Multiple sequence alignment - TraesCS1A01G066900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G066900 chr1A 100.000 5390 0 0 835 6224 49149510 49154899 0.000000e+00 9954.0
1 TraesCS1A01G066900 chr1A 100.000 602 0 0 1 602 49148676 49149277 0.000000e+00 1112.0
2 TraesCS1A01G066900 chr1B 97.398 2229 36 6 2255 4478 69904048 69906259 0.000000e+00 3775.0
3 TraesCS1A01G066900 chr1B 91.029 1672 68 23 4588 6224 69906538 69908162 0.000000e+00 2182.0
4 TraesCS1A01G066900 chr1B 92.239 1456 60 19 835 2241 69902551 69904002 0.000000e+00 2013.0
5 TraesCS1A01G066900 chr1B 92.857 182 7 6 279 456 69901677 69901856 6.190000e-65 259.0
6 TraesCS1A01G066900 chr1B 81.283 187 21 8 268 451 69882850 69883025 8.410000e-29 139.0
7 TraesCS1A01G066900 chr1D 98.055 1851 33 2 2631 4478 49601854 49603704 0.000000e+00 3216.0
8 TraesCS1A01G066900 chr1D 92.030 1443 63 22 835 2241 49600054 49601480 0.000000e+00 1980.0
9 TraesCS1A01G066900 chr1D 94.084 862 33 11 4595 5452 49603707 49604554 0.000000e+00 1293.0
10 TraesCS1A01G066900 chr1D 93.624 596 24 2 5643 6224 49604825 49605420 0.000000e+00 878.0
11 TraesCS1A01G066900 chr1D 97.281 331 8 1 2255 2585 49601526 49601855 1.520000e-155 560.0
12 TraesCS1A01G066900 chr1D 90.000 130 11 2 5461 5589 49604534 49604662 3.860000e-37 167.0
13 TraesCS1A01G066900 chr6B 85.128 390 35 7 1817 2206 149451868 149452234 1.640000e-100 377.0
14 TraesCS1A01G066900 chr6B 79.365 315 51 7 5912 6222 42201860 42202164 6.320000e-50 209.0
15 TraesCS1A01G066900 chr6B 78.310 355 53 13 5881 6222 42198474 42198817 2.270000e-49 207.0
16 TraesCS1A01G066900 chr4B 86.111 252 29 6 10 257 317161032 317161281 3.700000e-67 267.0
17 TraesCS1A01G066900 chr4B 87.387 222 27 1 1817 2038 645638923 645639143 2.880000e-63 254.0
18 TraesCS1A01G066900 chr4B 87.387 222 27 1 1817 2038 645718026 645718246 2.880000e-63 254.0
19 TraesCS1A01G066900 chr4B 84.232 241 31 6 20 257 585021284 585021048 1.750000e-55 228.0
20 TraesCS1A01G066900 chr2A 87.838 222 26 1 1817 2038 19584187 19583967 6.190000e-65 259.0
21 TraesCS1A01G066900 chr2A 87.963 216 25 1 1823 2038 745823544 745823330 2.880000e-63 254.0
22 TraesCS1A01G066900 chr2A 87.963 216 25 1 1823 2038 745827398 745827184 2.880000e-63 254.0
23 TraesCS1A01G066900 chrUn 87.387 222 27 1 1817 2038 457393123 457393343 2.880000e-63 254.0
24 TraesCS1A01G066900 chrUn 81.853 259 34 11 1 254 95000013 95000263 8.180000e-49 206.0
25 TraesCS1A01G066900 chrUn 82.000 250 32 9 10 257 251537208 251536970 3.810000e-47 200.0
26 TraesCS1A01G066900 chr6A 84.170 259 35 6 3 257 12931364 12931620 4.820000e-61 246.0
27 TraesCS1A01G066900 chr6A 82.386 176 22 6 6053 6222 23929531 23929703 1.810000e-30 145.0
28 TraesCS1A01G066900 chr7D 83.200 250 31 7 10 257 566040342 566040102 1.050000e-52 219.0
29 TraesCS1A01G066900 chr5B 82.540 252 34 7 10 258 596635225 596635469 4.890000e-51 213.0
30 TraesCS1A01G066900 chr7A 82.470 251 30 11 10 257 652340863 652340624 2.270000e-49 207.0
31 TraesCS1A01G066900 chr7A 81.673 251 35 9 10 257 722009457 722009215 1.370000e-46 198.0
32 TraesCS1A01G066900 chr2B 90.196 51 4 1 5469 5518 477569985 477569935 1.450000e-06 65.8
33 TraesCS1A01G066900 chr2D 97.143 35 1 0 5484 5518 403470341 403470307 6.740000e-05 60.2
34 TraesCS1A01G066900 chr4A 96.875 32 0 1 5486 5516 669374641 669374610 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G066900 chr1A 49148676 49154899 6223 False 5533.00 9954 100.00000 1 6224 2 chr1A.!!$F1 6223
1 TraesCS1A01G066900 chr1B 69901677 69908162 6485 False 2057.25 3775 93.38075 279 6224 4 chr1B.!!$F2 5945
2 TraesCS1A01G066900 chr1D 49600054 49605420 5366 False 1349.00 3216 94.17900 835 6224 6 chr1D.!!$F1 5389
3 TraesCS1A01G066900 chr6B 42198474 42202164 3690 False 208.00 209 78.83750 5881 6222 2 chr6B.!!$F2 341
4 TraesCS1A01G066900 chr2A 745823330 745827398 4068 True 254.00 254 87.96300 1823 2038 2 chr2A.!!$R2 215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.036732 TGGAGCTGCCATTTTCGAGT 59.963 50.000 1.53 0.00 43.33 4.18 F
276 277 0.097150 GCCATTTTCGAGTTCTCCGC 59.903 55.000 0.00 0.00 0.00 5.54 F
1487 1998 0.108138 CCTTCCTCTGCTTACCACCG 60.108 60.000 0.00 0.00 0.00 4.94 F
1491 2002 0.389948 CCTCTGCTTACCACCGTGAC 60.390 60.000 0.00 0.00 0.00 3.67 F
1529 2040 1.067354 CCAAATTGCCTTGGCTCTGAC 60.067 52.381 13.18 0.00 39.55 3.51 F
2245 6619 1.326548 GCATAACGTAGGTTCTTGCGG 59.673 52.381 15.83 0.73 36.39 5.69 F
2249 6623 2.005971 ACGTAGGTTCTTGCGGAATC 57.994 50.000 0.00 0.00 36.24 2.52 F
2363 6768 3.417101 TCACATGCCGGAAGTTATTGTT 58.583 40.909 5.05 0.00 0.00 2.83 F
4134 8544 1.064654 GAAGCGGCCAATGTGATTCTC 59.935 52.381 2.24 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 2218 0.035439 TGTCCTCGGAGAAATTGCCC 60.035 55.000 6.58 0.00 34.09 5.36 R
1764 2282 2.200373 ATGTTAGCCTTGCGGTTTCT 57.800 45.000 0.00 0.00 0.00 2.52 R
2611 7016 2.107204 ACAAGCTTCAGGATCAACTGGT 59.893 45.455 0.00 0.00 38.98 4.00 R
2612 7017 2.746362 GACAAGCTTCAGGATCAACTGG 59.254 50.000 0.00 0.00 38.98 4.00 R
2613 7018 3.405831 TGACAAGCTTCAGGATCAACTG 58.594 45.455 0.00 0.00 39.84 3.16 R
3872 8280 1.277557 AGCTGAGGTGCTACAAGGAAG 59.722 52.381 0.00 0.00 42.10 3.46 R
4134 8544 3.473367 CTTCATTTCAGAACTTGACGCG 58.527 45.455 3.53 3.53 34.94 6.01 R
4380 8790 5.762279 TCTCCTTCCAAAACTTTAGGTTGT 58.238 37.500 0.00 0.00 38.29 3.32 R
5396 10013 0.040351 ACCAGAGAGGCAGTGAGCTA 59.960 55.000 0.00 0.00 44.79 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.796958 GTAAAATCGAGGATGAAAAACCTTG 57.203 36.000 0.00 0.00 38.61 3.61
25 26 6.648879 AAAATCGAGGATGAAAAACCTTGA 57.351 33.333 0.00 0.00 46.60 3.02
26 27 6.648879 AAATCGAGGATGAAAAACCTTGAA 57.351 33.333 0.00 0.00 45.96 2.69
27 28 6.840780 AATCGAGGATGAAAAACCTTGAAT 57.159 33.333 0.00 0.00 45.96 2.57
28 29 6.840780 ATCGAGGATGAAAAACCTTGAATT 57.159 33.333 0.00 0.00 45.96 2.17
29 30 6.012658 TCGAGGATGAAAAACCTTGAATTG 57.987 37.500 0.00 0.00 41.88 2.32
30 31 5.534654 TCGAGGATGAAAAACCTTGAATTGT 59.465 36.000 0.00 0.00 41.88 2.71
31 32 5.630680 CGAGGATGAAAAACCTTGAATTGTG 59.369 40.000 0.00 0.00 39.36 3.33
32 33 6.514870 CGAGGATGAAAAACCTTGAATTGTGA 60.515 38.462 0.00 0.00 39.36 3.58
33 34 6.752168 AGGATGAAAAACCTTGAATTGTGAG 58.248 36.000 0.00 0.00 31.95 3.51
34 35 5.406477 GGATGAAAAACCTTGAATTGTGAGC 59.594 40.000 0.00 0.00 0.00 4.26
35 36 5.596836 TGAAAAACCTTGAATTGTGAGCT 57.403 34.783 0.00 0.00 0.00 4.09
36 37 5.350633 TGAAAAACCTTGAATTGTGAGCTG 58.649 37.500 0.00 0.00 0.00 4.24
37 38 3.375782 AAACCTTGAATTGTGAGCTGC 57.624 42.857 0.00 0.00 0.00 5.25
38 39 0.877071 ACCTTGAATTGTGAGCTGCG 59.123 50.000 0.00 0.00 0.00 5.18
39 40 0.455633 CCTTGAATTGTGAGCTGCGC 60.456 55.000 0.00 0.00 0.00 6.09
40 41 0.239082 CTTGAATTGTGAGCTGCGCA 59.761 50.000 10.98 10.98 34.64 6.09
67 68 8.675705 AAAAACCAAAATTATGGACTTTGAGG 57.324 30.769 0.00 0.00 43.54 3.86
68 69 7.610580 AAACCAAAATTATGGACTTTGAGGA 57.389 32.000 0.00 0.00 43.54 3.71
69 70 7.797121 AACCAAAATTATGGACTTTGAGGAT 57.203 32.000 0.00 0.00 43.54 3.24
70 71 7.174107 ACCAAAATTATGGACTTTGAGGATG 57.826 36.000 0.00 0.00 43.54 3.51
71 72 6.953520 ACCAAAATTATGGACTTTGAGGATGA 59.046 34.615 0.00 0.00 43.54 2.92
72 73 7.454380 ACCAAAATTATGGACTTTGAGGATGAA 59.546 33.333 0.00 0.00 43.54 2.57
73 74 7.761249 CCAAAATTATGGACTTTGAGGATGAAC 59.239 37.037 0.00 0.00 43.54 3.18
74 75 8.306038 CAAAATTATGGACTTTGAGGATGAACA 58.694 33.333 0.00 0.00 32.87 3.18
75 76 8.421249 AAATTATGGACTTTGAGGATGAACAA 57.579 30.769 0.00 0.00 0.00 2.83
76 77 8.599624 AATTATGGACTTTGAGGATGAACAAT 57.400 30.769 0.00 0.00 0.00 2.71
77 78 9.699410 AATTATGGACTTTGAGGATGAACAATA 57.301 29.630 0.00 0.00 0.00 1.90
78 79 9.872684 ATTATGGACTTTGAGGATGAACAATAT 57.127 29.630 0.00 0.00 0.00 1.28
79 80 7.578310 ATGGACTTTGAGGATGAACAATATG 57.422 36.000 0.00 0.00 0.00 1.78
80 81 6.484288 TGGACTTTGAGGATGAACAATATGT 58.516 36.000 0.00 0.00 0.00 2.29
81 82 7.629157 TGGACTTTGAGGATGAACAATATGTA 58.371 34.615 0.00 0.00 0.00 2.29
82 83 8.274322 TGGACTTTGAGGATGAACAATATGTAT 58.726 33.333 0.00 0.00 0.00 2.29
83 84 8.562892 GGACTTTGAGGATGAACAATATGTATG 58.437 37.037 0.00 0.00 0.00 2.39
84 85 7.934457 ACTTTGAGGATGAACAATATGTATGC 58.066 34.615 0.00 0.00 0.00 3.14
85 86 7.776969 ACTTTGAGGATGAACAATATGTATGCT 59.223 33.333 0.00 0.00 0.00 3.79
86 87 9.276590 CTTTGAGGATGAACAATATGTATGCTA 57.723 33.333 0.00 0.00 0.00 3.49
87 88 9.625747 TTTGAGGATGAACAATATGTATGCTAA 57.374 29.630 0.00 0.00 0.00 3.09
88 89 9.625747 TTGAGGATGAACAATATGTATGCTAAA 57.374 29.630 0.00 0.00 0.00 1.85
89 90 9.625747 TGAGGATGAACAATATGTATGCTAAAA 57.374 29.630 0.00 0.00 0.00 1.52
92 93 9.185192 GGATGAACAATATGTATGCTAAAAAGC 57.815 33.333 0.00 0.00 0.00 3.51
93 94 9.185192 GATGAACAATATGTATGCTAAAAAGCC 57.815 33.333 0.00 0.00 0.00 4.35
94 95 8.060931 TGAACAATATGTATGCTAAAAAGCCA 57.939 30.769 0.00 0.00 0.00 4.75
95 96 7.973388 TGAACAATATGTATGCTAAAAAGCCAC 59.027 33.333 0.00 0.00 0.00 5.01
96 97 7.403312 ACAATATGTATGCTAAAAAGCCACA 57.597 32.000 4.91 4.91 34.69 4.17
97 98 8.010733 ACAATATGTATGCTAAAAAGCCACAT 57.989 30.769 14.96 14.96 40.31 3.21
98 99 9.130661 ACAATATGTATGCTAAAAAGCCACATA 57.869 29.630 17.20 17.20 41.50 2.29
104 105 8.792633 TGTATGCTAAAAAGCCACATATTATCC 58.207 33.333 0.00 0.00 0.00 2.59
105 106 9.014297 GTATGCTAAAAAGCCACATATTATCCT 57.986 33.333 0.00 0.00 0.00 3.24
106 107 7.896383 TGCTAAAAAGCCACATATTATCCTT 57.104 32.000 0.00 0.00 0.00 3.36
107 108 8.305046 TGCTAAAAAGCCACATATTATCCTTT 57.695 30.769 0.00 0.00 0.00 3.11
108 109 8.757877 TGCTAAAAAGCCACATATTATCCTTTT 58.242 29.630 0.00 0.00 34.92 2.27
109 110 9.599866 GCTAAAAAGCCACATATTATCCTTTTT 57.400 29.630 11.90 11.90 42.05 1.94
112 113 8.776376 AAAAGCCACATATTATCCTTTTTGTG 57.224 30.769 0.00 0.00 35.42 3.33
113 114 5.906073 AGCCACATATTATCCTTTTTGTGC 58.094 37.500 0.00 0.00 34.57 4.57
114 115 5.421693 AGCCACATATTATCCTTTTTGTGCA 59.578 36.000 0.00 0.00 34.57 4.57
115 116 5.750067 GCCACATATTATCCTTTTTGTGCAG 59.250 40.000 0.00 0.00 34.57 4.41
116 117 5.750067 CCACATATTATCCTTTTTGTGCAGC 59.250 40.000 0.00 0.00 34.57 5.25
117 118 6.406177 CCACATATTATCCTTTTTGTGCAGCT 60.406 38.462 0.00 0.00 34.57 4.24
118 119 6.694411 CACATATTATCCTTTTTGTGCAGCTC 59.306 38.462 0.00 0.00 0.00 4.09
119 120 6.604795 ACATATTATCCTTTTTGTGCAGCTCT 59.395 34.615 0.00 0.00 0.00 4.09
120 121 5.573337 ATTATCCTTTTTGTGCAGCTCTC 57.427 39.130 0.00 0.00 0.00 3.20
121 122 2.346766 TCCTTTTTGTGCAGCTCTCA 57.653 45.000 0.00 0.00 0.00 3.27
122 123 2.867624 TCCTTTTTGTGCAGCTCTCAT 58.132 42.857 0.00 0.00 0.00 2.90
123 124 3.225104 TCCTTTTTGTGCAGCTCTCATT 58.775 40.909 0.00 0.00 0.00 2.57
124 125 3.638160 TCCTTTTTGTGCAGCTCTCATTT 59.362 39.130 0.00 0.00 0.00 2.32
125 126 4.099881 TCCTTTTTGTGCAGCTCTCATTTT 59.900 37.500 0.00 0.00 0.00 1.82
126 127 4.812626 CCTTTTTGTGCAGCTCTCATTTTT 59.187 37.500 0.00 0.00 0.00 1.94
127 128 5.984926 CCTTTTTGTGCAGCTCTCATTTTTA 59.015 36.000 0.00 0.00 0.00 1.52
128 129 6.479660 CCTTTTTGTGCAGCTCTCATTTTTAA 59.520 34.615 0.00 0.00 0.00 1.52
129 130 6.826893 TTTTGTGCAGCTCTCATTTTTAAC 57.173 33.333 0.00 0.00 0.00 2.01
130 131 4.145876 TGTGCAGCTCTCATTTTTAACG 57.854 40.909 0.00 0.00 0.00 3.18
131 132 3.563808 TGTGCAGCTCTCATTTTTAACGT 59.436 39.130 0.00 0.00 0.00 3.99
132 133 4.752604 TGTGCAGCTCTCATTTTTAACGTA 59.247 37.500 0.00 0.00 0.00 3.57
133 134 5.411361 TGTGCAGCTCTCATTTTTAACGTAT 59.589 36.000 0.00 0.00 0.00 3.06
134 135 6.072728 TGTGCAGCTCTCATTTTTAACGTATT 60.073 34.615 0.00 0.00 0.00 1.89
135 136 6.801862 GTGCAGCTCTCATTTTTAACGTATTT 59.198 34.615 0.00 0.00 0.00 1.40
136 137 7.326063 GTGCAGCTCTCATTTTTAACGTATTTT 59.674 33.333 0.00 0.00 0.00 1.82
137 138 7.865385 TGCAGCTCTCATTTTTAACGTATTTTT 59.135 29.630 0.00 0.00 0.00 1.94
138 139 8.155923 GCAGCTCTCATTTTTAACGTATTTTTG 58.844 33.333 0.00 0.00 0.00 2.44
139 140 9.393249 CAGCTCTCATTTTTAACGTATTTTTGA 57.607 29.630 0.00 0.00 0.00 2.69
140 141 9.394477 AGCTCTCATTTTTAACGTATTTTTGAC 57.606 29.630 0.00 0.00 0.00 3.18
141 142 8.635983 GCTCTCATTTTTAACGTATTTTTGACC 58.364 33.333 0.00 0.00 0.00 4.02
142 143 9.893305 CTCTCATTTTTAACGTATTTTTGACCT 57.107 29.630 0.00 0.00 0.00 3.85
160 161 9.877178 TTTTGACCTAAAAATTTACACACATGT 57.123 25.926 0.00 0.00 37.80 3.21
162 163 9.953697 TTGACCTAAAAATTTACACACATGTAC 57.046 29.630 0.00 0.00 41.12 2.90
163 164 9.121658 TGACCTAAAAATTTACACACATGTACA 57.878 29.630 0.00 0.00 41.12 2.90
173 174 8.487313 TTTACACACATGTACATTATGTCTCC 57.513 34.615 16.32 0.00 41.12 3.71
174 175 6.048732 ACACACATGTACATTATGTCTCCA 57.951 37.500 16.32 0.00 37.26 3.86
175 176 6.108687 ACACACATGTACATTATGTCTCCAG 58.891 40.000 16.32 9.74 37.26 3.86
176 177 6.070824 ACACACATGTACATTATGTCTCCAGA 60.071 38.462 16.32 0.00 37.26 3.86
177 178 6.988580 CACACATGTACATTATGTCTCCAGAT 59.011 38.462 16.32 0.00 36.67 2.90
178 179 8.143835 CACACATGTACATTATGTCTCCAGATA 58.856 37.037 16.32 0.00 36.67 1.98
179 180 8.874156 ACACATGTACATTATGTCTCCAGATAT 58.126 33.333 14.24 0.00 36.67 1.63
248 249 6.096673 TGAAGTTTTCAAATTAAGGCCTCC 57.903 37.500 5.23 0.00 36.59 4.30
249 250 5.600484 TGAAGTTTTCAAATTAAGGCCTCCA 59.400 36.000 5.23 0.00 36.59 3.86
250 251 6.269769 TGAAGTTTTCAAATTAAGGCCTCCAT 59.730 34.615 5.23 0.00 36.59 3.41
251 252 6.041423 AGTTTTCAAATTAAGGCCTCCATG 57.959 37.500 5.23 1.29 0.00 3.66
252 253 5.046376 AGTTTTCAAATTAAGGCCTCCATGG 60.046 40.000 5.23 4.97 39.35 3.66
253 254 4.329638 TTCAAATTAAGGCCTCCATGGA 57.670 40.909 15.27 15.27 38.35 3.41
254 255 3.902218 TCAAATTAAGGCCTCCATGGAG 58.098 45.455 31.69 31.69 41.63 3.86
255 256 2.363359 CAAATTAAGGCCTCCATGGAGC 59.637 50.000 32.97 26.44 40.69 4.70
256 257 1.527457 ATTAAGGCCTCCATGGAGCT 58.473 50.000 32.97 23.24 40.69 4.09
257 258 0.548031 TTAAGGCCTCCATGGAGCTG 59.452 55.000 32.97 22.26 40.69 4.24
258 259 1.987807 TAAGGCCTCCATGGAGCTGC 61.988 60.000 32.97 29.33 40.69 5.25
259 260 4.891037 GGCCTCCATGGAGCTGCC 62.891 72.222 33.27 33.27 40.47 4.85
268 269 2.858622 TGGAGCTGCCATTTTCGAG 58.141 52.632 1.53 0.00 43.33 4.04
269 270 0.036732 TGGAGCTGCCATTTTCGAGT 59.963 50.000 1.53 0.00 43.33 4.18
270 271 1.168714 GGAGCTGCCATTTTCGAGTT 58.831 50.000 0.00 0.00 36.34 3.01
271 272 1.131315 GGAGCTGCCATTTTCGAGTTC 59.869 52.381 0.00 0.00 36.34 3.01
272 273 2.079925 GAGCTGCCATTTTCGAGTTCT 58.920 47.619 0.00 0.00 0.00 3.01
273 274 2.079925 AGCTGCCATTTTCGAGTTCTC 58.920 47.619 0.00 0.00 0.00 2.87
274 275 1.131315 GCTGCCATTTTCGAGTTCTCC 59.869 52.381 0.00 0.00 0.00 3.71
275 276 1.394917 CTGCCATTTTCGAGTTCTCCG 59.605 52.381 0.00 0.00 0.00 4.63
276 277 0.097150 GCCATTTTCGAGTTCTCCGC 59.903 55.000 0.00 0.00 0.00 5.54
277 278 1.726853 CCATTTTCGAGTTCTCCGCT 58.273 50.000 0.00 0.00 0.00 5.52
278 279 2.888594 CCATTTTCGAGTTCTCCGCTA 58.111 47.619 0.00 0.00 0.00 4.26
279 280 3.259064 CCATTTTCGAGTTCTCCGCTAA 58.741 45.455 0.00 0.00 0.00 3.09
280 281 3.682858 CCATTTTCGAGTTCTCCGCTAAA 59.317 43.478 0.00 0.00 0.00 1.85
281 282 4.153475 CCATTTTCGAGTTCTCCGCTAAAA 59.847 41.667 0.00 0.00 0.00 1.52
282 283 5.163754 CCATTTTCGAGTTCTCCGCTAAAAT 60.164 40.000 0.00 0.00 29.51 1.82
283 284 4.921470 TTTCGAGTTCTCCGCTAAAATG 57.079 40.909 0.00 0.00 0.00 2.32
296 297 7.554835 TCTCCGCTAAAATGGTATACAAATTGT 59.445 33.333 3.43 3.43 0.00 2.71
329 330 3.942829 TGGTCTCTCCAAGCATTACAAG 58.057 45.455 0.00 0.00 44.12 3.16
340 341 5.927689 CCAAGCATTACAAGCAAGAATTTGA 59.072 36.000 0.00 0.00 36.36 2.69
413 416 5.277779 GCAAATTATAGCCGAGTGCACATAA 60.278 40.000 21.04 12.97 44.83 1.90
435 438 6.671614 AACACACTCGTGAATAGTTTTTCA 57.328 33.333 3.74 0.00 46.80 2.69
438 441 7.352739 ACACACTCGTGAATAGTTTTTCATTC 58.647 34.615 3.74 0.00 46.80 2.67
440 443 6.710744 ACACTCGTGAATAGTTTTTCATTCCT 59.289 34.615 3.74 0.00 37.88 3.36
453 456 9.018582 AGTTTTTCATTCCTGGAAGATCTTAAG 57.981 33.333 15.34 9.13 34.07 1.85
454 457 9.014297 GTTTTTCATTCCTGGAAGATCTTAAGA 57.986 33.333 15.34 7.82 34.07 2.10
455 458 8.798859 TTTTCATTCCTGGAAGATCTTAAGAG 57.201 34.615 15.34 4.55 34.07 2.85
459 910 6.793505 TTCCTGGAAGATCTTAAGAGTACC 57.206 41.667 8.25 11.44 34.07 3.34
460 911 5.209659 TCCTGGAAGATCTTAAGAGTACCC 58.790 45.833 8.25 9.91 34.07 3.69
497 948 5.284582 AGGAAGATCTTAAGAGGGATGTGT 58.715 41.667 8.25 0.00 0.00 3.72
498 949 5.130145 AGGAAGATCTTAAGAGGGATGTGTG 59.870 44.000 8.25 0.00 0.00 3.82
500 951 5.350504 AGATCTTAAGAGGGATGTGTGTG 57.649 43.478 11.53 0.00 0.00 3.82
501 952 3.334583 TCTTAAGAGGGATGTGTGTGC 57.665 47.619 0.00 0.00 0.00 4.57
502 953 2.002586 CTTAAGAGGGATGTGTGTGCG 58.997 52.381 0.00 0.00 0.00 5.34
505 956 1.301716 GAGGGATGTGTGTGCGTGT 60.302 57.895 0.00 0.00 0.00 4.49
549 1014 0.464036 TGGATATCCGGTGTCTGCAC 59.536 55.000 17.04 0.00 44.53 4.57
550 1015 0.597637 GGATATCCGGTGTCTGCACG 60.598 60.000 5.86 0.00 46.13 5.34
562 1027 2.125147 TGCACGGTAGCATCTGCC 60.125 61.111 0.00 0.00 43.38 4.85
580 1045 2.733593 GCACGACTGACCGACCAC 60.734 66.667 0.00 0.00 0.00 4.16
889 1354 2.731374 CTTCCTCCGCCTCCGATC 59.269 66.667 0.00 0.00 36.29 3.69
904 1369 1.318380 GATCCCCTTCCCTCCTCCA 59.682 63.158 0.00 0.00 0.00 3.86
1000 1489 4.028490 GCCATCACCCGGTGACCA 62.028 66.667 22.79 0.62 45.65 4.02
1278 1779 2.125350 GAGCTGGAGGCGTTCCTG 60.125 66.667 0.00 9.34 46.92 3.86
1472 1973 2.435059 GCCGTCACCTCAGCCTTC 60.435 66.667 0.00 0.00 0.00 3.46
1487 1998 0.108138 CCTTCCTCTGCTTACCACCG 60.108 60.000 0.00 0.00 0.00 4.94
1491 2002 0.389948 CCTCTGCTTACCACCGTGAC 60.390 60.000 0.00 0.00 0.00 3.67
1528 2039 1.259609 CCAAATTGCCTTGGCTCTGA 58.740 50.000 13.18 0.00 39.55 3.27
1529 2040 1.067354 CCAAATTGCCTTGGCTCTGAC 60.067 52.381 13.18 0.00 39.55 3.51
1559 2070 6.978659 TGTTGCAGTATCAATACTACTGTAGC 59.021 38.462 14.55 9.40 45.10 3.58
1597 2108 2.555325 TGGAGATGCTTGTTTTGCTCAG 59.445 45.455 0.00 0.00 0.00 3.35
1616 2127 5.645497 GCTCAGTTGGAAGATCAACAATACT 59.355 40.000 9.85 0.00 46.74 2.12
1617 2128 6.150140 GCTCAGTTGGAAGATCAACAATACTT 59.850 38.462 9.85 0.00 46.74 2.24
1651 2162 8.094548 ACTGTAGTATGAAAGTTGCTTATGTGA 58.905 33.333 0.00 0.00 0.00 3.58
1670 2188 3.732721 GTGAAGATGCTTGTTTTGCTCAC 59.267 43.478 0.00 0.00 0.00 3.51
1700 2218 1.532868 CGGTTTCTCTCTTTGCAGGTG 59.467 52.381 0.00 0.00 0.00 4.00
1764 2282 3.469970 ACCGGATCAGCGCCATCA 61.470 61.111 9.46 0.00 0.00 3.07
1805 2323 1.594293 CGGTCTCACTTGCCGTGTT 60.594 57.895 3.56 0.00 44.16 3.32
1829 2347 2.048222 GCTATATCGGGCAGCGCA 60.048 61.111 11.47 0.00 0.00 6.09
1850 2368 3.806521 CAGAGATGATCCGTGATTTGGTC 59.193 47.826 0.00 0.00 0.00 4.02
1958 6330 2.438868 TTGATCAGTGGTGTCAGTCG 57.561 50.000 0.00 0.00 0.00 4.18
2031 6405 5.487433 TGAGAAGACCAAAGATAAATCGCA 58.513 37.500 0.00 0.00 0.00 5.10
2071 6445 7.541783 TGATCCTAACAATTCAAAATGCTTTCG 59.458 33.333 0.00 0.00 0.00 3.46
2114 6488 3.471680 GATCTTGGCAGATGAGGGTAAC 58.528 50.000 4.51 0.00 40.14 2.50
2177 6551 3.317280 TGGGGATGTACCTCACTCC 57.683 57.895 0.19 0.08 45.39 3.85
2241 6615 3.328382 TGCAGCATAACGTAGGTTCTT 57.672 42.857 3.67 0.00 37.58 2.52
2242 6616 3.000041 TGCAGCATAACGTAGGTTCTTG 59.000 45.455 3.67 5.57 37.58 3.02
2243 6617 2.223044 GCAGCATAACGTAGGTTCTTGC 60.223 50.000 20.17 20.17 41.82 4.01
2244 6618 2.029244 CAGCATAACGTAGGTTCTTGCG 59.971 50.000 20.93 15.41 44.13 4.85
2245 6619 1.326548 GCATAACGTAGGTTCTTGCGG 59.673 52.381 15.83 0.73 36.39 5.69
2246 6620 2.883574 CATAACGTAGGTTCTTGCGGA 58.116 47.619 3.67 0.00 37.58 5.54
2247 6621 3.255725 CATAACGTAGGTTCTTGCGGAA 58.744 45.455 3.67 0.00 37.58 4.30
2248 6622 2.467566 AACGTAGGTTCTTGCGGAAT 57.532 45.000 0.00 0.00 36.24 3.01
2249 6623 2.005971 ACGTAGGTTCTTGCGGAATC 57.994 50.000 0.00 0.00 36.24 2.52
2253 6627 3.676324 CGTAGGTTCTTGCGGAATCTTCT 60.676 47.826 9.70 3.00 42.22 2.85
2254 6628 4.439700 CGTAGGTTCTTGCGGAATCTTCTA 60.440 45.833 9.70 2.29 42.22 2.10
2255 6629 4.130286 AGGTTCTTGCGGAATCTTCTAG 57.870 45.455 0.00 0.00 42.22 2.43
2258 6632 4.246458 GTTCTTGCGGAATCTTCTAGTGT 58.754 43.478 0.00 0.00 36.24 3.55
2259 6633 4.111375 TCTTGCGGAATCTTCTAGTGTC 57.889 45.455 0.00 0.00 0.00 3.67
2261 6635 4.220821 TCTTGCGGAATCTTCTAGTGTCTT 59.779 41.667 0.00 0.00 0.00 3.01
2262 6636 4.537135 TGCGGAATCTTCTAGTGTCTTT 57.463 40.909 0.00 0.00 0.00 2.52
2263 6637 4.245660 TGCGGAATCTTCTAGTGTCTTTG 58.754 43.478 0.00 0.00 0.00 2.77
2264 6638 4.246458 GCGGAATCTTCTAGTGTCTTTGT 58.754 43.478 0.00 0.00 0.00 2.83
2266 6640 5.179555 GCGGAATCTTCTAGTGTCTTTGTTT 59.820 40.000 0.00 0.00 0.00 2.83
2267 6641 6.367969 GCGGAATCTTCTAGTGTCTTTGTTTA 59.632 38.462 0.00 0.00 0.00 2.01
2269 6643 8.936864 CGGAATCTTCTAGTGTCTTTGTTTAAT 58.063 33.333 0.00 0.00 0.00 1.40
2363 6768 3.417101 TCACATGCCGGAAGTTATTGTT 58.583 40.909 5.05 0.00 0.00 2.83
2390 6795 5.518128 CGATGAGATTGGTACAGAACTTGAG 59.482 44.000 0.00 0.00 42.39 3.02
2605 7010 5.565592 TGAACATCAGATTAAAGCGCAAT 57.434 34.783 11.47 0.00 0.00 3.56
2606 7011 6.676237 TGAACATCAGATTAAAGCGCAATA 57.324 33.333 11.47 0.00 0.00 1.90
2607 7012 6.718388 TGAACATCAGATTAAAGCGCAATAG 58.282 36.000 11.47 0.00 0.00 1.73
2608 7013 6.316140 TGAACATCAGATTAAAGCGCAATAGT 59.684 34.615 11.47 0.00 0.00 2.12
2609 7014 6.292389 ACATCAGATTAAAGCGCAATAGTC 57.708 37.500 11.47 8.49 0.00 2.59
2610 7015 5.817296 ACATCAGATTAAAGCGCAATAGTCA 59.183 36.000 11.47 0.00 0.00 3.41
2611 7016 6.316140 ACATCAGATTAAAGCGCAATAGTCAA 59.684 34.615 11.47 1.85 0.00 3.18
2612 7017 6.106877 TCAGATTAAAGCGCAATAGTCAAC 57.893 37.500 11.47 0.00 0.00 3.18
2613 7018 5.064707 TCAGATTAAAGCGCAATAGTCAACC 59.935 40.000 11.47 0.00 0.00 3.77
2614 7019 4.941263 AGATTAAAGCGCAATAGTCAACCA 59.059 37.500 11.47 0.00 0.00 3.67
2840 7247 8.603242 TCTTGACTCTTTGGTGTATTTTAGAC 57.397 34.615 0.00 0.00 0.00 2.59
2902 7309 8.023021 AGGATAGTAGCATGATGACAACTTTA 57.977 34.615 0.00 0.00 0.00 1.85
2936 7343 9.421806 TGCCAATATTGAGTTTCAAGTAAAATG 57.578 29.630 17.23 0.00 40.05 2.32
3303 7711 6.872547 AGCATAGCACATAGTCATTACTCATG 59.127 38.462 0.00 0.00 37.15 3.07
3872 8280 8.319143 TGTAACTAGTATTTCAAAGAGTTGCC 57.681 34.615 0.00 0.00 34.50 4.52
4134 8544 1.064654 GAAGCGGCCAATGTGATTCTC 59.935 52.381 2.24 0.00 0.00 2.87
4380 8790 2.638744 TGATGCACCATCACGCAAA 58.361 47.368 3.91 0.00 44.60 3.68
4404 8814 6.192044 ACAACCTAAAGTTTTGGAAGGAGAA 58.808 36.000 20.91 0.00 36.18 2.87
4478 8888 5.371526 TGATGCATTGGAGGTAATCTCTTC 58.628 41.667 0.00 0.00 42.10 2.87
4481 8891 4.225942 TGCATTGGAGGTAATCTCTTCACT 59.774 41.667 0.00 0.00 42.10 3.41
4484 8894 6.648192 CATTGGAGGTAATCTCTTCACTTCT 58.352 40.000 0.00 0.00 42.10 2.85
4489 9095 9.661954 TGGAGGTAATCTCTTCACTTCTATATT 57.338 33.333 0.00 0.00 42.10 1.28
4515 9121 4.514066 GTGAAACAGTACCACTTAACAGGG 59.486 45.833 0.00 0.00 36.32 4.45
4552 9161 7.913674 ATCTTCTCAGAATACAGTCAAAACC 57.086 36.000 0.00 0.00 30.76 3.27
4554 9163 7.279615 TCTTCTCAGAATACAGTCAAAACCAA 58.720 34.615 0.00 0.00 0.00 3.67
4555 9164 7.442364 TCTTCTCAGAATACAGTCAAAACCAAG 59.558 37.037 0.00 0.00 0.00 3.61
4556 9165 6.826668 TCTCAGAATACAGTCAAAACCAAGA 58.173 36.000 0.00 0.00 0.00 3.02
4557 9166 7.453393 TCTCAGAATACAGTCAAAACCAAGAT 58.547 34.615 0.00 0.00 0.00 2.40
4558 9167 7.388776 TCTCAGAATACAGTCAAAACCAAGATG 59.611 37.037 0.00 0.00 0.00 2.90
4559 9168 7.223584 TCAGAATACAGTCAAAACCAAGATGA 58.776 34.615 0.00 0.00 0.00 2.92
4560 9169 7.388776 TCAGAATACAGTCAAAACCAAGATGAG 59.611 37.037 0.00 0.00 0.00 2.90
4561 9170 5.886960 ATACAGTCAAAACCAAGATGAGC 57.113 39.130 0.00 0.00 0.00 4.26
4562 9171 2.549754 ACAGTCAAAACCAAGATGAGCG 59.450 45.455 0.00 0.00 0.00 5.03
4563 9172 2.549754 CAGTCAAAACCAAGATGAGCGT 59.450 45.455 0.00 0.00 0.00 5.07
4564 9173 3.003689 CAGTCAAAACCAAGATGAGCGTT 59.996 43.478 0.00 0.00 0.00 4.84
4565 9174 3.632145 AGTCAAAACCAAGATGAGCGTTT 59.368 39.130 0.00 0.00 0.00 3.60
4566 9175 4.097892 AGTCAAAACCAAGATGAGCGTTTT 59.902 37.500 0.00 0.00 38.58 2.43
4567 9176 5.298276 AGTCAAAACCAAGATGAGCGTTTTA 59.702 36.000 0.00 0.00 36.54 1.52
4568 9177 5.398416 GTCAAAACCAAGATGAGCGTTTTAC 59.602 40.000 0.00 0.00 36.54 2.01
4569 9178 5.066634 TCAAAACCAAGATGAGCGTTTTACA 59.933 36.000 0.00 0.00 36.54 2.41
4570 9179 4.749245 AACCAAGATGAGCGTTTTACAG 57.251 40.909 0.00 0.00 0.00 2.74
4571 9180 3.074412 ACCAAGATGAGCGTTTTACAGG 58.926 45.455 0.00 0.00 0.00 4.00
4572 9181 3.074412 CCAAGATGAGCGTTTTACAGGT 58.926 45.455 0.00 0.00 0.00 4.00
4573 9182 3.502211 CCAAGATGAGCGTTTTACAGGTT 59.498 43.478 0.00 0.00 0.00 3.50
4574 9183 4.693566 CCAAGATGAGCGTTTTACAGGTTA 59.306 41.667 0.00 0.00 0.00 2.85
4575 9184 5.390567 CCAAGATGAGCGTTTTACAGGTTAC 60.391 44.000 0.00 0.00 0.00 2.50
4576 9185 4.251268 AGATGAGCGTTTTACAGGTTACC 58.749 43.478 0.00 0.00 0.00 2.85
4577 9186 3.472283 TGAGCGTTTTACAGGTTACCA 57.528 42.857 3.51 0.00 0.00 3.25
4578 9187 4.010667 TGAGCGTTTTACAGGTTACCAT 57.989 40.909 3.51 0.00 0.00 3.55
4579 9188 4.391155 TGAGCGTTTTACAGGTTACCATT 58.609 39.130 3.51 0.00 0.00 3.16
4580 9189 4.214545 TGAGCGTTTTACAGGTTACCATTG 59.785 41.667 3.51 0.00 0.00 2.82
4581 9190 4.139038 AGCGTTTTACAGGTTACCATTGT 58.861 39.130 3.51 2.60 0.00 2.71
4582 9191 4.581409 AGCGTTTTACAGGTTACCATTGTT 59.419 37.500 3.51 0.00 0.00 2.83
4583 9192 5.068067 AGCGTTTTACAGGTTACCATTGTTT 59.932 36.000 3.51 0.00 0.00 2.83
4584 9193 5.749588 GCGTTTTACAGGTTACCATTGTTTT 59.250 36.000 3.51 0.00 0.00 2.43
4585 9194 6.256104 GCGTTTTACAGGTTACCATTGTTTTT 59.744 34.615 3.51 0.00 0.00 1.94
4586 9195 7.434602 GCGTTTTACAGGTTACCATTGTTTTTA 59.565 33.333 3.51 0.00 0.00 1.52
4587 9196 8.744923 CGTTTTACAGGTTACCATTGTTTTTAC 58.255 33.333 3.51 0.00 0.00 2.01
4588 9197 9.806203 GTTTTACAGGTTACCATTGTTTTTACT 57.194 29.630 3.51 0.00 0.00 2.24
4590 9199 6.644248 ACAGGTTACCATTGTTTTTACTCC 57.356 37.500 3.51 0.00 0.00 3.85
4591 9200 6.370453 ACAGGTTACCATTGTTTTTACTCCT 58.630 36.000 3.51 0.00 0.00 3.69
4592 9201 7.519927 ACAGGTTACCATTGTTTTTACTCCTA 58.480 34.615 3.51 0.00 0.00 2.94
4672 9281 9.826574 ACTTGTTGTACTTACTGTGAGATAAAA 57.173 29.630 6.59 0.00 0.00 1.52
4727 9336 3.411517 CCATTCAGGAGGCCCGGT 61.412 66.667 0.00 0.00 41.22 5.28
4792 9401 1.699634 CTCCTCCCAAGGTGTTCAGAA 59.300 52.381 0.00 0.00 43.82 3.02
4867 9476 1.196104 TCGGAACCGACCCCAATTCT 61.196 55.000 12.04 0.00 44.01 2.40
4908 9517 6.294397 CCAGTGAAAATAGCAAAGAAGAGCTT 60.294 38.462 0.00 0.00 42.05 3.74
4911 9520 5.769662 TGAAAATAGCAAAGAAGAGCTTGGA 59.230 36.000 0.00 0.00 42.05 3.53
5085 9694 3.009584 ACACCATTCTTCTCCCTTCTTCC 59.990 47.826 0.00 0.00 0.00 3.46
5090 9699 2.269940 TCTTCTCCCTTCTTCCCCTTG 58.730 52.381 0.00 0.00 0.00 3.61
5093 9702 1.705186 TCTCCCTTCTTCCCCTTGTTG 59.295 52.381 0.00 0.00 0.00 3.33
5094 9703 1.425448 CTCCCTTCTTCCCCTTGTTGT 59.575 52.381 0.00 0.00 0.00 3.32
5095 9704 1.856920 TCCCTTCTTCCCCTTGTTGTT 59.143 47.619 0.00 0.00 0.00 2.83
5096 9705 1.963515 CCCTTCTTCCCCTTGTTGTTG 59.036 52.381 0.00 0.00 0.00 3.33
5423 10040 1.411977 CTGCCTCTCTGGTCACATAGG 59.588 57.143 0.00 0.00 38.35 2.57
5551 10168 6.577427 CGCTGTTTAGTAAAATCAGAACAACC 59.423 38.462 14.37 0.00 31.17 3.77
5650 10276 1.526986 CCGCATTTCGACATCGTGAAC 60.527 52.381 0.54 0.00 41.67 3.18
5670 10426 4.162096 ACGTCGGACAATCTATATCTGC 57.838 45.455 9.10 0.00 0.00 4.26
5817 10573 0.036765 TGGCGTGGTACAAGTCCATC 60.037 55.000 0.00 0.00 42.93 3.51
5820 10576 1.337823 GCGTGGTACAAGTCCATCAGT 60.338 52.381 0.00 0.00 44.16 3.41
5869 10625 1.269465 TGCAGTAGATCATGCGCTCTC 60.269 52.381 9.73 0.00 45.54 3.20
6192 14318 1.419107 GAAAGAACCGGATCGCGTCC 61.419 60.000 9.46 11.79 44.10 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.590279 TCAAGGTTTTTCATCCTCGATTTTAC 58.410 34.615 0.00 0.00 33.09 2.01
1 2 7.753309 TCAAGGTTTTTCATCCTCGATTTTA 57.247 32.000 0.00 0.00 33.09 1.52
4 5 6.840780 ATTCAAGGTTTTTCATCCTCGATT 57.159 33.333 0.00 0.00 33.09 3.34
5 6 6.209391 ACAATTCAAGGTTTTTCATCCTCGAT 59.791 34.615 0.00 0.00 33.09 3.59
6 7 5.534654 ACAATTCAAGGTTTTTCATCCTCGA 59.465 36.000 0.00 0.00 33.09 4.04
7 8 5.630680 CACAATTCAAGGTTTTTCATCCTCG 59.369 40.000 0.00 0.00 33.09 4.63
8 9 6.748132 TCACAATTCAAGGTTTTTCATCCTC 58.252 36.000 0.00 0.00 33.09 3.71
9 10 6.729690 TCACAATTCAAGGTTTTTCATCCT 57.270 33.333 0.00 0.00 35.34 3.24
10 11 5.406477 GCTCACAATTCAAGGTTTTTCATCC 59.594 40.000 0.00 0.00 0.00 3.51
11 12 6.145048 CAGCTCACAATTCAAGGTTTTTCATC 59.855 38.462 0.00 0.00 0.00 2.92
12 13 5.987347 CAGCTCACAATTCAAGGTTTTTCAT 59.013 36.000 0.00 0.00 0.00 2.57
13 14 5.350633 CAGCTCACAATTCAAGGTTTTTCA 58.649 37.500 0.00 0.00 0.00 2.69
14 15 4.209911 GCAGCTCACAATTCAAGGTTTTTC 59.790 41.667 0.00 0.00 0.00 2.29
15 16 4.122046 GCAGCTCACAATTCAAGGTTTTT 58.878 39.130 0.00 0.00 0.00 1.94
16 17 3.721035 GCAGCTCACAATTCAAGGTTTT 58.279 40.909 0.00 0.00 0.00 2.43
17 18 2.287788 CGCAGCTCACAATTCAAGGTTT 60.288 45.455 0.00 0.00 0.00 3.27
18 19 1.267806 CGCAGCTCACAATTCAAGGTT 59.732 47.619 0.00 0.00 0.00 3.50
19 20 0.877071 CGCAGCTCACAATTCAAGGT 59.123 50.000 0.00 0.00 0.00 3.50
20 21 3.689224 CGCAGCTCACAATTCAAGG 57.311 52.632 0.00 0.00 0.00 3.61
42 43 8.490311 TCCTCAAAGTCCATAATTTTGGTTTTT 58.510 29.630 13.78 12.08 38.01 1.94
43 44 8.028652 TCCTCAAAGTCCATAATTTTGGTTTT 57.971 30.769 13.78 12.37 38.01 2.43
44 45 7.610580 TCCTCAAAGTCCATAATTTTGGTTT 57.389 32.000 13.78 6.32 38.01 3.27
45 46 7.454380 TCATCCTCAAAGTCCATAATTTTGGTT 59.546 33.333 13.78 0.64 38.01 3.67
46 47 6.953520 TCATCCTCAAAGTCCATAATTTTGGT 59.046 34.615 13.78 0.00 38.01 3.67
47 48 7.408756 TCATCCTCAAAGTCCATAATTTTGG 57.591 36.000 8.53 8.53 38.18 3.28
48 49 8.306038 TGTTCATCCTCAAAGTCCATAATTTTG 58.694 33.333 0.00 0.00 34.07 2.44
49 50 8.421249 TGTTCATCCTCAAAGTCCATAATTTT 57.579 30.769 0.00 0.00 0.00 1.82
50 51 8.421249 TTGTTCATCCTCAAAGTCCATAATTT 57.579 30.769 0.00 0.00 0.00 1.82
51 52 8.599624 ATTGTTCATCCTCAAAGTCCATAATT 57.400 30.769 0.00 0.00 0.00 1.40
52 53 9.872684 ATATTGTTCATCCTCAAAGTCCATAAT 57.127 29.630 0.00 0.00 0.00 1.28
53 54 9.123902 CATATTGTTCATCCTCAAAGTCCATAA 57.876 33.333 0.00 0.00 0.00 1.90
54 55 8.274322 ACATATTGTTCATCCTCAAAGTCCATA 58.726 33.333 0.00 0.00 0.00 2.74
55 56 7.121382 ACATATTGTTCATCCTCAAAGTCCAT 58.879 34.615 0.00 0.00 0.00 3.41
56 57 6.484288 ACATATTGTTCATCCTCAAAGTCCA 58.516 36.000 0.00 0.00 0.00 4.02
57 58 8.562892 CATACATATTGTTCATCCTCAAAGTCC 58.437 37.037 0.00 0.00 0.00 3.85
58 59 8.072567 GCATACATATTGTTCATCCTCAAAGTC 58.927 37.037 0.00 0.00 0.00 3.01
59 60 7.776969 AGCATACATATTGTTCATCCTCAAAGT 59.223 33.333 0.00 0.00 0.00 2.66
60 61 8.162878 AGCATACATATTGTTCATCCTCAAAG 57.837 34.615 0.00 0.00 0.00 2.77
61 62 9.625747 TTAGCATACATATTGTTCATCCTCAAA 57.374 29.630 0.00 0.00 0.00 2.69
62 63 9.625747 TTTAGCATACATATTGTTCATCCTCAA 57.374 29.630 0.00 0.00 0.00 3.02
63 64 9.625747 TTTTAGCATACATATTGTTCATCCTCA 57.374 29.630 0.00 0.00 0.00 3.86
66 67 9.185192 GCTTTTTAGCATACATATTGTTCATCC 57.815 33.333 0.00 0.00 34.41 3.51
67 68 9.185192 GGCTTTTTAGCATACATATTGTTCATC 57.815 33.333 0.00 0.00 36.33 2.92
68 69 8.694540 TGGCTTTTTAGCATACATATTGTTCAT 58.305 29.630 0.00 0.00 36.33 2.57
69 70 7.973388 GTGGCTTTTTAGCATACATATTGTTCA 59.027 33.333 0.00 0.00 36.33 3.18
70 71 7.973388 TGTGGCTTTTTAGCATACATATTGTTC 59.027 33.333 0.00 0.00 36.33 3.18
71 72 7.835822 TGTGGCTTTTTAGCATACATATTGTT 58.164 30.769 0.00 0.00 36.33 2.83
72 73 7.403312 TGTGGCTTTTTAGCATACATATTGT 57.597 32.000 0.00 0.00 36.33 2.71
78 79 8.792633 GGATAATATGTGGCTTTTTAGCATACA 58.207 33.333 8.28 8.28 37.64 2.29
79 80 9.014297 AGGATAATATGTGGCTTTTTAGCATAC 57.986 33.333 0.00 0.00 36.33 2.39
80 81 9.586732 AAGGATAATATGTGGCTTTTTAGCATA 57.413 29.630 0.00 0.00 36.33 3.14
81 82 8.482852 AAGGATAATATGTGGCTTTTTAGCAT 57.517 30.769 0.00 0.00 36.33 3.79
82 83 7.896383 AAGGATAATATGTGGCTTTTTAGCA 57.104 32.000 0.00 0.00 36.33 3.49
83 84 9.599866 AAAAAGGATAATATGTGGCTTTTTAGC 57.400 29.630 0.00 0.00 33.03 3.09
86 87 9.218440 CACAAAAAGGATAATATGTGGCTTTTT 57.782 29.630 0.00 0.00 35.67 1.94
87 88 7.334171 GCACAAAAAGGATAATATGTGGCTTTT 59.666 33.333 5.93 0.00 38.78 2.27
88 89 6.818142 GCACAAAAAGGATAATATGTGGCTTT 59.182 34.615 5.93 0.00 38.78 3.51
89 90 6.070881 TGCACAAAAAGGATAATATGTGGCTT 60.071 34.615 5.93 0.00 38.78 4.35
90 91 5.421693 TGCACAAAAAGGATAATATGTGGCT 59.578 36.000 5.93 0.00 38.78 4.75
91 92 5.659463 TGCACAAAAAGGATAATATGTGGC 58.341 37.500 5.93 0.00 38.78 5.01
92 93 5.750067 GCTGCACAAAAAGGATAATATGTGG 59.250 40.000 5.93 0.00 38.78 4.17
93 94 6.567050 AGCTGCACAAAAAGGATAATATGTG 58.433 36.000 1.02 0.00 40.72 3.21
94 95 6.604795 AGAGCTGCACAAAAAGGATAATATGT 59.395 34.615 1.02 0.00 0.00 2.29
95 96 7.035840 AGAGCTGCACAAAAAGGATAATATG 57.964 36.000 1.02 0.00 0.00 1.78
96 97 6.830324 TGAGAGCTGCACAAAAAGGATAATAT 59.170 34.615 1.02 0.00 0.00 1.28
97 98 6.179756 TGAGAGCTGCACAAAAAGGATAATA 58.820 36.000 1.02 0.00 0.00 0.98
98 99 5.012239 TGAGAGCTGCACAAAAAGGATAAT 58.988 37.500 1.02 0.00 0.00 1.28
99 100 4.397420 TGAGAGCTGCACAAAAAGGATAA 58.603 39.130 1.02 0.00 0.00 1.75
100 101 4.019792 TGAGAGCTGCACAAAAAGGATA 57.980 40.909 1.02 0.00 0.00 2.59
101 102 2.867624 TGAGAGCTGCACAAAAAGGAT 58.132 42.857 1.02 0.00 0.00 3.24
102 103 2.346766 TGAGAGCTGCACAAAAAGGA 57.653 45.000 1.02 0.00 0.00 3.36
103 104 3.655276 AATGAGAGCTGCACAAAAAGG 57.345 42.857 1.02 0.00 0.00 3.11
104 105 5.978934 AAAAATGAGAGCTGCACAAAAAG 57.021 34.783 1.02 0.00 0.00 2.27
105 106 6.019961 CGTTAAAAATGAGAGCTGCACAAAAA 60.020 34.615 1.02 0.00 0.00 1.94
106 107 5.458452 CGTTAAAAATGAGAGCTGCACAAAA 59.542 36.000 1.02 0.00 0.00 2.44
107 108 4.975502 CGTTAAAAATGAGAGCTGCACAAA 59.024 37.500 1.02 0.00 0.00 2.83
108 109 4.036262 ACGTTAAAAATGAGAGCTGCACAA 59.964 37.500 1.02 0.00 0.00 3.33
109 110 3.563808 ACGTTAAAAATGAGAGCTGCACA 59.436 39.130 1.02 0.00 0.00 4.57
110 111 4.147219 ACGTTAAAAATGAGAGCTGCAC 57.853 40.909 1.02 0.00 0.00 4.57
111 112 6.494893 AATACGTTAAAAATGAGAGCTGCA 57.505 33.333 1.02 0.00 0.00 4.41
112 113 7.796958 AAAATACGTTAAAAATGAGAGCTGC 57.203 32.000 0.00 0.00 0.00 5.25
113 114 9.393249 TCAAAAATACGTTAAAAATGAGAGCTG 57.607 29.630 0.00 0.00 0.00 4.24
114 115 9.394477 GTCAAAAATACGTTAAAAATGAGAGCT 57.606 29.630 0.00 0.00 0.00 4.09
115 116 8.635983 GGTCAAAAATACGTTAAAAATGAGAGC 58.364 33.333 0.00 0.00 0.00 4.09
116 117 9.893305 AGGTCAAAAATACGTTAAAAATGAGAG 57.107 29.630 0.00 0.00 0.00 3.20
134 135 9.877178 ACATGTGTGTAAATTTTTAGGTCAAAA 57.123 25.926 0.00 0.00 36.63 2.44
136 137 9.953697 GTACATGTGTGTAAATTTTTAGGTCAA 57.046 29.630 9.11 0.00 42.18 3.18
137 138 9.121658 TGTACATGTGTGTAAATTTTTAGGTCA 57.878 29.630 9.11 0.00 42.18 4.02
147 148 9.109393 GGAGACATAATGTACATGTGTGTAAAT 57.891 33.333 24.02 12.64 42.18 1.40
148 149 8.097662 TGGAGACATAATGTACATGTGTGTAAA 58.902 33.333 24.02 13.19 37.80 2.01
149 150 7.616313 TGGAGACATAATGTACATGTGTGTAA 58.384 34.615 24.02 13.44 37.80 2.41
150 151 7.123547 TCTGGAGACATAATGTACATGTGTGTA 59.876 37.037 24.02 8.77 41.51 2.90
151 152 6.048732 TGGAGACATAATGTACATGTGTGT 57.951 37.500 24.02 21.18 36.76 3.72
152 153 6.340522 TCTGGAGACATAATGTACATGTGTG 58.659 40.000 24.02 17.86 41.51 3.82
153 154 6.544928 TCTGGAGACATAATGTACATGTGT 57.455 37.500 20.85 20.85 41.51 3.72
225 226 5.600484 TGGAGGCCTTAATTTGAAAACTTCA 59.400 36.000 6.77 0.00 38.04 3.02
226 227 6.096673 TGGAGGCCTTAATTTGAAAACTTC 57.903 37.500 6.77 0.00 0.00 3.01
227 228 6.466812 CATGGAGGCCTTAATTTGAAAACTT 58.533 36.000 6.77 0.00 0.00 2.66
228 229 5.046376 CCATGGAGGCCTTAATTTGAAAACT 60.046 40.000 6.77 0.00 0.00 2.66
229 230 5.046663 TCCATGGAGGCCTTAATTTGAAAAC 60.047 40.000 11.44 0.00 37.29 2.43
230 231 5.090139 TCCATGGAGGCCTTAATTTGAAAA 58.910 37.500 11.44 0.00 37.29 2.29
231 232 4.682563 TCCATGGAGGCCTTAATTTGAAA 58.317 39.130 11.44 0.00 37.29 2.69
232 233 4.280819 CTCCATGGAGGCCTTAATTTGAA 58.719 43.478 31.14 0.00 38.51 2.69
233 234 3.902218 CTCCATGGAGGCCTTAATTTGA 58.098 45.455 31.14 2.38 38.51 2.69
234 235 2.363359 GCTCCATGGAGGCCTTAATTTG 59.637 50.000 36.92 13.51 42.19 2.32
235 236 2.245806 AGCTCCATGGAGGCCTTAATTT 59.754 45.455 36.92 13.14 42.19 1.82
236 237 1.855599 AGCTCCATGGAGGCCTTAATT 59.144 47.619 36.92 13.75 42.19 1.40
237 238 1.144503 CAGCTCCATGGAGGCCTTAAT 59.855 52.381 36.92 14.36 42.19 1.40
238 239 0.548031 CAGCTCCATGGAGGCCTTAA 59.452 55.000 36.92 4.58 42.19 1.85
239 240 1.987807 GCAGCTCCATGGAGGCCTTA 61.988 60.000 36.92 5.36 42.19 2.69
240 241 3.004951 CAGCTCCATGGAGGCCTT 58.995 61.111 36.92 15.60 42.19 4.35
241 242 3.806667 GCAGCTCCATGGAGGCCT 61.807 66.667 36.92 25.64 42.19 5.19
242 243 4.891037 GGCAGCTCCATGGAGGCC 62.891 72.222 36.92 34.93 40.47 5.19
243 244 4.119363 TGGCAGCTCCATGGAGGC 62.119 66.667 36.92 31.32 40.72 4.70
251 252 1.131315 GAACTCGAAAATGGCAGCTCC 59.869 52.381 0.00 0.00 0.00 4.70
252 253 2.079925 AGAACTCGAAAATGGCAGCTC 58.920 47.619 0.00 0.00 0.00 4.09
253 254 2.079925 GAGAACTCGAAAATGGCAGCT 58.920 47.619 0.00 0.00 0.00 4.24
254 255 1.131315 GGAGAACTCGAAAATGGCAGC 59.869 52.381 0.00 0.00 0.00 5.25
255 256 1.394917 CGGAGAACTCGAAAATGGCAG 59.605 52.381 0.00 0.00 0.00 4.85
256 257 1.438651 CGGAGAACTCGAAAATGGCA 58.561 50.000 0.00 0.00 0.00 4.92
257 258 0.097150 GCGGAGAACTCGAAAATGGC 59.903 55.000 0.00 0.00 0.00 4.40
258 259 1.726853 AGCGGAGAACTCGAAAATGG 58.273 50.000 0.00 0.00 0.00 3.16
259 260 4.921470 TTTAGCGGAGAACTCGAAAATG 57.079 40.909 0.00 0.00 0.00 2.32
260 261 5.163754 CCATTTTAGCGGAGAACTCGAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
261 262 4.153475 CCATTTTAGCGGAGAACTCGAAAA 59.847 41.667 0.00 0.00 0.00 2.29
262 263 3.682858 CCATTTTAGCGGAGAACTCGAAA 59.317 43.478 0.00 0.00 0.00 3.46
263 264 3.259064 CCATTTTAGCGGAGAACTCGAA 58.741 45.455 0.00 0.00 0.00 3.71
264 265 2.232941 ACCATTTTAGCGGAGAACTCGA 59.767 45.455 0.00 0.00 0.00 4.04
265 266 2.618053 ACCATTTTAGCGGAGAACTCG 58.382 47.619 0.00 0.00 0.00 4.18
266 267 6.278363 TGTATACCATTTTAGCGGAGAACTC 58.722 40.000 0.00 0.00 0.00 3.01
267 268 6.229936 TGTATACCATTTTAGCGGAGAACT 57.770 37.500 0.00 0.00 0.00 3.01
268 269 6.913873 TTGTATACCATTTTAGCGGAGAAC 57.086 37.500 0.00 0.00 0.00 3.01
269 270 8.402472 CAATTTGTATACCATTTTAGCGGAGAA 58.598 33.333 0.00 0.00 0.00 2.87
270 271 7.554835 ACAATTTGTATACCATTTTAGCGGAGA 59.445 33.333 0.00 0.00 0.00 3.71
271 272 7.643764 CACAATTTGTATACCATTTTAGCGGAG 59.356 37.037 0.86 0.00 0.00 4.63
272 273 7.337184 TCACAATTTGTATACCATTTTAGCGGA 59.663 33.333 0.86 0.00 0.00 5.54
273 274 7.476667 TCACAATTTGTATACCATTTTAGCGG 58.523 34.615 0.86 0.00 0.00 5.52
274 275 8.903570 TTCACAATTTGTATACCATTTTAGCG 57.096 30.769 0.86 0.00 0.00 4.26
275 276 9.301153 CCTTCACAATTTGTATACCATTTTAGC 57.699 33.333 0.86 0.00 0.00 3.09
280 281 9.927668 CTTTTCCTTCACAATTTGTATACCATT 57.072 29.630 0.86 0.00 0.00 3.16
281 282 9.308000 TCTTTTCCTTCACAATTTGTATACCAT 57.692 29.630 0.86 0.00 0.00 3.55
282 283 8.698973 TCTTTTCCTTCACAATTTGTATACCA 57.301 30.769 0.86 0.00 0.00 3.25
283 284 9.573133 CATCTTTTCCTTCACAATTTGTATACC 57.427 33.333 0.86 0.00 0.00 2.73
296 297 3.909995 TGGAGAGACCATCTTTTCCTTCA 59.090 43.478 10.08 0.00 44.64 3.02
348 351 5.265350 TGTGCTAATGTACCGCTTATACA 57.735 39.130 0.00 0.00 36.98 2.29
358 361 8.648557 TCTCTTGTAATCATGTGCTAATGTAC 57.351 34.615 0.00 0.00 0.00 2.90
413 416 6.861065 ATGAAAAACTATTCACGAGTGTGT 57.139 33.333 2.97 0.00 46.49 3.72
435 438 6.327887 GGGTACTCTTAAGATCTTCCAGGAAT 59.672 42.308 12.24 0.00 0.00 3.01
438 441 4.038162 CGGGTACTCTTAAGATCTTCCAGG 59.962 50.000 12.24 4.24 0.00 4.45
440 443 3.383825 GCGGGTACTCTTAAGATCTTCCA 59.616 47.826 12.24 0.00 0.00 3.53
474 925 5.130145 CACACATCCCTCTTAAGATCTTCCT 59.870 44.000 12.24 0.00 0.00 3.36
475 926 5.104735 ACACACATCCCTCTTAAGATCTTCC 60.105 44.000 12.24 0.00 0.00 3.46
476 927 5.814705 CACACACATCCCTCTTAAGATCTTC 59.185 44.000 12.24 0.00 0.00 2.87
478 929 4.383552 GCACACACATCCCTCTTAAGATCT 60.384 45.833 5.44 0.00 0.00 2.75
479 930 3.873952 GCACACACATCCCTCTTAAGATC 59.126 47.826 5.44 0.00 0.00 2.75
480 931 3.679917 CGCACACACATCCCTCTTAAGAT 60.680 47.826 5.44 0.00 0.00 2.40
481 932 2.353704 CGCACACACATCCCTCTTAAGA 60.354 50.000 4.81 4.81 0.00 2.10
482 933 2.002586 CGCACACACATCCCTCTTAAG 58.997 52.381 0.00 0.00 0.00 1.85
483 934 1.346395 ACGCACACACATCCCTCTTAA 59.654 47.619 0.00 0.00 0.00 1.85
484 935 0.973632 ACGCACACACATCCCTCTTA 59.026 50.000 0.00 0.00 0.00 2.10
485 936 0.603707 CACGCACACACATCCCTCTT 60.604 55.000 0.00 0.00 0.00 2.85
487 938 1.301716 ACACGCACACACATCCCTC 60.302 57.895 0.00 0.00 0.00 4.30
488 939 1.597854 CACACGCACACACATCCCT 60.598 57.895 0.00 0.00 0.00 4.20
490 941 1.279539 CACACACGCACACACATCC 59.720 57.895 0.00 0.00 0.00 3.51
491 942 0.316114 CACACACACGCACACACATC 60.316 55.000 0.00 0.00 0.00 3.06
492 943 1.024046 ACACACACACGCACACACAT 61.024 50.000 0.00 0.00 0.00 3.21
494 945 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
497 948 1.669437 ACACACACACACACGCACA 60.669 52.632 0.00 0.00 0.00 4.57
498 949 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
500 951 0.167033 TTTCACACACACACACACGC 59.833 50.000 0.00 0.00 0.00 5.34
501 952 1.463056 AGTTTCACACACACACACACG 59.537 47.619 0.00 0.00 0.00 4.49
502 953 3.552604 AAGTTTCACACACACACACAC 57.447 42.857 0.00 0.00 0.00 3.82
505 956 7.912773 CACATTATTAAGTTTCACACACACACA 59.087 33.333 0.00 0.00 0.00 3.72
536 1001 2.598099 TACCGTGCAGACACCGGA 60.598 61.111 18.43 1.01 44.40 5.14
537 1002 2.126071 CTACCGTGCAGACACCGG 60.126 66.667 10.84 10.84 44.40 5.28
550 1015 3.264897 CGTGCGGCAGATGCTACC 61.265 66.667 1.18 0.00 41.70 3.18
562 1027 4.337060 TGGTCGGTCAGTCGTGCG 62.337 66.667 0.00 0.00 0.00 5.34
580 1045 2.586079 CACGCCTATGGACCGCTG 60.586 66.667 0.00 0.00 0.00 5.18
889 1354 2.692741 GGTGGAGGAGGGAAGGGG 60.693 72.222 0.00 0.00 0.00 4.79
927 1416 2.302733 AGAAAATGGTGGGATGTTTGGC 59.697 45.455 0.00 0.00 0.00 4.52
1259 1760 4.821589 GGAACGCCTCCAGCTCGG 62.822 72.222 0.00 0.00 44.67 4.63
1463 1964 1.134551 GGTAAGCAGAGGAAGGCTGAG 60.135 57.143 0.00 0.00 40.93 3.35
1472 1973 0.389948 GTCACGGTGGTAAGCAGAGG 60.390 60.000 8.50 0.00 0.00 3.69
1510 2021 1.401931 CGTCAGAGCCAAGGCAATTTG 60.402 52.381 14.40 5.92 44.88 2.32
1528 2039 2.455674 TTGATACTGCAACAGAGCGT 57.544 45.000 0.78 0.00 37.31 5.07
1529 2040 4.115516 AGTATTGATACTGCAACAGAGCG 58.884 43.478 0.78 0.00 41.77 5.03
1559 2070 3.817084 TCTCCACAGAAGCAACTTTCATG 59.183 43.478 0.00 0.00 0.00 3.07
1597 2108 9.654663 AGTAGTAAGTATTGTTGATCTTCCAAC 57.345 33.333 0.00 0.00 44.84 3.77
1646 2157 4.038282 TGAGCAAAACAAGCATCTTCACAT 59.962 37.500 0.00 0.00 0.00 3.21
1651 2162 4.365723 CAAGTGAGCAAAACAAGCATCTT 58.634 39.130 0.00 0.00 0.00 2.40
1670 2188 4.464069 AGAGAGAAACCGATCTTCCAAG 57.536 45.455 0.00 0.00 0.00 3.61
1700 2218 0.035439 TGTCCTCGGAGAAATTGCCC 60.035 55.000 6.58 0.00 34.09 5.36
1764 2282 2.200373 ATGTTAGCCTTGCGGTTTCT 57.800 45.000 0.00 0.00 0.00 2.52
1805 2323 3.000819 CCCGATATAGCCCGCCCA 61.001 66.667 0.00 0.00 0.00 5.36
1811 2329 2.815647 GCGCTGCCCGATATAGCC 60.816 66.667 0.00 0.00 40.02 3.93
1829 2347 3.491619 CGACCAAATCACGGATCATCTCT 60.492 47.826 0.00 0.00 0.00 3.10
1958 6330 5.409643 AACATGCATTAGCGTAAGATGAC 57.590 39.130 0.00 0.00 46.23 3.06
2031 6405 3.463048 AGGATCAGATTGCAAAACCCT 57.537 42.857 1.71 1.82 0.00 4.34
2071 6445 9.207868 AGATCCTAGCTATTTCCCTGTATTATC 57.792 37.037 0.00 0.00 0.00 1.75
2114 6488 3.993736 TGTCCACTATGATCACACGTTTG 59.006 43.478 0.00 0.00 0.00 2.93
2177 6551 2.969238 CTAGAGCGCCCAATGCCG 60.969 66.667 2.29 0.00 36.24 5.69
2241 6615 4.245660 CAAAGACACTAGAAGATTCCGCA 58.754 43.478 0.00 0.00 0.00 5.69
2242 6616 4.246458 ACAAAGACACTAGAAGATTCCGC 58.754 43.478 0.00 0.00 0.00 5.54
2243 6617 6.787085 AAACAAAGACACTAGAAGATTCCG 57.213 37.500 0.00 0.00 0.00 4.30
2261 6635 9.226606 AGCATGCACTAGTAAAGTATTAAACAA 57.773 29.630 21.98 0.00 35.76 2.83
2262 6636 8.786826 AGCATGCACTAGTAAAGTATTAAACA 57.213 30.769 21.98 0.00 35.76 2.83
2263 6637 8.056571 CGAGCATGCACTAGTAAAGTATTAAAC 58.943 37.037 21.98 0.00 35.76 2.01
2264 6638 7.977293 TCGAGCATGCACTAGTAAAGTATTAAA 59.023 33.333 21.98 0.00 35.76 1.52
2266 6640 7.034685 TCGAGCATGCACTAGTAAAGTATTA 57.965 36.000 21.98 0.00 35.76 0.98
2267 6641 5.902681 TCGAGCATGCACTAGTAAAGTATT 58.097 37.500 21.98 0.00 35.76 1.89
2269 6643 4.976224 TCGAGCATGCACTAGTAAAGTA 57.024 40.909 21.98 0.00 35.76 2.24
2270 6644 3.868757 TCGAGCATGCACTAGTAAAGT 57.131 42.857 21.98 0.00 39.81 2.66
2363 6768 6.961360 AGTTCTGTACCAATCTCATCGATA 57.039 37.500 0.00 0.00 0.00 2.92
2609 7014 2.787994 AGCTTCAGGATCAACTGGTTG 58.212 47.619 7.10 7.10 41.71 3.77
2610 7015 3.152341 CAAGCTTCAGGATCAACTGGTT 58.848 45.455 0.00 0.00 38.98 3.67
2611 7016 2.107204 ACAAGCTTCAGGATCAACTGGT 59.893 45.455 0.00 0.00 38.98 4.00
2612 7017 2.746362 GACAAGCTTCAGGATCAACTGG 59.254 50.000 0.00 0.00 38.98 4.00
2613 7018 3.405831 TGACAAGCTTCAGGATCAACTG 58.594 45.455 0.00 0.00 39.84 3.16
2614 7019 3.777106 TGACAAGCTTCAGGATCAACT 57.223 42.857 0.00 0.00 0.00 3.16
2761 7168 5.248640 AGATACACTGATTTGTTCACCCAG 58.751 41.667 0.00 0.00 0.00 4.45
2927 7334 9.582648 AAATAACTACAGGTCCACATTTTACTT 57.417 29.630 0.00 0.00 0.00 2.24
3872 8280 1.277557 AGCTGAGGTGCTACAAGGAAG 59.722 52.381 0.00 0.00 42.10 3.46
4134 8544 3.473367 CTTCATTTCAGAACTTGACGCG 58.527 45.455 3.53 3.53 34.94 6.01
4380 8790 5.762279 TCTCCTTCCAAAACTTTAGGTTGT 58.238 37.500 0.00 0.00 38.29 3.32
4404 8814 6.014755 TCGGAGCATCATCTTCAATCTCTATT 60.015 38.462 0.00 0.00 36.25 1.73
4481 8891 9.787435 AGTGGTACTGTTTCACAAAATATAGAA 57.213 29.630 13.11 0.00 34.17 2.10
4489 9095 6.094325 CCTGTTAAGTGGTACTGTTTCACAAA 59.906 38.462 13.11 6.50 34.17 2.83
4528 9137 7.453393 TGGTTTTGACTGTATTCTGAGAAGAT 58.547 34.615 0.00 0.00 0.00 2.40
4530 9139 7.442364 TCTTGGTTTTGACTGTATTCTGAGAAG 59.558 37.037 0.00 0.00 0.00 2.85
4531 9140 7.279615 TCTTGGTTTTGACTGTATTCTGAGAA 58.720 34.615 0.00 0.00 0.00 2.87
4537 9146 6.317857 GCTCATCTTGGTTTTGACTGTATTC 58.682 40.000 0.00 0.00 0.00 1.75
4539 9148 4.393062 CGCTCATCTTGGTTTTGACTGTAT 59.607 41.667 0.00 0.00 0.00 2.29
4541 9150 2.549754 CGCTCATCTTGGTTTTGACTGT 59.450 45.455 0.00 0.00 0.00 3.55
4544 9153 3.626028 AACGCTCATCTTGGTTTTGAC 57.374 42.857 0.00 0.00 0.00 3.18
4552 9161 4.749245 AACCTGTAAAACGCTCATCTTG 57.251 40.909 0.00 0.00 0.00 3.02
4554 9163 4.251268 GGTAACCTGTAAAACGCTCATCT 58.749 43.478 0.00 0.00 0.00 2.90
4555 9164 3.998341 TGGTAACCTGTAAAACGCTCATC 59.002 43.478 0.00 0.00 0.00 2.92
4556 9165 4.010667 TGGTAACCTGTAAAACGCTCAT 57.989 40.909 0.00 0.00 0.00 2.90
4557 9166 3.472283 TGGTAACCTGTAAAACGCTCA 57.528 42.857 0.00 0.00 0.00 4.26
4558 9167 4.214758 ACAATGGTAACCTGTAAAACGCTC 59.785 41.667 0.00 0.00 30.46 5.03
4559 9168 4.139038 ACAATGGTAACCTGTAAAACGCT 58.861 39.130 0.00 0.00 30.46 5.07
4560 9169 4.492791 ACAATGGTAACCTGTAAAACGC 57.507 40.909 0.00 0.00 30.46 4.84
4561 9170 7.758613 AAAAACAATGGTAACCTGTAAAACG 57.241 32.000 0.00 0.00 31.87 3.60
4562 9171 9.806203 AGTAAAAACAATGGTAACCTGTAAAAC 57.194 29.630 0.00 0.00 31.87 2.43
4564 9173 8.631797 GGAGTAAAAACAATGGTAACCTGTAAA 58.368 33.333 0.00 0.00 31.87 2.01
4565 9174 8.000127 AGGAGTAAAAACAATGGTAACCTGTAA 59.000 33.333 0.00 0.00 31.87 2.41
4566 9175 7.519927 AGGAGTAAAAACAATGGTAACCTGTA 58.480 34.615 0.00 0.00 31.87 2.74
4567 9176 6.370453 AGGAGTAAAAACAATGGTAACCTGT 58.630 36.000 0.00 0.00 33.38 4.00
4568 9177 6.894339 AGGAGTAAAAACAATGGTAACCTG 57.106 37.500 0.00 0.00 0.00 4.00
4569 9178 6.944290 GGTAGGAGTAAAAACAATGGTAACCT 59.056 38.462 0.00 0.00 0.00 3.50
4570 9179 6.128200 CGGTAGGAGTAAAAACAATGGTAACC 60.128 42.308 0.00 0.00 0.00 2.85
4571 9180 6.427853 ACGGTAGGAGTAAAAACAATGGTAAC 59.572 38.462 0.00 0.00 0.00 2.50
4572 9181 6.532826 ACGGTAGGAGTAAAAACAATGGTAA 58.467 36.000 0.00 0.00 0.00 2.85
4573 9182 6.112927 ACGGTAGGAGTAAAAACAATGGTA 57.887 37.500 0.00 0.00 0.00 3.25
4574 9183 4.976864 ACGGTAGGAGTAAAAACAATGGT 58.023 39.130 0.00 0.00 0.00 3.55
4575 9184 4.393990 GGACGGTAGGAGTAAAAACAATGG 59.606 45.833 0.00 0.00 0.00 3.16
4576 9185 5.243207 AGGACGGTAGGAGTAAAAACAATG 58.757 41.667 0.00 0.00 0.00 2.82
4577 9186 5.494390 AGGACGGTAGGAGTAAAAACAAT 57.506 39.130 0.00 0.00 0.00 2.71
4578 9187 4.961438 AGGACGGTAGGAGTAAAAACAA 57.039 40.909 0.00 0.00 0.00 2.83
4579 9188 4.590222 AGAAGGACGGTAGGAGTAAAAACA 59.410 41.667 0.00 0.00 0.00 2.83
4580 9189 4.928020 CAGAAGGACGGTAGGAGTAAAAAC 59.072 45.833 0.00 0.00 0.00 2.43
4581 9190 4.020839 CCAGAAGGACGGTAGGAGTAAAAA 60.021 45.833 0.00 0.00 36.89 1.94
4582 9191 3.512724 CCAGAAGGACGGTAGGAGTAAAA 59.487 47.826 0.00 0.00 36.89 1.52
4583 9192 3.094572 CCAGAAGGACGGTAGGAGTAAA 58.905 50.000 0.00 0.00 36.89 2.01
4584 9193 2.309755 TCCAGAAGGACGGTAGGAGTAA 59.690 50.000 0.00 0.00 39.61 2.24
4585 9194 1.918262 TCCAGAAGGACGGTAGGAGTA 59.082 52.381 0.00 0.00 39.61 2.59
4586 9195 0.702902 TCCAGAAGGACGGTAGGAGT 59.297 55.000 0.00 0.00 39.61 3.85
4587 9196 1.477295 GTTCCAGAAGGACGGTAGGAG 59.523 57.143 0.00 0.00 45.73 3.69
4588 9197 1.076677 AGTTCCAGAAGGACGGTAGGA 59.923 52.381 0.00 0.00 45.73 2.94
4589 9198 1.558233 AGTTCCAGAAGGACGGTAGG 58.442 55.000 0.00 0.00 45.73 3.18
4590 9199 3.679824 AAAGTTCCAGAAGGACGGTAG 57.320 47.619 0.00 0.00 45.73 3.18
4591 9200 5.070847 AGTTTAAAGTTCCAGAAGGACGGTA 59.929 40.000 0.00 0.00 45.73 4.02
4592 9201 4.132336 GTTTAAAGTTCCAGAAGGACGGT 58.868 43.478 0.00 0.00 45.73 4.83
4727 9336 7.271511 GGGATTACAATGTATTCAATTGCCAA 58.728 34.615 14.71 0.00 0.00 4.52
4867 9476 2.093288 CACTGGAAGAATCTGCAGCCTA 60.093 50.000 9.47 0.00 37.43 3.93
4908 9517 3.473647 CCTGAGCGCCCTGATCCA 61.474 66.667 2.29 0.00 29.76 3.41
5085 9694 3.658709 ACAACAACAACAACAACAAGGG 58.341 40.909 0.00 0.00 0.00 3.95
5090 9699 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5093 9702 5.387958 GCTGTACAACAACAACAACAACAAC 60.388 40.000 0.00 0.00 0.00 3.32
5094 9703 4.681942 GCTGTACAACAACAACAACAACAA 59.318 37.500 0.00 0.00 0.00 2.83
5095 9704 4.230657 GCTGTACAACAACAACAACAACA 58.769 39.130 0.00 0.00 0.00 3.33
5096 9705 3.299542 CGCTGTACAACAACAACAACAAC 59.700 43.478 0.00 0.00 0.00 3.32
5387 10004 5.560724 AGAGGCAGTGAGCTACATTTAAAA 58.439 37.500 0.00 0.00 44.79 1.52
5391 10008 2.836981 AGAGAGGCAGTGAGCTACATTT 59.163 45.455 0.00 0.00 44.79 2.32
5396 10013 0.040351 ACCAGAGAGGCAGTGAGCTA 59.960 55.000 0.00 0.00 44.79 3.32
5458 10075 8.098912 ACGGAGGTAGTATGTTGAACTAATTTT 58.901 33.333 0.00 0.00 31.48 1.82
5460 10077 7.179076 ACGGAGGTAGTATGTTGAACTAATT 57.821 36.000 0.00 0.00 31.48 1.40
5461 10078 6.786967 ACGGAGGTAGTATGTTGAACTAAT 57.213 37.500 0.00 0.00 31.48 1.73
5462 10079 6.658816 TGTACGGAGGTAGTATGTTGAACTAA 59.341 38.462 0.00 0.00 31.48 2.24
5463 10080 6.179756 TGTACGGAGGTAGTATGTTGAACTA 58.820 40.000 0.00 0.00 0.00 2.24
5464 10081 5.012239 TGTACGGAGGTAGTATGTTGAACT 58.988 41.667 0.00 0.00 0.00 3.01
5465 10082 5.314923 TGTACGGAGGTAGTATGTTGAAC 57.685 43.478 0.00 0.00 0.00 3.18
5466 10083 5.981088 TTGTACGGAGGTAGTATGTTGAA 57.019 39.130 0.00 0.00 0.00 2.69
5467 10084 7.643569 TTATTGTACGGAGGTAGTATGTTGA 57.356 36.000 0.00 0.00 0.00 3.18
5482 10099 7.640630 TGCAAAAACGGCTTATATTATTGTACG 59.359 33.333 0.00 0.00 0.00 3.67
5551 10168 2.030457 GCCATCTATTTGTCGTTCCACG 59.970 50.000 0.00 0.00 44.19 4.94
5562 10179 5.429435 ACAATTCCCCATTTGCCATCTATTT 59.571 36.000 0.00 0.00 0.00 1.40
5650 10276 4.407818 GAGCAGATATAGATTGTCCGACG 58.592 47.826 0.00 0.00 0.00 5.12
5670 10426 1.344763 GTGGTGGATTATCTCCCCGAG 59.655 57.143 0.00 0.00 44.23 4.63
5817 10573 1.633852 GCGAGAAGCTCAAGCCACTG 61.634 60.000 0.00 0.00 44.04 3.66
6092 14203 1.079681 CGGAAAACCGACGGGATGA 60.080 57.895 20.00 0.00 36.97 2.92
6192 14318 3.740128 CTGCGGGATGAAGGACGGG 62.740 68.421 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.