Multiple sequence alignment - TraesCS1A01G067000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G067000 chr1A 100.000 4151 0 0 1 4151 49244482 49248632 0.000000e+00 7666
1 TraesCS1A01G067000 chr1A 82.377 2684 435 30 727 3392 49346793 49349456 0.000000e+00 2302
2 TraesCS1A01G067000 chr1A 83.260 2515 386 27 713 3208 49354813 49357311 0.000000e+00 2279
3 TraesCS1A01G067000 chr1A 82.825 2428 397 18 780 3195 49293473 49295892 0.000000e+00 2156
4 TraesCS1A01G067000 chr1B 91.308 3555 214 38 609 4150 70169716 70173188 0.000000e+00 4765
5 TraesCS1A01G067000 chr1B 89.151 3134 298 17 1032 4150 70185802 70188908 0.000000e+00 3866
6 TraesCS1A01G067000 chr1D 88.659 3580 329 40 593 4150 49616943 49620467 0.000000e+00 4290
7 TraesCS1A01G067000 chr1D 83.420 2684 413 24 719 3391 49973259 49975921 0.000000e+00 2462
8 TraesCS1A01G067000 chr1D 84.200 2443 361 16 715 3144 50022611 50025041 0.000000e+00 2350
9 TraesCS1A01G067000 chr1D 81.874 2593 422 36 746 3319 49426293 49423730 0.000000e+00 2141
10 TraesCS1A01G067000 chr1D 93.215 339 16 4 3 335 409056816 409056479 3.730000e-135 492
11 TraesCS1A01G067000 chrUn 94.512 328 12 3 3 325 382207449 382207123 6.200000e-138 501
12 TraesCS1A01G067000 chrUn 93.851 309 15 3 20 325 351167742 351168049 2.920000e-126 462
13 TraesCS1A01G067000 chr5B 94.207 328 13 3 3 325 627402828 627402502 2.880000e-136 496
14 TraesCS1A01G067000 chr5A 93.333 330 16 3 1 325 492839402 492839074 2.240000e-132 483
15 TraesCS1A01G067000 chr5A 92.727 330 18 3 1 325 492890133 492890461 4.860000e-129 472
16 TraesCS1A01G067000 chr5D 92.625 339 18 4 3 335 15320685 15320348 8.070000e-132 481
17 TraesCS1A01G067000 chr6A 92.966 327 14 4 1 319 485354446 485354121 6.280000e-128 468
18 TraesCS1A01G067000 chr4D 92.192 333 19 4 3 329 815831 816162 8.130000e-127 464


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G067000 chr1A 49244482 49248632 4150 False 7666 7666 100.000 1 4151 1 chr1A.!!$F1 4150
1 TraesCS1A01G067000 chr1A 49346793 49349456 2663 False 2302 2302 82.377 727 3392 1 chr1A.!!$F3 2665
2 TraesCS1A01G067000 chr1A 49354813 49357311 2498 False 2279 2279 83.260 713 3208 1 chr1A.!!$F4 2495
3 TraesCS1A01G067000 chr1A 49293473 49295892 2419 False 2156 2156 82.825 780 3195 1 chr1A.!!$F2 2415
4 TraesCS1A01G067000 chr1B 70169716 70173188 3472 False 4765 4765 91.308 609 4150 1 chr1B.!!$F1 3541
5 TraesCS1A01G067000 chr1B 70185802 70188908 3106 False 3866 3866 89.151 1032 4150 1 chr1B.!!$F2 3118
6 TraesCS1A01G067000 chr1D 49616943 49620467 3524 False 4290 4290 88.659 593 4150 1 chr1D.!!$F1 3557
7 TraesCS1A01G067000 chr1D 49973259 49975921 2662 False 2462 2462 83.420 719 3391 1 chr1D.!!$F2 2672
8 TraesCS1A01G067000 chr1D 50022611 50025041 2430 False 2350 2350 84.200 715 3144 1 chr1D.!!$F3 2429
9 TraesCS1A01G067000 chr1D 49423730 49426293 2563 True 2141 2141 81.874 746 3319 1 chr1D.!!$R1 2573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 570 0.031716 CTCCTCCTCCTCCACATCCA 60.032 60.0 0.0 0.0 0.00 3.41 F
627 628 0.174617 CCTCCGCAACTCCTTCTCTC 59.825 60.0 0.0 0.0 0.00 3.20 F
741 742 0.350904 TCCTCCTCCTCCTCCTCCTA 59.649 60.0 0.0 0.0 0.00 2.94 F
2564 2603 0.752658 GGGTTATTTCATGCTGGGGC 59.247 55.0 0.0 0.0 39.26 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1727 3.650298 TTGCAGAGGGAGGCCATGC 62.650 63.158 5.01 5.81 37.40 4.06 R
2564 2603 4.330620 ACAACTTCTTTGCAGCAATTGTTG 59.669 37.500 25.05 25.05 39.01 3.33 R
2653 2692 6.375736 TCATCGGTGCAATTATTCCTACAAAA 59.624 34.615 0.00 0.00 0.00 2.44 R
3662 3718 0.455005 GAGCTGAGCCCAATTGCTTC 59.545 55.000 0.00 0.00 42.95 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.580788 TCAAATGATCAGAGAGAGATGAACC 58.419 40.000 0.09 0.00 0.00 3.62
34 35 6.383436 TCAAATGATCAGAGAGAGATGAACCT 59.617 38.462 0.09 0.00 0.00 3.50
35 36 5.794726 ATGATCAGAGAGAGATGAACCTG 57.205 43.478 0.09 0.00 0.00 4.00
36 37 3.959449 TGATCAGAGAGAGATGAACCTGG 59.041 47.826 0.00 0.00 0.00 4.45
37 38 2.744760 TCAGAGAGAGATGAACCTGGG 58.255 52.381 0.00 0.00 0.00 4.45
38 39 1.138661 CAGAGAGAGATGAACCTGGGC 59.861 57.143 0.00 0.00 0.00 5.36
39 40 1.198713 GAGAGAGATGAACCTGGGCA 58.801 55.000 0.00 0.00 0.00 5.36
40 41 0.908198 AGAGAGATGAACCTGGGCAC 59.092 55.000 0.00 0.00 0.00 5.01
55 56 4.641645 CACCAGCCGAACCCAGCA 62.642 66.667 0.00 0.00 0.00 4.41
56 57 4.335647 ACCAGCCGAACCCAGCAG 62.336 66.667 0.00 0.00 0.00 4.24
59 60 4.711949 AGCCGAACCCAGCAGCAG 62.712 66.667 0.00 0.00 0.00 4.24
70 71 4.385405 GCAGCAGCTCCTGGACGT 62.385 66.667 6.82 0.00 37.91 4.34
71 72 2.433838 CAGCAGCTCCTGGACGTG 60.434 66.667 0.00 0.00 31.21 4.49
72 73 3.699894 AGCAGCTCCTGGACGTGG 61.700 66.667 0.00 0.00 31.21 4.94
73 74 4.767255 GCAGCTCCTGGACGTGGG 62.767 72.222 0.00 0.00 31.21 4.61
74 75 2.997315 CAGCTCCTGGACGTGGGA 60.997 66.667 0.00 0.00 0.00 4.37
78 79 2.037367 TCCTGGACGTGGGAGAGG 59.963 66.667 0.00 0.00 0.00 3.69
79 80 2.037367 CCTGGACGTGGGAGAGGA 59.963 66.667 0.00 0.00 0.00 3.71
80 81 2.055042 CCTGGACGTGGGAGAGGAG 61.055 68.421 0.00 0.00 0.00 3.69
81 82 2.037367 TGGACGTGGGAGAGGAGG 59.963 66.667 0.00 0.00 0.00 4.30
82 83 2.359404 GGACGTGGGAGAGGAGGA 59.641 66.667 0.00 0.00 0.00 3.71
83 84 1.755008 GGACGTGGGAGAGGAGGAG 60.755 68.421 0.00 0.00 0.00 3.69
84 85 2.363147 ACGTGGGAGAGGAGGAGC 60.363 66.667 0.00 0.00 0.00 4.70
85 86 2.363018 CGTGGGAGAGGAGGAGCA 60.363 66.667 0.00 0.00 0.00 4.26
86 87 2.716017 CGTGGGAGAGGAGGAGCAC 61.716 68.421 0.00 0.00 0.00 4.40
87 88 2.039624 TGGGAGAGGAGGAGCACC 59.960 66.667 0.00 0.00 0.00 5.01
110 111 4.100084 CTGGATGCAGTGGCCGGA 62.100 66.667 5.05 0.00 40.13 5.14
111 112 4.100084 TGGATGCAGTGGCCGGAG 62.100 66.667 5.05 0.00 40.13 4.63
124 125 3.145551 CGGAGGTGGGTACGGAGG 61.146 72.222 0.00 0.00 0.00 4.30
125 126 2.038490 GGAGGTGGGTACGGAGGT 59.962 66.667 0.00 0.00 0.00 3.85
126 127 2.356780 GGAGGTGGGTACGGAGGTG 61.357 68.421 0.00 0.00 0.00 4.00
127 128 2.284405 AGGTGGGTACGGAGGTGG 60.284 66.667 0.00 0.00 0.00 4.61
128 129 2.284112 GGTGGGTACGGAGGTGGA 60.284 66.667 0.00 0.00 0.00 4.02
129 130 2.356780 GGTGGGTACGGAGGTGGAG 61.357 68.421 0.00 0.00 0.00 3.86
130 131 1.304713 GTGGGTACGGAGGTGGAGA 60.305 63.158 0.00 0.00 0.00 3.71
131 132 0.686769 GTGGGTACGGAGGTGGAGAT 60.687 60.000 0.00 0.00 0.00 2.75
132 133 0.686441 TGGGTACGGAGGTGGAGATG 60.686 60.000 0.00 0.00 0.00 2.90
133 134 1.400530 GGGTACGGAGGTGGAGATGG 61.401 65.000 0.00 0.00 0.00 3.51
134 135 0.396695 GGTACGGAGGTGGAGATGGA 60.397 60.000 0.00 0.00 0.00 3.41
135 136 1.033574 GTACGGAGGTGGAGATGGAG 58.966 60.000 0.00 0.00 0.00 3.86
136 137 0.106167 TACGGAGGTGGAGATGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
137 138 1.075970 CGGAGGTGGAGATGGAGGA 60.076 63.158 0.00 0.00 0.00 3.71
138 139 0.687757 CGGAGGTGGAGATGGAGGAA 60.688 60.000 0.00 0.00 0.00 3.36
139 140 0.833949 GGAGGTGGAGATGGAGGAAC 59.166 60.000 0.00 0.00 0.00 3.62
140 141 1.573108 GAGGTGGAGATGGAGGAACA 58.427 55.000 0.00 0.00 0.00 3.18
141 142 1.484240 GAGGTGGAGATGGAGGAACAG 59.516 57.143 0.00 0.00 0.00 3.16
142 143 0.107459 GGTGGAGATGGAGGAACAGC 60.107 60.000 0.00 0.00 0.00 4.40
143 144 0.107459 GTGGAGATGGAGGAACAGCC 60.107 60.000 0.00 0.00 0.00 4.85
159 160 4.767255 CCTGTGCTCGCCTCCACC 62.767 72.222 0.00 0.00 0.00 4.61
160 161 3.699894 CTGTGCTCGCCTCCACCT 61.700 66.667 0.00 0.00 0.00 4.00
161 162 3.947132 CTGTGCTCGCCTCCACCTG 62.947 68.421 0.00 0.00 0.00 4.00
162 163 4.767255 GTGCTCGCCTCCACCTGG 62.767 72.222 0.00 0.00 0.00 4.45
179 180 4.803426 GGCGCAGGTCACGAGGAG 62.803 72.222 10.83 0.00 0.00 3.69
181 182 4.803426 CGCAGGTCACGAGGAGCC 62.803 72.222 7.27 0.00 45.21 4.70
182 183 4.459089 GCAGGTCACGAGGAGCCC 62.459 72.222 7.27 0.00 45.21 5.19
183 184 3.775654 CAGGTCACGAGGAGCCCC 61.776 72.222 7.27 0.00 45.21 5.80
185 186 3.775654 GGTCACGAGGAGCCCCTG 61.776 72.222 0.00 0.00 44.53 4.45
186 187 2.997897 GTCACGAGGAGCCCCTGT 60.998 66.667 0.00 0.00 44.53 4.00
187 188 2.997315 TCACGAGGAGCCCCTGTG 60.997 66.667 0.00 0.53 44.53 3.66
188 189 3.314331 CACGAGGAGCCCCTGTGT 61.314 66.667 0.00 0.00 44.53 3.72
189 190 3.314331 ACGAGGAGCCCCTGTGTG 61.314 66.667 0.00 0.00 44.53 3.82
190 191 4.087892 CGAGGAGCCCCTGTGTGG 62.088 72.222 0.00 0.00 44.53 4.17
220 221 1.153469 GCACCAGCTCTACTCCAGC 60.153 63.158 0.00 0.00 37.91 4.85
221 222 1.140589 CACCAGCTCTACTCCAGCG 59.859 63.158 0.00 0.00 42.14 5.18
222 223 2.055042 ACCAGCTCTACTCCAGCGG 61.055 63.158 0.00 0.00 42.14 5.52
223 224 2.105930 CAGCTCTACTCCAGCGGC 59.894 66.667 0.00 0.00 42.14 6.53
224 225 3.522731 AGCTCTACTCCAGCGGCG 61.523 66.667 0.51 0.51 42.14 6.46
225 226 4.577246 GCTCTACTCCAGCGGCGG 62.577 72.222 9.78 4.77 0.00 6.13
226 227 4.577246 CTCTACTCCAGCGGCGGC 62.577 72.222 9.78 8.43 40.37 6.53
228 229 4.880537 CTACTCCAGCGGCGGCAG 62.881 72.222 19.21 10.49 43.41 4.85
257 258 3.866582 GGGGCGGAGGTGGAGATG 61.867 72.222 0.00 0.00 0.00 2.90
258 259 3.866582 GGGCGGAGGTGGAGATGG 61.867 72.222 0.00 0.00 0.00 3.51
259 260 2.764128 GGCGGAGGTGGAGATGGA 60.764 66.667 0.00 0.00 0.00 3.41
260 261 2.801631 GGCGGAGGTGGAGATGGAG 61.802 68.421 0.00 0.00 0.00 3.86
261 262 2.801631 GCGGAGGTGGAGATGGAGG 61.802 68.421 0.00 0.00 0.00 4.30
262 263 2.136878 CGGAGGTGGAGATGGAGGG 61.137 68.421 0.00 0.00 0.00 4.30
263 264 2.447714 GGAGGTGGAGATGGAGGGC 61.448 68.421 0.00 0.00 0.00 5.19
264 265 2.765807 AGGTGGAGATGGAGGGCG 60.766 66.667 0.00 0.00 0.00 6.13
265 266 3.866582 GGTGGAGATGGAGGGCGG 61.867 72.222 0.00 0.00 0.00 6.13
266 267 2.764128 GTGGAGATGGAGGGCGGA 60.764 66.667 0.00 0.00 0.00 5.54
267 268 2.444706 TGGAGATGGAGGGCGGAG 60.445 66.667 0.00 0.00 0.00 4.63
268 269 3.237741 GGAGATGGAGGGCGGAGG 61.238 72.222 0.00 0.00 0.00 4.30
269 270 2.444895 GAGATGGAGGGCGGAGGT 60.445 66.667 0.00 0.00 0.00 3.85
270 271 2.765807 AGATGGAGGGCGGAGGTG 60.766 66.667 0.00 0.00 0.00 4.00
271 272 3.866582 GATGGAGGGCGGAGGTGG 61.867 72.222 0.00 0.00 0.00 4.61
272 273 4.414956 ATGGAGGGCGGAGGTGGA 62.415 66.667 0.00 0.00 0.00 4.02
275 276 3.083997 GAGGGCGGAGGTGGACAT 61.084 66.667 0.00 0.00 0.00 3.06
276 277 3.391665 GAGGGCGGAGGTGGACATG 62.392 68.421 0.00 0.00 0.00 3.21
277 278 4.489771 GGGCGGAGGTGGACATGG 62.490 72.222 0.00 0.00 0.00 3.66
278 279 3.399181 GGCGGAGGTGGACATGGA 61.399 66.667 0.00 0.00 0.00 3.41
279 280 2.187946 GCGGAGGTGGACATGGAG 59.812 66.667 0.00 0.00 0.00 3.86
280 281 2.903357 CGGAGGTGGACATGGAGG 59.097 66.667 0.00 0.00 0.00 4.30
281 282 1.990060 CGGAGGTGGACATGGAGGT 60.990 63.158 0.00 0.00 0.00 3.85
282 283 1.604378 GGAGGTGGACATGGAGGTG 59.396 63.158 0.00 0.00 0.00 4.00
283 284 1.604378 GAGGTGGACATGGAGGTGG 59.396 63.158 0.00 0.00 0.00 4.61
284 285 0.909610 GAGGTGGACATGGAGGTGGA 60.910 60.000 0.00 0.00 0.00 4.02
285 286 0.911525 AGGTGGACATGGAGGTGGAG 60.912 60.000 0.00 0.00 0.00 3.86
286 287 1.604378 GTGGACATGGAGGTGGAGG 59.396 63.158 0.00 0.00 0.00 4.30
287 288 1.616327 TGGACATGGAGGTGGAGGG 60.616 63.158 0.00 0.00 0.00 4.30
288 289 1.616628 GGACATGGAGGTGGAGGGT 60.617 63.158 0.00 0.00 0.00 4.34
289 290 1.604378 GACATGGAGGTGGAGGGTG 59.396 63.158 0.00 0.00 0.00 4.61
290 291 1.915078 GACATGGAGGTGGAGGGTGG 61.915 65.000 0.00 0.00 0.00 4.61
291 292 1.616327 CATGGAGGTGGAGGGTGGA 60.616 63.158 0.00 0.00 0.00 4.02
292 293 1.307343 ATGGAGGTGGAGGGTGGAG 60.307 63.158 0.00 0.00 0.00 3.86
293 294 2.689034 GGAGGTGGAGGGTGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
294 295 2.122954 GAGGTGGAGGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
295 296 2.203998 AGGTGGAGGGTGGAGGTG 60.204 66.667 0.00 0.00 0.00 4.00
296 297 3.330720 GGTGGAGGGTGGAGGTGG 61.331 72.222 0.00 0.00 0.00 4.61
297 298 2.203938 GTGGAGGGTGGAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
298 299 2.122729 TGGAGGGTGGAGGTGGAG 59.877 66.667 0.00 0.00 0.00 3.86
299 300 2.689034 GGAGGGTGGAGGTGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
300 301 2.689034 GAGGGTGGAGGTGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
304 305 3.319198 GTGGAGGTGGAGGGCGAA 61.319 66.667 0.00 0.00 0.00 4.70
305 306 2.528127 TGGAGGTGGAGGGCGAAA 60.528 61.111 0.00 0.00 0.00 3.46
306 307 2.269241 GGAGGTGGAGGGCGAAAG 59.731 66.667 0.00 0.00 0.00 2.62
318 319 2.125512 CGAAAGCGGAGGTGGAGG 60.126 66.667 0.00 0.00 39.47 4.30
319 320 2.436824 GAAAGCGGAGGTGGAGGC 60.437 66.667 0.00 0.00 39.47 4.70
320 321 4.394712 AAAGCGGAGGTGGAGGCG 62.395 66.667 0.00 0.00 39.47 5.52
326 327 3.775654 GAGGTGGAGGCGGAGGTG 61.776 72.222 0.00 0.00 0.00 4.00
329 330 3.319198 GTGGAGGCGGAGGTGGAA 61.319 66.667 0.00 0.00 0.00 3.53
330 331 3.003173 TGGAGGCGGAGGTGGAAG 61.003 66.667 0.00 0.00 0.00 3.46
331 332 3.003763 GGAGGCGGAGGTGGAAGT 61.004 66.667 0.00 0.00 0.00 3.01
332 333 2.579738 GAGGCGGAGGTGGAAGTC 59.420 66.667 0.00 0.00 0.00 3.01
333 334 3.358076 GAGGCGGAGGTGGAAGTCG 62.358 68.421 0.00 0.00 0.00 4.18
334 335 3.379445 GGCGGAGGTGGAAGTCGA 61.379 66.667 0.00 0.00 0.00 4.20
335 336 2.722201 GGCGGAGGTGGAAGTCGAT 61.722 63.158 0.00 0.00 0.00 3.59
336 337 1.227002 GCGGAGGTGGAAGTCGATC 60.227 63.158 0.00 0.00 0.00 3.69
337 338 1.064296 CGGAGGTGGAAGTCGATCG 59.936 63.158 9.36 9.36 0.00 3.69
338 339 1.374343 CGGAGGTGGAAGTCGATCGA 61.374 60.000 15.15 15.15 0.00 3.59
339 340 1.033574 GGAGGTGGAAGTCGATCGAT 58.966 55.000 22.50 5.91 0.00 3.59
340 341 1.001158 GGAGGTGGAAGTCGATCGATC 60.001 57.143 22.50 15.39 0.00 3.69
353 354 4.732285 CGATCGATCGGGATTCAAATTT 57.268 40.909 34.54 0.00 45.93 1.82
354 355 5.095691 CGATCGATCGGGATTCAAATTTT 57.904 39.130 34.54 0.00 45.93 1.82
355 356 4.905866 CGATCGATCGGGATTCAAATTTTG 59.094 41.667 34.54 5.74 45.93 2.44
356 357 5.277297 CGATCGATCGGGATTCAAATTTTGA 60.277 40.000 34.54 7.74 45.93 2.69
368 369 6.491714 TTCAAATTTTGAAGGGATCACCAA 57.508 33.333 18.29 0.00 44.21 3.67
369 370 5.852827 TCAAATTTTGAAGGGATCACCAAC 58.147 37.500 9.36 0.00 37.92 3.77
370 371 5.365025 TCAAATTTTGAAGGGATCACCAACA 59.635 36.000 9.36 0.00 37.92 3.33
371 372 4.871933 ATTTTGAAGGGATCACCAACAC 57.128 40.909 0.00 0.00 43.89 3.32
372 373 2.286365 TTGAAGGGATCACCAACACC 57.714 50.000 0.00 0.00 43.89 4.16
373 374 0.036164 TGAAGGGATCACCAACACCG 59.964 55.000 0.00 0.00 43.89 4.94
374 375 1.303317 AAGGGATCACCAACACCGC 60.303 57.895 0.00 0.00 43.89 5.68
375 376 2.750237 GGGATCACCAACACCGCC 60.750 66.667 0.00 0.00 39.85 6.13
376 377 2.033448 GGATCACCAACACCGCCA 59.967 61.111 0.00 0.00 35.97 5.69
377 378 2.332654 GGATCACCAACACCGCCAC 61.333 63.158 0.00 0.00 35.97 5.01
378 379 1.599518 GATCACCAACACCGCCACA 60.600 57.895 0.00 0.00 0.00 4.17
379 380 1.852067 GATCACCAACACCGCCACAC 61.852 60.000 0.00 0.00 0.00 3.82
380 381 2.337879 ATCACCAACACCGCCACACT 62.338 55.000 0.00 0.00 0.00 3.55
381 382 1.227704 CACCAACACCGCCACACTA 60.228 57.895 0.00 0.00 0.00 2.74
382 383 1.070786 ACCAACACCGCCACACTAG 59.929 57.895 0.00 0.00 0.00 2.57
383 384 1.369692 CCAACACCGCCACACTAGA 59.630 57.895 0.00 0.00 0.00 2.43
384 385 0.949105 CCAACACCGCCACACTAGAC 60.949 60.000 0.00 0.00 0.00 2.59
385 386 0.249699 CAACACCGCCACACTAGACA 60.250 55.000 0.00 0.00 0.00 3.41
386 387 0.685097 AACACCGCCACACTAGACAT 59.315 50.000 0.00 0.00 0.00 3.06
387 388 0.246635 ACACCGCCACACTAGACATC 59.753 55.000 0.00 0.00 0.00 3.06
388 389 0.802222 CACCGCCACACTAGACATCG 60.802 60.000 0.00 0.00 0.00 3.84
389 390 0.963856 ACCGCCACACTAGACATCGA 60.964 55.000 0.00 0.00 0.00 3.59
390 391 0.385751 CCGCCACACTAGACATCGAT 59.614 55.000 0.00 0.00 0.00 3.59
391 392 1.481240 CGCCACACTAGACATCGATG 58.519 55.000 23.68 23.68 0.00 3.84
392 393 1.202302 CGCCACACTAGACATCGATGT 60.202 52.381 30.37 30.37 45.16 3.06
405 406 5.791336 ACATCGATGTCATGTGTATACCT 57.209 39.130 25.18 0.00 35.87 3.08
406 407 5.532557 ACATCGATGTCATGTGTATACCTG 58.467 41.667 25.18 0.00 35.87 4.00
407 408 5.301805 ACATCGATGTCATGTGTATACCTGA 59.698 40.000 25.18 0.00 35.87 3.86
408 409 5.845391 TCGATGTCATGTGTATACCTGAA 57.155 39.130 0.00 0.00 34.03 3.02
409 410 6.215495 TCGATGTCATGTGTATACCTGAAA 57.785 37.500 0.00 0.00 34.03 2.69
410 411 6.635755 TCGATGTCATGTGTATACCTGAAAA 58.364 36.000 0.00 0.00 34.03 2.29
411 412 7.100409 TCGATGTCATGTGTATACCTGAAAAA 58.900 34.615 0.00 0.00 34.03 1.94
412 413 7.064134 TCGATGTCATGTGTATACCTGAAAAAC 59.936 37.037 0.00 0.00 34.03 2.43
413 414 7.064609 CGATGTCATGTGTATACCTGAAAAACT 59.935 37.037 0.00 0.00 34.03 2.66
414 415 8.635765 ATGTCATGTGTATACCTGAAAAACTT 57.364 30.769 0.00 0.00 34.03 2.66
415 416 8.458573 TGTCATGTGTATACCTGAAAAACTTT 57.541 30.769 0.00 0.00 34.03 2.66
416 417 8.564574 TGTCATGTGTATACCTGAAAAACTTTC 58.435 33.333 0.00 0.00 34.03 2.62
417 418 8.021396 GTCATGTGTATACCTGAAAAACTTTCC 58.979 37.037 0.00 0.00 34.03 3.13
418 419 7.942341 TCATGTGTATACCTGAAAAACTTTCCT 59.058 33.333 0.00 0.00 30.03 3.36
419 420 7.504924 TGTGTATACCTGAAAAACTTTCCTG 57.495 36.000 0.00 0.00 0.00 3.86
420 421 6.016610 TGTGTATACCTGAAAAACTTTCCTGC 60.017 38.462 0.00 0.00 0.00 4.85
421 422 6.206829 GTGTATACCTGAAAAACTTTCCTGCT 59.793 38.462 0.00 0.00 0.00 4.24
422 423 5.712152 ATACCTGAAAAACTTTCCTGCTG 57.288 39.130 0.00 0.00 0.00 4.41
423 424 2.101415 ACCTGAAAAACTTTCCTGCTGC 59.899 45.455 0.00 0.00 0.00 5.25
424 425 2.101249 CCTGAAAAACTTTCCTGCTGCA 59.899 45.455 0.88 0.88 0.00 4.41
425 426 3.118542 CTGAAAAACTTTCCTGCTGCAC 58.881 45.455 0.00 0.00 0.00 4.57
426 427 2.495270 TGAAAAACTTTCCTGCTGCACA 59.505 40.909 0.00 0.00 0.00 4.57
427 428 2.584492 AAAACTTTCCTGCTGCACAC 57.416 45.000 0.00 0.00 0.00 3.82
428 429 0.381801 AAACTTTCCTGCTGCACACG 59.618 50.000 0.00 0.00 0.00 4.49
429 430 0.748005 AACTTTCCTGCTGCACACGT 60.748 50.000 0.00 0.00 0.00 4.49
430 431 0.748005 ACTTTCCTGCTGCACACGTT 60.748 50.000 0.00 0.00 0.00 3.99
431 432 0.040958 CTTTCCTGCTGCACACGTTC 60.041 55.000 0.00 0.00 0.00 3.95
432 433 0.746204 TTTCCTGCTGCACACGTTCA 60.746 50.000 0.00 0.00 0.00 3.18
433 434 0.746204 TTCCTGCTGCACACGTTCAA 60.746 50.000 0.00 0.00 0.00 2.69
434 435 1.009675 CCTGCTGCACACGTTCAAC 60.010 57.895 0.00 0.00 0.00 3.18
435 436 1.713937 CCTGCTGCACACGTTCAACA 61.714 55.000 0.00 0.00 0.00 3.33
436 437 0.589729 CTGCTGCACACGTTCAACAC 60.590 55.000 0.00 0.00 0.00 3.32
437 438 1.298339 GCTGCACACGTTCAACACC 60.298 57.895 0.00 0.00 0.00 4.16
438 439 1.011242 CTGCACACGTTCAACACCG 60.011 57.895 0.00 0.00 0.00 4.94
439 440 2.351888 GCACACGTTCAACACCGC 60.352 61.111 0.00 0.00 0.00 5.68
440 441 2.326550 CACACGTTCAACACCGCC 59.673 61.111 0.00 0.00 0.00 6.13
441 442 2.125065 ACACGTTCAACACCGCCA 60.125 55.556 0.00 0.00 0.00 5.69
442 443 2.326550 CACGTTCAACACCGCCAC 59.673 61.111 0.00 0.00 0.00 5.01
443 444 2.898343 ACGTTCAACACCGCCACC 60.898 61.111 0.00 0.00 0.00 4.61
444 445 2.897846 CGTTCAACACCGCCACCA 60.898 61.111 0.00 0.00 0.00 4.17
445 446 2.473760 CGTTCAACACCGCCACCAA 61.474 57.895 0.00 0.00 0.00 3.67
446 447 1.810532 GTTCAACACCGCCACCAAA 59.189 52.632 0.00 0.00 0.00 3.28
447 448 0.173708 GTTCAACACCGCCACCAAAA 59.826 50.000 0.00 0.00 0.00 2.44
448 449 0.173708 TTCAACACCGCCACCAAAAC 59.826 50.000 0.00 0.00 0.00 2.43
449 450 1.587613 CAACACCGCCACCAAAACG 60.588 57.895 0.00 0.00 0.00 3.60
456 457 3.039134 CCACCAAAACGGCAGGAC 58.961 61.111 0.00 0.00 39.03 3.85
457 458 1.826054 CCACCAAAACGGCAGGACA 60.826 57.895 0.00 0.00 39.03 4.02
458 459 1.388065 CCACCAAAACGGCAGGACAA 61.388 55.000 0.00 0.00 39.03 3.18
459 460 0.248866 CACCAAAACGGCAGGACAAC 60.249 55.000 0.00 0.00 39.03 3.32
460 461 0.395173 ACCAAAACGGCAGGACAACT 60.395 50.000 0.00 0.00 39.03 3.16
469 470 2.915659 AGGACAACTGACCCGCGA 60.916 61.111 8.23 0.00 0.00 5.87
470 471 2.264794 GGACAACTGACCCGCGAT 59.735 61.111 8.23 0.00 0.00 4.58
471 472 1.810030 GGACAACTGACCCGCGATC 60.810 63.158 8.23 5.37 0.00 3.69
472 473 1.080093 GACAACTGACCCGCGATCA 60.080 57.895 8.23 10.52 0.00 2.92
473 474 0.669318 GACAACTGACCCGCGATCAA 60.669 55.000 8.23 0.00 0.00 2.57
474 475 0.036388 ACAACTGACCCGCGATCAAT 60.036 50.000 8.23 0.00 0.00 2.57
475 476 1.086696 CAACTGACCCGCGATCAATT 58.913 50.000 8.23 4.20 0.00 2.32
476 477 1.468520 CAACTGACCCGCGATCAATTT 59.531 47.619 8.23 4.47 0.00 1.82
477 478 1.086696 ACTGACCCGCGATCAATTTG 58.913 50.000 8.23 1.72 0.00 2.32
478 479 0.248215 CTGACCCGCGATCAATTTGC 60.248 55.000 8.23 0.00 0.00 3.68
479 480 1.064134 GACCCGCGATCAATTTGCC 59.936 57.895 8.23 0.00 0.00 4.52
480 481 1.653094 GACCCGCGATCAATTTGCCA 61.653 55.000 8.23 0.00 0.00 4.92
481 482 1.226660 CCCGCGATCAATTTGCCAC 60.227 57.895 8.23 0.00 0.00 5.01
482 483 1.656818 CCCGCGATCAATTTGCCACT 61.657 55.000 8.23 0.00 0.00 4.00
483 484 0.171007 CCGCGATCAATTTGCCACTT 59.829 50.000 8.23 0.00 0.00 3.16
484 485 1.538276 CGCGATCAATTTGCCACTTC 58.462 50.000 0.00 0.00 0.00 3.01
485 486 1.795162 CGCGATCAATTTGCCACTTCC 60.795 52.381 0.00 0.00 0.00 3.46
486 487 1.469767 GCGATCAATTTGCCACTTCCC 60.470 52.381 0.00 0.00 0.00 3.97
487 488 1.818060 CGATCAATTTGCCACTTCCCA 59.182 47.619 0.00 0.00 0.00 4.37
488 489 2.159338 CGATCAATTTGCCACTTCCCAG 60.159 50.000 0.00 0.00 0.00 4.45
489 490 2.673775 TCAATTTGCCACTTCCCAGA 57.326 45.000 0.00 0.00 0.00 3.86
490 491 2.238521 TCAATTTGCCACTTCCCAGAC 58.761 47.619 0.00 0.00 0.00 3.51
491 492 1.273327 CAATTTGCCACTTCCCAGACC 59.727 52.381 0.00 0.00 0.00 3.85
492 493 0.482446 ATTTGCCACTTCCCAGACCA 59.518 50.000 0.00 0.00 0.00 4.02
493 494 0.178992 TTTGCCACTTCCCAGACCAG 60.179 55.000 0.00 0.00 0.00 4.00
494 495 2.067932 TTGCCACTTCCCAGACCAGG 62.068 60.000 0.00 0.00 0.00 4.45
495 496 2.352805 CCACTTCCCAGACCAGGC 59.647 66.667 0.00 0.00 0.00 4.85
496 497 2.046892 CACTTCCCAGACCAGGCG 60.047 66.667 0.00 0.00 0.00 5.52
497 498 4.021925 ACTTCCCAGACCAGGCGC 62.022 66.667 0.00 0.00 0.00 6.53
503 504 4.803426 CAGACCAGGCGCGTCCTC 62.803 72.222 17.47 5.88 45.52 3.71
564 565 3.151022 CCGCTCCTCCTCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
565 566 2.363018 CGCTCCTCCTCCTCCACA 60.363 66.667 0.00 0.00 0.00 4.17
566 567 1.760086 CGCTCCTCCTCCTCCACAT 60.760 63.158 0.00 0.00 0.00 3.21
567 568 1.743321 CGCTCCTCCTCCTCCACATC 61.743 65.000 0.00 0.00 0.00 3.06
568 569 1.406860 GCTCCTCCTCCTCCACATCC 61.407 65.000 0.00 0.00 0.00 3.51
569 570 0.031716 CTCCTCCTCCTCCACATCCA 60.032 60.000 0.00 0.00 0.00 3.41
570 571 0.325671 TCCTCCTCCTCCACATCCAC 60.326 60.000 0.00 0.00 0.00 4.02
571 572 1.341156 CCTCCTCCTCCACATCCACC 61.341 65.000 0.00 0.00 0.00 4.61
572 573 0.326048 CTCCTCCTCCACATCCACCT 60.326 60.000 0.00 0.00 0.00 4.00
573 574 1.015609 TCCTCCTCCACATCCACCTA 58.984 55.000 0.00 0.00 0.00 3.08
574 575 1.123928 CCTCCTCCACATCCACCTAC 58.876 60.000 0.00 0.00 0.00 3.18
575 576 1.123928 CTCCTCCACATCCACCTACC 58.876 60.000 0.00 0.00 0.00 3.18
576 577 0.326238 TCCTCCACATCCACCTACCC 60.326 60.000 0.00 0.00 0.00 3.69
577 578 1.686325 CCTCCACATCCACCTACCCG 61.686 65.000 0.00 0.00 0.00 5.28
578 579 2.189521 CCACATCCACCTACCCGC 59.810 66.667 0.00 0.00 0.00 6.13
579 580 2.665089 CCACATCCACCTACCCGCA 61.665 63.158 0.00 0.00 0.00 5.69
580 581 1.298340 CACATCCACCTACCCGCAA 59.702 57.895 0.00 0.00 0.00 4.85
581 582 1.024579 CACATCCACCTACCCGCAAC 61.025 60.000 0.00 0.00 0.00 4.17
582 583 1.451387 CATCCACCTACCCGCAACC 60.451 63.158 0.00 0.00 0.00 3.77
583 584 3.026431 ATCCACCTACCCGCAACCG 62.026 63.158 0.00 0.00 0.00 4.44
598 599 4.335647 CCGCCAGGTGTCCAGCTT 62.336 66.667 0.00 0.00 36.98 3.74
599 600 2.743928 CGCCAGGTGTCCAGCTTC 60.744 66.667 0.00 0.00 36.98 3.86
600 601 2.360475 GCCAGGTGTCCAGCTTCC 60.360 66.667 0.00 0.00 36.98 3.46
601 602 2.046892 CCAGGTGTCCAGCTTCCG 60.047 66.667 0.00 0.00 36.98 4.30
602 603 2.743928 CAGGTGTCCAGCTTCCGC 60.744 66.667 0.00 0.00 36.98 5.54
603 604 4.021925 AGGTGTCCAGCTTCCGCC 62.022 66.667 0.00 0.00 35.28 6.13
607 608 3.706373 GTCCAGCTTCCGCCTCCA 61.706 66.667 0.00 0.00 36.60 3.86
627 628 0.174617 CCTCCGCAACTCCTTCTCTC 59.825 60.000 0.00 0.00 0.00 3.20
633 634 0.615850 CAACTCCTTCTCTCCCACCC 59.384 60.000 0.00 0.00 0.00 4.61
648 649 4.127744 CCCCGCCCATGTGACCAT 62.128 66.667 0.00 0.00 0.00 3.55
649 650 2.829914 CCCGCCCATGTGACCATG 60.830 66.667 0.00 0.00 46.65 3.66
650 651 2.045045 CCGCCCATGTGACCATGT 60.045 61.111 2.38 0.00 45.83 3.21
651 652 1.678635 CCGCCCATGTGACCATGTT 60.679 57.895 2.38 0.00 45.83 2.71
729 730 2.520741 CCGCCTCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
734 735 0.998945 CCTCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
735 736 0.478507 CTCTCCTCCTCCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
741 742 0.350904 TCCTCCTCCTCCTCCTCCTA 59.649 60.000 0.00 0.00 0.00 2.94
795 796 3.458163 GTCATGGTCTCCCCGCGA 61.458 66.667 8.23 0.00 35.15 5.87
865 866 1.822186 GGACGCACACCACCTGTTT 60.822 57.895 0.00 0.00 0.00 2.83
1023 1032 1.748500 GAGAAGAAGCAGGCAGGCC 60.749 63.158 0.97 0.97 0.00 5.19
1266 1282 5.534278 TGTGCCAAATGAGTTCTCATACAAA 59.466 36.000 14.50 5.24 0.00 2.83
1282 1298 5.470098 TCATACAAAACAGTTCTGAAGAGCC 59.530 40.000 6.83 0.00 0.00 4.70
1530 1563 1.414181 GCTATGGACAAGGCTGAGCTA 59.586 52.381 3.72 0.00 0.00 3.32
1694 1727 5.579904 CAGATACTGTCACTTGGAACTCATG 59.420 44.000 0.00 0.00 0.00 3.07
1727 1760 0.885879 TGCAAGCATGGAAGAAGCAG 59.114 50.000 0.00 0.00 0.00 4.24
1943 1976 2.848694 AGTGTGGGATGATGGATGAAGT 59.151 45.455 0.00 0.00 0.00 3.01
2524 2563 5.360591 AGAGAGTTAAACCTGACACTGTTG 58.639 41.667 0.00 0.00 0.00 3.33
2564 2603 0.752658 GGGTTATTTCATGCTGGGGC 59.247 55.000 0.00 0.00 39.26 5.80
2653 2692 6.042552 CACATACAGGATAGTTCTTGGAGGAT 59.957 42.308 0.00 0.00 33.43 3.24
2994 3033 4.119155 TGGAAAAGGGGGAGATAGTCAAT 58.881 43.478 0.00 0.00 0.00 2.57
3048 3087 6.419980 AAGATCATCTCTTTTGAAGCTTCG 57.580 37.500 21.11 7.32 41.60 3.79
3203 3242 2.082231 GTTCGGAGCTCCCTTTTAACC 58.918 52.381 27.20 0.00 0.00 2.85
3241 3280 0.036388 TTCCATCCACTCGCCAAGAC 60.036 55.000 0.00 0.00 0.00 3.01
3244 3283 3.019003 ATCCACTCGCCAAGACCGG 62.019 63.158 0.00 0.00 0.00 5.28
3264 3303 0.908910 TCTGGGTGATAATGCCGTGT 59.091 50.000 0.00 0.00 0.00 4.49
3319 3360 2.878406 GGCGTGTATGCTATGGTCATTT 59.122 45.455 0.00 0.00 34.52 2.32
3320 3361 3.315191 GGCGTGTATGCTATGGTCATTTT 59.685 43.478 0.00 0.00 34.52 1.82
3330 3371 4.156008 GCTATGGTCATTTTGTTCCGTCTT 59.844 41.667 0.00 0.00 0.00 3.01
3335 3376 3.914364 GTCATTTTGTTCCGTCTTCATGC 59.086 43.478 0.00 0.00 0.00 4.06
3402 3447 8.038351 GCTAATGGTAAAAATATTGTGGGTGTT 58.962 33.333 0.00 0.00 0.00 3.32
3403 3448 9.581099 CTAATGGTAAAAATATTGTGGGTGTTC 57.419 33.333 0.00 0.00 0.00 3.18
3404 3449 6.015027 TGGTAAAAATATTGTGGGTGTTCG 57.985 37.500 0.00 0.00 0.00 3.95
3405 3450 5.047943 TGGTAAAAATATTGTGGGTGTTCGG 60.048 40.000 0.00 0.00 0.00 4.30
3406 3451 4.529109 AAAAATATTGTGGGTGTTCGGG 57.471 40.909 0.00 0.00 0.00 5.14
3407 3452 2.137810 AATATTGTGGGTGTTCGGGG 57.862 50.000 0.00 0.00 0.00 5.73
3408 3453 0.996583 ATATTGTGGGTGTTCGGGGT 59.003 50.000 0.00 0.00 0.00 4.95
3409 3454 0.325602 TATTGTGGGTGTTCGGGGTC 59.674 55.000 0.00 0.00 0.00 4.46
3410 3455 1.710996 ATTGTGGGTGTTCGGGGTCA 61.711 55.000 0.00 0.00 0.00 4.02
3411 3456 1.710996 TTGTGGGTGTTCGGGGTCAT 61.711 55.000 0.00 0.00 0.00 3.06
3412 3457 0.836830 TGTGGGTGTTCGGGGTCATA 60.837 55.000 0.00 0.00 0.00 2.15
3413 3458 0.544697 GTGGGTGTTCGGGGTCATAT 59.455 55.000 0.00 0.00 0.00 1.78
3445 3490 4.087182 TCTTGTCCCAGAGTTTATCGAGT 58.913 43.478 0.00 0.00 0.00 4.18
3454 3499 5.105716 CCAGAGTTTATCGAGTTCTTCCTCA 60.106 44.000 0.00 0.00 0.00 3.86
3460 3505 2.248248 TCGAGTTCTTCCTCATGGTGT 58.752 47.619 0.00 0.00 34.23 4.16
3513 3559 2.243810 TGGTATTGTTTGGAACCCAGC 58.756 47.619 0.00 0.00 33.81 4.85
3514 3560 2.158385 TGGTATTGTTTGGAACCCAGCT 60.158 45.455 0.00 0.00 33.81 4.24
3515 3561 2.231235 GGTATTGTTTGGAACCCAGCTG 59.769 50.000 6.78 6.78 33.81 4.24
3516 3562 0.681175 ATTGTTTGGAACCCAGCTGC 59.319 50.000 8.66 0.00 33.81 5.25
3517 3563 1.733402 TTGTTTGGAACCCAGCTGCG 61.733 55.000 8.66 1.40 33.81 5.18
3518 3564 2.597217 TTTGGAACCCAGCTGCGG 60.597 61.111 8.66 13.80 33.81 5.69
3538 3591 0.740737 CCTGCGGATGGTTTCCATTC 59.259 55.000 0.00 0.00 45.26 2.67
3576 3629 2.719531 TGTGCAGTTCCAAGGTGTTA 57.280 45.000 0.00 0.00 0.00 2.41
3623 3679 6.494491 TGTTTCTCAATCATTTGTCTTGGGAT 59.506 34.615 0.00 0.00 29.94 3.85
3633 3689 4.870123 TTGTCTTGGGATTTGAATGTGG 57.130 40.909 0.00 0.00 0.00 4.17
3636 3692 2.827322 TCTTGGGATTTGAATGTGGCTG 59.173 45.455 0.00 0.00 0.00 4.85
3643 3699 2.636647 TTGAATGTGGCTGTGTCAGA 57.363 45.000 0.66 0.00 32.44 3.27
3647 3703 2.865119 ATGTGGCTGTGTCAGATTCA 57.135 45.000 0.66 0.00 32.44 2.57
3662 3718 7.288317 GTCAGATTCATGACTTGTTAGAGTG 57.712 40.000 0.00 0.00 45.03 3.51
3666 3722 6.593382 AGATTCATGACTTGTTAGAGTGAAGC 59.407 38.462 0.00 0.00 32.13 3.86
3733 3790 3.370209 CCTGAAATGCTGTGAGATCTGGA 60.370 47.826 0.00 0.00 0.00 3.86
3769 3826 4.588106 TGAGGATGTTGGAATTGAAAAGCA 59.412 37.500 0.00 0.00 0.00 3.91
4083 4146 4.038642 TGCAACCAGGTAAATTTCTTGTCC 59.961 41.667 0.00 0.00 0.00 4.02
4086 4149 3.181437 ACCAGGTAAATTTCTTGTCCGGT 60.181 43.478 0.00 1.73 0.00 5.28
4112 4175 6.129194 GCTTGTACCGCTTTTAAAATGTGAAG 60.129 38.462 0.09 7.49 0.00 3.02
4150 4213 5.280011 GGACGATATCTTGGGGTGTTGATAT 60.280 44.000 0.34 0.00 35.56 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.383436 AGGTTCATCTCTCTCTGATCATTTGA 59.617 38.462 0.00 0.00 0.00 2.69
11 12 6.408320 CCAGGTTCATCTCTCTCTGATCATTT 60.408 42.308 0.00 0.00 0.00 2.32
12 13 5.070714 CCAGGTTCATCTCTCTCTGATCATT 59.929 44.000 0.00 0.00 0.00 2.57
13 14 4.589798 CCAGGTTCATCTCTCTCTGATCAT 59.410 45.833 0.00 0.00 0.00 2.45
15 16 3.321682 CCCAGGTTCATCTCTCTCTGATC 59.678 52.174 0.00 0.00 0.00 2.92
16 17 3.307506 CCCAGGTTCATCTCTCTCTGAT 58.692 50.000 0.00 0.00 0.00 2.90
17 18 2.744760 CCCAGGTTCATCTCTCTCTGA 58.255 52.381 0.00 0.00 0.00 3.27
19 20 1.273495 TGCCCAGGTTCATCTCTCTCT 60.273 52.381 0.00 0.00 0.00 3.10
21 22 0.908198 GTGCCCAGGTTCATCTCTCT 59.092 55.000 0.00 0.00 0.00 3.10
22 23 0.107459 GGTGCCCAGGTTCATCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
23 24 0.842030 TGGTGCCCAGGTTCATCTCT 60.842 55.000 0.00 0.00 0.00 3.10
24 25 1.685224 TGGTGCCCAGGTTCATCTC 59.315 57.895 0.00 0.00 0.00 2.75
25 26 3.920817 TGGTGCCCAGGTTCATCT 58.079 55.556 0.00 0.00 0.00 2.90
38 39 4.641645 TGCTGGGTTCGGCTGGTG 62.642 66.667 0.00 0.00 45.25 4.17
39 40 4.335647 CTGCTGGGTTCGGCTGGT 62.336 66.667 0.00 0.00 45.25 4.00
42 43 4.711949 CTGCTGCTGGGTTCGGCT 62.712 66.667 0.00 0.00 45.25 5.52
53 54 4.385405 ACGTCCAGGAGCTGCTGC 62.385 66.667 28.30 13.74 40.05 5.25
54 55 2.433838 CACGTCCAGGAGCTGCTG 60.434 66.667 26.95 26.95 0.00 4.41
55 56 3.699894 CCACGTCCAGGAGCTGCT 61.700 66.667 0.00 0.00 0.00 4.24
56 57 4.767255 CCCACGTCCAGGAGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
57 58 2.997315 TCCCACGTCCAGGAGCTG 60.997 66.667 0.00 0.00 0.00 4.24
58 59 2.681778 CTCCCACGTCCAGGAGCT 60.682 66.667 11.72 0.00 43.11 4.09
61 62 2.037367 CCTCTCCCACGTCCAGGA 59.963 66.667 0.00 0.00 0.00 3.86
62 63 2.037367 TCCTCTCCCACGTCCAGG 59.963 66.667 0.00 0.00 0.00 4.45
63 64 2.055042 CCTCCTCTCCCACGTCCAG 61.055 68.421 0.00 0.00 0.00 3.86
64 65 2.037367 CCTCCTCTCCCACGTCCA 59.963 66.667 0.00 0.00 0.00 4.02
65 66 1.755008 CTCCTCCTCTCCCACGTCC 60.755 68.421 0.00 0.00 0.00 4.79
66 67 2.419739 GCTCCTCCTCTCCCACGTC 61.420 68.421 0.00 0.00 0.00 4.34
67 68 2.363147 GCTCCTCCTCTCCCACGT 60.363 66.667 0.00 0.00 0.00 4.49
68 69 2.363018 TGCTCCTCCTCTCCCACG 60.363 66.667 0.00 0.00 0.00 4.94
69 70 2.363172 GGTGCTCCTCCTCTCCCAC 61.363 68.421 0.00 0.00 0.00 4.61
70 71 2.039624 GGTGCTCCTCCTCTCCCA 59.960 66.667 0.00 0.00 0.00 4.37
71 72 2.063378 CAGGTGCTCCTCCTCTCCC 61.063 68.421 3.81 0.00 43.07 4.30
72 73 2.730524 GCAGGTGCTCCTCCTCTCC 61.731 68.421 3.81 0.00 43.07 3.71
73 74 2.899505 GCAGGTGCTCCTCCTCTC 59.100 66.667 3.81 0.00 43.07 3.20
74 75 3.073735 CGCAGGTGCTCCTCCTCT 61.074 66.667 3.81 0.00 43.07 3.69
75 76 4.828925 GCGCAGGTGCTCCTCCTC 62.829 72.222 3.81 0.00 43.07 3.71
81 82 4.479993 ATCCAGGCGCAGGTGCTC 62.480 66.667 10.83 0.00 39.32 4.26
82 83 4.790962 CATCCAGGCGCAGGTGCT 62.791 66.667 10.83 0.00 39.32 4.40
93 94 4.100084 TCCGGCCACTGCATCCAG 62.100 66.667 2.24 0.00 44.80 3.86
94 95 4.100084 CTCCGGCCACTGCATCCA 62.100 66.667 2.24 0.00 40.13 3.41
95 96 4.864334 CCTCCGGCCACTGCATCC 62.864 72.222 2.24 0.00 40.13 3.51
96 97 4.101448 ACCTCCGGCCACTGCATC 62.101 66.667 2.24 0.00 40.13 3.91
97 98 4.415150 CACCTCCGGCCACTGCAT 62.415 66.667 2.24 0.00 40.13 3.96
101 102 4.326227 TACCCACCTCCGGCCACT 62.326 66.667 2.24 0.00 0.00 4.00
102 103 4.091939 GTACCCACCTCCGGCCAC 62.092 72.222 2.24 0.00 0.00 5.01
106 107 3.145551 CTCCGTACCCACCTCCGG 61.146 72.222 0.00 0.00 41.75 5.14
107 108 3.145551 CCTCCGTACCCACCTCCG 61.146 72.222 0.00 0.00 0.00 4.63
108 109 2.038490 ACCTCCGTACCCACCTCC 59.962 66.667 0.00 0.00 0.00 4.30
109 110 2.356780 CCACCTCCGTACCCACCTC 61.357 68.421 0.00 0.00 0.00 3.85
110 111 2.284405 CCACCTCCGTACCCACCT 60.284 66.667 0.00 0.00 0.00 4.00
111 112 2.284112 TCCACCTCCGTACCCACC 60.284 66.667 0.00 0.00 0.00 4.61
112 113 0.686769 ATCTCCACCTCCGTACCCAC 60.687 60.000 0.00 0.00 0.00 4.61
113 114 0.686441 CATCTCCACCTCCGTACCCA 60.686 60.000 0.00 0.00 0.00 4.51
114 115 1.400530 CCATCTCCACCTCCGTACCC 61.401 65.000 0.00 0.00 0.00 3.69
115 116 0.396695 TCCATCTCCACCTCCGTACC 60.397 60.000 0.00 0.00 0.00 3.34
116 117 1.033574 CTCCATCTCCACCTCCGTAC 58.966 60.000 0.00 0.00 0.00 3.67
117 118 0.106167 CCTCCATCTCCACCTCCGTA 60.106 60.000 0.00 0.00 0.00 4.02
118 119 1.381872 CCTCCATCTCCACCTCCGT 60.382 63.158 0.00 0.00 0.00 4.69
119 120 0.687757 TTCCTCCATCTCCACCTCCG 60.688 60.000 0.00 0.00 0.00 4.63
120 121 0.833949 GTTCCTCCATCTCCACCTCC 59.166 60.000 0.00 0.00 0.00 4.30
121 122 1.484240 CTGTTCCTCCATCTCCACCTC 59.516 57.143 0.00 0.00 0.00 3.85
122 123 1.577736 CTGTTCCTCCATCTCCACCT 58.422 55.000 0.00 0.00 0.00 4.00
123 124 0.107459 GCTGTTCCTCCATCTCCACC 60.107 60.000 0.00 0.00 0.00 4.61
124 125 0.107459 GGCTGTTCCTCCATCTCCAC 60.107 60.000 0.00 0.00 0.00 4.02
125 126 0.252881 AGGCTGTTCCTCCATCTCCA 60.253 55.000 0.00 0.00 43.20 3.86
126 127 0.179936 CAGGCTGTTCCTCCATCTCC 59.820 60.000 6.28 0.00 45.52 3.71
127 128 0.908198 ACAGGCTGTTCCTCCATCTC 59.092 55.000 15.88 0.00 45.52 2.75
128 129 0.617413 CACAGGCTGTTCCTCCATCT 59.383 55.000 19.43 0.00 45.52 2.90
129 130 1.028868 GCACAGGCTGTTCCTCCATC 61.029 60.000 19.43 0.00 45.52 3.51
130 131 1.001641 GCACAGGCTGTTCCTCCAT 60.002 57.895 19.43 0.00 45.52 3.41
131 132 2.431683 GCACAGGCTGTTCCTCCA 59.568 61.111 19.43 0.00 45.52 3.86
142 143 4.767255 GGTGGAGGCGAGCACAGG 62.767 72.222 0.00 0.00 0.00 4.00
143 144 3.699894 AGGTGGAGGCGAGCACAG 61.700 66.667 0.00 0.00 0.00 3.66
144 145 4.007644 CAGGTGGAGGCGAGCACA 62.008 66.667 0.00 0.00 0.00 4.57
145 146 4.767255 CCAGGTGGAGGCGAGCAC 62.767 72.222 0.00 0.00 37.39 4.40
162 163 4.803426 CTCCTCGTGACCTGCGCC 62.803 72.222 4.18 0.00 0.00 6.53
164 165 4.803426 GGCTCCTCGTGACCTGCG 62.803 72.222 0.00 0.00 0.00 5.18
165 166 4.459089 GGGCTCCTCGTGACCTGC 62.459 72.222 0.00 0.00 0.00 4.85
166 167 3.775654 GGGGCTCCTCGTGACCTG 61.776 72.222 0.00 0.00 0.00 4.00
167 168 3.999285 AGGGGCTCCTCGTGACCT 61.999 66.667 0.00 0.00 39.80 3.85
168 169 3.775654 CAGGGGCTCCTCGTGACC 61.776 72.222 0.00 0.00 42.67 4.02
169 170 2.997897 ACAGGGGCTCCTCGTGAC 60.998 66.667 0.00 0.00 42.67 3.67
170 171 2.997315 CACAGGGGCTCCTCGTGA 60.997 66.667 23.33 0.00 42.67 4.35
171 172 3.314331 ACACAGGGGCTCCTCGTG 61.314 66.667 24.98 24.98 42.67 4.35
172 173 3.314331 CACACAGGGGCTCCTCGT 61.314 66.667 0.00 0.00 42.67 4.18
173 174 4.087892 CCACACAGGGGCTCCTCG 62.088 72.222 0.00 0.00 42.67 4.63
202 203 1.153469 GCTGGAGTAGAGCTGGTGC 60.153 63.158 0.00 0.00 40.05 5.01
203 204 1.140589 CGCTGGAGTAGAGCTGGTG 59.859 63.158 0.00 0.00 34.03 4.17
204 205 2.055042 CCGCTGGAGTAGAGCTGGT 61.055 63.158 0.00 0.00 34.03 4.00
205 206 2.811101 CCGCTGGAGTAGAGCTGG 59.189 66.667 0.00 0.00 34.03 4.85
206 207 2.105930 GCCGCTGGAGTAGAGCTG 59.894 66.667 0.00 0.00 34.03 4.24
207 208 3.522731 CGCCGCTGGAGTAGAGCT 61.523 66.667 0.00 0.00 34.03 4.09
208 209 4.577246 CCGCCGCTGGAGTAGAGC 62.577 72.222 0.00 0.00 0.00 4.09
209 210 4.577246 GCCGCCGCTGGAGTAGAG 62.577 72.222 5.57 0.00 0.00 2.43
211 212 4.880537 CTGCCGCCGCTGGAGTAG 62.881 72.222 5.57 0.00 35.36 2.57
240 241 3.866582 CATCTCCACCTCCGCCCC 61.867 72.222 0.00 0.00 0.00 5.80
241 242 3.866582 CCATCTCCACCTCCGCCC 61.867 72.222 0.00 0.00 0.00 6.13
242 243 2.764128 TCCATCTCCACCTCCGCC 60.764 66.667 0.00 0.00 0.00 6.13
243 244 2.801631 CCTCCATCTCCACCTCCGC 61.802 68.421 0.00 0.00 0.00 5.54
244 245 2.136878 CCCTCCATCTCCACCTCCG 61.137 68.421 0.00 0.00 0.00 4.63
245 246 2.447714 GCCCTCCATCTCCACCTCC 61.448 68.421 0.00 0.00 0.00 4.30
246 247 2.801631 CGCCCTCCATCTCCACCTC 61.802 68.421 0.00 0.00 0.00 3.85
247 248 2.765807 CGCCCTCCATCTCCACCT 60.766 66.667 0.00 0.00 0.00 4.00
248 249 3.866582 CCGCCCTCCATCTCCACC 61.867 72.222 0.00 0.00 0.00 4.61
249 250 2.764128 TCCGCCCTCCATCTCCAC 60.764 66.667 0.00 0.00 0.00 4.02
250 251 2.444706 CTCCGCCCTCCATCTCCA 60.445 66.667 0.00 0.00 0.00 3.86
251 252 3.237741 CCTCCGCCCTCCATCTCC 61.238 72.222 0.00 0.00 0.00 3.71
252 253 2.444895 ACCTCCGCCCTCCATCTC 60.445 66.667 0.00 0.00 0.00 2.75
253 254 2.765807 CACCTCCGCCCTCCATCT 60.766 66.667 0.00 0.00 0.00 2.90
254 255 3.866582 CCACCTCCGCCCTCCATC 61.867 72.222 0.00 0.00 0.00 3.51
255 256 4.414956 TCCACCTCCGCCCTCCAT 62.415 66.667 0.00 0.00 0.00 3.41
258 259 3.083997 ATGTCCACCTCCGCCCTC 61.084 66.667 0.00 0.00 0.00 4.30
259 260 3.402681 CATGTCCACCTCCGCCCT 61.403 66.667 0.00 0.00 0.00 5.19
260 261 4.489771 CCATGTCCACCTCCGCCC 62.490 72.222 0.00 0.00 0.00 6.13
261 262 3.391665 CTCCATGTCCACCTCCGCC 62.392 68.421 0.00 0.00 0.00 6.13
262 263 2.187946 CTCCATGTCCACCTCCGC 59.812 66.667 0.00 0.00 0.00 5.54
263 264 1.990060 ACCTCCATGTCCACCTCCG 60.990 63.158 0.00 0.00 0.00 4.63
264 265 1.604378 CACCTCCATGTCCACCTCC 59.396 63.158 0.00 0.00 0.00 4.30
265 266 0.909610 TCCACCTCCATGTCCACCTC 60.910 60.000 0.00 0.00 0.00 3.85
266 267 0.911525 CTCCACCTCCATGTCCACCT 60.912 60.000 0.00 0.00 0.00 4.00
267 268 1.604378 CTCCACCTCCATGTCCACC 59.396 63.158 0.00 0.00 0.00 4.61
268 269 1.604378 CCTCCACCTCCATGTCCAC 59.396 63.158 0.00 0.00 0.00 4.02
269 270 1.616327 CCCTCCACCTCCATGTCCA 60.616 63.158 0.00 0.00 0.00 4.02
270 271 1.616628 ACCCTCCACCTCCATGTCC 60.617 63.158 0.00 0.00 0.00 4.02
271 272 1.604378 CACCCTCCACCTCCATGTC 59.396 63.158 0.00 0.00 0.00 3.06
272 273 1.925455 CCACCCTCCACCTCCATGT 60.925 63.158 0.00 0.00 0.00 3.21
273 274 1.616327 TCCACCCTCCACCTCCATG 60.616 63.158 0.00 0.00 0.00 3.66
274 275 1.307343 CTCCACCCTCCACCTCCAT 60.307 63.158 0.00 0.00 0.00 3.41
275 276 2.122729 CTCCACCCTCCACCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
276 277 2.689034 CCTCCACCCTCCACCTCC 60.689 72.222 0.00 0.00 0.00 4.30
277 278 2.122954 ACCTCCACCCTCCACCTC 59.877 66.667 0.00 0.00 0.00 3.85
278 279 2.203998 CACCTCCACCCTCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
279 280 3.330720 CCACCTCCACCCTCCACC 61.331 72.222 0.00 0.00 0.00 4.61
280 281 2.203938 TCCACCTCCACCCTCCAC 60.204 66.667 0.00 0.00 0.00 4.02
281 282 2.122729 CTCCACCTCCACCCTCCA 59.877 66.667 0.00 0.00 0.00 3.86
282 283 2.689034 CCTCCACCTCCACCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
283 284 2.689034 CCCTCCACCTCCACCCTC 60.689 72.222 0.00 0.00 0.00 4.30
287 288 2.804828 CTTTCGCCCTCCACCTCCAC 62.805 65.000 0.00 0.00 0.00 4.02
288 289 2.528127 TTTCGCCCTCCACCTCCA 60.528 61.111 0.00 0.00 0.00 3.86
289 290 2.269241 CTTTCGCCCTCCACCTCC 59.731 66.667 0.00 0.00 0.00 4.30
290 291 2.436824 GCTTTCGCCCTCCACCTC 60.437 66.667 0.00 0.00 0.00 3.85
291 292 4.394712 CGCTTTCGCCCTCCACCT 62.395 66.667 0.00 0.00 0.00 4.00
293 294 4.388499 TCCGCTTTCGCCCTCCAC 62.388 66.667 0.00 0.00 0.00 4.02
294 295 4.082523 CTCCGCTTTCGCCCTCCA 62.083 66.667 0.00 0.00 0.00 3.86
295 296 4.840005 CCTCCGCTTTCGCCCTCC 62.840 72.222 0.00 0.00 0.00 4.30
296 297 4.083862 ACCTCCGCTTTCGCCCTC 62.084 66.667 0.00 0.00 0.00 4.30
297 298 4.394712 CACCTCCGCTTTCGCCCT 62.395 66.667 0.00 0.00 0.00 5.19
299 300 4.388499 TCCACCTCCGCTTTCGCC 62.388 66.667 0.00 0.00 0.00 5.54
300 301 2.815647 CTCCACCTCCGCTTTCGC 60.816 66.667 0.00 0.00 0.00 4.70
301 302 2.125512 CCTCCACCTCCGCTTTCG 60.126 66.667 0.00 0.00 0.00 3.46
302 303 2.436824 GCCTCCACCTCCGCTTTC 60.437 66.667 0.00 0.00 0.00 2.62
303 304 4.394712 CGCCTCCACCTCCGCTTT 62.395 66.667 0.00 0.00 0.00 3.51
309 310 3.775654 CACCTCCGCCTCCACCTC 61.776 72.222 0.00 0.00 0.00 3.85
312 313 3.316573 CTTCCACCTCCGCCTCCAC 62.317 68.421 0.00 0.00 0.00 4.02
313 314 3.003173 CTTCCACCTCCGCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
314 315 3.003763 ACTTCCACCTCCGCCTCC 61.004 66.667 0.00 0.00 0.00 4.30
315 316 2.579738 GACTTCCACCTCCGCCTC 59.420 66.667 0.00 0.00 0.00 4.70
316 317 3.382832 CGACTTCCACCTCCGCCT 61.383 66.667 0.00 0.00 0.00 5.52
317 318 2.630592 GATCGACTTCCACCTCCGCC 62.631 65.000 0.00 0.00 0.00 6.13
318 319 1.227002 GATCGACTTCCACCTCCGC 60.227 63.158 0.00 0.00 0.00 5.54
319 320 1.064296 CGATCGACTTCCACCTCCG 59.936 63.158 10.26 0.00 0.00 4.63
320 321 1.001158 GATCGATCGACTTCCACCTCC 60.001 57.143 22.06 0.00 0.00 4.30
321 322 2.409152 GATCGATCGACTTCCACCTC 57.591 55.000 22.06 7.68 0.00 3.85
330 331 9.305248 TCAAAATTTGAATCCCGATCGATCGAC 62.305 40.741 41.18 26.53 43.95 4.20
331 332 7.397890 TCAAAATTTGAATCCCGATCGATCGA 61.398 38.462 41.18 26.81 43.95 3.59
332 333 5.277297 TCAAAATTTGAATCCCGATCGATCG 60.277 40.000 35.03 35.03 42.33 3.69
333 334 6.060028 TCAAAATTTGAATCCCGATCGATC 57.940 37.500 18.66 15.68 36.59 3.69
334 335 6.449635 TTCAAAATTTGAATCCCGATCGAT 57.550 33.333 18.66 0.00 44.21 3.59
335 336 5.888691 TTCAAAATTTGAATCCCGATCGA 57.111 34.783 18.66 0.00 44.21 3.59
345 346 6.126940 TGTTGGTGATCCCTTCAAAATTTGAA 60.127 34.615 18.68 18.68 46.68 2.69
346 347 5.365025 TGTTGGTGATCCCTTCAAAATTTGA 59.635 36.000 4.03 4.03 35.70 2.69
347 348 5.466393 GTGTTGGTGATCCCTTCAAAATTTG 59.534 40.000 0.00 0.00 35.70 2.32
348 349 5.454613 GGTGTTGGTGATCCCTTCAAAATTT 60.455 40.000 0.00 0.00 35.70 1.82
349 350 4.040339 GGTGTTGGTGATCCCTTCAAAATT 59.960 41.667 0.00 0.00 35.70 1.82
350 351 3.578282 GGTGTTGGTGATCCCTTCAAAAT 59.422 43.478 0.00 0.00 35.70 1.82
351 352 2.962421 GGTGTTGGTGATCCCTTCAAAA 59.038 45.455 0.00 0.00 35.70 2.44
352 353 2.593026 GGTGTTGGTGATCCCTTCAAA 58.407 47.619 0.00 0.00 35.70 2.69
353 354 1.544537 CGGTGTTGGTGATCCCTTCAA 60.545 52.381 0.00 0.00 35.70 2.69
354 355 0.036164 CGGTGTTGGTGATCCCTTCA 59.964 55.000 0.00 0.00 0.00 3.02
355 356 1.305930 GCGGTGTTGGTGATCCCTTC 61.306 60.000 0.00 0.00 0.00 3.46
356 357 1.303317 GCGGTGTTGGTGATCCCTT 60.303 57.895 0.00 0.00 0.00 3.95
357 358 2.351276 GCGGTGTTGGTGATCCCT 59.649 61.111 0.00 0.00 0.00 4.20
358 359 2.750237 GGCGGTGTTGGTGATCCC 60.750 66.667 0.00 0.00 0.00 3.85
359 360 2.033448 TGGCGGTGTTGGTGATCC 59.967 61.111 0.00 0.00 0.00 3.36
360 361 1.599518 TGTGGCGGTGTTGGTGATC 60.600 57.895 0.00 0.00 0.00 2.92
361 362 1.896660 GTGTGGCGGTGTTGGTGAT 60.897 57.895 0.00 0.00 0.00 3.06
362 363 1.687297 TAGTGTGGCGGTGTTGGTGA 61.687 55.000 0.00 0.00 0.00 4.02
363 364 1.227704 TAGTGTGGCGGTGTTGGTG 60.228 57.895 0.00 0.00 0.00 4.17
364 365 1.070786 CTAGTGTGGCGGTGTTGGT 59.929 57.895 0.00 0.00 0.00 3.67
365 366 0.949105 GTCTAGTGTGGCGGTGTTGG 60.949 60.000 0.00 0.00 0.00 3.77
366 367 0.249699 TGTCTAGTGTGGCGGTGTTG 60.250 55.000 0.00 0.00 0.00 3.33
367 368 0.685097 ATGTCTAGTGTGGCGGTGTT 59.315 50.000 0.00 0.00 0.00 3.32
368 369 0.246635 GATGTCTAGTGTGGCGGTGT 59.753 55.000 0.00 0.00 0.00 4.16
369 370 0.802222 CGATGTCTAGTGTGGCGGTG 60.802 60.000 0.00 0.00 0.00 4.94
370 371 0.963856 TCGATGTCTAGTGTGGCGGT 60.964 55.000 0.00 0.00 0.00 5.68
371 372 0.385751 ATCGATGTCTAGTGTGGCGG 59.614 55.000 0.00 0.00 0.00 6.13
372 373 1.202302 ACATCGATGTCTAGTGTGGCG 60.202 52.381 25.18 0.00 35.87 5.69
373 374 2.586258 ACATCGATGTCTAGTGTGGC 57.414 50.000 25.18 0.00 35.87 5.01
383 384 5.301805 TCAGGTATACACATGACATCGATGT 59.698 40.000 30.37 30.37 40.37 3.06
384 385 5.772521 TCAGGTATACACATGACATCGATG 58.227 41.667 23.68 23.68 40.37 3.84
385 386 6.405278 TTCAGGTATACACATGACATCGAT 57.595 37.500 5.01 0.00 44.61 3.59
386 387 5.845391 TTCAGGTATACACATGACATCGA 57.155 39.130 5.01 0.00 44.61 3.59
387 388 6.902224 TTTTCAGGTATACACATGACATCG 57.098 37.500 5.01 0.00 44.61 3.84
388 389 8.268850 AGTTTTTCAGGTATACACATGACATC 57.731 34.615 5.01 0.00 44.61 3.06
389 390 8.635765 AAGTTTTTCAGGTATACACATGACAT 57.364 30.769 5.01 0.00 44.61 3.06
390 391 8.458573 AAAGTTTTTCAGGTATACACATGACA 57.541 30.769 5.01 0.00 44.61 3.58
391 392 8.021396 GGAAAGTTTTTCAGGTATACACATGAC 58.979 37.037 5.01 0.00 44.61 3.06
392 393 7.942341 AGGAAAGTTTTTCAGGTATACACATGA 59.058 33.333 5.01 3.09 43.35 3.07
393 394 8.023128 CAGGAAAGTTTTTCAGGTATACACATG 58.977 37.037 5.01 0.00 37.80 3.21
394 395 7.309194 GCAGGAAAGTTTTTCAGGTATACACAT 60.309 37.037 5.01 0.00 0.00 3.21
395 396 6.016610 GCAGGAAAGTTTTTCAGGTATACACA 60.017 38.462 5.01 0.00 0.00 3.72
396 397 6.206829 AGCAGGAAAGTTTTTCAGGTATACAC 59.793 38.462 5.01 0.00 0.00 2.90
397 398 6.206634 CAGCAGGAAAGTTTTTCAGGTATACA 59.793 38.462 5.01 0.00 0.00 2.29
398 399 6.612306 CAGCAGGAAAGTTTTTCAGGTATAC 58.388 40.000 0.00 0.00 0.00 1.47
399 400 5.183140 GCAGCAGGAAAGTTTTTCAGGTATA 59.817 40.000 4.19 0.00 0.00 1.47
400 401 4.021981 GCAGCAGGAAAGTTTTTCAGGTAT 60.022 41.667 4.19 0.00 0.00 2.73
401 402 3.317993 GCAGCAGGAAAGTTTTTCAGGTA 59.682 43.478 4.19 0.00 0.00 3.08
402 403 2.101415 GCAGCAGGAAAGTTTTTCAGGT 59.899 45.455 4.19 0.00 0.00 4.00
403 404 2.101249 TGCAGCAGGAAAGTTTTTCAGG 59.899 45.455 0.00 0.00 0.00 3.86
404 405 3.118542 GTGCAGCAGGAAAGTTTTTCAG 58.881 45.455 0.00 0.00 0.00 3.02
405 406 2.495270 TGTGCAGCAGGAAAGTTTTTCA 59.505 40.909 0.00 0.00 0.00 2.69
406 407 2.860136 GTGTGCAGCAGGAAAGTTTTTC 59.140 45.455 0.00 0.00 0.00 2.29
407 408 2.735126 CGTGTGCAGCAGGAAAGTTTTT 60.735 45.455 0.00 0.00 35.14 1.94
408 409 1.202290 CGTGTGCAGCAGGAAAGTTTT 60.202 47.619 0.00 0.00 35.14 2.43
409 410 0.381801 CGTGTGCAGCAGGAAAGTTT 59.618 50.000 0.00 0.00 35.14 2.66
410 411 0.748005 ACGTGTGCAGCAGGAAAGTT 60.748 50.000 13.41 0.00 36.83 2.66
411 412 0.748005 AACGTGTGCAGCAGGAAAGT 60.748 50.000 13.41 0.00 36.83 2.66
412 413 0.040958 GAACGTGTGCAGCAGGAAAG 60.041 55.000 13.41 0.00 36.83 2.62
413 414 0.746204 TGAACGTGTGCAGCAGGAAA 60.746 50.000 13.41 0.00 36.83 3.13
414 415 0.746204 TTGAACGTGTGCAGCAGGAA 60.746 50.000 13.41 0.00 36.83 3.36
415 416 1.153269 TTGAACGTGTGCAGCAGGA 60.153 52.632 13.41 0.00 36.83 3.86
416 417 1.009675 GTTGAACGTGTGCAGCAGG 60.010 57.895 0.00 0.00 38.79 4.85
417 418 0.589729 GTGTTGAACGTGTGCAGCAG 60.590 55.000 0.00 0.00 0.00 4.24
418 419 1.427419 GTGTTGAACGTGTGCAGCA 59.573 52.632 0.00 0.00 0.00 4.41
419 420 1.298339 GGTGTTGAACGTGTGCAGC 60.298 57.895 0.00 0.00 0.00 5.25
420 421 1.011242 CGGTGTTGAACGTGTGCAG 60.011 57.895 0.00 0.00 0.00 4.41
421 422 3.094154 CGGTGTTGAACGTGTGCA 58.906 55.556 0.00 0.00 0.00 4.57
422 423 2.351888 GCGGTGTTGAACGTGTGC 60.352 61.111 0.00 0.00 0.00 4.57
423 424 2.326550 GGCGGTGTTGAACGTGTG 59.673 61.111 0.00 0.00 0.00 3.82
424 425 2.125065 TGGCGGTGTTGAACGTGT 60.125 55.556 0.00 0.00 0.00 4.49
425 426 2.326550 GTGGCGGTGTTGAACGTG 59.673 61.111 0.00 0.00 0.00 4.49
426 427 2.898343 GGTGGCGGTGTTGAACGT 60.898 61.111 0.00 0.00 0.00 3.99
427 428 1.994507 TTTGGTGGCGGTGTTGAACG 61.995 55.000 0.00 0.00 0.00 3.95
428 429 0.173708 TTTTGGTGGCGGTGTTGAAC 59.826 50.000 0.00 0.00 0.00 3.18
429 430 0.173708 GTTTTGGTGGCGGTGTTGAA 59.826 50.000 0.00 0.00 0.00 2.69
430 431 1.810532 GTTTTGGTGGCGGTGTTGA 59.189 52.632 0.00 0.00 0.00 3.18
431 432 1.587613 CGTTTTGGTGGCGGTGTTG 60.588 57.895 0.00 0.00 0.00 3.33
432 433 2.776913 CCGTTTTGGTGGCGGTGTT 61.777 57.895 0.00 0.00 40.53 3.32
433 434 3.213402 CCGTTTTGGTGGCGGTGT 61.213 61.111 0.00 0.00 40.53 4.16
434 435 4.639171 GCCGTTTTGGTGGCGGTG 62.639 66.667 4.16 0.00 46.41 4.94
439 440 1.388065 TTGTCCTGCCGTTTTGGTGG 61.388 55.000 0.00 0.00 41.21 4.61
440 441 0.248866 GTTGTCCTGCCGTTTTGGTG 60.249 55.000 0.00 0.00 41.21 4.17
441 442 0.395173 AGTTGTCCTGCCGTTTTGGT 60.395 50.000 0.00 0.00 41.21 3.67
442 443 0.030638 CAGTTGTCCTGCCGTTTTGG 59.969 55.000 0.00 0.00 42.50 3.28
443 444 1.021202 TCAGTTGTCCTGCCGTTTTG 58.979 50.000 0.00 0.00 41.25 2.44
444 445 1.021968 GTCAGTTGTCCTGCCGTTTT 58.978 50.000 0.00 0.00 41.25 2.43
445 446 0.818040 GGTCAGTTGTCCTGCCGTTT 60.818 55.000 0.00 0.00 41.25 3.60
446 447 1.227853 GGTCAGTTGTCCTGCCGTT 60.228 57.895 0.00 0.00 41.25 4.44
447 448 2.426023 GGTCAGTTGTCCTGCCGT 59.574 61.111 0.00 0.00 41.25 5.68
448 449 2.358737 GGGTCAGTTGTCCTGCCG 60.359 66.667 0.00 0.00 41.25 5.69
449 450 2.358737 CGGGTCAGTTGTCCTGCC 60.359 66.667 0.00 0.00 41.25 4.85
450 451 3.050275 GCGGGTCAGTTGTCCTGC 61.050 66.667 12.28 12.28 45.43 4.85
451 452 2.507110 ATCGCGGGTCAGTTGTCCTG 62.507 60.000 6.13 0.56 42.97 3.86
452 453 2.227089 GATCGCGGGTCAGTTGTCCT 62.227 60.000 6.13 0.00 0.00 3.85
453 454 1.810030 GATCGCGGGTCAGTTGTCC 60.810 63.158 6.13 0.00 0.00 4.02
454 455 0.669318 TTGATCGCGGGTCAGTTGTC 60.669 55.000 6.13 0.00 0.00 3.18
455 456 0.036388 ATTGATCGCGGGTCAGTTGT 60.036 50.000 6.13 0.00 0.00 3.32
456 457 1.086696 AATTGATCGCGGGTCAGTTG 58.913 50.000 17.39 0.00 0.00 3.16
457 458 1.468520 CAAATTGATCGCGGGTCAGTT 59.531 47.619 6.13 11.47 0.00 3.16
458 459 1.086696 CAAATTGATCGCGGGTCAGT 58.913 50.000 6.13 5.40 0.00 3.41
459 460 0.248215 GCAAATTGATCGCGGGTCAG 60.248 55.000 6.13 0.90 0.00 3.51
460 461 1.653094 GGCAAATTGATCGCGGGTCA 61.653 55.000 6.13 8.78 0.00 4.02
461 462 1.064134 GGCAAATTGATCGCGGGTC 59.936 57.895 6.13 5.81 0.00 4.46
462 463 1.677300 TGGCAAATTGATCGCGGGT 60.677 52.632 6.13 0.00 0.00 5.28
463 464 1.226660 GTGGCAAATTGATCGCGGG 60.227 57.895 6.13 0.00 0.00 6.13
464 465 0.171007 AAGTGGCAAATTGATCGCGG 59.829 50.000 6.13 0.00 0.00 6.46
465 466 1.538276 GAAGTGGCAAATTGATCGCG 58.462 50.000 0.00 0.00 0.00 5.87
466 467 1.469767 GGGAAGTGGCAAATTGATCGC 60.470 52.381 0.00 0.00 0.00 4.58
467 468 1.818060 TGGGAAGTGGCAAATTGATCG 59.182 47.619 0.00 0.00 0.00 3.69
468 469 3.091545 TCTGGGAAGTGGCAAATTGATC 58.908 45.455 0.00 0.00 0.00 2.92
469 470 2.827921 GTCTGGGAAGTGGCAAATTGAT 59.172 45.455 0.00 0.00 0.00 2.57
470 471 2.238521 GTCTGGGAAGTGGCAAATTGA 58.761 47.619 0.00 0.00 0.00 2.57
471 472 1.273327 GGTCTGGGAAGTGGCAAATTG 59.727 52.381 0.00 0.00 0.00 2.32
472 473 1.133199 TGGTCTGGGAAGTGGCAAATT 60.133 47.619 0.00 0.00 0.00 1.82
473 474 0.482446 TGGTCTGGGAAGTGGCAAAT 59.518 50.000 0.00 0.00 0.00 2.32
474 475 0.178992 CTGGTCTGGGAAGTGGCAAA 60.179 55.000 0.00 0.00 0.00 3.68
475 476 1.455849 CTGGTCTGGGAAGTGGCAA 59.544 57.895 0.00 0.00 0.00 4.52
476 477 2.528818 CCTGGTCTGGGAAGTGGCA 61.529 63.158 0.00 0.00 0.00 4.92
477 478 2.352805 CCTGGTCTGGGAAGTGGC 59.647 66.667 0.00 0.00 0.00 5.01
478 479 2.352805 GCCTGGTCTGGGAAGTGG 59.647 66.667 0.00 0.00 0.00 4.00
479 480 2.046892 CGCCTGGTCTGGGAAGTG 60.047 66.667 0.00 0.00 0.00 3.16
480 481 4.021925 GCGCCTGGTCTGGGAAGT 62.022 66.667 0.00 0.00 0.00 3.01
547 548 3.151022 GTGGAGGAGGAGGAGCGG 61.151 72.222 0.00 0.00 0.00 5.52
548 549 1.743321 GATGTGGAGGAGGAGGAGCG 61.743 65.000 0.00 0.00 0.00 5.03
549 550 1.406860 GGATGTGGAGGAGGAGGAGC 61.407 65.000 0.00 0.00 0.00 4.70
550 551 0.031716 TGGATGTGGAGGAGGAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
551 552 0.325671 GTGGATGTGGAGGAGGAGGA 60.326 60.000 0.00 0.00 0.00 3.71
552 553 1.341156 GGTGGATGTGGAGGAGGAGG 61.341 65.000 0.00 0.00 0.00 4.30
553 554 0.326048 AGGTGGATGTGGAGGAGGAG 60.326 60.000 0.00 0.00 0.00 3.69
554 555 1.015609 TAGGTGGATGTGGAGGAGGA 58.984 55.000 0.00 0.00 0.00 3.71
555 556 1.123928 GTAGGTGGATGTGGAGGAGG 58.876 60.000 0.00 0.00 0.00 4.30
556 557 1.123928 GGTAGGTGGATGTGGAGGAG 58.876 60.000 0.00 0.00 0.00 3.69
557 558 0.326238 GGGTAGGTGGATGTGGAGGA 60.326 60.000 0.00 0.00 0.00 3.71
558 559 1.686325 CGGGTAGGTGGATGTGGAGG 61.686 65.000 0.00 0.00 0.00 4.30
559 560 1.823295 CGGGTAGGTGGATGTGGAG 59.177 63.158 0.00 0.00 0.00 3.86
560 561 2.363975 GCGGGTAGGTGGATGTGGA 61.364 63.158 0.00 0.00 0.00 4.02
561 562 2.189521 GCGGGTAGGTGGATGTGG 59.810 66.667 0.00 0.00 0.00 4.17
562 563 1.024579 GTTGCGGGTAGGTGGATGTG 61.025 60.000 0.00 0.00 0.00 3.21
563 564 1.298667 GTTGCGGGTAGGTGGATGT 59.701 57.895 0.00 0.00 0.00 3.06
564 565 1.451387 GGTTGCGGGTAGGTGGATG 60.451 63.158 0.00 0.00 0.00 3.51
565 566 2.995547 GGTTGCGGGTAGGTGGAT 59.004 61.111 0.00 0.00 0.00 3.41
566 567 3.697747 CGGTTGCGGGTAGGTGGA 61.698 66.667 0.00 0.00 0.00 4.02
577 578 4.947147 TGGACACCTGGCGGTTGC 62.947 66.667 0.00 0.00 42.13 4.17
578 579 2.669569 CTGGACACCTGGCGGTTG 60.670 66.667 0.00 0.00 42.13 3.77
579 580 4.643387 GCTGGACACCTGGCGGTT 62.643 66.667 0.00 0.00 42.13 4.44
581 582 4.335647 AAGCTGGACACCTGGCGG 62.336 66.667 0.00 0.00 0.00 6.13
582 583 2.743928 GAAGCTGGACACCTGGCG 60.744 66.667 0.00 0.00 0.00 5.69
583 584 2.360475 GGAAGCTGGACACCTGGC 60.360 66.667 0.00 0.00 0.00 4.85
584 585 2.046892 CGGAAGCTGGACACCTGG 60.047 66.667 0.00 0.00 0.00 4.45
596 597 4.148825 CGGAGGTGGAGGCGGAAG 62.149 72.222 0.00 0.00 0.00 3.46
601 602 3.959991 GAGTTGCGGAGGTGGAGGC 62.960 68.421 0.00 0.00 0.00 4.70
602 603 2.266055 GAGTTGCGGAGGTGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
603 604 1.831652 AAGGAGTTGCGGAGGTGGAG 61.832 60.000 0.00 0.00 0.00 3.86
607 608 0.543174 AGAGAAGGAGTTGCGGAGGT 60.543 55.000 0.00 0.00 0.00 3.85
616 617 1.081277 GGGGTGGGAGAGAAGGAGT 59.919 63.158 0.00 0.00 0.00 3.85
647 648 3.204827 GAGGCGCATGCGGAACAT 61.205 61.111 38.22 21.67 44.10 2.71
715 716 0.998945 AGGAGGAGGAGGAGGAGAGG 60.999 65.000 0.00 0.00 0.00 3.69
718 719 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
729 730 1.571457 TGGAGAAGTAGGAGGAGGAGG 59.429 57.143 0.00 0.00 0.00 4.30
734 735 1.288335 GGAGGTGGAGAAGTAGGAGGA 59.712 57.143 0.00 0.00 0.00 3.71
735 736 1.007238 TGGAGGTGGAGAAGTAGGAGG 59.993 57.143 0.00 0.00 0.00 4.30
741 742 0.900647 CGAGGTGGAGGTGGAGAAGT 60.901 60.000 0.00 0.00 0.00 3.01
949 958 2.516460 CCATCTCTGCAGGCAGCC 60.516 66.667 15.13 1.84 44.83 4.85
980 989 2.125106 GCGGTTGAAGAGGGCGAT 60.125 61.111 0.00 0.00 0.00 4.58
1029 1038 2.920384 TGTAGACTGTGGGCGGCA 60.920 61.111 12.47 0.00 0.00 5.69
1216 1227 2.558795 CGAGGTCGGACATCCTATGAAT 59.441 50.000 16.24 0.00 33.83 2.57
1266 1282 2.171448 ACACAGGCTCTTCAGAACTGTT 59.829 45.455 9.87 0.00 39.06 3.16
1282 1298 2.548875 GCTCCTGCTATCTTCACACAG 58.451 52.381 0.00 0.00 36.03 3.66
1317 1333 3.785859 GCCATCACCCGGAGCAGA 61.786 66.667 0.73 0.00 0.00 4.26
1377 1408 6.560003 TCCTTAAAGAAGCCATAGATGACA 57.440 37.500 0.00 0.00 0.00 3.58
1694 1727 3.650298 TTGCAGAGGGAGGCCATGC 62.650 63.158 5.01 5.81 37.40 4.06
1943 1976 6.200808 CGCATTTCAGTCAACATATGCATAA 58.799 36.000 11.13 0.00 38.55 1.90
2524 2563 6.418101 ACCCATCCAGTATGATGTTATATGC 58.582 40.000 0.00 0.00 40.43 3.14
2564 2603 4.330620 ACAACTTCTTTGCAGCAATTGTTG 59.669 37.500 25.05 25.05 39.01 3.33
2653 2692 6.375736 TCATCGGTGCAATTATTCCTACAAAA 59.624 34.615 0.00 0.00 0.00 2.44
2823 2862 4.320057 CCGTAAGTAGAGGCATTAGGTACG 60.320 50.000 0.00 0.00 33.45 3.67
2970 3009 3.265995 TGACTATCTCCCCCTTTTCCAAC 59.734 47.826 0.00 0.00 0.00 3.77
2994 3033 8.955388 TCAACTTTAGACATATAATTTGCTGCA 58.045 29.630 0.00 0.00 0.00 4.41
3048 3087 2.676342 AGACAACAACAACGAAGTGGTC 59.324 45.455 0.00 0.00 44.39 4.02
3241 3280 0.535102 GGCATTATCACCCAGACCGG 60.535 60.000 0.00 0.00 0.00 5.28
3244 3283 1.299541 CACGGCATTATCACCCAGAC 58.700 55.000 0.00 0.00 0.00 3.51
3264 3303 0.607217 CAGAGCAGAACACCATGGCA 60.607 55.000 13.04 0.00 0.00 4.92
3319 3360 2.143122 GACAGCATGAAGACGGAACAA 58.857 47.619 0.00 0.00 39.69 2.83
3320 3361 1.344438 AGACAGCATGAAGACGGAACA 59.656 47.619 0.00 0.00 39.69 3.18
3330 3371 0.397564 TGCACAAGGAGACAGCATGA 59.602 50.000 0.00 0.00 39.69 3.07
3354 3395 0.034574 AAGCACCACACACCAGACAA 60.035 50.000 0.00 0.00 0.00 3.18
3397 3442 2.494059 CATCATATGACCCCGAACACC 58.506 52.381 7.78 0.00 0.00 4.16
3402 3447 1.055849 CCACCATCATATGACCCCGA 58.944 55.000 7.78 0.00 0.00 5.14
3403 3448 1.055849 TCCACCATCATATGACCCCG 58.944 55.000 7.78 0.00 0.00 5.73
3404 3449 2.915604 AGATCCACCATCATATGACCCC 59.084 50.000 7.78 0.00 33.29 4.95
3405 3450 4.202503 ACAAGATCCACCATCATATGACCC 60.203 45.833 7.78 0.00 33.29 4.46
3406 3451 4.978099 ACAAGATCCACCATCATATGACC 58.022 43.478 7.78 0.00 33.29 4.02
3438 3483 4.023980 ACACCATGAGGAAGAACTCGATA 58.976 43.478 0.00 0.00 40.39 2.92
3445 3490 3.515502 CCAGAGTACACCATGAGGAAGAA 59.484 47.826 0.00 0.00 38.69 2.52
3454 3499 2.828520 CAGTGAGACCAGAGTACACCAT 59.171 50.000 0.00 0.00 35.37 3.55
3460 3505 1.257743 GGTGCAGTGAGACCAGAGTA 58.742 55.000 6.84 0.00 31.97 2.59
3538 3591 4.789481 GCACATCATACACCAATTTAGCCG 60.789 45.833 0.00 0.00 0.00 5.52
3623 3679 2.929641 TCTGACACAGCCACATTCAAA 58.070 42.857 0.00 0.00 0.00 2.69
3633 3689 3.750130 ACAAGTCATGAATCTGACACAGC 59.250 43.478 0.00 0.00 46.45 4.40
3636 3692 6.870965 ACTCTAACAAGTCATGAATCTGACAC 59.129 38.462 0.00 0.00 46.45 3.67
3643 3699 6.233434 TGCTTCACTCTAACAAGTCATGAAT 58.767 36.000 0.00 0.00 0.00 2.57
3647 3703 6.072286 CCAATTGCTTCACTCTAACAAGTCAT 60.072 38.462 0.00 0.00 0.00 3.06
3652 3708 3.255642 GCCCAATTGCTTCACTCTAACAA 59.744 43.478 0.00 0.00 0.00 2.83
3662 3718 0.455005 GAGCTGAGCCCAATTGCTTC 59.545 55.000 0.00 0.00 42.95 3.86
3666 3722 0.809385 CTGTGAGCTGAGCCCAATTG 59.191 55.000 0.00 0.00 0.00 2.32
3822 3884 0.808060 GAACTTCGCTCCAGCTAGGC 60.808 60.000 0.00 0.00 39.32 3.93
3980 4042 3.251729 ACATTGCAGAGCTTATATTGCCG 59.748 43.478 0.00 0.00 35.75 5.69
4086 4149 4.979197 CACATTTTAAAAGCGGTACAAGCA 59.021 37.500 13.78 0.00 37.01 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.