Multiple sequence alignment - TraesCS1A01G068100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G068100 chr1A 100.000 4153 0 0 1 4153 49488864 49484712 0.000000e+00 7670.0
1 TraesCS1A01G068100 chr1A 89.089 834 84 7 3325 4153 90715852 90715021 0.000000e+00 1029.0
2 TraesCS1A01G068100 chr1A 95.556 135 6 0 4019 4153 116900279 116900145 2.510000e-52 217.0
3 TraesCS1A01G068100 chr1D 92.643 2664 140 20 338 2968 50208297 50205657 0.000000e+00 3783.0
4 TraesCS1A01G068100 chr1D 94.253 696 38 2 3325 4018 432858722 432859417 0.000000e+00 1062.0
5 TraesCS1A01G068100 chr1D 90.533 169 15 1 189 357 50208476 50208309 5.400000e-54 222.0
6 TraesCS1A01G068100 chr1B 93.649 1858 106 4 1111 2968 74248719 74250564 0.000000e+00 2767.0
7 TraesCS1A01G068100 chr1B 83.942 548 52 16 189 718 74247973 74248502 3.730000e-135 492.0
8 TraesCS1A01G068100 chr1B 100.000 29 0 0 3033 3061 669456677 669456649 2.000000e-03 54.7
9 TraesCS1A01G068100 chr5D 95.396 695 31 1 3325 4018 193015430 193016124 0.000000e+00 1105.0
10 TraesCS1A01G068100 chr5D 94.676 695 36 1 3325 4018 193008172 193008866 0.000000e+00 1077.0
11 TraesCS1A01G068100 chr5D 94.540 696 35 3 3325 4018 232605701 232605007 0.000000e+00 1072.0
12 TraesCS1A01G068100 chr5D 94.134 699 39 2 3325 4021 509496742 509496044 0.000000e+00 1062.0
13 TraesCS1A01G068100 chr4D 94.676 695 36 1 3325 4018 93757177 93756483 0.000000e+00 1077.0
14 TraesCS1A01G068100 chr6D 94.245 695 39 1 3325 4018 7382371 7383065 0.000000e+00 1061.0
15 TraesCS1A01G068100 chr6D 93.575 716 39 3 3310 4018 97538558 97537843 0.000000e+00 1061.0
16 TraesCS1A01G068100 chr3A 99.479 192 1 0 1 192 455822937 455823128 2.380000e-92 350.0
17 TraesCS1A01G068100 chr3A 98.953 191 2 0 1 191 443408741 443408931 3.980000e-90 342.0
18 TraesCS1A01G068100 chr3A 97.059 204 5 1 1 203 659925892 659925689 3.980000e-90 342.0
19 TraesCS1A01G068100 chr3A 98.953 191 1 1 1 191 455812108 455812297 1.430000e-89 340.0
20 TraesCS1A01G068100 chr3A 96.078 204 8 0 1 204 57731238 57731035 2.390000e-87 333.0
21 TraesCS1A01G068100 chr3A 96.350 137 5 0 4017 4153 420783137 420783273 4.180000e-55 226.0
22 TraesCS1A01G068100 chr3A 86.188 181 19 5 3976 4153 443969551 443969728 1.520000e-44 191.0
23 TraesCS1A01G068100 chr4A 98.958 192 1 1 1 191 450131714 450131523 3.980000e-90 342.0
24 TraesCS1A01G068100 chr4A 98.953 191 2 0 1 191 641319188 641319378 3.980000e-90 342.0
25 TraesCS1A01G068100 chr4A 95.673 208 7 2 1 207 35440554 35440348 2.390000e-87 333.0
26 TraesCS1A01G068100 chr4A 89.441 161 13 4 3994 4152 131736807 131736649 2.530000e-47 200.0
27 TraesCS1A01G068100 chr7A 98.438 192 3 0 1 192 267608777 267608968 5.140000e-89 339.0
28 TraesCS1A01G068100 chr7A 95.620 137 6 0 4017 4153 186988928 186988792 1.940000e-53 220.0
29 TraesCS1A01G068100 chr7A 95.588 136 6 0 4018 4153 216074868 216075003 6.990000e-53 219.0
30 TraesCS1A01G068100 chr2A 95.833 144 5 1 4011 4153 622980573 622980430 8.980000e-57 231.0
31 TraesCS1A01G068100 chr2A 94.964 139 7 0 4015 4153 446829496 446829358 6.990000e-53 219.0
32 TraesCS1A01G068100 chr6B 84.127 63 8 2 1010 1071 643439118 643439179 4.480000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G068100 chr1A 49484712 49488864 4152 True 7670.0 7670 100.0000 1 4153 1 chr1A.!!$R1 4152
1 TraesCS1A01G068100 chr1A 90715021 90715852 831 True 1029.0 1029 89.0890 3325 4153 1 chr1A.!!$R2 828
2 TraesCS1A01G068100 chr1D 50205657 50208476 2819 True 2002.5 3783 91.5880 189 2968 2 chr1D.!!$R1 2779
3 TraesCS1A01G068100 chr1D 432858722 432859417 695 False 1062.0 1062 94.2530 3325 4018 1 chr1D.!!$F1 693
4 TraesCS1A01G068100 chr1B 74247973 74250564 2591 False 1629.5 2767 88.7955 189 2968 2 chr1B.!!$F1 2779
5 TraesCS1A01G068100 chr5D 193015430 193016124 694 False 1105.0 1105 95.3960 3325 4018 1 chr5D.!!$F2 693
6 TraesCS1A01G068100 chr5D 193008172 193008866 694 False 1077.0 1077 94.6760 3325 4018 1 chr5D.!!$F1 693
7 TraesCS1A01G068100 chr5D 232605007 232605701 694 True 1072.0 1072 94.5400 3325 4018 1 chr5D.!!$R1 693
8 TraesCS1A01G068100 chr5D 509496044 509496742 698 True 1062.0 1062 94.1340 3325 4021 1 chr5D.!!$R2 696
9 TraesCS1A01G068100 chr4D 93756483 93757177 694 True 1077.0 1077 94.6760 3325 4018 1 chr4D.!!$R1 693
10 TraesCS1A01G068100 chr6D 7382371 7383065 694 False 1061.0 1061 94.2450 3325 4018 1 chr6D.!!$F1 693
11 TraesCS1A01G068100 chr6D 97537843 97538558 715 True 1061.0 1061 93.5750 3310 4018 1 chr6D.!!$R1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 544 0.390603 TAGATTGGTTCGTGTGCGGG 60.391 55.0 0.00 0.0 38.89 6.13 F
1723 1847 0.739462 GGCGTCGATGATGGTTCACA 60.739 55.0 9.31 0.0 33.85 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1739 1863 0.459934 AGAAGAGACGCATGAGCAGC 60.460 55.0 0.0 0.0 42.27 5.25 R
3231 3360 0.246635 TAGCTCCTTCTCGTGCAACC 59.753 55.0 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.573664 ACTTGTGCAAGCTTATTTGTATCA 57.426 33.333 11.43 0.00 41.99 2.15
24 25 7.161773 ACTTGTGCAAGCTTATTTGTATCAT 57.838 32.000 11.43 0.00 41.99 2.45
25 26 8.279970 ACTTGTGCAAGCTTATTTGTATCATA 57.720 30.769 11.43 0.00 41.99 2.15
26 27 8.906867 ACTTGTGCAAGCTTATTTGTATCATAT 58.093 29.630 11.43 0.00 41.99 1.78
27 28 9.390795 CTTGTGCAAGCTTATTTGTATCATATC 57.609 33.333 0.00 0.00 0.00 1.63
28 29 8.449251 TGTGCAAGCTTATTTGTATCATATCA 57.551 30.769 0.00 0.00 0.00 2.15
29 30 8.344831 TGTGCAAGCTTATTTGTATCATATCAC 58.655 33.333 0.00 0.00 0.00 3.06
30 31 8.562892 GTGCAAGCTTATTTGTATCATATCACT 58.437 33.333 0.00 0.00 0.00 3.41
31 32 9.123902 TGCAAGCTTATTTGTATCATATCACTT 57.876 29.630 0.00 0.00 0.00 3.16
32 33 9.390795 GCAAGCTTATTTGTATCATATCACTTG 57.609 33.333 0.00 0.00 33.28 3.16
33 34 9.390795 CAAGCTTATTTGTATCATATCACTTGC 57.609 33.333 0.00 0.00 0.00 4.01
34 35 8.915057 AGCTTATTTGTATCATATCACTTGCT 57.085 30.769 0.00 0.00 0.00 3.91
35 36 9.347240 AGCTTATTTGTATCATATCACTTGCTT 57.653 29.630 0.00 0.00 0.00 3.91
36 37 9.390795 GCTTATTTGTATCATATCACTTGCTTG 57.609 33.333 0.00 0.00 0.00 4.01
37 38 9.390795 CTTATTTGTATCATATCACTTGCTTGC 57.609 33.333 0.00 0.00 0.00 4.01
38 39 7.578310 ATTTGTATCATATCACTTGCTTGCT 57.422 32.000 0.00 0.00 0.00 3.91
39 40 7.395190 TTTGTATCATATCACTTGCTTGCTT 57.605 32.000 0.00 0.00 0.00 3.91
40 41 6.367686 TGTATCATATCACTTGCTTGCTTG 57.632 37.500 0.00 0.00 0.00 4.01
41 42 5.882000 TGTATCATATCACTTGCTTGCTTGT 59.118 36.000 0.00 0.00 0.00 3.16
42 43 4.690184 TCATATCACTTGCTTGCTTGTG 57.310 40.909 10.45 10.45 0.00 3.33
43 44 4.074259 TCATATCACTTGCTTGCTTGTGT 58.926 39.130 14.14 7.83 0.00 3.72
44 45 4.520111 TCATATCACTTGCTTGCTTGTGTT 59.480 37.500 14.14 10.52 0.00 3.32
45 46 2.849880 TCACTTGCTTGCTTGTGTTC 57.150 45.000 14.14 0.00 0.00 3.18
46 47 1.405105 TCACTTGCTTGCTTGTGTTCC 59.595 47.619 14.14 0.00 0.00 3.62
47 48 1.406539 CACTTGCTTGCTTGTGTTCCT 59.593 47.619 9.17 0.00 0.00 3.36
48 49 2.618241 CACTTGCTTGCTTGTGTTCCTA 59.382 45.455 9.17 0.00 0.00 2.94
49 50 3.254166 CACTTGCTTGCTTGTGTTCCTAT 59.746 43.478 9.17 0.00 0.00 2.57
50 51 4.455533 CACTTGCTTGCTTGTGTTCCTATA 59.544 41.667 9.17 0.00 0.00 1.31
51 52 4.455877 ACTTGCTTGCTTGTGTTCCTATAC 59.544 41.667 0.00 0.00 0.00 1.47
52 53 4.286297 TGCTTGCTTGTGTTCCTATACT 57.714 40.909 0.00 0.00 0.00 2.12
53 54 4.651778 TGCTTGCTTGTGTTCCTATACTT 58.348 39.130 0.00 0.00 0.00 2.24
54 55 4.455533 TGCTTGCTTGTGTTCCTATACTTG 59.544 41.667 0.00 0.00 0.00 3.16
55 56 4.455877 GCTTGCTTGTGTTCCTATACTTGT 59.544 41.667 0.00 0.00 0.00 3.16
56 57 5.048713 GCTTGCTTGTGTTCCTATACTTGTT 60.049 40.000 0.00 0.00 0.00 2.83
57 58 5.940192 TGCTTGTGTTCCTATACTTGTTG 57.060 39.130 0.00 0.00 0.00 3.33
58 59 4.215399 TGCTTGTGTTCCTATACTTGTTGC 59.785 41.667 0.00 0.00 0.00 4.17
59 60 4.215399 GCTTGTGTTCCTATACTTGTTGCA 59.785 41.667 0.00 0.00 0.00 4.08
60 61 5.106157 GCTTGTGTTCCTATACTTGTTGCAT 60.106 40.000 0.00 0.00 0.00 3.96
61 62 6.494893 TTGTGTTCCTATACTTGTTGCATC 57.505 37.500 0.00 0.00 0.00 3.91
62 63 5.555966 TGTGTTCCTATACTTGTTGCATCA 58.444 37.500 0.00 0.00 0.00 3.07
63 64 6.179756 TGTGTTCCTATACTTGTTGCATCAT 58.820 36.000 0.00 0.00 0.00 2.45
64 65 7.334858 TGTGTTCCTATACTTGTTGCATCATA 58.665 34.615 0.00 0.00 0.00 2.15
65 66 7.992608 TGTGTTCCTATACTTGTTGCATCATAT 59.007 33.333 0.00 0.00 0.00 1.78
66 67 9.489084 GTGTTCCTATACTTGTTGCATCATATA 57.511 33.333 0.00 0.00 0.00 0.86
67 68 9.710900 TGTTCCTATACTTGTTGCATCATATAG 57.289 33.333 13.75 13.75 0.00 1.31
68 69 9.155975 GTTCCTATACTTGTTGCATCATATAGG 57.844 37.037 23.95 23.95 41.30 2.57
69 70 8.435931 TCCTATACTTGTTGCATCATATAGGT 57.564 34.615 26.18 13.62 40.98 3.08
70 71 8.880244 TCCTATACTTGTTGCATCATATAGGTT 58.120 33.333 26.18 9.11 40.98 3.50
71 72 8.939929 CCTATACTTGTTGCATCATATAGGTTG 58.060 37.037 22.78 9.15 37.73 3.77
72 73 5.505173 ACTTGTTGCATCATATAGGTTGC 57.495 39.130 12.38 12.38 35.67 4.17
73 74 5.195940 ACTTGTTGCATCATATAGGTTGCT 58.804 37.500 18.26 0.00 36.10 3.91
74 75 5.297776 ACTTGTTGCATCATATAGGTTGCTC 59.702 40.000 18.26 12.75 36.10 4.26
75 76 4.779696 TGTTGCATCATATAGGTTGCTCA 58.220 39.130 18.26 14.57 36.10 4.26
76 77 5.379187 TGTTGCATCATATAGGTTGCTCAT 58.621 37.500 18.26 0.00 36.10 2.90
77 78 5.471116 TGTTGCATCATATAGGTTGCTCATC 59.529 40.000 18.26 8.81 36.10 2.92
78 79 5.494390 TGCATCATATAGGTTGCTCATCT 57.506 39.130 18.26 0.00 36.10 2.90
79 80 6.610075 TGCATCATATAGGTTGCTCATCTA 57.390 37.500 18.26 0.00 36.10 1.98
80 81 6.637657 TGCATCATATAGGTTGCTCATCTAG 58.362 40.000 18.26 0.00 36.10 2.43
81 82 6.212187 TGCATCATATAGGTTGCTCATCTAGT 59.788 38.462 18.26 0.00 36.10 2.57
82 83 7.102346 GCATCATATAGGTTGCTCATCTAGTT 58.898 38.462 12.08 0.00 32.41 2.24
83 84 7.064371 GCATCATATAGGTTGCTCATCTAGTTG 59.936 40.741 12.08 0.00 32.41 3.16
84 85 6.459066 TCATATAGGTTGCTCATCTAGTTGC 58.541 40.000 0.00 0.00 0.00 4.17
85 86 4.760530 ATAGGTTGCTCATCTAGTTGCA 57.239 40.909 0.00 0.00 0.00 4.08
86 87 3.641434 AGGTTGCTCATCTAGTTGCAT 57.359 42.857 0.00 0.00 35.27 3.96
87 88 4.760530 AGGTTGCTCATCTAGTTGCATA 57.239 40.909 0.00 0.00 35.27 3.14
88 89 5.301835 AGGTTGCTCATCTAGTTGCATAT 57.698 39.130 0.00 0.00 35.27 1.78
89 90 5.303971 AGGTTGCTCATCTAGTTGCATATC 58.696 41.667 0.00 0.00 35.27 1.63
90 91 5.071519 AGGTTGCTCATCTAGTTGCATATCT 59.928 40.000 0.00 0.00 35.27 1.98
91 92 6.268617 AGGTTGCTCATCTAGTTGCATATCTA 59.731 38.462 0.00 0.00 35.27 1.98
92 93 6.589523 GGTTGCTCATCTAGTTGCATATCTAG 59.410 42.308 12.11 12.11 35.27 2.43
93 94 7.374272 GTTGCTCATCTAGTTGCATATCTAGA 58.626 38.462 18.97 18.97 44.07 2.43
94 95 6.918626 TGCTCATCTAGTTGCATATCTAGAC 58.081 40.000 19.03 11.23 43.19 2.59
95 96 6.491403 TGCTCATCTAGTTGCATATCTAGACA 59.509 38.462 19.03 12.87 43.19 3.41
96 97 7.014615 TGCTCATCTAGTTGCATATCTAGACAA 59.985 37.037 19.03 12.46 43.19 3.18
97 98 7.328249 GCTCATCTAGTTGCATATCTAGACAAC 59.672 40.741 19.03 13.43 43.19 3.32
98 99 7.661968 TCATCTAGTTGCATATCTAGACAACC 58.338 38.462 19.03 3.97 43.19 3.77
99 100 7.507277 TCATCTAGTTGCATATCTAGACAACCT 59.493 37.037 19.03 9.28 43.19 3.50
100 101 8.797438 CATCTAGTTGCATATCTAGACAACCTA 58.203 37.037 19.03 9.74 43.19 3.08
101 102 8.167605 TCTAGTTGCATATCTAGACAACCTAC 57.832 38.462 16.29 5.11 42.61 3.18
102 103 7.999545 TCTAGTTGCATATCTAGACAACCTACT 59.000 37.037 16.29 10.57 42.61 2.57
103 104 7.425224 AGTTGCATATCTAGACAACCTACTT 57.575 36.000 16.29 0.58 42.61 2.24
104 105 7.852263 AGTTGCATATCTAGACAACCTACTTT 58.148 34.615 16.29 0.03 42.61 2.66
105 106 7.766278 AGTTGCATATCTAGACAACCTACTTTG 59.234 37.037 16.29 0.00 42.61 2.77
106 107 7.418337 TGCATATCTAGACAACCTACTTTGA 57.582 36.000 0.00 0.00 0.00 2.69
107 108 8.023021 TGCATATCTAGACAACCTACTTTGAT 57.977 34.615 0.00 0.00 0.00 2.57
108 109 7.928167 TGCATATCTAGACAACCTACTTTGATG 59.072 37.037 0.00 0.00 0.00 3.07
109 110 7.095439 GCATATCTAGACAACCTACTTTGATGC 60.095 40.741 0.00 0.00 0.00 3.91
110 111 5.738619 TCTAGACAACCTACTTTGATGCA 57.261 39.130 0.00 0.00 0.00 3.96
111 112 6.109156 TCTAGACAACCTACTTTGATGCAA 57.891 37.500 0.00 0.00 0.00 4.08
112 113 6.530120 TCTAGACAACCTACTTTGATGCAAA 58.470 36.000 0.00 0.00 0.00 3.68
152 153 8.365399 AGAAAAGCTAAAAATTGTTAGTTGCC 57.635 30.769 15.37 4.63 34.20 4.52
153 154 8.204160 AGAAAAGCTAAAAATTGTTAGTTGCCT 58.796 29.630 15.37 6.43 34.20 4.75
154 155 9.471084 GAAAAGCTAAAAATTGTTAGTTGCCTA 57.529 29.630 15.37 0.00 34.20 3.93
155 156 9.996554 AAAAGCTAAAAATTGTTAGTTGCCTAT 57.003 25.926 15.37 0.00 34.20 2.57
156 157 9.996554 AAAGCTAAAAATTGTTAGTTGCCTATT 57.003 25.926 15.37 0.13 34.20 1.73
157 158 9.639601 AAGCTAAAAATTGTTAGTTGCCTATTC 57.360 29.630 15.37 0.00 34.20 1.75
158 159 8.802267 AGCTAAAAATTGTTAGTTGCCTATTCA 58.198 29.630 15.37 0.00 34.20 2.57
159 160 8.860128 GCTAAAAATTGTTAGTTGCCTATTCAC 58.140 33.333 15.37 0.00 34.20 3.18
160 161 9.353999 CTAAAAATTGTTAGTTGCCTATTCACC 57.646 33.333 7.18 0.00 0.00 4.02
161 162 5.914898 AATTGTTAGTTGCCTATTCACCC 57.085 39.130 0.00 0.00 0.00 4.61
162 163 3.359695 TGTTAGTTGCCTATTCACCCC 57.640 47.619 0.00 0.00 0.00 4.95
163 164 2.025699 TGTTAGTTGCCTATTCACCCCC 60.026 50.000 0.00 0.00 0.00 5.40
181 182 2.563179 CCCCCTCTAGTCAACCATATCG 59.437 54.545 0.00 0.00 0.00 2.92
182 183 3.497332 CCCCTCTAGTCAACCATATCGA 58.503 50.000 0.00 0.00 0.00 3.59
183 184 4.090090 CCCCTCTAGTCAACCATATCGAT 58.910 47.826 2.16 2.16 0.00 3.59
184 185 4.158764 CCCCTCTAGTCAACCATATCGATC 59.841 50.000 0.00 0.00 0.00 3.69
185 186 4.158764 CCCTCTAGTCAACCATATCGATCC 59.841 50.000 0.00 0.00 0.00 3.36
186 187 5.013547 CCTCTAGTCAACCATATCGATCCT 58.986 45.833 0.00 0.00 0.00 3.24
187 188 5.478679 CCTCTAGTCAACCATATCGATCCTT 59.521 44.000 0.00 0.00 0.00 3.36
193 194 4.408921 TCAACCATATCGATCCTTTCACCT 59.591 41.667 0.00 0.00 0.00 4.00
220 221 3.799137 CAAAACTTGCATTCATGTGGC 57.201 42.857 0.00 0.00 31.85 5.01
294 295 1.272807 AAAATGCATGCCTGAAGCCT 58.727 45.000 16.68 0.00 42.71 4.58
327 328 0.602905 GGCTTTCCTGTGTGTACGCT 60.603 55.000 8.10 0.00 0.00 5.07
331 332 1.254026 TTCCTGTGTGTACGCTAGCT 58.746 50.000 13.93 2.46 0.00 3.32
334 335 1.471287 CCTGTGTGTACGCTAGCTACA 59.529 52.381 13.93 16.24 0.00 2.74
376 407 7.562135 TGACTAATCATTTCTAGGTAACCACC 58.438 38.462 0.00 0.00 46.19 4.61
472 514 0.744414 CACCATCAAGAACGGGCGAT 60.744 55.000 0.00 0.00 0.00 4.58
495 537 7.010183 CGATGACATAGTTTTAGATTGGTTCGT 59.990 37.037 0.00 0.00 0.00 3.85
496 538 7.359262 TGACATAGTTTTAGATTGGTTCGTG 57.641 36.000 0.00 0.00 0.00 4.35
497 539 6.932400 TGACATAGTTTTAGATTGGTTCGTGT 59.068 34.615 0.00 0.00 0.00 4.49
498 540 7.095397 TGACATAGTTTTAGATTGGTTCGTGTG 60.095 37.037 0.00 0.00 0.00 3.82
499 541 4.483476 AGTTTTAGATTGGTTCGTGTGC 57.517 40.909 0.00 0.00 0.00 4.57
500 542 3.059188 AGTTTTAGATTGGTTCGTGTGCG 60.059 43.478 0.00 0.00 39.92 5.34
501 543 1.434555 TTAGATTGGTTCGTGTGCGG 58.565 50.000 0.00 0.00 38.89 5.69
502 544 0.390603 TAGATTGGTTCGTGTGCGGG 60.391 55.000 0.00 0.00 38.89 6.13
503 545 2.671619 ATTGGTTCGTGTGCGGGG 60.672 61.111 0.00 0.00 38.89 5.73
504 546 4.939368 TTGGTTCGTGTGCGGGGG 62.939 66.667 0.00 0.00 38.89 5.40
506 548 4.006357 GGTTCGTGTGCGGGGGTA 62.006 66.667 0.00 0.00 38.89 3.69
507 549 2.433664 GTTCGTGTGCGGGGGTAG 60.434 66.667 0.00 0.00 38.89 3.18
508 550 4.382320 TTCGTGTGCGGGGGTAGC 62.382 66.667 0.00 0.00 38.89 3.58
511 553 4.109675 GTGTGCGGGGGTAGCCAT 62.110 66.667 14.06 0.00 0.00 4.40
512 554 3.792736 TGTGCGGGGGTAGCCATC 61.793 66.667 14.06 3.35 0.00 3.51
513 555 4.910585 GTGCGGGGGTAGCCATCG 62.911 72.222 14.06 16.30 0.00 3.84
569 611 2.306805 CGGTAGGGGTTTAAGGAAAGGT 59.693 50.000 0.00 0.00 0.00 3.50
615 679 2.751436 CACCGTTGGCCATGGAGG 60.751 66.667 26.71 19.61 41.84 4.30
619 683 2.763215 GTTGGCCATGGAGGGTGA 59.237 61.111 18.40 0.00 38.09 4.02
632 696 4.699522 GGTGAAAGCCGGCGTCCT 62.700 66.667 23.20 2.75 0.00 3.85
663 727 2.577593 GGGCTGACAGACCGGTAC 59.422 66.667 12.78 0.60 30.77 3.34
745 860 2.872245 ACCAATGCTCATACATACGCAC 59.128 45.455 0.00 0.00 34.93 5.34
755 870 5.519722 TCATACATACGCACATACACTCAG 58.480 41.667 0.00 0.00 0.00 3.35
769 884 6.490040 ACATACACTCAGCCATTTTTGTTAGT 59.510 34.615 0.00 0.00 0.00 2.24
783 898 3.921119 TGTTAGTTGTGTATCGGACGT 57.079 42.857 0.00 0.00 0.00 4.34
790 905 2.156917 TGTGTATCGGACGTCAGAAGT 58.843 47.619 22.02 9.58 0.00 3.01
852 967 1.069978 CAATTGTCGGGCCCTTTTTGT 59.930 47.619 22.43 0.00 0.00 2.83
884 999 9.840427 AGAAAATGAGTACACAATTTTATTCGG 57.160 29.630 7.61 0.00 0.00 4.30
905 1020 4.613622 CGGAGCCAAAAATGAGTACACAAG 60.614 45.833 0.00 0.00 0.00 3.16
930 1045 2.832129 GGGTGTGGTTAGATCTCAGTCA 59.168 50.000 0.00 0.00 0.00 3.41
931 1046 3.368531 GGGTGTGGTTAGATCTCAGTCAC 60.369 52.174 0.00 5.07 0.00 3.67
1013 1137 6.684555 GCACGAATCTTCACATAAAATCTCAC 59.315 38.462 0.00 0.00 0.00 3.51
1031 1155 9.669353 AAATCTCACAAATATAATGTTGATCGC 57.331 29.630 0.00 0.00 0.00 4.58
1034 1158 7.384932 TCTCACAAATATAATGTTGATCGCGAT 59.615 33.333 23.97 23.97 0.00 4.58
1042 1166 3.899835 TGTTGATCGCGATTTCGTTAG 57.100 42.857 24.55 0.00 42.22 2.34
1052 1176 4.259292 CGCGATTTCGTTAGGTCTTAGTTG 60.259 45.833 0.00 0.00 42.22 3.16
1059 1183 5.311265 TCGTTAGGTCTTAGTTGACTGAGA 58.689 41.667 1.89 1.89 36.42 3.27
1061 1185 6.433404 TCGTTAGGTCTTAGTTGACTGAGATT 59.567 38.462 8.60 4.28 40.13 2.40
1074 1198 2.939103 ACTGAGATTTAGCAATCCGCAC 59.061 45.455 0.00 0.00 46.13 5.34
1077 1201 3.755905 TGAGATTTAGCAATCCGCACAAA 59.244 39.130 0.00 0.00 46.13 2.83
1150 1274 1.736126 CTTCTGCTAGTCCACGTCGTA 59.264 52.381 0.00 0.00 0.00 3.43
1153 1277 1.061570 GCTAGTCCACGTCGTACCG 59.938 63.158 0.00 0.00 0.00 4.02
1211 1335 2.825836 CCTCCATTCCGTGCCAGC 60.826 66.667 0.00 0.00 0.00 4.85
1251 1375 1.762957 ACACCACAGAAGTACACAGCT 59.237 47.619 0.00 0.00 0.00 4.24
1283 1407 4.580551 CGCCCACGTATCCGGTCC 62.581 72.222 0.00 0.00 38.78 4.46
1628 1752 1.550524 CCGTCCATCACTTCCTTGAGA 59.449 52.381 0.00 0.00 0.00 3.27
1647 1771 4.395583 GAGAACCGGACGCGTCGT 62.396 66.667 30.99 21.88 45.10 4.34
1665 1789 3.324099 TCGTCGGAGTCGAAGCTGC 62.324 63.158 0.00 0.00 45.81 5.25
1667 1791 2.568612 TCGGAGTCGAAGCTGCTG 59.431 61.111 1.35 0.00 43.03 4.41
1670 1794 1.446966 GGAGTCGAAGCTGCTGGAC 60.447 63.158 20.32 20.32 0.00 4.02
1671 1795 1.803519 GAGTCGAAGCTGCTGGACG 60.804 63.158 21.15 18.00 34.68 4.79
1672 1796 3.482783 GTCGAAGCTGCTGGACGC 61.483 66.667 15.44 9.30 39.77 5.19
1718 1842 3.458163 ACGGGCGTCGATGATGGT 61.458 61.111 9.31 0.00 42.43 3.55
1721 1845 1.153449 GGGCGTCGATGATGGTTCA 60.153 57.895 9.31 0.00 36.00 3.18
1723 1847 0.739462 GGCGTCGATGATGGTTCACA 60.739 55.000 9.31 0.00 33.85 3.58
1739 1863 1.373497 ACACTTCTTCTCGCTGGCG 60.373 57.895 8.80 8.80 41.35 5.69
1815 1939 4.020128 GGTTCCTCTTCTTCCAAGCTCTTA 60.020 45.833 0.00 0.00 0.00 2.10
1820 1944 2.370281 TCTTCCAAGCTCTTAGCACG 57.630 50.000 1.22 0.00 45.56 5.34
2013 2137 4.710695 CGTGCCTGTCGTACGCCA 62.711 66.667 11.24 4.13 43.66 5.69
2231 2355 1.945354 ATGGCTTCATCGTCGTCGGT 61.945 55.000 1.55 0.00 37.69 4.69
2331 2455 3.976758 TCGACGACGACCATGTCT 58.023 55.556 5.75 0.00 43.81 3.41
2787 2911 1.304713 GTGACGTGGAGGGTAGGGA 60.305 63.158 0.00 0.00 0.00 4.20
2811 2935 2.041922 CGGAGGGGAGGACCATGA 60.042 66.667 0.00 0.00 42.91 3.07
2949 3073 5.079406 CGACGACTCCATTGTAAATTTGTG 58.921 41.667 0.00 0.00 0.00 3.33
2968 3097 7.724305 TTTGTGACTAAGAACTGTAATGACC 57.276 36.000 0.00 0.00 0.00 4.02
2969 3098 5.790593 TGTGACTAAGAACTGTAATGACCC 58.209 41.667 0.00 0.00 0.00 4.46
2970 3099 5.542635 TGTGACTAAGAACTGTAATGACCCT 59.457 40.000 0.00 0.00 0.00 4.34
2971 3100 6.042781 TGTGACTAAGAACTGTAATGACCCTT 59.957 38.462 0.00 0.00 0.00 3.95
2972 3101 6.590677 GTGACTAAGAACTGTAATGACCCTTC 59.409 42.308 0.00 0.00 0.00 3.46
2973 3102 6.051179 ACTAAGAACTGTAATGACCCTTCC 57.949 41.667 0.00 0.00 0.00 3.46
2974 3103 4.993705 AAGAACTGTAATGACCCTTCCA 57.006 40.909 0.00 0.00 0.00 3.53
2975 3104 5.520748 AAGAACTGTAATGACCCTTCCAT 57.479 39.130 0.00 0.00 0.00 3.41
2976 3105 4.848357 AGAACTGTAATGACCCTTCCATG 58.152 43.478 0.00 0.00 0.00 3.66
2977 3106 4.289672 AGAACTGTAATGACCCTTCCATGT 59.710 41.667 0.00 0.00 0.00 3.21
2978 3107 4.657814 ACTGTAATGACCCTTCCATGTT 57.342 40.909 0.00 0.00 0.00 2.71
2979 3108 5.772393 ACTGTAATGACCCTTCCATGTTA 57.228 39.130 0.00 0.00 0.00 2.41
2980 3109 5.497474 ACTGTAATGACCCTTCCATGTTAC 58.503 41.667 0.00 0.00 0.00 2.50
2981 3110 4.850680 TGTAATGACCCTTCCATGTTACC 58.149 43.478 0.00 0.00 0.00 2.85
2982 3111 4.289934 TGTAATGACCCTTCCATGTTACCA 59.710 41.667 0.00 0.00 0.00 3.25
2983 3112 2.871096 TGACCCTTCCATGTTACCAC 57.129 50.000 0.00 0.00 0.00 4.16
2984 3113 1.353022 TGACCCTTCCATGTTACCACC 59.647 52.381 0.00 0.00 0.00 4.61
2985 3114 1.353022 GACCCTTCCATGTTACCACCA 59.647 52.381 0.00 0.00 0.00 4.17
2986 3115 2.000048 ACCCTTCCATGTTACCACCAT 59.000 47.619 0.00 0.00 0.00 3.55
2987 3116 2.025321 ACCCTTCCATGTTACCACCATC 60.025 50.000 0.00 0.00 0.00 3.51
2988 3117 2.654863 CCTTCCATGTTACCACCATCC 58.345 52.381 0.00 0.00 0.00 3.51
2989 3118 2.654863 CTTCCATGTTACCACCATCCC 58.345 52.381 0.00 0.00 0.00 3.85
2990 3119 1.675007 TCCATGTTACCACCATCCCA 58.325 50.000 0.00 0.00 0.00 4.37
2991 3120 1.996291 TCCATGTTACCACCATCCCAA 59.004 47.619 0.00 0.00 0.00 4.12
2992 3121 2.380249 TCCATGTTACCACCATCCCAAA 59.620 45.455 0.00 0.00 0.00 3.28
2993 3122 3.169099 CCATGTTACCACCATCCCAAAA 58.831 45.455 0.00 0.00 0.00 2.44
2994 3123 3.774216 CCATGTTACCACCATCCCAAAAT 59.226 43.478 0.00 0.00 0.00 1.82
2995 3124 4.224818 CCATGTTACCACCATCCCAAAATT 59.775 41.667 0.00 0.00 0.00 1.82
2996 3125 5.418676 CATGTTACCACCATCCCAAAATTC 58.581 41.667 0.00 0.00 0.00 2.17
2997 3126 4.746466 TGTTACCACCATCCCAAAATTCT 58.254 39.130 0.00 0.00 0.00 2.40
2998 3127 5.151454 TGTTACCACCATCCCAAAATTCTT 58.849 37.500 0.00 0.00 0.00 2.52
2999 3128 6.315714 TGTTACCACCATCCCAAAATTCTTA 58.684 36.000 0.00 0.00 0.00 2.10
3000 3129 6.957020 TGTTACCACCATCCCAAAATTCTTAT 59.043 34.615 0.00 0.00 0.00 1.73
3001 3130 7.456269 TGTTACCACCATCCCAAAATTCTTATT 59.544 33.333 0.00 0.00 0.00 1.40
3002 3131 6.950860 ACCACCATCCCAAAATTCTTATTT 57.049 33.333 0.00 0.00 35.49 1.40
3003 3132 7.328404 ACCACCATCCCAAAATTCTTATTTT 57.672 32.000 0.00 0.00 43.09 1.82
3004 3133 8.442660 ACCACCATCCCAAAATTCTTATTTTA 57.557 30.769 0.00 0.00 40.97 1.52
3005 3134 8.539544 ACCACCATCCCAAAATTCTTATTTTAG 58.460 33.333 0.00 0.00 40.97 1.85
3006 3135 8.757877 CCACCATCCCAAAATTCTTATTTTAGA 58.242 33.333 0.00 0.00 40.97 2.10
3030 3159 9.236006 AGATTTACATGATCCTTGCATATTACC 57.764 33.333 0.00 0.00 0.00 2.85
3031 3160 8.938801 ATTTACATGATCCTTGCATATTACCA 57.061 30.769 0.00 0.00 0.00 3.25
3032 3161 8.938801 TTTACATGATCCTTGCATATTACCAT 57.061 30.769 0.00 0.00 0.00 3.55
3033 3162 8.565896 TTACATGATCCTTGCATATTACCATC 57.434 34.615 0.00 0.00 0.00 3.51
3034 3163 6.545567 ACATGATCCTTGCATATTACCATCA 58.454 36.000 0.00 0.00 0.00 3.07
3035 3164 7.179966 ACATGATCCTTGCATATTACCATCAT 58.820 34.615 0.00 0.00 31.35 2.45
3036 3165 7.338703 ACATGATCCTTGCATATTACCATCATC 59.661 37.037 0.00 0.00 29.24 2.92
3037 3166 6.182627 TGATCCTTGCATATTACCATCATCC 58.817 40.000 0.00 0.00 0.00 3.51
3038 3167 5.848286 TCCTTGCATATTACCATCATCCT 57.152 39.130 0.00 0.00 0.00 3.24
3039 3168 6.950860 TCCTTGCATATTACCATCATCCTA 57.049 37.500 0.00 0.00 0.00 2.94
3040 3169 7.328404 TCCTTGCATATTACCATCATCCTAA 57.672 36.000 0.00 0.00 0.00 2.69
3041 3170 7.754624 TCCTTGCATATTACCATCATCCTAAA 58.245 34.615 0.00 0.00 0.00 1.85
3042 3171 8.224025 TCCTTGCATATTACCATCATCCTAAAA 58.776 33.333 0.00 0.00 0.00 1.52
3043 3172 9.028284 CCTTGCATATTACCATCATCCTAAAAT 57.972 33.333 0.00 0.00 0.00 1.82
3046 3175 9.812347 TGCATATTACCATCATCCTAAAATTCT 57.188 29.630 0.00 0.00 0.00 2.40
3068 3197 8.752766 TTCTTGTTTTAGATTAGTGACGTAGG 57.247 34.615 0.00 0.00 0.00 3.18
3069 3198 7.318141 TCTTGTTTTAGATTAGTGACGTAGGG 58.682 38.462 0.00 0.00 0.00 3.53
3070 3199 6.839124 TGTTTTAGATTAGTGACGTAGGGA 57.161 37.500 0.00 0.00 0.00 4.20
3071 3200 6.860080 TGTTTTAGATTAGTGACGTAGGGAG 58.140 40.000 0.00 0.00 0.00 4.30
3072 3201 6.435277 TGTTTTAGATTAGTGACGTAGGGAGT 59.565 38.462 0.00 0.00 0.00 3.85
3073 3202 7.611467 TGTTTTAGATTAGTGACGTAGGGAGTA 59.389 37.037 0.00 0.00 0.00 2.59
3074 3203 7.559590 TTTAGATTAGTGACGTAGGGAGTAC 57.440 40.000 0.00 0.00 0.00 2.73
3075 3204 5.108187 AGATTAGTGACGTAGGGAGTACA 57.892 43.478 0.00 0.00 0.00 2.90
3076 3205 5.503927 AGATTAGTGACGTAGGGAGTACAA 58.496 41.667 0.00 0.00 0.00 2.41
3077 3206 5.589452 AGATTAGTGACGTAGGGAGTACAAG 59.411 44.000 0.00 0.00 0.00 3.16
3078 3207 3.430042 AGTGACGTAGGGAGTACAAGA 57.570 47.619 0.00 0.00 0.00 3.02
3079 3208 3.759581 AGTGACGTAGGGAGTACAAGAA 58.240 45.455 0.00 0.00 0.00 2.52
3080 3209 4.147321 AGTGACGTAGGGAGTACAAGAAA 58.853 43.478 0.00 0.00 0.00 2.52
3081 3210 4.217983 AGTGACGTAGGGAGTACAAGAAAG 59.782 45.833 0.00 0.00 0.00 2.62
3082 3211 4.217118 GTGACGTAGGGAGTACAAGAAAGA 59.783 45.833 0.00 0.00 0.00 2.52
3083 3212 4.828939 TGACGTAGGGAGTACAAGAAAGAA 59.171 41.667 0.00 0.00 0.00 2.52
3084 3213 5.302568 TGACGTAGGGAGTACAAGAAAGAAA 59.697 40.000 0.00 0.00 0.00 2.52
3085 3214 6.165700 ACGTAGGGAGTACAAGAAAGAAAA 57.834 37.500 0.00 0.00 0.00 2.29
3086 3215 6.585416 ACGTAGGGAGTACAAGAAAGAAAAA 58.415 36.000 0.00 0.00 0.00 1.94
3087 3216 6.704937 ACGTAGGGAGTACAAGAAAGAAAAAG 59.295 38.462 0.00 0.00 0.00 2.27
3088 3217 6.927381 CGTAGGGAGTACAAGAAAGAAAAAGA 59.073 38.462 0.00 0.00 0.00 2.52
3089 3218 7.440255 CGTAGGGAGTACAAGAAAGAAAAAGAA 59.560 37.037 0.00 0.00 0.00 2.52
3090 3219 7.569639 AGGGAGTACAAGAAAGAAAAAGAAC 57.430 36.000 0.00 0.00 0.00 3.01
3091 3220 7.116736 AGGGAGTACAAGAAAGAAAAAGAACA 58.883 34.615 0.00 0.00 0.00 3.18
3092 3221 7.780271 AGGGAGTACAAGAAAGAAAAAGAACAT 59.220 33.333 0.00 0.00 0.00 2.71
3093 3222 7.862873 GGGAGTACAAGAAAGAAAAAGAACATG 59.137 37.037 0.00 0.00 0.00 3.21
3094 3223 7.862873 GGAGTACAAGAAAGAAAAAGAACATGG 59.137 37.037 0.00 0.00 0.00 3.66
3095 3224 7.716612 AGTACAAGAAAGAAAAAGAACATGGG 58.283 34.615 0.00 0.00 0.00 4.00
3096 3225 6.790232 ACAAGAAAGAAAAAGAACATGGGA 57.210 33.333 0.00 0.00 0.00 4.37
3097 3226 7.365497 ACAAGAAAGAAAAAGAACATGGGAT 57.635 32.000 0.00 0.00 0.00 3.85
3098 3227 7.795047 ACAAGAAAGAAAAAGAACATGGGATT 58.205 30.769 0.00 0.00 0.00 3.01
3099 3228 8.267183 ACAAGAAAGAAAAAGAACATGGGATTT 58.733 29.630 0.00 0.00 0.00 2.17
3100 3229 8.768019 CAAGAAAGAAAAAGAACATGGGATTTC 58.232 33.333 0.00 1.05 0.00 2.17
3101 3230 7.445121 AGAAAGAAAAAGAACATGGGATTTCC 58.555 34.615 0.00 0.00 0.00 3.13
3117 3246 6.419484 GGATTTCCCCCAAACCTATATTTG 57.581 41.667 0.00 0.00 38.96 2.32
3118 3247 6.140377 GGATTTCCCCCAAACCTATATTTGA 58.860 40.000 0.00 0.00 41.28 2.69
3119 3248 6.613679 GGATTTCCCCCAAACCTATATTTGAA 59.386 38.462 0.00 0.00 41.28 2.69
3120 3249 7.202001 GGATTTCCCCCAAACCTATATTTGAAG 60.202 40.741 0.00 0.00 41.28 3.02
3121 3250 5.806955 TCCCCCAAACCTATATTTGAAGT 57.193 39.130 0.00 0.00 41.28 3.01
3122 3251 5.515106 TCCCCCAAACCTATATTTGAAGTG 58.485 41.667 0.00 0.00 41.28 3.16
3123 3252 5.254267 TCCCCCAAACCTATATTTGAAGTGA 59.746 40.000 0.00 0.00 41.28 3.41
3124 3253 5.955355 CCCCCAAACCTATATTTGAAGTGAA 59.045 40.000 0.00 0.00 41.28 3.18
3125 3254 6.439058 CCCCCAAACCTATATTTGAAGTGAAA 59.561 38.462 0.00 0.00 41.28 2.69
3126 3255 7.038658 CCCCCAAACCTATATTTGAAGTGAAAA 60.039 37.037 0.00 0.00 41.28 2.29
3127 3256 8.371699 CCCCAAACCTATATTTGAAGTGAAAAA 58.628 33.333 0.00 0.00 41.28 1.94
3145 3274 4.950205 AAAAAGTAACTCCTCCGTCTCA 57.050 40.909 0.00 0.00 0.00 3.27
3146 3275 4.950205 AAAAGTAACTCCTCCGTCTCAA 57.050 40.909 0.00 0.00 0.00 3.02
3147 3276 4.950205 AAAGTAACTCCTCCGTCTCAAA 57.050 40.909 0.00 0.00 0.00 2.69
3148 3277 4.950205 AAGTAACTCCTCCGTCTCAAAA 57.050 40.909 0.00 0.00 0.00 2.44
3149 3278 5.485209 AAGTAACTCCTCCGTCTCAAAAT 57.515 39.130 0.00 0.00 0.00 1.82
3150 3279 6.600882 AAGTAACTCCTCCGTCTCAAAATA 57.399 37.500 0.00 0.00 0.00 1.40
3151 3280 6.600882 AGTAACTCCTCCGTCTCAAAATAA 57.399 37.500 0.00 0.00 0.00 1.40
3152 3281 7.001099 AGTAACTCCTCCGTCTCAAAATAAA 57.999 36.000 0.00 0.00 0.00 1.40
3153 3282 7.621796 AGTAACTCCTCCGTCTCAAAATAAAT 58.378 34.615 0.00 0.00 0.00 1.40
3154 3283 6.743575 AACTCCTCCGTCTCAAAATAAATG 57.256 37.500 0.00 0.00 0.00 2.32
3155 3284 5.805728 ACTCCTCCGTCTCAAAATAAATGT 58.194 37.500 0.00 0.00 0.00 2.71
3156 3285 5.875359 ACTCCTCCGTCTCAAAATAAATGTC 59.125 40.000 0.00 0.00 0.00 3.06
3157 3286 5.183228 TCCTCCGTCTCAAAATAAATGTCC 58.817 41.667 0.00 0.00 0.00 4.02
3158 3287 5.045869 TCCTCCGTCTCAAAATAAATGTCCT 60.046 40.000 0.00 0.00 0.00 3.85
3159 3288 6.155565 TCCTCCGTCTCAAAATAAATGTCCTA 59.844 38.462 0.00 0.00 0.00 2.94
3160 3289 6.821665 CCTCCGTCTCAAAATAAATGTCCTAA 59.178 38.462 0.00 0.00 0.00 2.69
3161 3290 7.201617 CCTCCGTCTCAAAATAAATGTCCTAAC 60.202 40.741 0.00 0.00 0.00 2.34
3162 3291 7.391620 TCCGTCTCAAAATAAATGTCCTAACT 58.608 34.615 0.00 0.00 0.00 2.24
3163 3292 8.533657 TCCGTCTCAAAATAAATGTCCTAACTA 58.466 33.333 0.00 0.00 0.00 2.24
3164 3293 8.818057 CCGTCTCAAAATAAATGTCCTAACTAG 58.182 37.037 0.00 0.00 0.00 2.57
3165 3294 8.818057 CGTCTCAAAATAAATGTCCTAACTAGG 58.182 37.037 0.00 0.00 45.02 3.02
3166 3295 9.110502 GTCTCAAAATAAATGTCCTAACTAGGG 57.889 37.037 2.92 0.00 43.79 3.53
3167 3296 9.053472 TCTCAAAATAAATGTCCTAACTAGGGA 57.947 33.333 2.92 0.00 43.79 4.20
3168 3297 9.681062 CTCAAAATAAATGTCCTAACTAGGGAA 57.319 33.333 2.92 0.00 43.79 3.97
3169 3298 9.681062 TCAAAATAAATGTCCTAACTAGGGAAG 57.319 33.333 2.92 0.00 43.79 3.46
3170 3299 8.903820 CAAAATAAATGTCCTAACTAGGGAAGG 58.096 37.037 2.92 0.00 43.79 3.46
3171 3300 7.766736 AATAAATGTCCTAACTAGGGAAGGT 57.233 36.000 2.92 0.00 43.79 3.50
3172 3301 7.766736 ATAAATGTCCTAACTAGGGAAGGTT 57.233 36.000 2.92 0.00 43.79 3.50
3173 3302 5.437191 AATGTCCTAACTAGGGAAGGTTG 57.563 43.478 2.92 0.00 43.79 3.77
3174 3303 3.865571 TGTCCTAACTAGGGAAGGTTGT 58.134 45.455 2.92 0.00 43.79 3.32
3175 3304 5.014534 TGTCCTAACTAGGGAAGGTTGTA 57.985 43.478 2.92 0.00 43.79 2.41
3176 3305 5.596763 TGTCCTAACTAGGGAAGGTTGTAT 58.403 41.667 2.92 0.00 43.79 2.29
3177 3306 6.027482 TGTCCTAACTAGGGAAGGTTGTATT 58.973 40.000 2.92 0.00 43.79 1.89
3178 3307 7.191210 TGTCCTAACTAGGGAAGGTTGTATTA 58.809 38.462 2.92 0.00 43.79 0.98
3179 3308 7.343833 TGTCCTAACTAGGGAAGGTTGTATTAG 59.656 40.741 2.92 0.00 43.79 1.73
3180 3309 7.562821 GTCCTAACTAGGGAAGGTTGTATTAGA 59.437 40.741 2.92 0.00 43.79 2.10
3181 3310 8.294690 TCCTAACTAGGGAAGGTTGTATTAGAT 58.705 37.037 2.92 0.00 43.79 1.98
3182 3311 8.368668 CCTAACTAGGGAAGGTTGTATTAGATG 58.631 40.741 0.00 0.00 39.86 2.90
3183 3312 6.749036 ACTAGGGAAGGTTGTATTAGATGG 57.251 41.667 0.00 0.00 0.00 3.51
3184 3313 4.439253 AGGGAAGGTTGTATTAGATGGC 57.561 45.455 0.00 0.00 0.00 4.40
3185 3314 4.047883 AGGGAAGGTTGTATTAGATGGCT 58.952 43.478 0.00 0.00 0.00 4.75
3186 3315 4.478686 AGGGAAGGTTGTATTAGATGGCTT 59.521 41.667 0.00 0.00 0.00 4.35
3187 3316 5.044105 AGGGAAGGTTGTATTAGATGGCTTT 60.044 40.000 0.00 0.00 0.00 3.51
3188 3317 6.159751 AGGGAAGGTTGTATTAGATGGCTTTA 59.840 38.462 0.00 0.00 0.00 1.85
3189 3318 7.004691 GGGAAGGTTGTATTAGATGGCTTTAT 58.995 38.462 0.00 0.00 0.00 1.40
3190 3319 8.161425 GGGAAGGTTGTATTAGATGGCTTTATA 58.839 37.037 0.00 0.00 0.00 0.98
3191 3320 9.569122 GGAAGGTTGTATTAGATGGCTTTATAA 57.431 33.333 0.00 0.00 0.00 0.98
3199 3328 9.678941 GTATTAGATGGCTTTATAAAACTTGGC 57.321 33.333 0.00 1.04 0.00 4.52
3200 3329 7.954666 TTAGATGGCTTTATAAAACTTGGCT 57.045 32.000 0.00 0.00 0.00 4.75
3201 3330 6.456795 AGATGGCTTTATAAAACTTGGCTC 57.543 37.500 0.00 1.35 0.00 4.70
3202 3331 5.360999 AGATGGCTTTATAAAACTTGGCTCC 59.639 40.000 0.00 0.00 0.00 4.70
3203 3332 4.411927 TGGCTTTATAAAACTTGGCTCCA 58.588 39.130 0.00 0.00 0.00 3.86
3204 3333 5.022787 TGGCTTTATAAAACTTGGCTCCAT 58.977 37.500 0.00 0.00 0.00 3.41
3205 3334 5.105392 TGGCTTTATAAAACTTGGCTCCATG 60.105 40.000 0.00 0.79 0.00 3.66
3206 3335 5.105351 GGCTTTATAAAACTTGGCTCCATGT 60.105 40.000 0.00 2.01 36.13 3.21
3207 3336 5.807011 GCTTTATAAAACTTGGCTCCATGTG 59.193 40.000 8.02 0.00 35.06 3.21
3208 3337 3.874392 ATAAAACTTGGCTCCATGTGC 57.126 42.857 8.02 0.00 35.06 4.57
3215 3344 4.819761 GCTCCATGTGCCTCGCGA 62.820 66.667 9.26 9.26 0.00 5.87
3216 3345 2.584418 CTCCATGTGCCTCGCGAG 60.584 66.667 29.06 29.06 0.00 5.03
3217 3346 3.362399 CTCCATGTGCCTCGCGAGT 62.362 63.158 32.41 12.90 0.00 4.18
3218 3347 3.190849 CCATGTGCCTCGCGAGTG 61.191 66.667 32.41 23.11 0.00 3.51
3220 3349 4.457496 ATGTGCCTCGCGAGTGGG 62.457 66.667 32.41 20.85 44.67 4.61
3222 3351 4.681978 GTGCCTCGCGAGTGGGTT 62.682 66.667 32.41 0.00 44.67 4.11
3223 3352 2.992689 TGCCTCGCGAGTGGGTTA 60.993 61.111 32.41 10.97 44.67 2.85
3224 3353 2.202756 GCCTCGCGAGTGGGTTAG 60.203 66.667 32.41 17.37 44.67 2.34
3225 3354 2.202756 CCTCGCGAGTGGGTTAGC 60.203 66.667 32.41 0.00 40.96 3.09
3226 3355 2.711922 CCTCGCGAGTGGGTTAGCT 61.712 63.158 32.41 0.00 40.96 3.32
3227 3356 1.226717 CTCGCGAGTGGGTTAGCTC 60.227 63.158 27.79 0.00 0.00 4.09
3232 3361 1.817209 GAGTGGGTTAGCTCGGAGG 59.183 63.158 7.20 0.00 0.00 4.30
3233 3362 0.971447 GAGTGGGTTAGCTCGGAGGT 60.971 60.000 14.80 14.80 0.00 3.85
3234 3363 0.544595 AGTGGGTTAGCTCGGAGGTT 60.545 55.000 15.66 0.00 0.00 3.50
3235 3364 0.391263 GTGGGTTAGCTCGGAGGTTG 60.391 60.000 15.66 0.00 0.00 3.77
3236 3365 1.449778 GGGTTAGCTCGGAGGTTGC 60.450 63.158 15.66 8.37 0.00 4.17
3237 3366 1.295423 GGTTAGCTCGGAGGTTGCA 59.705 57.895 15.66 0.00 0.00 4.08
3238 3367 1.019805 GGTTAGCTCGGAGGTTGCAC 61.020 60.000 15.66 9.67 0.00 4.57
3239 3368 1.080093 TTAGCTCGGAGGTTGCACG 60.080 57.895 15.66 0.00 0.00 5.34
3240 3369 1.529152 TTAGCTCGGAGGTTGCACGA 61.529 55.000 15.66 0.00 35.14 4.35
3243 3372 3.450507 TCGGAGGTTGCACGAGAA 58.549 55.556 0.00 0.00 32.29 2.87
3244 3373 1.289066 TCGGAGGTTGCACGAGAAG 59.711 57.895 0.00 0.00 32.29 2.85
3245 3374 1.738099 CGGAGGTTGCACGAGAAGG 60.738 63.158 0.00 0.00 0.00 3.46
3246 3375 1.671742 GGAGGTTGCACGAGAAGGA 59.328 57.895 0.00 0.00 0.00 3.36
3247 3376 0.390472 GGAGGTTGCACGAGAAGGAG 60.390 60.000 0.00 0.00 0.00 3.69
3248 3377 1.004440 AGGTTGCACGAGAAGGAGC 60.004 57.895 0.00 0.00 0.00 4.70
3249 3378 1.004440 GGTTGCACGAGAAGGAGCT 60.004 57.895 0.00 0.00 0.00 4.09
3250 3379 0.246635 GGTTGCACGAGAAGGAGCTA 59.753 55.000 0.00 0.00 0.00 3.32
3251 3380 1.134670 GGTTGCACGAGAAGGAGCTAT 60.135 52.381 0.00 0.00 0.00 2.97
3252 3381 1.929836 GTTGCACGAGAAGGAGCTATG 59.070 52.381 0.00 0.00 0.00 2.23
3253 3382 0.461548 TGCACGAGAAGGAGCTATGG 59.538 55.000 0.00 0.00 0.00 2.74
3254 3383 0.747255 GCACGAGAAGGAGCTATGGA 59.253 55.000 0.00 0.00 0.00 3.41
3255 3384 1.537135 GCACGAGAAGGAGCTATGGAC 60.537 57.143 0.00 0.00 0.00 4.02
3256 3385 1.751351 CACGAGAAGGAGCTATGGACA 59.249 52.381 0.00 0.00 0.00 4.02
3257 3386 2.363680 CACGAGAAGGAGCTATGGACAT 59.636 50.000 0.00 0.00 0.00 3.06
3258 3387 3.034635 ACGAGAAGGAGCTATGGACATT 58.965 45.455 0.00 0.00 0.00 2.71
3259 3388 3.181471 ACGAGAAGGAGCTATGGACATTG 60.181 47.826 0.00 0.00 0.00 2.82
3260 3389 3.068732 CGAGAAGGAGCTATGGACATTGA 59.931 47.826 0.00 0.00 0.00 2.57
3261 3390 4.442052 CGAGAAGGAGCTATGGACATTGAA 60.442 45.833 0.00 0.00 0.00 2.69
3262 3391 5.619220 GAGAAGGAGCTATGGACATTGAAT 58.381 41.667 0.00 0.00 0.00 2.57
3263 3392 6.517362 CGAGAAGGAGCTATGGACATTGAATA 60.517 42.308 0.00 0.00 0.00 1.75
3264 3393 7.141758 AGAAGGAGCTATGGACATTGAATAA 57.858 36.000 0.00 0.00 0.00 1.40
3265 3394 7.577303 AGAAGGAGCTATGGACATTGAATAAA 58.423 34.615 0.00 0.00 0.00 1.40
3266 3395 7.718753 AGAAGGAGCTATGGACATTGAATAAAG 59.281 37.037 0.00 0.00 0.00 1.85
3267 3396 6.904626 AGGAGCTATGGACATTGAATAAAGT 58.095 36.000 0.00 0.00 0.00 2.66
3268 3397 6.769822 AGGAGCTATGGACATTGAATAAAGTG 59.230 38.462 0.00 0.00 0.00 3.16
3269 3398 6.016777 GGAGCTATGGACATTGAATAAAGTGG 60.017 42.308 0.00 0.00 0.00 4.00
3270 3399 5.300286 AGCTATGGACATTGAATAAAGTGGC 59.700 40.000 0.00 0.00 0.00 5.01
3271 3400 5.067674 GCTATGGACATTGAATAAAGTGGCA 59.932 40.000 0.00 0.00 0.00 4.92
3272 3401 5.999205 ATGGACATTGAATAAAGTGGCAA 57.001 34.783 0.00 0.00 0.00 4.52
3273 3402 5.132897 TGGACATTGAATAAAGTGGCAAC 57.867 39.130 0.00 0.00 0.00 4.17
3274 3403 4.832266 TGGACATTGAATAAAGTGGCAACT 59.168 37.500 0.00 0.00 38.71 3.16
3275 3404 6.007076 TGGACATTGAATAAAGTGGCAACTA 58.993 36.000 0.00 0.00 34.77 2.24
3276 3405 6.663093 TGGACATTGAATAAAGTGGCAACTAT 59.337 34.615 0.00 0.00 34.77 2.12
3277 3406 7.178274 TGGACATTGAATAAAGTGGCAACTATT 59.822 33.333 0.00 0.00 34.77 1.73
3278 3407 8.034804 GGACATTGAATAAAGTGGCAACTATTT 58.965 33.333 0.00 0.00 34.77 1.40
3279 3408 8.986477 ACATTGAATAAAGTGGCAACTATTTC 57.014 30.769 0.00 0.00 34.77 2.17
3280 3409 8.806146 ACATTGAATAAAGTGGCAACTATTTCT 58.194 29.630 0.00 0.00 34.77 2.52
3281 3410 9.643693 CATTGAATAAAGTGGCAACTATTTCTT 57.356 29.630 0.00 0.00 34.77 2.52
3282 3411 9.860898 ATTGAATAAAGTGGCAACTATTTCTTC 57.139 29.630 0.00 0.00 34.77 2.87
3283 3412 8.635765 TGAATAAAGTGGCAACTATTTCTTCT 57.364 30.769 0.00 0.00 34.77 2.85
3284 3413 8.730680 TGAATAAAGTGGCAACTATTTCTTCTC 58.269 33.333 0.00 0.00 34.77 2.87
3285 3414 8.635765 AATAAAGTGGCAACTATTTCTTCTCA 57.364 30.769 0.00 0.00 34.77 3.27
3286 3415 6.959639 AAAGTGGCAACTATTTCTTCTCAA 57.040 33.333 0.00 0.00 34.77 3.02
3287 3416 6.959639 AAGTGGCAACTATTTCTTCTCAAA 57.040 33.333 0.00 0.00 34.77 2.69
3288 3417 6.959639 AGTGGCAACTATTTCTTCTCAAAA 57.040 33.333 0.00 0.00 33.79 2.44
3289 3418 7.530426 AGTGGCAACTATTTCTTCTCAAAAT 57.470 32.000 0.00 0.00 33.79 1.82
3290 3419 8.635765 AGTGGCAACTATTTCTTCTCAAAATA 57.364 30.769 0.00 0.00 33.79 1.40
3291 3420 9.077885 AGTGGCAACTATTTCTTCTCAAAATAA 57.922 29.630 0.00 0.00 33.79 1.40
3292 3421 9.691362 GTGGCAACTATTTCTTCTCAAAATAAA 57.309 29.630 0.00 0.00 30.41 1.40
3420 3555 8.614346 TGTATTAACCGGAAACTTAATACATGC 58.386 33.333 27.66 13.88 42.66 4.06
3430 3566 7.638683 GGAAACTTAATACATGCGTGAATACAC 59.361 37.037 14.17 0.00 42.88 2.90
3532 3670 4.891627 TGTGTTGTCATTTGATGAACGT 57.108 36.364 0.00 0.00 41.69 3.99
3584 3722 5.437060 GACAAGACCCATCCATTAGCTTAA 58.563 41.667 0.00 0.00 0.00 1.85
3704 3843 5.348724 CACTTAGTGTGCTATCAAACGTCAT 59.651 40.000 3.88 0.00 40.06 3.06
3782 3921 8.201464 TGTTAAGTTGGCATAGATCGAGATTAA 58.799 33.333 0.00 0.00 0.00 1.40
3791 3930 7.816995 GGCATAGATCGAGATTAAGATTTGTCT 59.183 37.037 0.00 0.00 0.00 3.41
3834 3973 2.044806 CTGGGCCCTCTCGGTAATGG 62.045 65.000 25.70 0.00 0.00 3.16
3967 4106 1.504647 CCGACGATCGAATCTCGGGA 61.505 60.000 27.86 0.00 43.74 5.14
3979 4118 5.359009 TCGAATCTCGGGAAAGTAACATACT 59.641 40.000 0.00 0.00 40.88 2.12
3997 4136 5.707298 ACATACTGATGACAAAGGGAACAAG 59.293 40.000 0.00 0.00 36.48 3.16
4023 4164 0.869068 TGTTATGTGGTTTGTCGGCG 59.131 50.000 0.00 0.00 0.00 6.46
4033 4174 0.250553 TTTGTCGGCGTTCTGGGAAT 60.251 50.000 6.85 0.00 0.00 3.01
4035 4176 2.106683 GTCGGCGTTCTGGGAATGG 61.107 63.158 6.85 0.00 0.00 3.16
4056 4197 3.650950 TCCCCAGACTTGCCTGCC 61.651 66.667 0.00 0.00 32.97 4.85
4092 4234 3.123674 CTGAACCAGCAGGACGTAC 57.876 57.895 0.35 0.00 38.69 3.67
4093 4235 0.317160 CTGAACCAGCAGGACGTACA 59.683 55.000 0.35 0.00 38.69 2.90
4094 4236 0.753867 TGAACCAGCAGGACGTACAA 59.246 50.000 0.35 0.00 38.69 2.41
4105 4247 2.028385 AGGACGTACAACCCATCTTCAC 60.028 50.000 0.00 0.00 0.00 3.18
4107 4249 1.695242 ACGTACAACCCATCTTCACCA 59.305 47.619 0.00 0.00 0.00 4.17
4112 4254 3.370104 ACAACCCATCTTCACCAACAAA 58.630 40.909 0.00 0.00 0.00 2.83
4113 4255 3.384467 ACAACCCATCTTCACCAACAAAG 59.616 43.478 0.00 0.00 0.00 2.77
4116 4258 1.666888 CCATCTTCACCAACAAAGCGC 60.667 52.381 0.00 0.00 0.00 5.92
4117 4259 0.598065 ATCTTCACCAACAAAGCGCC 59.402 50.000 2.29 0.00 0.00 6.53
4124 4266 1.007387 CAACAAAGCGCCCAAGACC 60.007 57.895 2.29 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.573664 TGATACAAATAAGCTTGCACAAGT 57.426 33.333 9.86 2.97 40.45 3.16
1 2 9.390795 GATATGATACAAATAAGCTTGCACAAG 57.609 33.333 9.86 6.01 41.24 3.16
2 3 8.901793 TGATATGATACAAATAAGCTTGCACAA 58.098 29.630 9.86 0.00 0.00 3.33
3 4 8.344831 GTGATATGATACAAATAAGCTTGCACA 58.655 33.333 9.86 0.00 0.00 4.57
4 5 8.562892 AGTGATATGATACAAATAAGCTTGCAC 58.437 33.333 9.86 0.00 0.00 4.57
5 6 8.681486 AGTGATATGATACAAATAAGCTTGCA 57.319 30.769 9.86 0.00 0.00 4.08
6 7 9.390795 CAAGTGATATGATACAAATAAGCTTGC 57.609 33.333 9.86 0.00 0.00 4.01
7 8 9.390795 GCAAGTGATATGATACAAATAAGCTTG 57.609 33.333 9.86 0.00 0.00 4.01
8 9 9.347240 AGCAAGTGATATGATACAAATAAGCTT 57.653 29.630 3.48 3.48 0.00 3.74
9 10 8.915057 AGCAAGTGATATGATACAAATAAGCT 57.085 30.769 0.00 0.00 0.00 3.74
10 11 9.390795 CAAGCAAGTGATATGATACAAATAAGC 57.609 33.333 0.00 0.00 0.00 3.09
11 12 9.390795 GCAAGCAAGTGATATGATACAAATAAG 57.609 33.333 0.00 0.00 0.00 1.73
12 13 9.123902 AGCAAGCAAGTGATATGATACAAATAA 57.876 29.630 0.00 0.00 0.00 1.40
13 14 8.681486 AGCAAGCAAGTGATATGATACAAATA 57.319 30.769 0.00 0.00 0.00 1.40
14 15 7.578310 AGCAAGCAAGTGATATGATACAAAT 57.422 32.000 0.00 0.00 0.00 2.32
15 16 7.094248 ACAAGCAAGCAAGTGATATGATACAAA 60.094 33.333 0.00 0.00 0.00 2.83
16 17 6.375174 ACAAGCAAGCAAGTGATATGATACAA 59.625 34.615 0.00 0.00 0.00 2.41
17 18 5.882000 ACAAGCAAGCAAGTGATATGATACA 59.118 36.000 0.00 0.00 0.00 2.29
18 19 6.183360 ACACAAGCAAGCAAGTGATATGATAC 60.183 38.462 19.05 0.00 35.97 2.24
19 20 5.882000 ACACAAGCAAGCAAGTGATATGATA 59.118 36.000 19.05 0.00 35.97 2.15
20 21 4.703575 ACACAAGCAAGCAAGTGATATGAT 59.296 37.500 19.05 0.00 35.97 2.45
21 22 4.074259 ACACAAGCAAGCAAGTGATATGA 58.926 39.130 19.05 0.00 35.97 2.15
22 23 4.430137 ACACAAGCAAGCAAGTGATATG 57.570 40.909 19.05 2.46 35.97 1.78
23 24 4.082571 GGAACACAAGCAAGCAAGTGATAT 60.083 41.667 19.05 8.31 35.97 1.63
24 25 3.253188 GGAACACAAGCAAGCAAGTGATA 59.747 43.478 19.05 0.00 35.97 2.15
25 26 2.035066 GGAACACAAGCAAGCAAGTGAT 59.965 45.455 19.05 10.43 35.97 3.06
26 27 1.405105 GGAACACAAGCAAGCAAGTGA 59.595 47.619 19.05 0.00 35.97 3.41
27 28 1.406539 AGGAACACAAGCAAGCAAGTG 59.593 47.619 13.05 13.05 37.95 3.16
28 29 1.767759 AGGAACACAAGCAAGCAAGT 58.232 45.000 0.00 0.00 0.00 3.16
29 30 4.697352 AGTATAGGAACACAAGCAAGCAAG 59.303 41.667 0.00 0.00 0.00 4.01
30 31 4.651778 AGTATAGGAACACAAGCAAGCAA 58.348 39.130 0.00 0.00 0.00 3.91
31 32 4.286297 AGTATAGGAACACAAGCAAGCA 57.714 40.909 0.00 0.00 0.00 3.91
32 33 4.455877 ACAAGTATAGGAACACAAGCAAGC 59.544 41.667 0.00 0.00 0.00 4.01
33 34 6.373779 CAACAAGTATAGGAACACAAGCAAG 58.626 40.000 0.00 0.00 0.00 4.01
34 35 5.278266 GCAACAAGTATAGGAACACAAGCAA 60.278 40.000 0.00 0.00 0.00 3.91
35 36 4.215399 GCAACAAGTATAGGAACACAAGCA 59.785 41.667 0.00 0.00 0.00 3.91
36 37 4.215399 TGCAACAAGTATAGGAACACAAGC 59.785 41.667 0.00 0.00 0.00 4.01
37 38 5.940192 TGCAACAAGTATAGGAACACAAG 57.060 39.130 0.00 0.00 0.00 3.16
38 39 6.000840 TGATGCAACAAGTATAGGAACACAA 58.999 36.000 0.00 0.00 0.00 3.33
39 40 5.555966 TGATGCAACAAGTATAGGAACACA 58.444 37.500 0.00 0.00 0.00 3.72
40 41 6.683974 ATGATGCAACAAGTATAGGAACAC 57.316 37.500 0.00 0.00 0.00 3.32
41 42 9.710900 CTATATGATGCAACAAGTATAGGAACA 57.289 33.333 13.13 0.00 0.00 3.18
42 43 9.155975 CCTATATGATGCAACAAGTATAGGAAC 57.844 37.037 25.37 0.00 41.53 3.62
43 44 8.880244 ACCTATATGATGCAACAAGTATAGGAA 58.120 33.333 30.97 4.91 41.53 3.36
44 45 8.435931 ACCTATATGATGCAACAAGTATAGGA 57.564 34.615 30.97 5.17 41.53 2.94
45 46 8.939929 CAACCTATATGATGCAACAAGTATAGG 58.060 37.037 26.60 26.60 43.24 2.57
46 47 8.446273 GCAACCTATATGATGCAACAAGTATAG 58.554 37.037 13.67 13.67 38.63 1.31
47 48 8.156820 AGCAACCTATATGATGCAACAAGTATA 58.843 33.333 11.71 0.00 41.18 1.47
48 49 7.000472 AGCAACCTATATGATGCAACAAGTAT 59.000 34.615 11.71 0.00 41.18 2.12
49 50 6.356556 AGCAACCTATATGATGCAACAAGTA 58.643 36.000 11.71 0.00 41.18 2.24
50 51 5.195940 AGCAACCTATATGATGCAACAAGT 58.804 37.500 11.71 0.00 41.18 3.16
51 52 5.297527 TGAGCAACCTATATGATGCAACAAG 59.702 40.000 11.71 0.00 41.18 3.16
52 53 5.192176 TGAGCAACCTATATGATGCAACAA 58.808 37.500 11.71 0.00 41.18 2.83
53 54 4.779696 TGAGCAACCTATATGATGCAACA 58.220 39.130 11.71 0.00 41.18 3.33
54 55 5.704515 AGATGAGCAACCTATATGATGCAAC 59.295 40.000 11.71 6.73 41.18 4.17
55 56 5.872963 AGATGAGCAACCTATATGATGCAA 58.127 37.500 11.71 1.86 41.18 4.08
56 57 5.494390 AGATGAGCAACCTATATGATGCA 57.506 39.130 11.71 0.00 41.18 3.96
57 58 6.638610 ACTAGATGAGCAACCTATATGATGC 58.361 40.000 0.00 2.62 39.06 3.91
58 59 7.064371 GCAACTAGATGAGCAACCTATATGATG 59.936 40.741 3.85 0.00 0.00 3.07
59 60 7.102346 GCAACTAGATGAGCAACCTATATGAT 58.898 38.462 3.85 0.00 0.00 2.45
60 61 6.041979 TGCAACTAGATGAGCAACCTATATGA 59.958 38.462 3.85 0.00 33.48 2.15
61 62 6.226052 TGCAACTAGATGAGCAACCTATATG 58.774 40.000 3.85 0.00 33.48 1.78
62 63 6.425210 TGCAACTAGATGAGCAACCTATAT 57.575 37.500 3.85 0.00 33.48 0.86
63 64 5.869649 TGCAACTAGATGAGCAACCTATA 57.130 39.130 3.85 0.00 33.48 1.31
64 65 4.760530 TGCAACTAGATGAGCAACCTAT 57.239 40.909 3.85 0.00 33.48 2.57
65 66 4.760530 ATGCAACTAGATGAGCAACCTA 57.239 40.909 3.85 0.00 40.76 3.08
66 67 3.641434 ATGCAACTAGATGAGCAACCT 57.359 42.857 3.85 0.00 40.76 3.50
67 68 5.303971 AGATATGCAACTAGATGAGCAACC 58.696 41.667 3.85 0.00 40.76 3.77
68 69 7.328249 GTCTAGATATGCAACTAGATGAGCAAC 59.672 40.741 22.17 11.07 44.12 4.17
69 70 7.014615 TGTCTAGATATGCAACTAGATGAGCAA 59.985 37.037 22.17 9.21 44.12 3.91
70 71 6.491403 TGTCTAGATATGCAACTAGATGAGCA 59.509 38.462 22.17 15.89 44.12 4.26
71 72 6.918626 TGTCTAGATATGCAACTAGATGAGC 58.081 40.000 22.17 14.31 44.12 4.26
72 73 7.812191 GGTTGTCTAGATATGCAACTAGATGAG 59.188 40.741 22.17 5.93 44.12 2.90
73 74 7.507277 AGGTTGTCTAGATATGCAACTAGATGA 59.493 37.037 22.17 14.99 44.12 2.92
74 75 7.665690 AGGTTGTCTAGATATGCAACTAGATG 58.334 38.462 22.17 0.00 44.12 2.90
75 76 7.847711 AGGTTGTCTAGATATGCAACTAGAT 57.152 36.000 22.17 10.38 44.12 1.98
76 77 7.999545 AGTAGGTTGTCTAGATATGCAACTAGA 59.000 37.037 18.23 18.21 41.50 2.43
77 78 8.172352 AGTAGGTTGTCTAGATATGCAACTAG 57.828 38.462 18.23 15.26 40.49 2.57
78 79 8.534954 AAGTAGGTTGTCTAGATATGCAACTA 57.465 34.615 18.23 9.66 40.49 2.24
79 80 7.425224 AAGTAGGTTGTCTAGATATGCAACT 57.575 36.000 18.23 7.55 40.49 3.16
80 81 7.764443 TCAAAGTAGGTTGTCTAGATATGCAAC 59.236 37.037 13.07 13.07 40.08 4.17
81 82 7.847096 TCAAAGTAGGTTGTCTAGATATGCAA 58.153 34.615 0.00 0.00 0.00 4.08
82 83 7.418337 TCAAAGTAGGTTGTCTAGATATGCA 57.582 36.000 0.00 0.00 0.00 3.96
83 84 7.095439 GCATCAAAGTAGGTTGTCTAGATATGC 60.095 40.741 0.00 0.00 0.00 3.14
84 85 7.928167 TGCATCAAAGTAGGTTGTCTAGATATG 59.072 37.037 0.00 0.00 0.00 1.78
85 86 8.023021 TGCATCAAAGTAGGTTGTCTAGATAT 57.977 34.615 0.00 0.00 0.00 1.63
86 87 7.418337 TGCATCAAAGTAGGTTGTCTAGATA 57.582 36.000 0.00 0.00 0.00 1.98
87 88 6.299805 TGCATCAAAGTAGGTTGTCTAGAT 57.700 37.500 0.00 0.00 0.00 1.98
88 89 5.738619 TGCATCAAAGTAGGTTGTCTAGA 57.261 39.130 0.00 0.00 0.00 2.43
89 90 6.801539 TTTGCATCAAAGTAGGTTGTCTAG 57.198 37.500 0.00 0.00 0.00 2.43
90 91 6.801539 CTTTGCATCAAAGTAGGTTGTCTA 57.198 37.500 10.28 0.00 43.85 2.59
91 92 5.695851 CTTTGCATCAAAGTAGGTTGTCT 57.304 39.130 10.28 0.00 43.85 3.41
126 127 8.826710 GGCAACTAACAATTTTTAGCTTTTCTT 58.173 29.630 10.61 0.00 33.02 2.52
127 128 8.365399 GGCAACTAACAATTTTTAGCTTTTCT 57.635 30.769 10.61 0.00 33.02 2.52
160 161 2.563179 CGATATGGTTGACTAGAGGGGG 59.437 54.545 0.00 0.00 0.00 5.40
161 162 3.497332 TCGATATGGTTGACTAGAGGGG 58.503 50.000 0.00 0.00 0.00 4.79
162 163 4.158764 GGATCGATATGGTTGACTAGAGGG 59.841 50.000 0.00 0.00 0.00 4.30
163 164 5.013547 AGGATCGATATGGTTGACTAGAGG 58.986 45.833 0.00 0.00 0.00 3.69
164 165 6.582677 AAGGATCGATATGGTTGACTAGAG 57.417 41.667 0.00 0.00 0.00 2.43
165 166 6.549736 TGAAAGGATCGATATGGTTGACTAGA 59.450 38.462 0.00 0.00 0.00 2.43
166 167 6.642950 GTGAAAGGATCGATATGGTTGACTAG 59.357 42.308 0.00 0.00 0.00 2.57
167 168 6.462487 GGTGAAAGGATCGATATGGTTGACTA 60.462 42.308 0.00 0.00 0.00 2.59
168 169 5.360591 GTGAAAGGATCGATATGGTTGACT 58.639 41.667 0.00 0.00 0.00 3.41
169 170 4.511826 GGTGAAAGGATCGATATGGTTGAC 59.488 45.833 0.00 0.00 0.00 3.18
170 171 4.408921 AGGTGAAAGGATCGATATGGTTGA 59.591 41.667 0.00 0.00 0.00 3.18
171 172 4.708177 AGGTGAAAGGATCGATATGGTTG 58.292 43.478 0.00 0.00 0.00 3.77
172 173 5.511545 GCTAGGTGAAAGGATCGATATGGTT 60.512 44.000 0.00 0.00 0.00 3.67
173 174 4.021016 GCTAGGTGAAAGGATCGATATGGT 60.021 45.833 0.00 0.00 0.00 3.55
174 175 4.021104 TGCTAGGTGAAAGGATCGATATGG 60.021 45.833 0.00 0.00 0.00 2.74
175 176 5.139435 TGCTAGGTGAAAGGATCGATATG 57.861 43.478 0.00 0.00 0.00 1.78
176 177 5.728471 CATGCTAGGTGAAAGGATCGATAT 58.272 41.667 0.00 0.00 0.00 1.63
177 178 4.561530 GCATGCTAGGTGAAAGGATCGATA 60.562 45.833 11.37 0.00 0.00 2.92
178 179 3.805108 GCATGCTAGGTGAAAGGATCGAT 60.805 47.826 11.37 0.00 0.00 3.59
179 180 2.483714 GCATGCTAGGTGAAAGGATCGA 60.484 50.000 11.37 0.00 0.00 3.59
180 181 1.869767 GCATGCTAGGTGAAAGGATCG 59.130 52.381 11.37 0.00 0.00 3.69
181 182 2.923121 TGCATGCTAGGTGAAAGGATC 58.077 47.619 20.33 0.00 0.00 3.36
182 183 3.370840 TTGCATGCTAGGTGAAAGGAT 57.629 42.857 20.33 0.00 0.00 3.24
183 184 2.877097 TTGCATGCTAGGTGAAAGGA 57.123 45.000 20.33 0.00 0.00 3.36
184 185 3.256631 AGTTTTGCATGCTAGGTGAAAGG 59.743 43.478 20.33 0.00 0.00 3.11
185 186 4.510038 AGTTTTGCATGCTAGGTGAAAG 57.490 40.909 20.33 0.00 0.00 2.62
186 187 4.619973 CAAGTTTTGCATGCTAGGTGAAA 58.380 39.130 20.33 6.89 0.00 2.69
187 188 4.241590 CAAGTTTTGCATGCTAGGTGAA 57.758 40.909 20.33 0.00 0.00 3.18
237 238 3.717294 GACACCCCATGACGGCCT 61.717 66.667 0.00 0.00 0.00 5.19
351 382 7.365295 GGGTGGTTACCTAGAAATGATTAGTCA 60.365 40.741 2.07 0.00 46.66 3.41
352 383 6.990939 GGGTGGTTACCTAGAAATGATTAGTC 59.009 42.308 2.07 0.00 46.66 2.59
364 395 2.769663 TGCACTATGGGTGGTTACCTAG 59.230 50.000 2.07 0.00 46.66 3.02
376 407 0.602106 CGCAGAGGGATGCACTATGG 60.602 60.000 0.00 0.00 46.87 2.74
472 514 6.932400 ACACGAACCAATCTAAAACTATGTCA 59.068 34.615 0.00 0.00 0.00 3.58
495 537 3.792736 GATGGCTACCCCCGCACA 61.793 66.667 0.00 0.00 0.00 4.57
496 538 4.910585 CGATGGCTACCCCCGCAC 62.911 72.222 0.00 0.00 0.00 5.34
569 611 1.076727 TGTCTCTCCGCCTCCTCAA 59.923 57.895 0.00 0.00 0.00 3.02
615 679 3.305177 TAGGACGCCGGCTTTCACC 62.305 63.158 26.68 18.75 0.00 4.02
619 683 1.946475 GAGACTAGGACGCCGGCTTT 61.946 60.000 26.68 11.62 0.00 3.51
631 695 0.106918 AGCCCGTCCTCTGAGACTAG 60.107 60.000 6.17 0.00 34.46 2.57
632 696 0.394488 CAGCCCGTCCTCTGAGACTA 60.394 60.000 6.17 0.00 34.46 2.59
660 724 1.112950 CCTTCCTCCTCCTTCGGTAC 58.887 60.000 0.00 0.00 0.00 3.34
663 727 1.964933 GTATCCTTCCTCCTCCTTCGG 59.035 57.143 0.00 0.00 0.00 4.30
712 777 3.181455 TGAGCATTGGTGTCTACTGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
745 860 6.913170 ACTAACAAAAATGGCTGAGTGTATG 58.087 36.000 0.00 0.00 0.00 2.39
755 870 5.571357 CCGATACACAACTAACAAAAATGGC 59.429 40.000 0.00 0.00 0.00 4.40
769 884 2.555325 ACTTCTGACGTCCGATACACAA 59.445 45.455 14.12 0.00 0.00 3.33
783 898 1.142870 CAACCCCAACTCCACTTCTGA 59.857 52.381 0.00 0.00 0.00 3.27
790 905 1.217916 TGAGTTCAACCCCAACTCCA 58.782 50.000 9.50 0.00 46.35 3.86
852 967 7.581213 AATTGTGTACTCATTTTCTCAACCA 57.419 32.000 0.00 0.00 0.00 3.67
884 999 5.689383 TCTTGTGTACTCATTTTTGGCTC 57.311 39.130 0.00 0.00 0.00 4.70
905 1020 4.020128 ACTGAGATCTAACCACACCCTTTC 60.020 45.833 0.00 0.00 0.00 2.62
1013 1137 7.530525 ACGAAATCGCGATCAACATTATATTTG 59.469 33.333 23.92 14.23 44.43 2.32
1023 1147 2.601763 ACCTAACGAAATCGCGATCAAC 59.398 45.455 23.92 14.98 44.43 3.18
1026 1150 2.728922 AGACCTAACGAAATCGCGATC 58.271 47.619 23.92 11.16 44.43 3.69
1028 1152 2.642139 AAGACCTAACGAAATCGCGA 57.358 45.000 13.09 13.09 44.43 5.87
1029 1153 3.432782 ACTAAGACCTAACGAAATCGCG 58.567 45.455 0.00 0.00 44.43 5.87
1031 1155 6.033619 CAGTCAACTAAGACCTAACGAAATCG 59.966 42.308 0.48 0.48 41.32 3.34
1034 1158 6.263842 TCTCAGTCAACTAAGACCTAACGAAA 59.736 38.462 0.00 0.00 39.34 3.46
1042 1166 6.398918 TGCTAAATCTCAGTCAACTAAGACC 58.601 40.000 0.00 0.00 39.34 3.85
1052 1176 3.001736 GTGCGGATTGCTAAATCTCAGTC 59.998 47.826 0.00 0.00 46.63 3.51
1093 1217 9.367444 CCTTACATCTATTTCTTGTTACGTCTT 57.633 33.333 0.00 0.00 0.00 3.01
1098 1222 6.537660 ACCGCCTTACATCTATTTCTTGTTAC 59.462 38.462 0.00 0.00 0.00 2.50
1100 1224 5.497474 ACCGCCTTACATCTATTTCTTGTT 58.503 37.500 0.00 0.00 0.00 2.83
1108 1232 4.081087 AGTGAACAACCGCCTTACATCTAT 60.081 41.667 0.00 0.00 0.00 1.98
1150 1274 2.046700 CGGTTGCCCACATACGGT 60.047 61.111 0.00 0.00 0.00 4.83
1153 1277 3.138128 GCCCGGTTGCCCACATAC 61.138 66.667 0.00 0.00 0.00 2.39
1283 1407 0.909610 TGGGTTGTGGCTAGGAGGAG 60.910 60.000 0.00 0.00 0.00 3.69
1363 1487 4.586235 GGGGGATGGATGCCGTGG 62.586 72.222 0.00 0.00 39.48 4.94
1505 1629 3.807538 GTCCAGAGTACGCGGCGA 61.808 66.667 30.94 10.01 0.00 5.54
1514 1638 3.063084 GCCTCGGACGTCCAGAGT 61.063 66.667 33.89 0.00 36.00 3.24
1628 1752 2.257676 GACGCGTCCGGTTCTCTT 59.742 61.111 28.61 0.00 39.22 2.85
1647 1771 2.868196 CAGCTTCGACTCCGACGA 59.132 61.111 0.00 0.00 45.50 4.20
1650 1774 2.568612 CAGCAGCTTCGACTCCGA 59.431 61.111 0.00 0.00 43.96 4.55
1665 1789 4.778415 CACGACCTCCGCGTCCAG 62.778 72.222 4.92 0.00 40.44 3.86
1667 1791 4.773117 GACACGACCTCCGCGTCC 62.773 72.222 4.92 0.00 42.63 4.79
1707 1831 3.589988 AGAAGTGTGAACCATCATCGAC 58.410 45.455 0.00 0.00 38.01 4.20
1708 1832 3.961480 AGAAGTGTGAACCATCATCGA 57.039 42.857 0.00 0.00 38.01 3.59
1709 1833 4.248859 AGAAGAAGTGTGAACCATCATCG 58.751 43.478 0.00 0.00 38.01 3.84
1710 1834 4.328440 CGAGAAGAAGTGTGAACCATCATC 59.672 45.833 0.00 0.00 38.01 2.92
1711 1835 4.248859 CGAGAAGAAGTGTGAACCATCAT 58.751 43.478 0.00 0.00 38.01 2.45
1718 1842 1.873903 GCCAGCGAGAAGAAGTGTGAA 60.874 52.381 0.00 0.00 0.00 3.18
1721 1845 1.373497 CGCCAGCGAGAAGAAGTGT 60.373 57.895 6.06 0.00 42.83 3.55
1723 1847 2.433318 GCGCCAGCGAGAAGAAGT 60.433 61.111 17.53 0.00 42.83 3.01
1739 1863 0.459934 AGAAGAGACGCATGAGCAGC 60.460 55.000 0.00 0.00 42.27 5.25
1751 1875 2.047844 GCGCACAGCCAGAAGAGA 60.048 61.111 0.30 0.00 40.81 3.10
2231 2355 1.133407 GTATGTTGTCGACGTGCACA 58.867 50.000 18.64 11.16 31.03 4.57
2300 2424 2.281692 TCGACGTCGTCTTCCCCA 60.282 61.111 34.40 12.61 40.80 4.96
2302 2426 2.202272 CGTCGACGTCGTCTTCCC 60.202 66.667 34.40 16.39 40.80 3.97
2331 2455 2.463589 AAATGCCTCTCGCCGTCCAA 62.464 55.000 0.00 0.00 36.24 3.53
2381 2505 1.091771 CGTAGGACGAGCCGAACCTA 61.092 60.000 14.85 14.85 46.05 3.08
2825 2949 0.835543 AGCTCAGCCAGACCTTGAGT 60.836 55.000 0.00 0.00 40.29 3.41
2949 3073 6.107343 GGAAGGGTCATTACAGTTCTTAGTC 58.893 44.000 0.00 0.00 0.00 2.59
2976 3105 5.738619 AAGAATTTTGGGATGGTGGTAAC 57.261 39.130 0.00 0.00 0.00 2.50
2977 3106 8.442660 AAATAAGAATTTTGGGATGGTGGTAA 57.557 30.769 0.00 0.00 30.98 2.85
2978 3107 8.442660 AAAATAAGAATTTTGGGATGGTGGTA 57.557 30.769 0.00 0.00 42.41 3.25
2979 3108 6.950860 AAATAAGAATTTTGGGATGGTGGT 57.049 33.333 0.00 0.00 30.98 4.16
2980 3109 8.757877 TCTAAAATAAGAATTTTGGGATGGTGG 58.242 33.333 6.39 0.00 43.52 4.61
3004 3133 9.236006 GGTAATATGCAAGGATCATGTAAATCT 57.764 33.333 0.00 0.00 0.00 2.40
3005 3134 9.013229 TGGTAATATGCAAGGATCATGTAAATC 57.987 33.333 0.00 0.00 0.00 2.17
3006 3135 8.938801 TGGTAATATGCAAGGATCATGTAAAT 57.061 30.769 0.00 0.00 0.00 1.40
3007 3136 8.938801 ATGGTAATATGCAAGGATCATGTAAA 57.061 30.769 0.00 0.00 0.00 2.01
3008 3137 8.162746 TGATGGTAATATGCAAGGATCATGTAA 58.837 33.333 0.00 0.00 0.00 2.41
3009 3138 7.688343 TGATGGTAATATGCAAGGATCATGTA 58.312 34.615 0.00 0.00 0.00 2.29
3010 3139 6.545567 TGATGGTAATATGCAAGGATCATGT 58.454 36.000 0.00 0.00 0.00 3.21
3011 3140 7.201794 GGATGATGGTAATATGCAAGGATCATG 60.202 40.741 0.00 0.00 31.15 3.07
3012 3141 6.832384 GGATGATGGTAATATGCAAGGATCAT 59.168 38.462 0.00 0.00 33.14 2.45
3013 3142 6.012245 AGGATGATGGTAATATGCAAGGATCA 60.012 38.462 0.00 0.00 0.00 2.92
3014 3143 6.421485 AGGATGATGGTAATATGCAAGGATC 58.579 40.000 0.00 0.00 0.00 3.36
3015 3144 6.398655 AGGATGATGGTAATATGCAAGGAT 57.601 37.500 0.00 0.00 0.00 3.24
3016 3145 5.848286 AGGATGATGGTAATATGCAAGGA 57.152 39.130 0.00 0.00 0.00 3.36
3017 3146 8.408043 TTTTAGGATGATGGTAATATGCAAGG 57.592 34.615 0.00 0.00 0.00 3.61
3020 3149 9.812347 AGAATTTTAGGATGATGGTAATATGCA 57.188 29.630 0.00 0.00 0.00 3.96
3042 3171 9.367444 CCTACGTCACTAATCTAAAACAAGAAT 57.633 33.333 0.00 0.00 0.00 2.40
3043 3172 7.816031 CCCTACGTCACTAATCTAAAACAAGAA 59.184 37.037 0.00 0.00 0.00 2.52
3044 3173 7.177216 TCCCTACGTCACTAATCTAAAACAAGA 59.823 37.037 0.00 0.00 0.00 3.02
3045 3174 7.318141 TCCCTACGTCACTAATCTAAAACAAG 58.682 38.462 0.00 0.00 0.00 3.16
3046 3175 7.039504 ACTCCCTACGTCACTAATCTAAAACAA 60.040 37.037 0.00 0.00 0.00 2.83
3047 3176 6.435277 ACTCCCTACGTCACTAATCTAAAACA 59.565 38.462 0.00 0.00 0.00 2.83
3048 3177 6.861144 ACTCCCTACGTCACTAATCTAAAAC 58.139 40.000 0.00 0.00 0.00 2.43
3049 3178 7.611467 TGTACTCCCTACGTCACTAATCTAAAA 59.389 37.037 0.00 0.00 0.00 1.52
3050 3179 7.112122 TGTACTCCCTACGTCACTAATCTAAA 58.888 38.462 0.00 0.00 0.00 1.85
3051 3180 6.653020 TGTACTCCCTACGTCACTAATCTAA 58.347 40.000 0.00 0.00 0.00 2.10
3052 3181 6.239217 TGTACTCCCTACGTCACTAATCTA 57.761 41.667 0.00 0.00 0.00 1.98
3053 3182 5.108187 TGTACTCCCTACGTCACTAATCT 57.892 43.478 0.00 0.00 0.00 2.40
3054 3183 5.587844 TCTTGTACTCCCTACGTCACTAATC 59.412 44.000 0.00 0.00 0.00 1.75
3055 3184 5.503927 TCTTGTACTCCCTACGTCACTAAT 58.496 41.667 0.00 0.00 0.00 1.73
3056 3185 4.910195 TCTTGTACTCCCTACGTCACTAA 58.090 43.478 0.00 0.00 0.00 2.24
3057 3186 4.558226 TCTTGTACTCCCTACGTCACTA 57.442 45.455 0.00 0.00 0.00 2.74
3058 3187 3.430042 TCTTGTACTCCCTACGTCACT 57.570 47.619 0.00 0.00 0.00 3.41
3059 3188 4.217118 TCTTTCTTGTACTCCCTACGTCAC 59.783 45.833 0.00 0.00 0.00 3.67
3060 3189 4.401022 TCTTTCTTGTACTCCCTACGTCA 58.599 43.478 0.00 0.00 0.00 4.35
3061 3190 5.382618 TTCTTTCTTGTACTCCCTACGTC 57.617 43.478 0.00 0.00 0.00 4.34
3062 3191 5.796424 TTTCTTTCTTGTACTCCCTACGT 57.204 39.130 0.00 0.00 0.00 3.57
3063 3192 6.927381 TCTTTTTCTTTCTTGTACTCCCTACG 59.073 38.462 0.00 0.00 0.00 3.51
3064 3193 8.557864 GTTCTTTTTCTTTCTTGTACTCCCTAC 58.442 37.037 0.00 0.00 0.00 3.18
3065 3194 8.269317 TGTTCTTTTTCTTTCTTGTACTCCCTA 58.731 33.333 0.00 0.00 0.00 3.53
3066 3195 7.116736 TGTTCTTTTTCTTTCTTGTACTCCCT 58.883 34.615 0.00 0.00 0.00 4.20
3067 3196 7.329588 TGTTCTTTTTCTTTCTTGTACTCCC 57.670 36.000 0.00 0.00 0.00 4.30
3068 3197 7.862873 CCATGTTCTTTTTCTTTCTTGTACTCC 59.137 37.037 0.00 0.00 0.00 3.85
3069 3198 7.862873 CCCATGTTCTTTTTCTTTCTTGTACTC 59.137 37.037 0.00 0.00 0.00 2.59
3070 3199 7.559897 TCCCATGTTCTTTTTCTTTCTTGTACT 59.440 33.333 0.00 0.00 0.00 2.73
3071 3200 7.712797 TCCCATGTTCTTTTTCTTTCTTGTAC 58.287 34.615 0.00 0.00 0.00 2.90
3072 3201 7.889873 TCCCATGTTCTTTTTCTTTCTTGTA 57.110 32.000 0.00 0.00 0.00 2.41
3073 3202 6.790232 TCCCATGTTCTTTTTCTTTCTTGT 57.210 33.333 0.00 0.00 0.00 3.16
3074 3203 8.667076 AAATCCCATGTTCTTTTTCTTTCTTG 57.333 30.769 0.00 0.00 0.00 3.02
3075 3204 7.933577 GGAAATCCCATGTTCTTTTTCTTTCTT 59.066 33.333 0.00 0.00 34.14 2.52
3076 3205 7.445121 GGAAATCCCATGTTCTTTTTCTTTCT 58.555 34.615 0.00 0.00 34.14 2.52
3077 3206 7.658179 GGAAATCCCATGTTCTTTTTCTTTC 57.342 36.000 0.00 0.00 34.14 2.62
3094 3223 6.140377 TCAAATATAGGTTTGGGGGAAATCC 58.860 40.000 0.21 0.00 39.10 3.01
3095 3224 7.344612 ACTTCAAATATAGGTTTGGGGGAAATC 59.655 37.037 0.21 0.00 39.10 2.17
3096 3225 7.125659 CACTTCAAATATAGGTTTGGGGGAAAT 59.874 37.037 0.21 0.00 39.10 2.17
3097 3226 6.439058 CACTTCAAATATAGGTTTGGGGGAAA 59.561 38.462 0.21 0.00 39.10 3.13
3098 3227 5.955355 CACTTCAAATATAGGTTTGGGGGAA 59.045 40.000 0.21 0.00 39.10 3.97
3099 3228 5.254267 TCACTTCAAATATAGGTTTGGGGGA 59.746 40.000 0.21 0.00 39.10 4.81
3100 3229 5.515106 TCACTTCAAATATAGGTTTGGGGG 58.485 41.667 0.21 0.00 39.10 5.40
3101 3230 7.475137 TTTCACTTCAAATATAGGTTTGGGG 57.525 36.000 0.21 0.00 39.10 4.96
3124 3253 4.950205 TGAGACGGAGGAGTTACTTTTT 57.050 40.909 0.00 0.00 0.00 1.94
3125 3254 4.950205 TTGAGACGGAGGAGTTACTTTT 57.050 40.909 0.00 0.00 0.00 2.27
3126 3255 4.950205 TTTGAGACGGAGGAGTTACTTT 57.050 40.909 0.00 0.00 0.00 2.66
3127 3256 4.950205 TTTTGAGACGGAGGAGTTACTT 57.050 40.909 0.00 0.00 0.00 2.24
3128 3257 6.600882 TTATTTTGAGACGGAGGAGTTACT 57.399 37.500 0.00 0.00 0.00 2.24
3129 3258 7.333672 ACATTTATTTTGAGACGGAGGAGTTAC 59.666 37.037 0.00 0.00 0.00 2.50
3130 3259 7.391620 ACATTTATTTTGAGACGGAGGAGTTA 58.608 34.615 0.00 0.00 0.00 2.24
3131 3260 6.238648 ACATTTATTTTGAGACGGAGGAGTT 58.761 36.000 0.00 0.00 0.00 3.01
3132 3261 5.805728 ACATTTATTTTGAGACGGAGGAGT 58.194 37.500 0.00 0.00 0.00 3.85
3133 3262 5.294552 GGACATTTATTTTGAGACGGAGGAG 59.705 44.000 0.00 0.00 0.00 3.69
3134 3263 5.045869 AGGACATTTATTTTGAGACGGAGGA 60.046 40.000 0.00 0.00 0.00 3.71
3135 3264 5.186198 AGGACATTTATTTTGAGACGGAGG 58.814 41.667 0.00 0.00 0.00 4.30
3136 3265 7.549488 AGTTAGGACATTTATTTTGAGACGGAG 59.451 37.037 0.00 0.00 0.00 4.63
3137 3266 7.391620 AGTTAGGACATTTATTTTGAGACGGA 58.608 34.615 0.00 0.00 0.00 4.69
3138 3267 7.611213 AGTTAGGACATTTATTTTGAGACGG 57.389 36.000 0.00 0.00 0.00 4.79
3139 3268 8.818057 CCTAGTTAGGACATTTATTTTGAGACG 58.182 37.037 0.00 0.00 46.63 4.18
3140 3269 9.110502 CCCTAGTTAGGACATTTATTTTGAGAC 57.889 37.037 6.77 0.00 46.63 3.36
3141 3270 9.053472 TCCCTAGTTAGGACATTTATTTTGAGA 57.947 33.333 6.77 0.00 46.63 3.27
3142 3271 9.681062 TTCCCTAGTTAGGACATTTATTTTGAG 57.319 33.333 6.77 0.00 46.63 3.02
3143 3272 9.681062 CTTCCCTAGTTAGGACATTTATTTTGA 57.319 33.333 6.77 0.00 46.63 2.69
3144 3273 8.903820 CCTTCCCTAGTTAGGACATTTATTTTG 58.096 37.037 6.77 0.00 46.63 2.44
3145 3274 8.621073 ACCTTCCCTAGTTAGGACATTTATTTT 58.379 33.333 6.77 0.00 46.63 1.82
3146 3275 8.171337 ACCTTCCCTAGTTAGGACATTTATTT 57.829 34.615 6.77 0.00 46.63 1.40
3147 3276 7.766736 ACCTTCCCTAGTTAGGACATTTATT 57.233 36.000 6.77 0.00 46.63 1.40
3148 3277 7.184022 ACAACCTTCCCTAGTTAGGACATTTAT 59.816 37.037 6.77 0.00 46.63 1.40
3149 3278 6.502863 ACAACCTTCCCTAGTTAGGACATTTA 59.497 38.462 6.77 0.00 46.63 1.40
3150 3279 5.312443 ACAACCTTCCCTAGTTAGGACATTT 59.688 40.000 6.77 0.00 46.63 2.32
3151 3280 4.850386 ACAACCTTCCCTAGTTAGGACATT 59.150 41.667 6.77 0.00 46.63 2.71
3152 3281 4.436079 ACAACCTTCCCTAGTTAGGACAT 58.564 43.478 6.77 0.00 46.63 3.06
3153 3282 3.865571 ACAACCTTCCCTAGTTAGGACA 58.134 45.455 6.77 0.00 46.63 4.02
3154 3283 6.556974 AATACAACCTTCCCTAGTTAGGAC 57.443 41.667 6.77 0.00 46.63 3.85
3155 3284 7.655403 TCTAATACAACCTTCCCTAGTTAGGA 58.345 38.462 6.77 0.00 46.63 2.94
3156 3285 7.909485 TCTAATACAACCTTCCCTAGTTAGG 57.091 40.000 0.00 0.00 43.25 2.69
3157 3286 8.368668 CCATCTAATACAACCTTCCCTAGTTAG 58.631 40.741 0.00 0.00 0.00 2.34
3158 3287 7.202066 GCCATCTAATACAACCTTCCCTAGTTA 60.202 40.741 0.00 0.00 0.00 2.24
3159 3288 6.409349 GCCATCTAATACAACCTTCCCTAGTT 60.409 42.308 0.00 0.00 0.00 2.24
3160 3289 5.071923 GCCATCTAATACAACCTTCCCTAGT 59.928 44.000 0.00 0.00 0.00 2.57
3161 3290 5.308237 AGCCATCTAATACAACCTTCCCTAG 59.692 44.000 0.00 0.00 0.00 3.02
3162 3291 5.224441 AGCCATCTAATACAACCTTCCCTA 58.776 41.667 0.00 0.00 0.00 3.53
3163 3292 4.047883 AGCCATCTAATACAACCTTCCCT 58.952 43.478 0.00 0.00 0.00 4.20
3164 3293 4.439253 AGCCATCTAATACAACCTTCCC 57.561 45.455 0.00 0.00 0.00 3.97
3165 3294 9.569122 TTATAAAGCCATCTAATACAACCTTCC 57.431 33.333 0.00 0.00 0.00 3.46
3173 3302 9.678941 GCCAAGTTTTATAAAGCCATCTAATAC 57.321 33.333 8.28 0.00 0.00 1.89
3174 3303 9.640952 AGCCAAGTTTTATAAAGCCATCTAATA 57.359 29.630 8.28 0.00 0.00 0.98
3175 3304 8.539117 AGCCAAGTTTTATAAAGCCATCTAAT 57.461 30.769 8.28 0.00 0.00 1.73
3176 3305 7.068226 GGAGCCAAGTTTTATAAAGCCATCTAA 59.932 37.037 8.28 0.00 0.00 2.10
3177 3306 6.546034 GGAGCCAAGTTTTATAAAGCCATCTA 59.454 38.462 8.28 0.00 0.00 1.98
3178 3307 5.360999 GGAGCCAAGTTTTATAAAGCCATCT 59.639 40.000 8.28 2.02 0.00 2.90
3179 3308 5.127031 TGGAGCCAAGTTTTATAAAGCCATC 59.873 40.000 8.28 0.00 0.00 3.51
3180 3309 5.022787 TGGAGCCAAGTTTTATAAAGCCAT 58.977 37.500 8.28 0.00 0.00 4.40
3181 3310 4.411927 TGGAGCCAAGTTTTATAAAGCCA 58.588 39.130 8.28 0.00 0.00 4.75
3182 3311 5.105351 ACATGGAGCCAAGTTTTATAAAGCC 60.105 40.000 8.28 0.00 0.00 4.35
3183 3312 5.807011 CACATGGAGCCAAGTTTTATAAAGC 59.193 40.000 4.02 4.02 0.00 3.51
3184 3313 5.807011 GCACATGGAGCCAAGTTTTATAAAG 59.193 40.000 0.00 0.00 0.00 1.85
3185 3314 5.719173 GCACATGGAGCCAAGTTTTATAAA 58.281 37.500 0.00 0.00 0.00 1.40
3186 3315 5.323371 GCACATGGAGCCAAGTTTTATAA 57.677 39.130 0.00 0.00 0.00 0.98
3187 3316 4.981806 GCACATGGAGCCAAGTTTTATA 57.018 40.909 0.00 0.00 0.00 0.98
3188 3317 3.874392 GCACATGGAGCCAAGTTTTAT 57.126 42.857 0.00 0.00 0.00 1.40
3198 3327 4.819761 TCGCGAGGCACATGGAGC 62.820 66.667 3.71 0.00 0.00 4.70
3199 3328 2.584418 CTCGCGAGGCACATGGAG 60.584 66.667 28.40 0.00 0.00 3.86
3200 3329 3.381983 ACTCGCGAGGCACATGGA 61.382 61.111 36.93 0.00 0.00 3.41
3201 3330 3.190849 CACTCGCGAGGCACATGG 61.191 66.667 36.93 13.46 0.00 3.66
3202 3331 3.190849 CCACTCGCGAGGCACATG 61.191 66.667 36.93 25.36 0.00 3.21
3203 3332 4.457496 CCCACTCGCGAGGCACAT 62.457 66.667 36.93 15.66 0.00 3.21
3205 3334 3.291101 TAACCCACTCGCGAGGCAC 62.291 63.158 36.93 0.00 0.00 5.01
3206 3335 2.992689 TAACCCACTCGCGAGGCA 60.993 61.111 36.93 14.17 0.00 4.75
3207 3336 2.202756 CTAACCCACTCGCGAGGC 60.203 66.667 36.93 0.00 0.00 4.70
3208 3337 2.202756 GCTAACCCACTCGCGAGG 60.203 66.667 36.93 24.41 0.00 4.63
3209 3338 1.226717 GAGCTAACCCACTCGCGAG 60.227 63.158 33.45 33.45 0.00 5.03
3210 3339 2.882876 GAGCTAACCCACTCGCGA 59.117 61.111 9.26 9.26 0.00 5.87
3214 3343 0.971447 ACCTCCGAGCTAACCCACTC 60.971 60.000 0.00 0.00 0.00 3.51
3215 3344 0.544595 AACCTCCGAGCTAACCCACT 60.545 55.000 0.00 0.00 0.00 4.00
3216 3345 0.391263 CAACCTCCGAGCTAACCCAC 60.391 60.000 0.00 0.00 0.00 4.61
3217 3346 1.980052 CAACCTCCGAGCTAACCCA 59.020 57.895 0.00 0.00 0.00 4.51
3218 3347 1.449778 GCAACCTCCGAGCTAACCC 60.450 63.158 0.00 0.00 0.00 4.11
3219 3348 1.019805 GTGCAACCTCCGAGCTAACC 61.020 60.000 0.00 0.00 0.00 2.85
3220 3349 1.352156 CGTGCAACCTCCGAGCTAAC 61.352 60.000 0.00 0.00 0.00 2.34
3221 3350 1.080093 CGTGCAACCTCCGAGCTAA 60.080 57.895 0.00 0.00 0.00 3.09
3222 3351 1.934220 CTCGTGCAACCTCCGAGCTA 61.934 60.000 10.25 0.00 41.21 3.32
3223 3352 3.288308 CTCGTGCAACCTCCGAGCT 62.288 63.158 10.25 0.00 41.21 4.09
3224 3353 2.765250 TTCTCGTGCAACCTCCGAGC 62.765 60.000 16.39 0.00 45.71 5.03
3226 3355 1.289066 CTTCTCGTGCAACCTCCGA 59.711 57.895 0.00 0.00 0.00 4.55
3227 3356 1.738099 CCTTCTCGTGCAACCTCCG 60.738 63.158 0.00 0.00 0.00 4.63
3228 3357 0.390472 CTCCTTCTCGTGCAACCTCC 60.390 60.000 0.00 0.00 0.00 4.30
3229 3358 1.016653 GCTCCTTCTCGTGCAACCTC 61.017 60.000 0.00 0.00 0.00 3.85
3230 3359 1.004440 GCTCCTTCTCGTGCAACCT 60.004 57.895 0.00 0.00 0.00 3.50
3231 3360 0.246635 TAGCTCCTTCTCGTGCAACC 59.753 55.000 0.00 0.00 0.00 3.77
3232 3361 1.929836 CATAGCTCCTTCTCGTGCAAC 59.070 52.381 0.00 0.00 0.00 4.17
3233 3362 1.134699 CCATAGCTCCTTCTCGTGCAA 60.135 52.381 0.00 0.00 0.00 4.08
3234 3363 0.461548 CCATAGCTCCTTCTCGTGCA 59.538 55.000 0.00 0.00 0.00 4.57
3235 3364 0.747255 TCCATAGCTCCTTCTCGTGC 59.253 55.000 0.00 0.00 0.00 5.34
3236 3365 1.751351 TGTCCATAGCTCCTTCTCGTG 59.249 52.381 0.00 0.00 0.00 4.35
3237 3366 2.145397 TGTCCATAGCTCCTTCTCGT 57.855 50.000 0.00 0.00 0.00 4.18
3238 3367 3.068732 TCAATGTCCATAGCTCCTTCTCG 59.931 47.826 0.00 0.00 0.00 4.04
3239 3368 4.679373 TCAATGTCCATAGCTCCTTCTC 57.321 45.455 0.00 0.00 0.00 2.87
3240 3369 5.643421 ATTCAATGTCCATAGCTCCTTCT 57.357 39.130 0.00 0.00 0.00 2.85
3241 3370 7.500559 ACTTTATTCAATGTCCATAGCTCCTTC 59.499 37.037 0.00 0.00 0.00 3.46
3242 3371 7.284034 CACTTTATTCAATGTCCATAGCTCCTT 59.716 37.037 0.00 0.00 0.00 3.36
3243 3372 6.769822 CACTTTATTCAATGTCCATAGCTCCT 59.230 38.462 0.00 0.00 0.00 3.69
3244 3373 6.016777 CCACTTTATTCAATGTCCATAGCTCC 60.017 42.308 0.00 0.00 0.00 4.70
3245 3374 6.514048 GCCACTTTATTCAATGTCCATAGCTC 60.514 42.308 0.00 0.00 0.00 4.09
3246 3375 5.300286 GCCACTTTATTCAATGTCCATAGCT 59.700 40.000 0.00 0.00 0.00 3.32
3247 3376 5.067674 TGCCACTTTATTCAATGTCCATAGC 59.932 40.000 0.00 0.00 0.00 2.97
3248 3377 6.698008 TGCCACTTTATTCAATGTCCATAG 57.302 37.500 0.00 0.00 0.00 2.23
3249 3378 6.663093 AGTTGCCACTTTATTCAATGTCCATA 59.337 34.615 0.00 0.00 0.00 2.74
3250 3379 5.481473 AGTTGCCACTTTATTCAATGTCCAT 59.519 36.000 0.00 0.00 0.00 3.41
3251 3380 4.832266 AGTTGCCACTTTATTCAATGTCCA 59.168 37.500 0.00 0.00 0.00 4.02
3252 3381 5.391312 AGTTGCCACTTTATTCAATGTCC 57.609 39.130 0.00 0.00 0.00 4.02
3253 3382 8.986477 AAATAGTTGCCACTTTATTCAATGTC 57.014 30.769 0.00 0.00 34.06 3.06
3254 3383 8.806146 AGAAATAGTTGCCACTTTATTCAATGT 58.194 29.630 0.00 0.00 34.06 2.71
3255 3384 9.643693 AAGAAATAGTTGCCACTTTATTCAATG 57.356 29.630 0.00 0.00 34.06 2.82
3256 3385 9.860898 GAAGAAATAGTTGCCACTTTATTCAAT 57.139 29.630 0.00 0.00 34.06 2.57
3257 3386 9.077885 AGAAGAAATAGTTGCCACTTTATTCAA 57.922 29.630 10.56 0.00 34.06 2.69
3258 3387 8.635765 AGAAGAAATAGTTGCCACTTTATTCA 57.364 30.769 10.56 0.00 34.06 2.57
3259 3388 8.730680 TGAGAAGAAATAGTTGCCACTTTATTC 58.269 33.333 0.00 0.00 34.06 1.75
3260 3389 8.635765 TGAGAAGAAATAGTTGCCACTTTATT 57.364 30.769 0.00 0.00 34.06 1.40
3261 3390 8.635765 TTGAGAAGAAATAGTTGCCACTTTAT 57.364 30.769 0.00 0.00 34.06 1.40
3262 3391 8.458573 TTTGAGAAGAAATAGTTGCCACTTTA 57.541 30.769 0.00 0.00 34.06 1.85
3263 3392 6.959639 TTGAGAAGAAATAGTTGCCACTTT 57.040 33.333 0.00 0.00 34.06 2.66
3264 3393 6.959639 TTTGAGAAGAAATAGTTGCCACTT 57.040 33.333 0.00 0.00 34.06 3.16
3265 3394 6.959639 TTTTGAGAAGAAATAGTTGCCACT 57.040 33.333 0.00 0.00 36.99 4.00
3266 3395 9.691362 TTTATTTTGAGAAGAAATAGTTGCCAC 57.309 29.630 0.00 0.00 32.37 5.01
3294 3423 9.841295 TTCCTTCACTTTAGTGTACACTTATTT 57.159 29.630 32.15 11.70 45.76 1.40
3295 3424 9.841295 TTTCCTTCACTTTAGTGTACACTTATT 57.159 29.630 32.15 12.08 45.76 1.40
3304 3433 7.988028 GCCTCTATATTTCCTTCACTTTAGTGT 59.012 37.037 9.53 0.00 45.76 3.55
3305 3434 7.987458 TGCCTCTATATTTCCTTCACTTTAGTG 59.013 37.037 3.47 3.47 46.91 2.74
3306 3435 8.090788 TGCCTCTATATTTCCTTCACTTTAGT 57.909 34.615 0.00 0.00 0.00 2.24
3307 3436 8.964476 TTGCCTCTATATTTCCTTCACTTTAG 57.036 34.615 0.00 0.00 0.00 1.85
3420 3555 4.745125 ACTCTGTTTGTCTGTGTATTCACG 59.255 41.667 0.00 0.00 46.49 4.35
3430 3566 2.918712 AGGGACACTCTGTTTGTCTG 57.081 50.000 9.96 0.00 42.63 3.51
3557 3695 1.673767 ATGGATGGGTCTTGTCCACT 58.326 50.000 0.00 0.00 44.21 4.00
3558 3696 2.514458 AATGGATGGGTCTTGTCCAC 57.486 50.000 0.00 0.00 44.21 4.02
3584 3722 8.718102 AGCAATAAACTAAACGATCATAGTGT 57.282 30.769 0.00 2.21 32.84 3.55
3704 3843 9.537192 CATCTTTATAATCACCCAGTTACGTTA 57.463 33.333 0.00 0.00 0.00 3.18
3782 3921 4.294416 CGATACACGGAGAGACAAATCT 57.706 45.455 0.00 0.00 36.69 2.40
3834 3973 4.260948 GCTTGCAAGGCTTATAGTGATGAC 60.261 45.833 27.10 1.38 0.00 3.06
3878 4017 2.761559 TCCGTAATGCATTATCCCGTG 58.238 47.619 21.52 13.64 0.00 4.94
3886 4025 5.172934 TCTTTACTCGTTCCGTAATGCATT 58.827 37.500 17.56 17.56 0.00 3.56
3967 4106 7.458397 TCCCTTTGTCATCAGTATGTTACTTT 58.542 34.615 0.00 0.00 36.76 2.66
3979 4118 3.593442 ACCTTGTTCCCTTTGTCATCA 57.407 42.857 0.00 0.00 0.00 3.07
3997 4136 5.387279 CGACAAACCACATAACAACATACC 58.613 41.667 0.00 0.00 0.00 2.73
4011 4151 1.890041 CCAGAACGCCGACAAACCA 60.890 57.895 0.00 0.00 0.00 3.67
4023 4164 1.306633 GGACCCCCATTCCCAGAAC 59.693 63.158 0.00 0.00 0.00 3.01
4043 4184 3.429141 CGCAGGCAGGCAAGTCTG 61.429 66.667 7.14 7.14 43.93 3.51
4077 4218 0.250166 GGTTGTACGTCCTGCTGGTT 60.250 55.000 9.73 0.00 34.23 3.67
4078 4219 1.370064 GGTTGTACGTCCTGCTGGT 59.630 57.895 9.73 0.00 34.23 4.00
4080 4221 0.036388 ATGGGTTGTACGTCCTGCTG 60.036 55.000 0.00 0.00 0.00 4.41
4087 4228 1.695242 TGGTGAAGATGGGTTGTACGT 59.305 47.619 0.00 0.00 0.00 3.57
4092 4234 3.799917 GCTTTGTTGGTGAAGATGGGTTG 60.800 47.826 0.00 0.00 0.00 3.77
4093 4235 2.365293 GCTTTGTTGGTGAAGATGGGTT 59.635 45.455 0.00 0.00 0.00 4.11
4094 4236 1.963515 GCTTTGTTGGTGAAGATGGGT 59.036 47.619 0.00 0.00 0.00 4.51
4105 4247 1.007387 GTCTTGGGCGCTTTGTTGG 60.007 57.895 7.64 0.00 0.00 3.77
4107 4249 2.200337 GGGTCTTGGGCGCTTTGTT 61.200 57.895 7.64 0.00 0.00 2.83
4116 4258 4.148825 CCTCGCGAGGGTCTTGGG 62.149 72.222 41.47 19.14 44.87 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.