Multiple sequence alignment - TraesCS1A01G067700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G067700 chr1A 100.000 3014 0 0 1 3014 49354113 49357126 0.000000e+00 5566
1 TraesCS1A01G067700 chr1A 87.292 2463 282 16 560 3014 49346653 49349092 0.000000e+00 2785
2 TraesCS1A01G067700 chr1A 86.149 2397 307 13 627 3014 49293340 49295720 0.000000e+00 2564
3 TraesCS1A01G067700 chr1D 95.263 2470 84 7 555 3014 50108471 50110917 0.000000e+00 3882
4 TraesCS1A01G067700 chr1D 86.276 2390 311 9 627 3014 49956225 49958599 0.000000e+00 2580
5 TraesCS1A01G067700 chr1D 86.681 2335 285 18 692 3014 50022600 50024920 0.000000e+00 2566
6 TraesCS1A01G067700 chr1D 86.125 2328 305 14 692 3014 49973246 49975560 0.000000e+00 2494
7 TraesCS1A01G067700 chr1D 82.864 2451 373 34 588 3012 49616924 49619353 0.000000e+00 2156
8 TraesCS1A01G067700 chr1D 90.603 713 48 6 561 1257 50007326 50008035 0.000000e+00 928
9 TraesCS1A01G067700 chr1B 85.396 2472 324 27 557 3014 70333667 70336115 0.000000e+00 2531
10 TraesCS1A01G067700 chr1B 83.082 2453 376 27 588 3014 70169677 70172116 0.000000e+00 2194
11 TraesCS1A01G067700 chr1B 93.539 356 18 4 162 516 588322762 588322411 2.660000e-145 525
12 TraesCS1A01G067700 chr1B 97.394 307 7 1 211 516 12757149 12756843 3.440000e-144 521
13 TraesCS1A01G067700 chr3B 94.940 336 15 2 191 524 8463049 8462714 2.660000e-145 525
14 TraesCS1A01G067700 chr3B 97.377 305 8 0 211 515 536901299 536900995 1.240000e-143 520
15 TraesCS1A01G067700 chr7A 97.394 307 8 0 211 517 4785067 4784761 9.570000e-145 523
16 TraesCS1A01G067700 chr7A 95.137 329 12 4 190 515 711584212 711583885 1.600000e-142 516
17 TraesCS1A01G067700 chr5A 97.377 305 8 0 211 515 139481494 139481190 1.240000e-143 520
18 TraesCS1A01G067700 chr2B 96.785 311 10 0 208 518 77779289 77779599 1.240000e-143 520
19 TraesCS1A01G067700 chr5B 96.474 312 11 0 211 522 674376774 674376463 1.600000e-142 516


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G067700 chr1A 49354113 49357126 3013 False 5566 5566 100.000 1 3014 1 chr1A.!!$F3 3013
1 TraesCS1A01G067700 chr1A 49346653 49349092 2439 False 2785 2785 87.292 560 3014 1 chr1A.!!$F2 2454
2 TraesCS1A01G067700 chr1A 49293340 49295720 2380 False 2564 2564 86.149 627 3014 1 chr1A.!!$F1 2387
3 TraesCS1A01G067700 chr1D 50108471 50110917 2446 False 3882 3882 95.263 555 3014 1 chr1D.!!$F6 2459
4 TraesCS1A01G067700 chr1D 49956225 49958599 2374 False 2580 2580 86.276 627 3014 1 chr1D.!!$F2 2387
5 TraesCS1A01G067700 chr1D 50022600 50024920 2320 False 2566 2566 86.681 692 3014 1 chr1D.!!$F5 2322
6 TraesCS1A01G067700 chr1D 49973246 49975560 2314 False 2494 2494 86.125 692 3014 1 chr1D.!!$F3 2322
7 TraesCS1A01G067700 chr1D 49616924 49619353 2429 False 2156 2156 82.864 588 3012 1 chr1D.!!$F1 2424
8 TraesCS1A01G067700 chr1D 50007326 50008035 709 False 928 928 90.603 561 1257 1 chr1D.!!$F4 696
9 TraesCS1A01G067700 chr1B 70333667 70336115 2448 False 2531 2531 85.396 557 3014 1 chr1B.!!$F2 2457
10 TraesCS1A01G067700 chr1B 70169677 70172116 2439 False 2194 2194 83.082 588 3014 1 chr1B.!!$F1 2426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.0 31.08 2.90 F
434 435 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.0 0.00 0.0 0.00 3.53 F
455 456 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.0 0.00 0.0 37.81 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1348 1425 0.764890 ACCGTGCTATATGCCACCAT 59.235 50.000 3.03 0.0 42.0 3.55 R
1420 1497 1.269413 CCCTTGCCGCATCATTTCATC 60.269 52.381 0.00 0.0 0.0 2.92 R
2176 2253 3.067106 CAGTGTTTGGACGAGCAATACT 58.933 45.455 0.00 0.0 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.633500 TTTTTGTAACCTGAGATCCTGTTG 57.367 37.500 0.00 0.00 0.00 3.33
24 25 4.974645 TTGTAACCTGAGATCCTGTTGT 57.025 40.909 0.00 0.00 0.00 3.32
25 26 6.428083 TTTGTAACCTGAGATCCTGTTGTA 57.572 37.500 0.00 0.00 0.00 2.41
26 27 5.401531 TGTAACCTGAGATCCTGTTGTAC 57.598 43.478 0.00 0.00 0.00 2.90
27 28 3.983044 AACCTGAGATCCTGTTGTACC 57.017 47.619 0.00 0.00 0.00 3.34
28 29 1.825474 ACCTGAGATCCTGTTGTACCG 59.175 52.381 0.00 0.00 0.00 4.02
29 30 2.100197 CCTGAGATCCTGTTGTACCGA 58.900 52.381 0.00 0.00 0.00 4.69
30 31 2.695666 CCTGAGATCCTGTTGTACCGAT 59.304 50.000 0.00 0.00 0.00 4.18
31 32 3.491619 CCTGAGATCCTGTTGTACCGATG 60.492 52.174 0.00 0.00 0.00 3.84
32 33 2.159099 TGAGATCCTGTTGTACCGATGC 60.159 50.000 0.00 0.00 0.00 3.91
33 34 1.139058 AGATCCTGTTGTACCGATGCC 59.861 52.381 0.00 0.00 0.00 4.40
34 35 0.179084 ATCCTGTTGTACCGATGCCG 60.179 55.000 0.00 0.00 0.00 5.69
35 36 1.216977 CCTGTTGTACCGATGCCGA 59.783 57.895 0.00 0.00 38.22 5.54
36 37 1.082117 CCTGTTGTACCGATGCCGAC 61.082 60.000 0.00 0.00 38.22 4.79
37 38 0.389296 CTGTTGTACCGATGCCGACA 60.389 55.000 0.00 0.00 38.22 4.35
38 39 0.033642 TGTTGTACCGATGCCGACAA 59.966 50.000 0.00 0.00 38.22 3.18
39 40 0.441145 GTTGTACCGATGCCGACAAC 59.559 55.000 0.00 0.00 42.23 3.32
40 41 0.671163 TTGTACCGATGCCGACAACC 60.671 55.000 0.00 0.00 38.22 3.77
41 42 1.217244 GTACCGATGCCGACAACCT 59.783 57.895 0.00 0.00 38.22 3.50
42 43 0.804933 GTACCGATGCCGACAACCTC 60.805 60.000 0.00 0.00 38.22 3.85
43 44 1.952102 TACCGATGCCGACAACCTCC 61.952 60.000 0.00 0.00 38.22 4.30
44 45 2.511600 CGATGCCGACAACCTCCC 60.512 66.667 0.00 0.00 38.22 4.30
45 46 2.124695 GATGCCGACAACCTCCCC 60.125 66.667 0.00 0.00 0.00 4.81
46 47 3.699134 GATGCCGACAACCTCCCCC 62.699 68.421 0.00 0.00 0.00 5.40
47 48 4.974438 TGCCGACAACCTCCCCCT 62.974 66.667 0.00 0.00 0.00 4.79
48 49 3.647771 GCCGACAACCTCCCCCTT 61.648 66.667 0.00 0.00 0.00 3.95
49 50 2.669240 CCGACAACCTCCCCCTTC 59.331 66.667 0.00 0.00 0.00 3.46
50 51 1.918800 CCGACAACCTCCCCCTTCT 60.919 63.158 0.00 0.00 0.00 2.85
51 52 1.296715 CGACAACCTCCCCCTTCTG 59.703 63.158 0.00 0.00 0.00 3.02
52 53 1.002011 GACAACCTCCCCCTTCTGC 60.002 63.158 0.00 0.00 0.00 4.26
53 54 1.464198 ACAACCTCCCCCTTCTGCT 60.464 57.895 0.00 0.00 0.00 4.24
54 55 1.301293 CAACCTCCCCCTTCTGCTC 59.699 63.158 0.00 0.00 0.00 4.26
55 56 1.925972 AACCTCCCCCTTCTGCTCC 60.926 63.158 0.00 0.00 0.00 4.70
56 57 3.093172 CCTCCCCCTTCTGCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
57 58 3.474570 CTCCCCCTTCTGCTCCCG 61.475 72.222 0.00 0.00 0.00 5.14
58 59 4.332543 TCCCCCTTCTGCTCCCGT 62.333 66.667 0.00 0.00 0.00 5.28
59 60 3.330720 CCCCCTTCTGCTCCCGTT 61.331 66.667 0.00 0.00 0.00 4.44
60 61 2.757077 CCCCTTCTGCTCCCGTTT 59.243 61.111 0.00 0.00 0.00 3.60
61 62 1.675641 CCCCTTCTGCTCCCGTTTG 60.676 63.158 0.00 0.00 0.00 2.93
62 63 2.335712 CCCTTCTGCTCCCGTTTGC 61.336 63.158 0.00 0.00 0.00 3.68
63 64 1.600636 CCTTCTGCTCCCGTTTGCA 60.601 57.895 0.00 0.00 37.63 4.08
64 65 0.962356 CCTTCTGCTCCCGTTTGCAT 60.962 55.000 0.00 0.00 38.59 3.96
65 66 0.449388 CTTCTGCTCCCGTTTGCATC 59.551 55.000 0.00 0.00 38.59 3.91
66 67 0.960364 TTCTGCTCCCGTTTGCATCC 60.960 55.000 0.00 0.00 38.59 3.51
67 68 1.377725 CTGCTCCCGTTTGCATCCT 60.378 57.895 0.00 0.00 38.59 3.24
68 69 1.372087 CTGCTCCCGTTTGCATCCTC 61.372 60.000 0.00 0.00 38.59 3.71
69 70 1.078143 GCTCCCGTTTGCATCCTCT 60.078 57.895 0.00 0.00 0.00 3.69
70 71 0.678048 GCTCCCGTTTGCATCCTCTT 60.678 55.000 0.00 0.00 0.00 2.85
71 72 1.826385 CTCCCGTTTGCATCCTCTTT 58.174 50.000 0.00 0.00 0.00 2.52
72 73 1.470098 CTCCCGTTTGCATCCTCTTTG 59.530 52.381 0.00 0.00 0.00 2.77
73 74 1.073125 TCCCGTTTGCATCCTCTTTGA 59.927 47.619 0.00 0.00 0.00 2.69
74 75 1.200020 CCCGTTTGCATCCTCTTTGAC 59.800 52.381 0.00 0.00 0.00 3.18
75 76 1.135972 CCGTTTGCATCCTCTTTGACG 60.136 52.381 0.00 0.00 0.00 4.35
76 77 1.531149 CGTTTGCATCCTCTTTGACGT 59.469 47.619 0.00 0.00 0.00 4.34
77 78 2.411547 CGTTTGCATCCTCTTTGACGTC 60.412 50.000 9.11 9.11 0.00 4.34
78 79 1.428448 TTGCATCCTCTTTGACGTCG 58.572 50.000 11.62 0.00 0.00 5.12
79 80 0.389817 TGCATCCTCTTTGACGTCGG 60.390 55.000 11.62 5.55 0.00 4.79
80 81 0.389948 GCATCCTCTTTGACGTCGGT 60.390 55.000 11.62 0.00 0.00 4.69
81 82 1.939838 GCATCCTCTTTGACGTCGGTT 60.940 52.381 11.62 0.00 0.00 4.44
82 83 2.413837 CATCCTCTTTGACGTCGGTTT 58.586 47.619 11.62 0.00 0.00 3.27
83 84 1.860676 TCCTCTTTGACGTCGGTTTG 58.139 50.000 11.62 1.00 0.00 2.93
84 85 1.137479 TCCTCTTTGACGTCGGTTTGT 59.863 47.619 11.62 0.00 0.00 2.83
85 86 1.260561 CCTCTTTGACGTCGGTTTGTG 59.739 52.381 11.62 0.78 0.00 3.33
86 87 1.931172 CTCTTTGACGTCGGTTTGTGT 59.069 47.619 11.62 0.00 0.00 3.72
87 88 3.117794 CTCTTTGACGTCGGTTTGTGTA 58.882 45.455 11.62 0.00 0.00 2.90
88 89 3.719924 TCTTTGACGTCGGTTTGTGTAT 58.280 40.909 11.62 0.00 0.00 2.29
89 90 3.737266 TCTTTGACGTCGGTTTGTGTATC 59.263 43.478 11.62 0.00 0.00 2.24
90 91 2.068837 TGACGTCGGTTTGTGTATCC 57.931 50.000 11.62 0.00 0.00 2.59
91 92 1.340568 TGACGTCGGTTTGTGTATCCA 59.659 47.619 11.62 0.00 0.00 3.41
92 93 2.223994 TGACGTCGGTTTGTGTATCCAA 60.224 45.455 11.62 0.00 0.00 3.53
93 94 2.409975 ACGTCGGTTTGTGTATCCAAG 58.590 47.619 0.00 0.00 0.00 3.61
94 95 1.127951 CGTCGGTTTGTGTATCCAAGC 59.872 52.381 0.00 0.00 0.00 4.01
95 96 1.127951 GTCGGTTTGTGTATCCAAGCG 59.872 52.381 0.00 0.00 35.93 4.68
96 97 1.001068 TCGGTTTGTGTATCCAAGCGA 59.999 47.619 1.60 1.60 40.37 4.93
97 98 1.393539 CGGTTTGTGTATCCAAGCGAG 59.606 52.381 0.00 0.00 36.60 5.03
98 99 2.695359 GGTTTGTGTATCCAAGCGAGA 58.305 47.619 0.00 0.00 0.00 4.04
99 100 3.270877 GGTTTGTGTATCCAAGCGAGAT 58.729 45.455 0.00 0.00 0.00 2.75
100 101 3.063997 GGTTTGTGTATCCAAGCGAGATG 59.936 47.826 0.00 0.00 0.00 2.90
101 102 3.885724 TTGTGTATCCAAGCGAGATGA 57.114 42.857 0.00 0.00 0.00 2.92
102 103 4.406648 TTGTGTATCCAAGCGAGATGAT 57.593 40.909 0.00 0.00 0.00 2.45
103 104 5.529581 TTGTGTATCCAAGCGAGATGATA 57.470 39.130 0.00 0.00 0.00 2.15
104 105 4.871513 TGTGTATCCAAGCGAGATGATAC 58.128 43.478 0.00 0.00 39.83 2.24
105 106 3.914966 GTGTATCCAAGCGAGATGATACG 59.085 47.826 0.00 0.00 41.44 3.06
113 114 2.509052 CGAGATGATACGCTCCCAAA 57.491 50.000 0.00 0.00 0.00 3.28
114 115 2.821546 CGAGATGATACGCTCCCAAAA 58.178 47.619 0.00 0.00 0.00 2.44
115 116 3.194861 CGAGATGATACGCTCCCAAAAA 58.805 45.455 0.00 0.00 0.00 1.94
116 117 3.001330 CGAGATGATACGCTCCCAAAAAC 59.999 47.826 0.00 0.00 0.00 2.43
117 118 4.192317 GAGATGATACGCTCCCAAAAACT 58.808 43.478 0.00 0.00 0.00 2.66
118 119 4.589908 AGATGATACGCTCCCAAAAACTT 58.410 39.130 0.00 0.00 0.00 2.66
119 120 5.010282 AGATGATACGCTCCCAAAAACTTT 58.990 37.500 0.00 0.00 0.00 2.66
120 121 4.759516 TGATACGCTCCCAAAAACTTTC 57.240 40.909 0.00 0.00 0.00 2.62
121 122 4.138290 TGATACGCTCCCAAAAACTTTCA 58.862 39.130 0.00 0.00 0.00 2.69
122 123 4.764823 TGATACGCTCCCAAAAACTTTCAT 59.235 37.500 0.00 0.00 0.00 2.57
123 124 5.941058 TGATACGCTCCCAAAAACTTTCATA 59.059 36.000 0.00 0.00 0.00 2.15
124 125 4.499037 ACGCTCCCAAAAACTTTCATAC 57.501 40.909 0.00 0.00 0.00 2.39
125 126 4.142038 ACGCTCCCAAAAACTTTCATACT 58.858 39.130 0.00 0.00 0.00 2.12
126 127 4.023193 ACGCTCCCAAAAACTTTCATACTG 60.023 41.667 0.00 0.00 0.00 2.74
127 128 4.023193 CGCTCCCAAAAACTTTCATACTGT 60.023 41.667 0.00 0.00 0.00 3.55
128 129 5.180492 CGCTCCCAAAAACTTTCATACTGTA 59.820 40.000 0.00 0.00 0.00 2.74
129 130 6.128007 CGCTCCCAAAAACTTTCATACTGTAT 60.128 38.462 0.00 0.00 0.00 2.29
130 131 7.029563 GCTCCCAAAAACTTTCATACTGTATG 58.970 38.462 19.37 19.37 37.52 2.39
131 132 6.919721 TCCCAAAAACTTTCATACTGTATGC 58.080 36.000 20.37 0.00 36.14 3.14
132 133 6.719370 TCCCAAAAACTTTCATACTGTATGCT 59.281 34.615 20.37 2.95 36.14 3.79
133 134 7.885922 TCCCAAAAACTTTCATACTGTATGCTA 59.114 33.333 20.37 9.85 36.14 3.49
134 135 7.968405 CCCAAAAACTTTCATACTGTATGCTAC 59.032 37.037 20.37 0.00 36.14 3.58
135 136 7.692291 CCAAAAACTTTCATACTGTATGCTACG 59.308 37.037 20.37 11.85 36.14 3.51
136 137 5.968387 AACTTTCATACTGTATGCTACGC 57.032 39.130 20.37 0.00 36.14 4.42
137 138 5.263968 ACTTTCATACTGTATGCTACGCT 57.736 39.130 20.37 1.12 36.14 5.07
138 139 5.661458 ACTTTCATACTGTATGCTACGCTT 58.339 37.500 20.37 1.38 36.14 4.68
139 140 5.749109 ACTTTCATACTGTATGCTACGCTTC 59.251 40.000 20.37 0.00 36.14 3.86
140 141 4.238761 TCATACTGTATGCTACGCTTCC 57.761 45.455 20.37 0.00 36.14 3.46
141 142 3.634910 TCATACTGTATGCTACGCTTCCA 59.365 43.478 20.37 0.00 36.14 3.53
142 143 4.098807 TCATACTGTATGCTACGCTTCCAA 59.901 41.667 20.37 0.00 36.14 3.53
143 144 3.328382 ACTGTATGCTACGCTTCCAAA 57.672 42.857 0.00 0.00 0.00 3.28
144 145 3.670625 ACTGTATGCTACGCTTCCAAAA 58.329 40.909 0.00 0.00 0.00 2.44
145 146 4.069304 ACTGTATGCTACGCTTCCAAAAA 58.931 39.130 0.00 0.00 0.00 1.94
146 147 4.083484 ACTGTATGCTACGCTTCCAAAAAC 60.083 41.667 0.00 0.00 0.00 2.43
147 148 4.069304 TGTATGCTACGCTTCCAAAAACT 58.931 39.130 0.00 0.00 0.00 2.66
148 149 4.517453 TGTATGCTACGCTTCCAAAAACTT 59.483 37.500 0.00 0.00 0.00 2.66
149 150 4.584327 ATGCTACGCTTCCAAAAACTTT 57.416 36.364 0.00 0.00 0.00 2.66
150 151 3.959943 TGCTACGCTTCCAAAAACTTTC 58.040 40.909 0.00 0.00 0.00 2.62
151 152 3.378742 TGCTACGCTTCCAAAAACTTTCA 59.621 39.130 0.00 0.00 0.00 2.69
152 153 4.037446 TGCTACGCTTCCAAAAACTTTCAT 59.963 37.500 0.00 0.00 0.00 2.57
153 154 5.239744 TGCTACGCTTCCAAAAACTTTCATA 59.760 36.000 0.00 0.00 0.00 2.15
154 155 5.567915 GCTACGCTTCCAAAAACTTTCATAC 59.432 40.000 0.00 0.00 0.00 2.39
155 156 5.767816 ACGCTTCCAAAAACTTTCATACT 57.232 34.783 0.00 0.00 0.00 2.12
156 157 5.519722 ACGCTTCCAAAAACTTTCATACTG 58.480 37.500 0.00 0.00 0.00 2.74
157 158 5.067283 ACGCTTCCAAAAACTTTCATACTGT 59.933 36.000 0.00 0.00 0.00 3.55
158 159 6.261381 ACGCTTCCAAAAACTTTCATACTGTA 59.739 34.615 0.00 0.00 0.00 2.74
159 160 7.040686 ACGCTTCCAAAAACTTTCATACTGTAT 60.041 33.333 0.00 0.00 0.00 2.29
160 161 7.271223 CGCTTCCAAAAACTTTCATACTGTATG 59.729 37.037 19.37 19.37 37.52 2.39
161 162 8.296713 GCTTCCAAAAACTTTCATACTGTATGA 58.703 33.333 23.01 23.01 43.06 2.15
189 190 8.725405 TCATTAATAAGCAGTAAAATCGACCA 57.275 30.769 0.00 0.00 0.00 4.02
190 191 9.168451 TCATTAATAAGCAGTAAAATCGACCAA 57.832 29.630 0.00 0.00 0.00 3.67
191 192 9.781834 CATTAATAAGCAGTAAAATCGACCAAA 57.218 29.630 0.00 0.00 0.00 3.28
192 193 9.783256 ATTAATAAGCAGTAAAATCGACCAAAC 57.217 29.630 0.00 0.00 0.00 2.93
193 194 6.811253 ATAAGCAGTAAAATCGACCAAACA 57.189 33.333 0.00 0.00 0.00 2.83
194 195 5.508200 AAGCAGTAAAATCGACCAAACAA 57.492 34.783 0.00 0.00 0.00 2.83
195 196 5.508200 AGCAGTAAAATCGACCAAACAAA 57.492 34.783 0.00 0.00 0.00 2.83
196 197 5.897050 AGCAGTAAAATCGACCAAACAAAA 58.103 33.333 0.00 0.00 0.00 2.44
197 198 6.334202 AGCAGTAAAATCGACCAAACAAAAA 58.666 32.000 0.00 0.00 0.00 1.94
220 221 8.561738 AAAAGATGTACATAACGAATCAACCT 57.438 30.769 8.71 0.00 0.00 3.50
221 222 7.539712 AAGATGTACATAACGAATCAACCTG 57.460 36.000 8.71 0.00 0.00 4.00
222 223 6.640518 AGATGTACATAACGAATCAACCTGT 58.359 36.000 8.71 0.00 0.00 4.00
223 224 6.535150 AGATGTACATAACGAATCAACCTGTG 59.465 38.462 8.71 0.00 0.00 3.66
224 225 4.932799 TGTACATAACGAATCAACCTGTGG 59.067 41.667 0.00 0.00 0.00 4.17
225 226 4.015872 ACATAACGAATCAACCTGTGGT 57.984 40.909 0.00 0.00 37.65 4.16
235 236 2.525105 AACCTGTGGTTGAGTTGGTT 57.475 45.000 0.71 0.00 45.07 3.67
236 237 3.655615 AACCTGTGGTTGAGTTGGTTA 57.344 42.857 0.71 0.00 45.07 2.85
237 238 3.208747 ACCTGTGGTTGAGTTGGTTAG 57.791 47.619 0.00 0.00 27.29 2.34
238 239 2.158667 ACCTGTGGTTGAGTTGGTTAGG 60.159 50.000 0.00 0.00 27.29 2.69
239 240 2.158667 CCTGTGGTTGAGTTGGTTAGGT 60.159 50.000 0.00 0.00 0.00 3.08
240 241 2.878406 CTGTGGTTGAGTTGGTTAGGTG 59.122 50.000 0.00 0.00 0.00 4.00
241 242 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
242 243 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
243 244 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
244 245 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
245 246 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
246 247 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
247 248 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
248 249 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
249 250 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
250 251 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
251 252 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
252 253 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
253 254 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
254 255 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
255 256 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
256 257 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
263 264 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
264 265 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
265 266 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
266 267 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
284 285 3.087370 AGGGTTTAAATCCTGGTGCTC 57.913 47.619 19.53 0.00 38.36 4.26
285 286 1.743394 GGGTTTAAATCCTGGTGCTCG 59.257 52.381 10.45 0.00 0.00 5.03
286 287 1.132453 GGTTTAAATCCTGGTGCTCGC 59.868 52.381 0.00 0.00 0.00 5.03
287 288 1.810151 GTTTAAATCCTGGTGCTCGCA 59.190 47.619 0.00 0.00 0.00 5.10
288 289 2.418368 TTAAATCCTGGTGCTCGCAT 57.582 45.000 0.00 0.00 0.00 4.73
289 290 2.418368 TAAATCCTGGTGCTCGCATT 57.582 45.000 0.00 0.00 0.00 3.56
290 291 2.418368 AAATCCTGGTGCTCGCATTA 57.582 45.000 0.00 0.00 0.00 1.90
291 292 2.645838 AATCCTGGTGCTCGCATTAT 57.354 45.000 0.00 0.00 0.00 1.28
292 293 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
293 294 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
294 295 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
295 296 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
296 297 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
297 298 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
298 299 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
299 300 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
300 301 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
301 302 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
302 303 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
303 304 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
304 305 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
305 306 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
306 307 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
307 308 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
308 309 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
309 310 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
317 318 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
318 319 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
319 320 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
320 321 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
321 322 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
322 323 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
323 324 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
324 325 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
335 336 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
336 337 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
337 338 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
338 339 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
339 340 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
340 341 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
341 342 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
342 343 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
343 344 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
344 345 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
345 346 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
346 347 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
369 370 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
372 373 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
374 375 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
377 378 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
378 379 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
379 380 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
380 381 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
381 382 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
382 383 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
383 384 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
384 385 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
385 386 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
386 387 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
387 388 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
388 389 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
389 390 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
390 391 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
391 392 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
392 393 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
393 394 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
394 395 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
395 396 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
396 397 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
397 398 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
398 399 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
399 400 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
400 401 6.758254 TCGTAAATCTCAAGATGATATGCCA 58.242 36.000 0.00 0.00 34.49 4.92
401 402 6.870439 TCGTAAATCTCAAGATGATATGCCAG 59.130 38.462 0.00 0.00 34.49 4.85
402 403 5.961396 AAATCTCAAGATGATATGCCAGC 57.039 39.130 0.00 0.00 34.49 4.85
403 404 4.912317 ATCTCAAGATGATATGCCAGCT 57.088 40.909 0.00 0.00 33.74 4.24
404 405 4.268797 TCTCAAGATGATATGCCAGCTC 57.731 45.455 0.00 0.00 30.67 4.09
405 406 3.644738 TCTCAAGATGATATGCCAGCTCA 59.355 43.478 0.00 0.00 30.67 4.26
406 407 3.997681 CTCAAGATGATATGCCAGCTCAG 59.002 47.826 0.00 0.00 30.67 3.35
407 408 3.390311 TCAAGATGATATGCCAGCTCAGT 59.610 43.478 0.00 0.00 30.67 3.41
408 409 3.681593 AGATGATATGCCAGCTCAGTC 57.318 47.619 0.00 0.00 0.00 3.51
409 410 3.241156 AGATGATATGCCAGCTCAGTCT 58.759 45.455 0.00 0.00 0.00 3.24
410 411 3.258872 AGATGATATGCCAGCTCAGTCTC 59.741 47.826 0.00 0.00 0.00 3.36
411 412 2.675583 TGATATGCCAGCTCAGTCTCT 58.324 47.619 0.00 0.00 0.00 3.10
412 413 2.627221 TGATATGCCAGCTCAGTCTCTC 59.373 50.000 0.00 0.00 0.00 3.20
413 414 1.028130 TATGCCAGCTCAGTCTCTCG 58.972 55.000 0.00 0.00 0.00 4.04
414 415 1.674764 ATGCCAGCTCAGTCTCTCGG 61.675 60.000 0.00 0.00 0.00 4.63
415 416 2.049185 GCCAGCTCAGTCTCTCGGA 61.049 63.158 0.00 0.00 0.00 4.55
416 417 2.003658 GCCAGCTCAGTCTCTCGGAG 62.004 65.000 0.00 0.00 40.44 4.63
417 418 1.383456 CCAGCTCAGTCTCTCGGAGG 61.383 65.000 4.96 0.00 38.48 4.30
418 419 0.679640 CAGCTCAGTCTCTCGGAGGT 60.680 60.000 4.96 0.00 46.44 3.85
419 420 0.679640 AGCTCAGTCTCTCGGAGGTG 60.680 60.000 4.96 0.00 44.55 4.00
420 421 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
421 422 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
422 423 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
423 424 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
424 425 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
425 426 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
426 427 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
427 428 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
428 429 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
429 430 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
430 431 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
431 432 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
432 433 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
433 434 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
434 435 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
435 436 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
436 437 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
437 438 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
438 439 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
439 440 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
440 441 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
441 442 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
442 443 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
443 444 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
444 445 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
445 446 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
446 447 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
447 448 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
450 451 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
451 452 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
452 453 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
453 454 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
454 455 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
455 456 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
456 457 0.319125 TGCGTGTGTGCGTTCATAGA 60.319 50.000 0.00 0.00 37.81 1.98
457 458 0.366871 GCGTGTGTGCGTTCATAGAG 59.633 55.000 0.00 0.00 0.00 2.43
458 459 1.977188 CGTGTGTGCGTTCATAGAGA 58.023 50.000 0.00 0.00 0.00 3.10
459 460 2.530177 CGTGTGTGCGTTCATAGAGAT 58.470 47.619 0.00 0.00 0.00 2.75
460 461 2.279921 CGTGTGTGCGTTCATAGAGATG 59.720 50.000 0.00 0.00 0.00 2.90
461 462 3.511699 GTGTGTGCGTTCATAGAGATGA 58.488 45.455 0.00 0.00 40.45 2.92
462 463 3.549471 GTGTGTGCGTTCATAGAGATGAG 59.451 47.826 0.00 0.00 43.03 2.90
463 464 3.193479 TGTGTGCGTTCATAGAGATGAGT 59.807 43.478 0.00 0.00 43.03 3.41
464 465 3.549471 GTGTGCGTTCATAGAGATGAGTG 59.451 47.826 0.00 0.00 43.03 3.51
465 466 3.193479 TGTGCGTTCATAGAGATGAGTGT 59.807 43.478 0.00 0.00 43.03 3.55
466 467 4.398044 TGTGCGTTCATAGAGATGAGTGTA 59.602 41.667 0.00 0.00 43.03 2.90
467 468 5.067805 TGTGCGTTCATAGAGATGAGTGTAT 59.932 40.000 0.00 0.00 43.03 2.29
468 469 5.400782 GTGCGTTCATAGAGATGAGTGTATG 59.599 44.000 0.00 0.00 43.03 2.39
469 470 5.067805 TGCGTTCATAGAGATGAGTGTATGT 59.932 40.000 0.00 0.00 43.03 2.29
470 471 5.400782 GCGTTCATAGAGATGAGTGTATGTG 59.599 44.000 0.00 0.00 43.03 3.21
471 472 5.400782 CGTTCATAGAGATGAGTGTATGTGC 59.599 44.000 0.00 0.00 43.03 4.57
472 473 5.113502 TCATAGAGATGAGTGTATGTGCG 57.886 43.478 0.00 0.00 37.15 5.34
473 474 4.580580 TCATAGAGATGAGTGTATGTGCGT 59.419 41.667 0.00 0.00 37.15 5.24
474 475 3.156511 AGAGATGAGTGTATGTGCGTG 57.843 47.619 0.00 0.00 0.00 5.34
475 476 2.493675 AGAGATGAGTGTATGTGCGTGT 59.506 45.455 0.00 0.00 0.00 4.49
476 477 3.694566 AGAGATGAGTGTATGTGCGTGTA 59.305 43.478 0.00 0.00 0.00 2.90
477 478 4.339530 AGAGATGAGTGTATGTGCGTGTAT 59.660 41.667 0.00 0.00 0.00 2.29
478 479 5.531287 AGAGATGAGTGTATGTGCGTGTATA 59.469 40.000 0.00 0.00 0.00 1.47
479 480 6.207614 AGAGATGAGTGTATGTGCGTGTATAT 59.792 38.462 0.00 0.00 0.00 0.86
480 481 6.152379 AGATGAGTGTATGTGCGTGTATATG 58.848 40.000 0.00 0.00 0.00 1.78
481 482 5.508200 TGAGTGTATGTGCGTGTATATGA 57.492 39.130 0.00 0.00 0.00 2.15
482 483 5.519722 TGAGTGTATGTGCGTGTATATGAG 58.480 41.667 0.00 0.00 0.00 2.90
483 484 4.299155 AGTGTATGTGCGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
484 485 3.119628 GTGTATGTGCGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
489 490 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
490 491 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
491 492 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
492 493 2.603110 CGTGTATATGAGCGCTTGTGTT 59.397 45.455 13.26 0.00 0.00 3.32
493 494 3.062099 CGTGTATATGAGCGCTTGTGTTT 59.938 43.478 13.26 0.00 0.00 2.83
494 495 4.334443 GTGTATATGAGCGCTTGTGTTTG 58.666 43.478 13.26 0.00 0.00 2.93
495 496 4.000325 TGTATATGAGCGCTTGTGTTTGT 59.000 39.130 13.26 0.00 0.00 2.83
496 497 5.062934 GTGTATATGAGCGCTTGTGTTTGTA 59.937 40.000 13.26 0.00 0.00 2.41
497 498 2.969443 ATGAGCGCTTGTGTTTGTAC 57.031 45.000 13.26 0.00 0.00 2.90
498 499 1.948104 TGAGCGCTTGTGTTTGTACT 58.052 45.000 13.26 0.00 0.00 2.73
499 500 1.597195 TGAGCGCTTGTGTTTGTACTG 59.403 47.619 13.26 0.00 0.00 2.74
500 501 1.864711 GAGCGCTTGTGTTTGTACTGA 59.135 47.619 13.26 0.00 0.00 3.41
501 502 2.480419 GAGCGCTTGTGTTTGTACTGAT 59.520 45.455 13.26 0.00 0.00 2.90
502 503 2.224079 AGCGCTTGTGTTTGTACTGATG 59.776 45.455 2.64 0.00 0.00 3.07
503 504 2.574322 CGCTTGTGTTTGTACTGATGC 58.426 47.619 0.00 0.00 0.00 3.91
504 505 2.224079 CGCTTGTGTTTGTACTGATGCT 59.776 45.455 0.00 0.00 0.00 3.79
505 506 3.431912 CGCTTGTGTTTGTACTGATGCTA 59.568 43.478 0.00 0.00 0.00 3.49
506 507 4.084066 CGCTTGTGTTTGTACTGATGCTAA 60.084 41.667 0.00 0.00 0.00 3.09
507 508 5.559991 CGCTTGTGTTTGTACTGATGCTAAA 60.560 40.000 0.00 0.00 0.00 1.85
508 509 6.205784 GCTTGTGTTTGTACTGATGCTAAAA 58.794 36.000 0.00 0.00 0.00 1.52
509 510 6.695278 GCTTGTGTTTGTACTGATGCTAAAAA 59.305 34.615 0.00 0.00 0.00 1.94
535 536 5.576337 AAAGATGTACATATACTTGCGCG 57.424 39.130 8.71 0.00 32.00 6.86
536 537 2.987149 AGATGTACATATACTTGCGCGC 59.013 45.455 27.26 27.26 32.00 6.86
537 538 1.493772 TGTACATATACTTGCGCGCC 58.506 50.000 30.77 11.42 32.00 6.53
538 539 1.067974 TGTACATATACTTGCGCGCCT 59.932 47.619 30.77 13.63 32.00 5.52
539 540 1.719780 GTACATATACTTGCGCGCCTC 59.280 52.381 30.77 0.92 0.00 4.70
540 541 0.600255 ACATATACTTGCGCGCCTCC 60.600 55.000 30.77 0.47 0.00 4.30
541 542 1.004918 ATATACTTGCGCGCCTCCC 60.005 57.895 30.77 0.00 0.00 4.30
542 543 2.765250 ATATACTTGCGCGCCTCCCG 62.765 60.000 30.77 14.25 40.75 5.14
564 565 4.451150 GAGTGTCCCGCATCCGCA 62.451 66.667 0.00 0.00 38.40 5.69
598 608 1.156322 TCACCCTCCTCCTCCTCCTT 61.156 60.000 0.00 0.00 0.00 3.36
1063 1131 1.709147 GAACTGCTGCTGCCGTATGG 61.709 60.000 12.73 0.00 35.61 2.74
1310 1384 2.407428 CGCTCGACCTACTGCTCCA 61.407 63.158 0.00 0.00 0.00 3.86
1318 1392 1.680522 CCTACTGCTCCAGATGGCGT 61.681 60.000 0.00 0.00 35.18 5.68
1319 1393 0.249238 CTACTGCTCCAGATGGCGTC 60.249 60.000 0.00 0.00 35.18 5.19
1320 1394 2.004808 TACTGCTCCAGATGGCGTCG 62.005 60.000 0.13 0.00 35.18 5.12
1323 1397 1.880340 GCTCCAGATGGCGTCGAAG 60.880 63.158 0.00 0.00 34.44 3.79
1334 1411 1.446272 CGTCGAAGGAAGGAGGTGC 60.446 63.158 0.00 0.00 0.00 5.01
1420 1497 3.562973 AGACAAGGCATGCAATCTATTCG 59.437 43.478 21.36 0.00 0.00 3.34
1504 1581 0.316204 GTGCAAAGCTGGAGCAATGT 59.684 50.000 9.25 0.00 45.16 2.71
1612 1689 1.830847 ACTTTGGGCCGGTGGAAAC 60.831 57.895 1.90 0.00 0.00 2.78
1748 1825 4.039609 AGAAGTTTTCTTTTCCATGGCTGG 59.960 41.667 6.96 0.00 41.17 4.85
1757 1834 2.056223 CCATGGCTGGAAAGGGCAG 61.056 63.158 0.00 0.00 46.37 4.85
2013 2090 8.969260 ATTCAACTCTAATATCTGCACATTGA 57.031 30.769 0.00 0.00 0.00 2.57
2037 2114 0.253044 TGGGTAAGCTGACTGATGCC 59.747 55.000 0.00 0.00 0.00 4.40
2205 2282 1.670811 CGTCCAAACACTGCACTCTTT 59.329 47.619 0.00 0.00 0.00 2.52
2528 2608 7.389607 ACCTACAACTGTTACATATGAAACCAC 59.610 37.037 10.38 0.00 0.00 4.16
2577 2657 3.754188 ACTGCTGATGCGAAGAAAATC 57.246 42.857 0.00 0.00 43.34 2.17
2609 2689 5.471456 AGATGATCGAAAGTGGAATAATGGC 59.529 40.000 0.00 0.00 0.00 4.40
2804 2884 4.039004 TGATTTGTTTGCTGCATTACCAGT 59.961 37.500 1.84 0.00 35.28 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.126409 ACAACAGGATCTCAGGTTACAAAAA 58.874 36.000 0.00 0.00 0.00 1.94
1 2 5.690865 ACAACAGGATCTCAGGTTACAAAA 58.309 37.500 0.00 0.00 0.00 2.44
2 3 5.304686 ACAACAGGATCTCAGGTTACAAA 57.695 39.130 0.00 0.00 0.00 2.83
4 5 4.222145 GGTACAACAGGATCTCAGGTTACA 59.778 45.833 0.00 0.00 0.00 2.41
5 6 4.677250 CGGTACAACAGGATCTCAGGTTAC 60.677 50.000 0.00 0.00 0.00 2.50
6 7 3.446161 CGGTACAACAGGATCTCAGGTTA 59.554 47.826 0.00 0.00 0.00 2.85
7 8 2.233922 CGGTACAACAGGATCTCAGGTT 59.766 50.000 0.00 0.00 0.00 3.50
8 9 1.825474 CGGTACAACAGGATCTCAGGT 59.175 52.381 0.00 0.00 0.00 4.00
9 10 2.100197 TCGGTACAACAGGATCTCAGG 58.900 52.381 0.00 0.00 0.00 3.86
10 11 3.711086 CATCGGTACAACAGGATCTCAG 58.289 50.000 0.00 0.00 0.00 3.35
11 12 2.159099 GCATCGGTACAACAGGATCTCA 60.159 50.000 0.00 0.00 0.00 3.27
12 13 2.474816 GCATCGGTACAACAGGATCTC 58.525 52.381 0.00 0.00 0.00 2.75
13 14 1.139058 GGCATCGGTACAACAGGATCT 59.861 52.381 0.00 0.00 0.00 2.75
14 15 1.583054 GGCATCGGTACAACAGGATC 58.417 55.000 0.00 0.00 0.00 3.36
15 16 0.179084 CGGCATCGGTACAACAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
16 17 1.216977 CGGCATCGGTACAACAGGA 59.783 57.895 0.00 0.00 0.00 3.86
17 18 1.082117 GTCGGCATCGGTACAACAGG 61.082 60.000 0.00 0.00 36.95 4.00
18 19 0.389296 TGTCGGCATCGGTACAACAG 60.389 55.000 0.00 0.00 36.95 3.16
19 20 0.033642 TTGTCGGCATCGGTACAACA 59.966 50.000 0.00 0.00 31.27 3.33
20 21 0.441145 GTTGTCGGCATCGGTACAAC 59.559 55.000 0.00 0.00 39.31 3.32
21 22 0.671163 GGTTGTCGGCATCGGTACAA 60.671 55.000 0.00 0.00 32.96 2.41
22 23 1.079681 GGTTGTCGGCATCGGTACA 60.080 57.895 0.00 0.00 36.95 2.90
23 24 0.804933 GAGGTTGTCGGCATCGGTAC 60.805 60.000 0.00 0.00 36.95 3.34
24 25 1.514087 GAGGTTGTCGGCATCGGTA 59.486 57.895 0.00 0.00 36.95 4.02
25 26 2.264794 GAGGTTGTCGGCATCGGT 59.735 61.111 0.00 0.00 36.95 4.69
26 27 2.511600 GGAGGTTGTCGGCATCGG 60.512 66.667 0.00 0.00 36.95 4.18
27 28 2.511600 GGGAGGTTGTCGGCATCG 60.512 66.667 0.00 0.00 37.82 3.84
28 29 2.124695 GGGGAGGTTGTCGGCATC 60.125 66.667 0.00 0.00 0.00 3.91
29 30 3.728373 GGGGGAGGTTGTCGGCAT 61.728 66.667 0.00 0.00 0.00 4.40
30 31 4.974438 AGGGGGAGGTTGTCGGCA 62.974 66.667 0.00 0.00 0.00 5.69
31 32 3.623703 GAAGGGGGAGGTTGTCGGC 62.624 68.421 0.00 0.00 0.00 5.54
32 33 1.918800 AGAAGGGGGAGGTTGTCGG 60.919 63.158 0.00 0.00 0.00 4.79
33 34 1.296715 CAGAAGGGGGAGGTTGTCG 59.703 63.158 0.00 0.00 0.00 4.35
34 35 1.002011 GCAGAAGGGGGAGGTTGTC 60.002 63.158 0.00 0.00 0.00 3.18
35 36 1.464198 AGCAGAAGGGGGAGGTTGT 60.464 57.895 0.00 0.00 0.00 3.32
36 37 1.301293 GAGCAGAAGGGGGAGGTTG 59.699 63.158 0.00 0.00 0.00 3.77
37 38 1.925972 GGAGCAGAAGGGGGAGGTT 60.926 63.158 0.00 0.00 0.00 3.50
38 39 2.285743 GGAGCAGAAGGGGGAGGT 60.286 66.667 0.00 0.00 0.00 3.85
39 40 3.093172 GGGAGCAGAAGGGGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
40 41 3.474570 CGGGAGCAGAAGGGGGAG 61.475 72.222 0.00 0.00 0.00 4.30
41 42 3.864983 AACGGGAGCAGAAGGGGGA 62.865 63.158 0.00 0.00 0.00 4.81
42 43 2.907179 AAACGGGAGCAGAAGGGGG 61.907 63.158 0.00 0.00 0.00 5.40
43 44 1.675641 CAAACGGGAGCAGAAGGGG 60.676 63.158 0.00 0.00 0.00 4.79
44 45 2.335712 GCAAACGGGAGCAGAAGGG 61.336 63.158 0.00 0.00 0.00 3.95
45 46 0.962356 ATGCAAACGGGAGCAGAAGG 60.962 55.000 0.00 0.00 44.94 3.46
46 47 0.449388 GATGCAAACGGGAGCAGAAG 59.551 55.000 0.00 0.00 44.94 2.85
47 48 0.960364 GGATGCAAACGGGAGCAGAA 60.960 55.000 0.00 0.00 44.94 3.02
48 49 1.377202 GGATGCAAACGGGAGCAGA 60.377 57.895 0.00 0.00 44.94 4.26
49 50 1.372087 GAGGATGCAAACGGGAGCAG 61.372 60.000 0.00 0.00 44.94 4.24
50 51 1.377202 GAGGATGCAAACGGGAGCA 60.377 57.895 0.00 0.54 45.92 4.26
51 52 0.678048 AAGAGGATGCAAACGGGAGC 60.678 55.000 0.00 0.00 0.00 4.70
52 53 1.470098 CAAAGAGGATGCAAACGGGAG 59.530 52.381 0.00 0.00 0.00 4.30
53 54 1.073125 TCAAAGAGGATGCAAACGGGA 59.927 47.619 0.00 0.00 0.00 5.14
54 55 1.200020 GTCAAAGAGGATGCAAACGGG 59.800 52.381 0.00 0.00 0.00 5.28
55 56 1.135972 CGTCAAAGAGGATGCAAACGG 60.136 52.381 0.00 0.00 0.00 4.44
56 57 1.531149 ACGTCAAAGAGGATGCAAACG 59.469 47.619 0.00 0.00 35.20 3.60
57 58 2.411547 CGACGTCAAAGAGGATGCAAAC 60.412 50.000 17.16 0.00 0.00 2.93
58 59 1.798223 CGACGTCAAAGAGGATGCAAA 59.202 47.619 17.16 0.00 0.00 3.68
59 60 1.428448 CGACGTCAAAGAGGATGCAA 58.572 50.000 17.16 0.00 0.00 4.08
60 61 0.389817 CCGACGTCAAAGAGGATGCA 60.390 55.000 17.16 0.00 0.00 3.96
61 62 0.389948 ACCGACGTCAAAGAGGATGC 60.390 55.000 17.16 0.00 0.00 3.91
62 63 2.080286 AACCGACGTCAAAGAGGATG 57.920 50.000 17.16 0.00 0.00 3.51
63 64 2.224209 ACAAACCGACGTCAAAGAGGAT 60.224 45.455 17.16 0.00 0.00 3.24
64 65 1.137479 ACAAACCGACGTCAAAGAGGA 59.863 47.619 17.16 0.00 0.00 3.71
65 66 1.260561 CACAAACCGACGTCAAAGAGG 59.739 52.381 17.16 10.58 0.00 3.69
66 67 1.931172 ACACAAACCGACGTCAAAGAG 59.069 47.619 17.16 4.60 0.00 2.85
67 68 2.012937 ACACAAACCGACGTCAAAGA 57.987 45.000 17.16 0.00 0.00 2.52
68 69 3.120786 GGATACACAAACCGACGTCAAAG 60.121 47.826 17.16 6.02 0.00 2.77
69 70 2.801679 GGATACACAAACCGACGTCAAA 59.198 45.455 17.16 0.00 0.00 2.69
70 71 2.223994 TGGATACACAAACCGACGTCAA 60.224 45.455 17.16 0.00 46.17 3.18
71 72 1.340568 TGGATACACAAACCGACGTCA 59.659 47.619 17.16 0.00 46.17 4.35
72 73 2.068837 TGGATACACAAACCGACGTC 57.931 50.000 5.18 5.18 46.17 4.34
82 83 7.994848 GCGTATCATCTCGCTTGGATACACA 62.995 48.000 0.00 0.00 44.99 3.72
83 84 5.657795 GCGTATCATCTCGCTTGGATACAC 61.658 50.000 0.00 0.00 44.99 2.90
84 85 3.611766 GCGTATCATCTCGCTTGGATACA 60.612 47.826 0.00 0.00 46.96 2.29
94 95 2.509052 TTTGGGAGCGTATCATCTCG 57.491 50.000 0.00 0.00 0.00 4.04
95 96 4.192317 AGTTTTTGGGAGCGTATCATCTC 58.808 43.478 0.00 0.00 0.00 2.75
96 97 4.222124 AGTTTTTGGGAGCGTATCATCT 57.778 40.909 0.00 0.00 0.00 2.90
97 98 4.965119 AAGTTTTTGGGAGCGTATCATC 57.035 40.909 0.00 0.00 0.00 2.92
98 99 4.764823 TGAAAGTTTTTGGGAGCGTATCAT 59.235 37.500 0.00 0.00 0.00 2.45
99 100 4.138290 TGAAAGTTTTTGGGAGCGTATCA 58.862 39.130 0.00 0.00 0.00 2.15
100 101 4.759516 TGAAAGTTTTTGGGAGCGTATC 57.240 40.909 0.00 0.00 0.00 2.24
101 102 5.944007 AGTATGAAAGTTTTTGGGAGCGTAT 59.056 36.000 0.00 0.00 0.00 3.06
102 103 5.180492 CAGTATGAAAGTTTTTGGGAGCGTA 59.820 40.000 0.00 0.00 39.69 4.42
103 104 4.023193 CAGTATGAAAGTTTTTGGGAGCGT 60.023 41.667 0.00 0.00 39.69 5.07
104 105 4.023193 ACAGTATGAAAGTTTTTGGGAGCG 60.023 41.667 0.00 0.00 39.69 5.03
105 106 5.453567 ACAGTATGAAAGTTTTTGGGAGC 57.546 39.130 0.00 0.00 39.69 4.70
106 107 7.029563 GCATACAGTATGAAAGTTTTTGGGAG 58.970 38.462 22.72 0.00 39.69 4.30
107 108 6.719370 AGCATACAGTATGAAAGTTTTTGGGA 59.281 34.615 22.72 0.00 39.69 4.37
108 109 6.924111 AGCATACAGTATGAAAGTTTTTGGG 58.076 36.000 22.72 0.00 39.69 4.12
109 110 7.692291 CGTAGCATACAGTATGAAAGTTTTTGG 59.308 37.037 22.72 0.00 43.24 3.28
110 111 8.587627 CGTAGCATACAGTATGAAAGTTTTTG 57.412 34.615 22.72 0.00 43.24 2.44
131 132 6.797033 CAGTATGAAAGTTTTTGGAAGCGTAG 59.203 38.462 0.00 0.00 39.69 3.51
132 133 6.261381 ACAGTATGAAAGTTTTTGGAAGCGTA 59.739 34.615 0.00 0.00 39.69 4.42
133 134 5.067283 ACAGTATGAAAGTTTTTGGAAGCGT 59.933 36.000 0.00 0.00 39.69 5.07
134 135 5.519722 ACAGTATGAAAGTTTTTGGAAGCG 58.480 37.500 0.00 0.00 39.69 4.68
135 136 8.296713 TCATACAGTATGAAAGTTTTTGGAAGC 58.703 33.333 19.29 0.00 41.89 3.86
163 164 9.337396 TGGTCGATTTTACTGCTTATTAATGAT 57.663 29.630 0.00 0.00 0.00 2.45
164 165 8.725405 TGGTCGATTTTACTGCTTATTAATGA 57.275 30.769 0.00 0.00 0.00 2.57
165 166 9.781834 TTTGGTCGATTTTACTGCTTATTAATG 57.218 29.630 0.00 0.00 0.00 1.90
166 167 9.783256 GTTTGGTCGATTTTACTGCTTATTAAT 57.217 29.630 0.00 0.00 0.00 1.40
167 168 8.784994 TGTTTGGTCGATTTTACTGCTTATTAA 58.215 29.630 0.00 0.00 0.00 1.40
168 169 8.325421 TGTTTGGTCGATTTTACTGCTTATTA 57.675 30.769 0.00 0.00 0.00 0.98
169 170 7.209471 TGTTTGGTCGATTTTACTGCTTATT 57.791 32.000 0.00 0.00 0.00 1.40
170 171 6.811253 TGTTTGGTCGATTTTACTGCTTAT 57.189 33.333 0.00 0.00 0.00 1.73
171 172 6.621316 TTGTTTGGTCGATTTTACTGCTTA 57.379 33.333 0.00 0.00 0.00 3.09
172 173 5.508200 TTGTTTGGTCGATTTTACTGCTT 57.492 34.783 0.00 0.00 0.00 3.91
173 174 5.508200 TTTGTTTGGTCGATTTTACTGCT 57.492 34.783 0.00 0.00 0.00 4.24
174 175 6.576551 TTTTTGTTTGGTCGATTTTACTGC 57.423 33.333 0.00 0.00 0.00 4.40
194 195 9.010029 AGGTTGATTCGTTATGTACATCTTTTT 57.990 29.630 12.68 0.00 0.00 1.94
195 196 8.450964 CAGGTTGATTCGTTATGTACATCTTTT 58.549 33.333 12.68 0.00 0.00 2.27
196 197 7.606456 ACAGGTTGATTCGTTATGTACATCTTT 59.394 33.333 12.68 0.00 0.00 2.52
197 198 7.064609 CACAGGTTGATTCGTTATGTACATCTT 59.935 37.037 12.68 0.00 0.00 2.40
198 199 6.535150 CACAGGTTGATTCGTTATGTACATCT 59.465 38.462 12.68 0.00 0.00 2.90
199 200 6.238103 CCACAGGTTGATTCGTTATGTACATC 60.238 42.308 12.68 0.00 0.00 3.06
200 201 5.584649 CCACAGGTTGATTCGTTATGTACAT 59.415 40.000 13.93 13.93 0.00 2.29
201 202 4.932799 CCACAGGTTGATTCGTTATGTACA 59.067 41.667 0.00 0.00 0.00 2.90
202 203 4.933400 ACCACAGGTTGATTCGTTATGTAC 59.067 41.667 0.00 0.00 27.29 2.90
203 204 5.155278 ACCACAGGTTGATTCGTTATGTA 57.845 39.130 0.00 0.00 27.29 2.29
204 205 4.015872 ACCACAGGTTGATTCGTTATGT 57.984 40.909 0.00 0.00 27.29 2.29
217 218 2.158667 CCTAACCAACTCAACCACAGGT 60.159 50.000 0.00 0.00 37.65 4.00
218 219 2.158667 ACCTAACCAACTCAACCACAGG 60.159 50.000 0.00 0.00 0.00 4.00
219 220 2.878406 CACCTAACCAACTCAACCACAG 59.122 50.000 0.00 0.00 0.00 3.66
220 221 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
221 222 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
222 223 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
223 224 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
224 225 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
225 226 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
226 227 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
227 228 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
228 229 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
229 230 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
230 231 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
231 232 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
232 233 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
233 234 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
248 249 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
249 250 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
264 265 2.618045 CGAGCACCAGGATTTAAACCCT 60.618 50.000 0.00 0.00 0.00 4.34
265 266 1.743394 CGAGCACCAGGATTTAAACCC 59.257 52.381 0.00 0.00 0.00 4.11
266 267 1.132453 GCGAGCACCAGGATTTAAACC 59.868 52.381 0.00 0.00 0.00 3.27
267 268 1.810151 TGCGAGCACCAGGATTTAAAC 59.190 47.619 0.00 0.00 0.00 2.01
268 269 2.192664 TGCGAGCACCAGGATTTAAA 57.807 45.000 0.00 0.00 0.00 1.52
269 270 2.418368 ATGCGAGCACCAGGATTTAA 57.582 45.000 0.00 0.00 0.00 1.52
270 271 2.418368 AATGCGAGCACCAGGATTTA 57.582 45.000 0.00 0.00 0.00 1.40
271 272 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
272 273 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
273 274 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
274 275 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
275 276 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
276 277 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
277 278 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
278 279 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
279 280 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
280 281 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
281 282 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
282 283 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
283 284 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
293 294 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
294 295 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
295 296 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
296 297 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
297 298 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
298 299 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
299 300 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
300 301 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
301 302 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
302 303 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
303 304 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
304 305 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
305 306 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
306 307 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
307 308 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
318 319 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
319 320 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
320 321 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
321 322 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
322 323 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
323 324 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
324 325 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
325 326 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
326 327 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
327 328 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
328 329 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
329 330 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
330 331 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
351 352 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
352 353 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
365 366 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
366 367 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
367 368 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
368 369 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
369 370 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
370 371 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
371 372 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
372 373 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
373 374 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
374 375 7.386025 TGGCATATCATCTTGAGATTTACGAAG 59.614 37.037 0.00 0.00 31.21 3.79
375 376 7.216494 TGGCATATCATCTTGAGATTTACGAA 58.784 34.615 0.00 0.00 31.21 3.85
376 377 6.758254 TGGCATATCATCTTGAGATTTACGA 58.242 36.000 0.00 0.00 31.21 3.43
377 378 6.401903 GCTGGCATATCATCTTGAGATTTACG 60.402 42.308 0.00 0.00 31.21 3.18
378 379 6.654161 AGCTGGCATATCATCTTGAGATTTAC 59.346 38.462 0.00 0.00 31.21 2.01
379 380 6.776744 AGCTGGCATATCATCTTGAGATTTA 58.223 36.000 0.00 0.00 31.21 1.40
380 381 5.632118 AGCTGGCATATCATCTTGAGATTT 58.368 37.500 0.00 0.00 31.21 2.17
381 382 5.221864 TGAGCTGGCATATCATCTTGAGATT 60.222 40.000 0.00 0.00 31.21 2.40
382 383 4.286291 TGAGCTGGCATATCATCTTGAGAT 59.714 41.667 0.00 0.00 34.56 2.75
383 384 3.644738 TGAGCTGGCATATCATCTTGAGA 59.355 43.478 0.00 0.00 0.00 3.27
384 385 3.997681 CTGAGCTGGCATATCATCTTGAG 59.002 47.826 0.00 0.00 0.00 3.02
385 386 3.390311 ACTGAGCTGGCATATCATCTTGA 59.610 43.478 0.00 0.00 0.00 3.02
386 387 3.741249 ACTGAGCTGGCATATCATCTTG 58.259 45.455 0.00 0.00 0.00 3.02
387 388 3.647113 AGACTGAGCTGGCATATCATCTT 59.353 43.478 0.00 0.00 0.00 2.40
388 389 3.241156 AGACTGAGCTGGCATATCATCT 58.759 45.455 0.00 5.63 0.00 2.90
389 390 3.258872 AGAGACTGAGCTGGCATATCATC 59.741 47.826 0.00 3.89 0.00 2.92
390 391 3.241156 AGAGACTGAGCTGGCATATCAT 58.759 45.455 0.00 0.00 0.00 2.45
391 392 2.627221 GAGAGACTGAGCTGGCATATCA 59.373 50.000 0.00 0.00 0.00 2.15
392 393 2.351641 CGAGAGACTGAGCTGGCATATC 60.352 54.545 0.00 0.00 0.00 1.63
393 394 1.612950 CGAGAGACTGAGCTGGCATAT 59.387 52.381 0.00 0.00 0.00 1.78
394 395 1.028130 CGAGAGACTGAGCTGGCATA 58.972 55.000 0.00 0.00 0.00 3.14
395 396 1.674764 CCGAGAGACTGAGCTGGCAT 61.675 60.000 0.00 0.00 0.00 4.40
396 397 2.346541 CCGAGAGACTGAGCTGGCA 61.347 63.158 0.00 0.00 0.00 4.92
397 398 2.003658 CTCCGAGAGACTGAGCTGGC 62.004 65.000 0.00 0.00 0.00 4.85
398 399 1.383456 CCTCCGAGAGACTGAGCTGG 61.383 65.000 0.00 0.00 0.00 4.85
399 400 0.679640 ACCTCCGAGAGACTGAGCTG 60.680 60.000 0.00 0.00 0.00 4.24
400 401 0.679640 CACCTCCGAGAGACTGAGCT 60.680 60.000 0.00 0.00 0.00 4.09
401 402 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
402 403 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
403 404 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
404 405 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
405 406 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
406 407 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
407 408 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
408 409 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
409 410 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
410 411 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
411 412 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
412 413 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
413 414 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
414 415 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
415 416 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
416 417 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
417 418 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
418 419 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
419 420 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
420 421 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
421 422 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
422 423 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
423 424 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
424 425 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
425 426 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
426 427 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
427 428 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
428 429 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
429 430 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
430 431 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
433 434 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
434 435 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
435 436 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
436 437 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
437 438 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
438 439 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
439 440 1.977188 TCTCTATGAACGCACACACG 58.023 50.000 0.00 0.00 39.50 4.49
440 441 3.511699 TCATCTCTATGAACGCACACAC 58.488 45.455 0.00 0.00 39.20 3.82
441 442 3.193479 ACTCATCTCTATGAACGCACACA 59.807 43.478 0.00 0.00 41.57 3.72
442 443 3.549471 CACTCATCTCTATGAACGCACAC 59.451 47.826 0.00 0.00 41.57 3.82
443 444 3.193479 ACACTCATCTCTATGAACGCACA 59.807 43.478 0.00 0.00 41.57 4.57
444 445 3.775202 ACACTCATCTCTATGAACGCAC 58.225 45.455 0.00 0.00 41.57 5.34
445 446 5.067805 ACATACACTCATCTCTATGAACGCA 59.932 40.000 0.00 0.00 41.57 5.24
446 447 5.400782 CACATACACTCATCTCTATGAACGC 59.599 44.000 0.00 0.00 41.57 4.84
447 448 5.400782 GCACATACACTCATCTCTATGAACG 59.599 44.000 0.00 0.00 41.57 3.95
448 449 5.400782 CGCACATACACTCATCTCTATGAAC 59.599 44.000 0.00 0.00 41.57 3.18
449 450 5.067805 ACGCACATACACTCATCTCTATGAA 59.932 40.000 0.00 0.00 41.57 2.57
450 451 4.580580 ACGCACATACACTCATCTCTATGA 59.419 41.667 0.00 0.00 39.87 2.15
451 452 4.678742 CACGCACATACACTCATCTCTATG 59.321 45.833 0.00 0.00 0.00 2.23
452 453 4.339530 ACACGCACATACACTCATCTCTAT 59.660 41.667 0.00 0.00 0.00 1.98
453 454 3.694566 ACACGCACATACACTCATCTCTA 59.305 43.478 0.00 0.00 0.00 2.43
454 455 2.493675 ACACGCACATACACTCATCTCT 59.506 45.455 0.00 0.00 0.00 3.10
455 456 2.881074 ACACGCACATACACTCATCTC 58.119 47.619 0.00 0.00 0.00 2.75
456 457 4.655762 ATACACGCACATACACTCATCT 57.344 40.909 0.00 0.00 0.00 2.90
457 458 6.149633 TCATATACACGCACATACACTCATC 58.850 40.000 0.00 0.00 0.00 2.92
458 459 6.084326 TCATATACACGCACATACACTCAT 57.916 37.500 0.00 0.00 0.00 2.90
459 460 5.508200 TCATATACACGCACATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
460 461 4.383052 GCTCATATACACGCACATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
461 462 4.299155 GCTCATATACACGCACATACACT 58.701 43.478 0.00 0.00 0.00 3.55
462 463 3.119628 CGCTCATATACACGCACATACAC 59.880 47.826 0.00 0.00 0.00 2.90
463 464 3.305110 CGCTCATATACACGCACATACA 58.695 45.455 0.00 0.00 0.00 2.29
464 465 3.954030 CGCTCATATACACGCACATAC 57.046 47.619 0.00 0.00 0.00 2.39
471 472 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
472 473 4.142902 ACAAACACAAGCGCTCATATACAC 60.143 41.667 12.06 0.00 0.00 2.90
473 474 4.000325 ACAAACACAAGCGCTCATATACA 59.000 39.130 12.06 0.00 0.00 2.29
474 475 4.600012 ACAAACACAAGCGCTCATATAC 57.400 40.909 12.06 0.00 0.00 1.47
475 476 5.290885 CAGTACAAACACAAGCGCTCATATA 59.709 40.000 12.06 0.00 0.00 0.86
476 477 4.093408 CAGTACAAACACAAGCGCTCATAT 59.907 41.667 12.06 0.00 0.00 1.78
477 478 3.431912 CAGTACAAACACAAGCGCTCATA 59.568 43.478 12.06 0.00 0.00 2.15
478 479 2.224079 CAGTACAAACACAAGCGCTCAT 59.776 45.455 12.06 0.00 0.00 2.90
479 480 1.597195 CAGTACAAACACAAGCGCTCA 59.403 47.619 12.06 0.00 0.00 4.26
480 481 1.864711 TCAGTACAAACACAAGCGCTC 59.135 47.619 12.06 0.00 0.00 5.03
481 482 1.948104 TCAGTACAAACACAAGCGCT 58.052 45.000 2.64 2.64 0.00 5.92
482 483 2.574322 CATCAGTACAAACACAAGCGC 58.426 47.619 0.00 0.00 0.00 5.92
483 484 2.224079 AGCATCAGTACAAACACAAGCG 59.776 45.455 0.00 0.00 0.00 4.68
484 485 3.904136 AGCATCAGTACAAACACAAGC 57.096 42.857 0.00 0.00 0.00 4.01
511 512 6.418956 CGCGCAAGTATATGTACATCTTTTT 58.581 36.000 12.68 0.89 41.68 1.94
512 513 5.558273 GCGCGCAAGTATATGTACATCTTTT 60.558 40.000 29.10 0.53 41.68 2.27
513 514 4.084537 GCGCGCAAGTATATGTACATCTTT 60.085 41.667 29.10 1.39 41.68 2.52
514 515 3.428870 GCGCGCAAGTATATGTACATCTT 59.571 43.478 29.10 7.04 41.68 2.40
515 516 2.987149 GCGCGCAAGTATATGTACATCT 59.013 45.455 29.10 5.18 41.68 2.90
516 517 2.092211 GGCGCGCAAGTATATGTACATC 59.908 50.000 34.42 5.13 41.68 3.06
517 518 2.066262 GGCGCGCAAGTATATGTACAT 58.934 47.619 34.42 13.93 41.68 2.29
518 519 1.067974 AGGCGCGCAAGTATATGTACA 59.932 47.619 34.42 0.00 41.68 2.90
519 520 1.719780 GAGGCGCGCAAGTATATGTAC 59.280 52.381 34.42 10.63 41.68 2.90
520 521 1.336517 GGAGGCGCGCAAGTATATGTA 60.337 52.381 34.42 0.00 41.68 2.29
521 522 0.600255 GGAGGCGCGCAAGTATATGT 60.600 55.000 34.42 4.60 41.68 2.29
522 523 1.291877 GGGAGGCGCGCAAGTATATG 61.292 60.000 34.42 0.00 41.68 1.78
523 524 1.004918 GGGAGGCGCGCAAGTATAT 60.005 57.895 34.42 8.78 41.68 0.86
524 525 2.420043 GGGAGGCGCGCAAGTATA 59.580 61.111 34.42 0.00 41.68 1.47
525 526 4.891727 CGGGAGGCGCGCAAGTAT 62.892 66.667 34.42 12.74 41.68 2.12
598 608 0.179062 GGACGTCGGCTAGGTAGAGA 60.179 60.000 9.92 0.00 0.00 3.10
1227 1301 3.264193 TGTTGTATGAGAAGGCATCAGGT 59.736 43.478 0.00 0.00 0.00 4.00
1310 1384 0.970937 TCCTTCCTTCGACGCCATCT 60.971 55.000 0.00 0.00 0.00 2.90
1318 1392 1.229209 AGGCACCTCCTTCCTTCGA 60.229 57.895 0.00 0.00 44.75 3.71
1319 1393 1.078848 CAGGCACCTCCTTCCTTCG 60.079 63.158 0.00 0.00 44.75 3.79
1320 1394 1.377856 GCAGGCACCTCCTTCCTTC 60.378 63.158 0.00 0.00 44.75 3.46
1323 1397 2.270527 GAGCAGGCACCTCCTTCC 59.729 66.667 0.00 0.00 44.75 3.46
1334 1411 4.181010 CCATGTCGGGGGAGCAGG 62.181 72.222 0.00 0.00 0.00 4.85
1348 1425 0.764890 ACCGTGCTATATGCCACCAT 59.235 50.000 3.03 0.00 42.00 3.55
1420 1497 1.269413 CCCTTGCCGCATCATTTCATC 60.269 52.381 0.00 0.00 0.00 2.92
1504 1581 3.740115 GAAGGAACAACTCTGCCTTGTA 58.260 45.455 0.00 0.00 40.64 2.41
1612 1689 3.745975 TCTCTGAACATTTTACGCACCTG 59.254 43.478 0.00 0.00 0.00 4.00
1757 1834 5.467063 GTGTAGGAGACAATATTAGGCTTGC 59.533 44.000 0.00 0.00 40.66 4.01
2013 2090 4.521146 CATCAGTCAGCTTACCCATTCTT 58.479 43.478 0.00 0.00 0.00 2.52
2037 2114 5.678583 ACCATCTGACTGAACTTATCCATG 58.321 41.667 0.00 0.00 0.00 3.66
2176 2253 3.067106 CAGTGTTTGGACGAGCAATACT 58.933 45.455 0.00 0.00 0.00 2.12
2205 2282 7.791029 TGCATAGACTGTCCATTATTGAACTA 58.209 34.615 3.76 0.00 0.00 2.24
2528 2608 5.268544 CAGCACGAAATAATCCATTCAGTG 58.731 41.667 0.00 0.00 35.34 3.66
2581 2661 7.953158 TTATTCCACTTTCGATCATCTCATC 57.047 36.000 0.00 0.00 0.00 2.92
2674 2754 5.231568 CACGTAATTTCTGGAATAGGACGAC 59.768 44.000 14.14 0.00 34.82 4.34
2804 2884 1.847798 ATTAGGCACCAACCCGCTGA 61.848 55.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.