAGG 58.959 37.037 0.00 0.00 0.00 3.18
2290 2310 7.727578 TGACATATTTCTTGTAGTGGTAGGA 57.272 36.000 0.00 0.00 0.00 2.94
2291 2311 8.141298 TGACATATTTCTTGTAGTGGTAGGAA 57.859 34.615 0.00 0.00 0.00 3.36
2292 2312 8.768397 TGACATATTTCTTGTAGTGGTAGGAAT 58.232 33.333 0.00 0.00 0.00 3.01
2293 2313 9.614792 GACATATTTCTTGTAGTGGTAGGAATT 57.385 33.333 0.00 0.00 0.00 2.17
2294 2314 9.975218 ACATATTTCTTGTAGTGGTAGGAATTT 57.025 29.630 0.00 0.00 0.00 1.82
2317 2337 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
2318 2338 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
2319 2339 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
2320 2340 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
2321 2341 4.998672 TGAAATTACTACGTTCCCCAACAG 59.001 41.667 0.00 0.00 32.14 3.16
2322 2342 4.628963 AATTACTACGTTCCCCAACAGT 57.371 40.909 0.00 0.00 32.14 3.55
2323 2343 3.389925 TTACTACGTTCCCCAACAGTG 57.610 47.619 0.00 0.00 32.14 3.66
2324 2344 0.395312 ACTACGTTCCCCAACAGTGG 59.605 55.000 0.00 0.00 45.53 4.00
2325 2345 0.953960 CTACGTTCCCCAACAGTGGC 60.954 60.000 0.00 0.00 44.46 5.01
2326 2346 1.697082 TACGTTCCCCAACAGTGGCA 61.697 55.000 0.00 0.00 44.46 4.92
2327 2347 1.603455 CGTTCCCCAACAGTGGCAT 60.603 57.895 0.00 0.00 44.46 4.40
2328 2348 1.586154 CGTTCCCCAACAGTGGCATC 61.586 60.000 0.00 0.00 44.46 3.91
2329 2349 1.076549 TTCCCCAACAGTGGCATCC 59.923 57.895 0.00 0.00 44.46 3.51
2330 2350 2.751436 CCCCAACAGTGGCATCCG 60.751 66.667 0.00 0.00 44.46 4.18
2331 2351 2.350895 CCCAACAGTGGCATCCGA 59.649 61.111 0.00 0.00 44.46 4.55
2332 2352 1.746615 CCCAACAGTGGCATCCGAG 60.747 63.158 0.00 0.00 44.46 4.63
2333 2353 2.401766 CCAACAGTGGCATCCGAGC 61.402 63.158 0.00 0.00 38.35 5.03
2341 2361 4.002797 GCATCCGAGCCAGGTTTT 57.997 55.556 0.00 0.00 0.00 2.43
2342 2362 3.168773 GCATCCGAGCCAGGTTTTA 57.831 52.632 0.00 0.00 0.00 1.52
2343 2363 1.680338 GCATCCGAGCCAGGTTTTAT 58.320 50.000 0.00 0.00 0.00 1.40
2344 2364 1.334869 GCATCCGAGCCAGGTTTTATG 59.665 52.381 0.00 0.00 0.00 1.90
2345 2365 1.334869 CATCCGAGCCAGGTTTTATGC 59.665 52.381 0.00 0.00 0.00 3.14
2346 2366 0.742990 TCCGAGCCAGGTTTTATGCG 60.743 55.000 0.00 0.00 0.00 4.73
2347 2367 1.024579 CCGAGCCAGGTTTTATGCGT 61.025 55.000 0.00 0.00 0.00 5.24
2348 2368 0.802494 CGAGCCAGGTTTTATGCGTT 59.198 50.000 0.00 0.00 0.00 4.84
2349 2369 1.465689 CGAGCCAGGTTTTATGCGTTG 60.466 52.381 0.00 0.00 0.00 4.10
2350 2370 1.810151 GAGCCAGGTTTTATGCGTTGA 59.190 47.619 0.00 0.00 0.00 3.18
2351 2371 2.423538 GAGCCAGGTTTTATGCGTTGAT 59.576 45.455 0.00 0.00 0.00 2.57
2352 2372 2.164219 AGCCAGGTTTTATGCGTTGATG 59.836 45.455 0.00 0.00 0.00 3.07
2353 2373 2.094752 GCCAGGTTTTATGCGTTGATGT 60.095 45.455 0.00 0.00 0.00 3.06
2354 2374 3.613910 GCCAGGTTTTATGCGTTGATGTT 60.614 43.478 0.00 0.00 0.00 2.71
2355 2375 4.380023 GCCAGGTTTTATGCGTTGATGTTA 60.380 41.667 0.00 0.00 0.00 2.41
2356 2376 5.678616 GCCAGGTTTTATGCGTTGATGTTAT 60.679 40.000 0.00 0.00 0.00 1.89
2357 2377 5.743398 CCAGGTTTTATGCGTTGATGTTATG 59.257 40.000 0.00 0.00 0.00 1.90
2358 2378 5.229887 CAGGTTTTATGCGTTGATGTTATGC 59.770 40.000 0.00 0.00 0.00 3.14
2359 2379 5.098893 GGTTTTATGCGTTGATGTTATGCA 58.901 37.500 0.00 0.00 41.36 3.96
2360 2380 5.004345 GGTTTTATGCGTTGATGTTATGCAC 59.996 40.000 0.00 0.00 40.07 4.57
2361 2381 2.456942 ATGCGTTGATGTTATGCACG 57.543 45.000 0.00 0.00 40.07 5.34
2362 2382 1.433534 TGCGTTGATGTTATGCACGA 58.566 45.000 0.00 0.00 32.86 4.35
2363 2383 1.393196 TGCGTTGATGTTATGCACGAG 59.607 47.619 0.00 0.00 32.86 4.18
2364 2384 1.393539 GCGTTGATGTTATGCACGAGT 59.606 47.619 0.00 0.00 0.00 4.18
2365 2385 2.601314 GCGTTGATGTTATGCACGAGTA 59.399 45.455 0.00 0.00 0.00 2.59
2366 2386 3.301835 GCGTTGATGTTATGCACGAGTAG 60.302 47.826 0.00 0.00 0.00 2.57
2367 2387 4.102649 CGTTGATGTTATGCACGAGTAGA 58.897 43.478 0.00 0.00 0.00 2.59
2368 2388 4.561213 CGTTGATGTTATGCACGAGTAGAA 59.439 41.667 0.00 0.00 0.00 2.10
2369 2389 5.498700 CGTTGATGTTATGCACGAGTAGAAC 60.499 44.000 1.83 1.83 33.04 3.01
2370 2390 5.066968 TGATGTTATGCACGAGTAGAACA 57.933 39.130 12.65 12.65 43.73 3.18
2371 2391 4.862574 TGATGTTATGCACGAGTAGAACAC 59.137 41.667 12.55 8.14 42.71 3.32
2372 2392 4.245845 TGTTATGCACGAGTAGAACACA 57.754 40.909 7.00 0.00 36.80 3.72
2373 2393 4.623002 TGTTATGCACGAGTAGAACACAA 58.377 39.130 7.00 0.00 36.80 3.33
2374 2394 4.684242 TGTTATGCACGAGTAGAACACAAG 59.316 41.667 7.00 0.00 36.80 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.246311 CGTCTGTTCTTTGAATATTTCTGCAT 58.754 34.615 0.00 0.00 0.00 3.96
75 80 1.138266 GGCACCGGAGACTTAATGCTA 59.862 52.381 9.46 0.00 33.57 3.49
124 129 1.906574 GGTAGACCACATCTCCACCAA 59.093 52.381 0.00 0.00 36.43 3.67
169 174 6.760298 TGCAGAACATAAAGCATCAAACAAAA 59.240 30.769 0.00 0.00 31.05 2.44
373 378 8.579006 AGCAAGAATCAGAAATGTTGTTCAATA 58.421 29.630 0.00 0.00 0.00 1.90
380 385 8.857216 GTTATTCAGCAAGAATCAGAAATGTTG 58.143 33.333 7.57 0.00 43.42 3.33
467 472 3.572255 GGTGGCCTTAAACAAGTCAATCA 59.428 43.478 3.32 0.00 0.00 2.57
574 579 3.423749 TCATCAAAGCATCAAAGCTGGA 58.576 40.909 0.00 0.00 45.89 3.86
1054 1062 5.530915 TGAGGACTTGTTCGACAATTTCAAT 59.469 36.000 0.00 0.00 37.48 2.57
1254 1262 3.691609 CAGCTTTAGATTCTTCCGCCTTT 59.308 43.478 0.00 0.00 0.00 3.11
1388 1396 1.063912 TCAAAGACAAACTGCACAGCG 59.936 47.619 0.00 0.00 0.00 5.18
1412 1420 7.152645 ACTACGACATAACTTCACATCAAGTT 58.847 34.615 4.16 4.16 46.27 2.66
1413 1421 6.688578 ACTACGACATAACTTCACATCAAGT 58.311 36.000 0.00 0.00 38.30 3.16
1414 1422 7.432545 CCTACTACGACATAACTTCACATCAAG 59.567 40.741 0.00 0.00 0.00 3.02
1415 1423 7.094075 ACCTACTACGACATAACTTCACATCAA 60.094 37.037 0.00 0.00 0.00 2.57
1467 1475 5.789643 ACAAACACTACCAGATGCAAAAT 57.210 34.783 0.00 0.00 0.00 1.82
1577 1585 6.017109 CACATAACTATAAACAGGCCCATGTC 60.017 42.308 0.00 0.00 31.50 3.06
1580 1588 5.133660 TCCACATAACTATAAACAGGCCCAT 59.866 40.000 0.00 0.00 0.00 4.00
1676 1684 4.740902 AGTCTAATTCTTGTTTGGGCCTT 58.259 39.130 4.53 0.00 0.00 4.35
1810 1823 3.182887 TCCACTATTGTTTTGGGCCAT 57.817 42.857 7.26 0.00 0.00 4.40
1841 1854 6.351626 GGAATGGAGCCTTTTTCTGATGAATT 60.352 38.462 0.00 0.00 31.56 2.17
2018 2037 4.154737 GCAAGCTGACATGACAGAATTACA 59.845 41.667 26.07 0.25 39.94 2.41
2028 2047 1.672030 CCGTGGCAAGCTGACATGA 60.672 57.895 11.46 0.00 45.16 3.07
2056 2075 1.599518 GCAATCCGACCACACCACA 60.600 57.895 0.00 0.00 0.00 4.17
2086 2105 5.224888 TCGTAGATTTAACGAGCAACTGTT 58.775 37.500 0.00 0.00 43.90 3.16
2165 2185 3.343941 AAAGCTGGCCGTCATAAACTA 57.656 42.857 0.00 0.00 0.00 2.24
2294 2314 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2295 2315 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2296 2316 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2297 2317 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
2298 2318 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
2299 2319 4.999311 ACTGTTGGGGAACGTAGTAATTTC 59.001 41.667 0.00 0.00 45.00 2.17
2300 2320 4.758165 CACTGTTGGGGAACGTAGTAATTT 59.242 41.667 0.00 0.00 45.00 1.82
2301 2321 4.320870 CACTGTTGGGGAACGTAGTAATT 58.679 43.478 0.00 0.00 45.00 1.40
2302 2322 3.307199 CCACTGTTGGGGAACGTAGTAAT 60.307 47.826 0.00 0.00 38.81 1.89
2303 2323 2.037511 CCACTGTTGGGGAACGTAGTAA 59.962 50.000 0.00 0.00 38.81 2.24
2304 2324 1.619827 CCACTGTTGGGGAACGTAGTA 59.380 52.381 0.00 0.00 38.81 1.82
2305 2325 0.395312 CCACTGTTGGGGAACGTAGT 59.605 55.000 0.00 0.00 41.04 2.73
2306 2326 0.953960 GCCACTGTTGGGGAACGTAG 60.954 60.000 0.00 0.00 44.15 3.51
2307 2327 1.071814 GCCACTGTTGGGGAACGTA 59.928 57.895 0.00 0.00 44.15 3.57
2308 2328 2.203294 GCCACTGTTGGGGAACGT 60.203 61.111 0.00 0.00 44.15 3.99
2309 2329 1.586154 GATGCCACTGTTGGGGAACG 61.586 60.000 0.00 0.00 44.15 3.95
2310 2330 1.250840 GGATGCCACTGTTGGGGAAC 61.251 60.000 0.00 0.00 44.15 3.62
2311 2331 1.076549 GGATGCCACTGTTGGGGAA 59.923 57.895 0.00 0.00 44.15 3.97
2312 2332 2.763215 GGATGCCACTGTTGGGGA 59.237 61.111 0.00 0.00 44.15 4.81
2313 2333 2.751436 CGGATGCCACTGTTGGGG 60.751 66.667 0.00 0.00 44.15 4.96
2314 2334 1.746615 CTCGGATGCCACTGTTGGG 60.747 63.158 0.00 0.00 44.15 4.12
2316 2336 3.181367 GCTCGGATGCCACTGTTG 58.819 61.111 0.00 0.00 0.00 3.33
2324 2344 1.334869 CATAAAACCTGGCTCGGATGC 59.665 52.381 0.00 0.00 0.00 3.91
2325 2345 1.334869 GCATAAAACCTGGCTCGGATG 59.665 52.381 0.00 0.00 0.00 3.51
2326 2346 1.680338 GCATAAAACCTGGCTCGGAT 58.320 50.000 0.00 0.00 0.00 4.18
2327 2347 0.742990 CGCATAAAACCTGGCTCGGA 60.743 55.000 0.00 0.00 0.00 4.55
2328 2348 1.024579 ACGCATAAAACCTGGCTCGG 61.025 55.000 0.00 0.00 0.00 4.63
2329 2349 0.802494 AACGCATAAAACCTGGCTCG 59.198 50.000 0.00 0.00 0.00 5.03
2330 2350 1.810151 TCAACGCATAAAACCTGGCTC 59.190 47.619 0.00 0.00 0.00 4.70
2331 2351 1.904287 TCAACGCATAAAACCTGGCT 58.096 45.000 0.00 0.00 0.00 4.75
2332 2352 2.094752 ACATCAACGCATAAAACCTGGC 60.095 45.455 0.00 0.00 0.00 4.85
2333 2353 3.848272 ACATCAACGCATAAAACCTGG 57.152 42.857 0.00 0.00 0.00 4.45
2334 2354 5.229887 GCATAACATCAACGCATAAAACCTG 59.770 40.000 0.00 0.00 0.00 4.00
2335 2355 5.105957 TGCATAACATCAACGCATAAAACCT 60.106 36.000 0.00 0.00 0.00 3.50
2336 2356 5.004345 GTGCATAACATCAACGCATAAAACC 59.996 40.000 0.00 0.00 34.66 3.27
2337 2357 5.275234 CGTGCATAACATCAACGCATAAAAC 60.275 40.000 0.00 0.00 34.66 2.43
2338 2358 4.790651 CGTGCATAACATCAACGCATAAAA 59.209 37.500 0.00 0.00 34.66 1.52
2339 2359 4.093556 TCGTGCATAACATCAACGCATAAA 59.906 37.500 0.00 0.00 34.66 1.40
2340 2360 3.619038 TCGTGCATAACATCAACGCATAA 59.381 39.130 0.00 0.00 34.66 1.90
2341 2361 3.190874 TCGTGCATAACATCAACGCATA 58.809 40.909 0.00 0.00 34.66 3.14
2342 2362 2.006169 TCGTGCATAACATCAACGCAT 58.994 42.857 0.00 0.00 34.66 4.73
2343 2363 1.393196 CTCGTGCATAACATCAACGCA 59.607 47.619 0.00 0.00 0.00 5.24
2344 2364 1.393539 ACTCGTGCATAACATCAACGC 59.606 47.619 0.00 0.00 0.00 4.84
2345 2365 4.102649 TCTACTCGTGCATAACATCAACG 58.897 43.478 0.00 0.00 0.00 4.10
2346 2366 5.347635 TGTTCTACTCGTGCATAACATCAAC 59.652 40.000 0.00 0.00 0.00 3.18
2347 2367 5.347635 GTGTTCTACTCGTGCATAACATCAA 59.652 40.000 0.00 0.00 0.00 2.57
2348 2368 4.862574 GTGTTCTACTCGTGCATAACATCA 59.137 41.667 0.00 0.00 0.00 3.07
2349 2369 4.862574 TGTGTTCTACTCGTGCATAACATC 59.137 41.667 0.00 0.00 0.00 3.06
2350 2370 4.816392 TGTGTTCTACTCGTGCATAACAT 58.184 39.130 0.00 0.00 0.00 2.71
2351 2371 4.245845 TGTGTTCTACTCGTGCATAACA 57.754 40.909 0.00 0.00 0.00 2.41
2352 2372 5.191595 CTTGTGTTCTACTCGTGCATAAC 57.808 43.478 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.