Multiple sequence alignment - TraesCS1A01G066700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G066700 chr1A 100.000 3535 0 0 588 4122 49096241 49099775 0.000000e+00 6529
1 TraesCS1A01G066700 chr1A 100.000 363 0 0 1 363 49095654 49096016 0.000000e+00 671
2 TraesCS1A01G066700 chr1A 86.501 363 44 3 1 361 585523708 585523349 1.070000e-105 394
3 TraesCS1A01G066700 chr1B 94.882 1524 61 8 2593 4112 69825786 69827296 0.000000e+00 2366
4 TraesCS1A01G066700 chr1B 94.562 1324 58 5 604 1918 69823781 69825099 0.000000e+00 2034
5 TraesCS1A01G066700 chr1B 96.184 629 21 3 1953 2579 69825177 69825804 0.000000e+00 1026
6 TraesCS1A01G066700 chr1B 93.151 365 22 2 1 363 560011905 560012268 2.180000e-147 532
7 TraesCS1A01G066700 chr1B 86.376 367 42 7 1 363 7604360 7603998 1.070000e-105 394
8 TraesCS1A01G066700 chr1D 94.336 1536 71 11 2600 4122 49587728 49589260 0.000000e+00 2340
9 TraesCS1A01G066700 chr1D 95.274 1333 47 6 601 1918 49585718 49587049 0.000000e+00 2098
10 TraesCS1A01G066700 chr1D 94.677 620 24 5 1953 2571 49587119 49587730 0.000000e+00 953
11 TraesCS1A01G066700 chr1D 84.211 133 20 1 2647 2779 49434684 49434815 1.200000e-25 128
12 TraesCS1A01G066700 chr7B 95.616 365 13 2 1 363 395616249 395616612 2.140000e-162 582
13 TraesCS1A01G066700 chr3D 93.352 361 21 2 1 359 541941964 541941605 7.850000e-147 531
14 TraesCS1A01G066700 chr2A 87.052 363 42 4 1 361 761956292 761956651 4.960000e-109 405
15 TraesCS1A01G066700 chr5A 85.950 363 46 4 1 361 547307747 547308106 2.320000e-102 383
16 TraesCS1A01G066700 chr4A 85.989 364 44 6 1 361 670826034 670826393 2.320000e-102 383
17 TraesCS1A01G066700 chr2B 85.950 363 46 3 1 361 744061078 744060719 2.320000e-102 383
18 TraesCS1A01G066700 chr6B 84.746 118 18 0 2660 2777 601870315 601870198 7.240000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G066700 chr1A 49095654 49099775 4121 False 3600.000000 6529 100.000000 1 4122 2 chr1A.!!$F1 4121
1 TraesCS1A01G066700 chr1B 69823781 69827296 3515 False 1808.666667 2366 95.209333 604 4112 3 chr1B.!!$F2 3508
2 TraesCS1A01G066700 chr1D 49585718 49589260 3542 False 1797.000000 2340 94.762333 601 4122 3 chr1D.!!$F2 3521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.028374 GTGGTGTTGTGGCGTTGTAC 59.972 55.000 0.0 0.0 0.0 2.90 F
210 211 0.031857 TGTGCGGTGCCTTTTGATTG 59.968 50.000 0.0 0.0 0.0 2.67 F
250 251 0.107654 GGTTTGGTCTGCTAGGCGAT 60.108 55.000 0.0 0.0 0.0 4.58 F
1018 1032 0.390124 CATGCATTGGGGAATTCGGG 59.610 55.000 0.0 0.0 0.0 5.14 F
2301 2363 1.354368 TCCCCCAACATCCTTCTTGAC 59.646 52.381 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1217 0.035152 TACAGGGACAAGCATGCCAG 60.035 55.000 15.66 9.93 0.00 4.85 R
1722 1739 1.154035 GCGGTTGCCTTGAAATCCG 60.154 57.895 0.00 0.00 40.72 4.18 R
1787 1804 1.604378 CCTACCAAGCTGACCAGGG 59.396 63.158 0.00 0.00 0.00 4.45 R
2869 2931 0.101759 CTGCAAGGAATCCCAATGCG 59.898 55.000 14.70 8.11 45.15 4.73 R
3624 3688 1.471684 CTGTTTGAGATTGGAGCTGGC 59.528 52.381 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.324991 GGTCGGCGGTGGTTCCTT 62.325 66.667 7.21 0.00 0.00 3.36
18 19 3.047877 GTCGGCGGTGGTTCCTTG 61.048 66.667 7.21 0.00 0.00 3.61
19 20 3.552384 TCGGCGGTGGTTCCTTGT 61.552 61.111 7.21 0.00 0.00 3.16
20 21 3.047877 CGGCGGTGGTTCCTTGTC 61.048 66.667 0.00 0.00 0.00 3.18
21 22 2.430367 GGCGGTGGTTCCTTGTCT 59.570 61.111 0.00 0.00 0.00 3.41
22 23 1.671379 GGCGGTGGTTCCTTGTCTC 60.671 63.158 0.00 0.00 0.00 3.36
23 24 1.371558 GCGGTGGTTCCTTGTCTCT 59.628 57.895 0.00 0.00 0.00 3.10
24 25 0.670854 GCGGTGGTTCCTTGTCTCTC 60.671 60.000 0.00 0.00 0.00 3.20
25 26 0.969894 CGGTGGTTCCTTGTCTCTCT 59.030 55.000 0.00 0.00 0.00 3.10
26 27 1.344763 CGGTGGTTCCTTGTCTCTCTT 59.655 52.381 0.00 0.00 0.00 2.85
27 28 2.610727 CGGTGGTTCCTTGTCTCTCTTC 60.611 54.545 0.00 0.00 0.00 2.87
28 29 2.635427 GGTGGTTCCTTGTCTCTCTTCT 59.365 50.000 0.00 0.00 0.00 2.85
29 30 3.071747 GGTGGTTCCTTGTCTCTCTTCTT 59.928 47.826 0.00 0.00 0.00 2.52
30 31 4.311606 GTGGTTCCTTGTCTCTCTTCTTC 58.688 47.826 0.00 0.00 0.00 2.87
31 32 3.005897 TGGTTCCTTGTCTCTCTTCTTCG 59.994 47.826 0.00 0.00 0.00 3.79
32 33 3.580731 GTTCCTTGTCTCTCTTCTTCGG 58.419 50.000 0.00 0.00 0.00 4.30
33 34 1.546476 TCCTTGTCTCTCTTCTTCGGC 59.454 52.381 0.00 0.00 0.00 5.54
34 35 1.623359 CTTGTCTCTCTTCTTCGGCG 58.377 55.000 0.00 0.00 0.00 6.46
35 36 0.243907 TTGTCTCTCTTCTTCGGCGG 59.756 55.000 7.21 0.00 0.00 6.13
36 37 0.894184 TGTCTCTCTTCTTCGGCGGT 60.894 55.000 7.21 0.00 0.00 5.68
37 38 0.456995 GTCTCTCTTCTTCGGCGGTG 60.457 60.000 7.21 0.00 0.00 4.94
38 39 0.894184 TCTCTCTTCTTCGGCGGTGT 60.894 55.000 7.21 0.00 0.00 4.16
39 40 0.038159 CTCTCTTCTTCGGCGGTGTT 60.038 55.000 7.21 0.00 0.00 3.32
40 41 0.038526 TCTCTTCTTCGGCGGTGTTC 60.039 55.000 7.21 0.00 0.00 3.18
41 42 1.344942 CTCTTCTTCGGCGGTGTTCG 61.345 60.000 7.21 0.00 42.76 3.95
42 43 1.663702 CTTCTTCGGCGGTGTTCGT 60.664 57.895 7.21 0.00 41.72 3.85
43 44 0.387622 CTTCTTCGGCGGTGTTCGTA 60.388 55.000 7.21 0.00 41.72 3.43
44 45 0.664166 TTCTTCGGCGGTGTTCGTAC 60.664 55.000 7.21 0.00 41.72 3.67
45 46 1.080974 CTTCGGCGGTGTTCGTACT 60.081 57.895 7.21 0.00 41.72 2.73
46 47 1.069378 CTTCGGCGGTGTTCGTACTC 61.069 60.000 7.21 0.00 41.72 2.59
47 48 2.784957 TTCGGCGGTGTTCGTACTCG 62.785 60.000 7.21 0.00 41.72 4.18
48 49 2.505557 GGCGGTGTTCGTACTCGG 60.506 66.667 9.47 4.62 41.72 4.63
49 50 2.505557 GCGGTGTTCGTACTCGGG 60.506 66.667 9.47 0.00 41.72 5.14
50 51 2.956987 CGGTGTTCGTACTCGGGT 59.043 61.111 0.00 0.00 37.69 5.28
51 52 1.443194 CGGTGTTCGTACTCGGGTG 60.443 63.158 0.00 0.00 37.69 4.61
52 53 1.735559 GGTGTTCGTACTCGGGTGC 60.736 63.158 0.00 0.00 37.69 5.01
53 54 1.288127 GTGTTCGTACTCGGGTGCT 59.712 57.895 0.00 0.00 37.69 4.40
54 55 0.731855 GTGTTCGTACTCGGGTGCTC 60.732 60.000 0.00 0.00 37.69 4.26
55 56 0.892358 TGTTCGTACTCGGGTGCTCT 60.892 55.000 0.00 0.00 37.69 4.09
56 57 0.243095 GTTCGTACTCGGGTGCTCTT 59.757 55.000 0.00 0.00 37.69 2.85
57 58 0.963962 TTCGTACTCGGGTGCTCTTT 59.036 50.000 0.00 0.00 37.69 2.52
58 59 0.242825 TCGTACTCGGGTGCTCTTTG 59.757 55.000 0.00 0.00 37.69 2.77
59 60 0.736325 CGTACTCGGGTGCTCTTTGG 60.736 60.000 0.00 0.00 0.00 3.28
60 61 0.320697 GTACTCGGGTGCTCTTTGGT 59.679 55.000 0.00 0.00 0.00 3.67
61 62 0.320374 TACTCGGGTGCTCTTTGGTG 59.680 55.000 0.00 0.00 0.00 4.17
62 63 1.071471 CTCGGGTGCTCTTTGGTGT 59.929 57.895 0.00 0.00 0.00 4.16
63 64 1.227823 TCGGGTGCTCTTTGGTGTG 60.228 57.895 0.00 0.00 0.00 3.82
64 65 1.525995 CGGGTGCTCTTTGGTGTGT 60.526 57.895 0.00 0.00 0.00 3.72
65 66 1.507141 CGGGTGCTCTTTGGTGTGTC 61.507 60.000 0.00 0.00 0.00 3.67
66 67 0.179018 GGGTGCTCTTTGGTGTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
67 68 1.230324 GGTGCTCTTTGGTGTGTCTC 58.770 55.000 0.00 0.00 0.00 3.36
68 69 1.202698 GGTGCTCTTTGGTGTGTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
69 70 1.869767 GTGCTCTTTGGTGTGTCTCTG 59.130 52.381 0.00 0.00 0.00 3.35
70 71 0.871057 GCTCTTTGGTGTGTCTCTGC 59.129 55.000 0.00 0.00 0.00 4.26
71 72 1.542108 GCTCTTTGGTGTGTCTCTGCT 60.542 52.381 0.00 0.00 0.00 4.24
72 73 2.843701 CTCTTTGGTGTGTCTCTGCTT 58.156 47.619 0.00 0.00 0.00 3.91
73 74 2.547211 CTCTTTGGTGTGTCTCTGCTTG 59.453 50.000 0.00 0.00 0.00 4.01
74 75 1.605710 CTTTGGTGTGTCTCTGCTTGG 59.394 52.381 0.00 0.00 0.00 3.61
75 76 0.819259 TTGGTGTGTCTCTGCTTGGC 60.819 55.000 0.00 0.00 0.00 4.52
76 77 2.320587 GGTGTGTCTCTGCTTGGCG 61.321 63.158 0.00 0.00 0.00 5.69
77 78 1.300931 GTGTGTCTCTGCTTGGCGA 60.301 57.895 0.00 0.00 0.00 5.54
78 79 0.671781 GTGTGTCTCTGCTTGGCGAT 60.672 55.000 0.00 0.00 0.00 4.58
79 80 0.671472 TGTGTCTCTGCTTGGCGATG 60.671 55.000 0.00 0.00 0.00 3.84
80 81 1.742880 TGTCTCTGCTTGGCGATGC 60.743 57.895 0.00 0.00 0.00 3.91
91 92 3.127533 GCGATGCCCTGCGTCTTT 61.128 61.111 6.71 0.00 41.85 2.52
92 93 2.787249 CGATGCCCTGCGTCTTTG 59.213 61.111 6.71 0.00 41.85 2.77
93 94 2.486966 GATGCCCTGCGTCTTTGC 59.513 61.111 1.13 0.00 40.94 3.68
94 95 3.056313 GATGCCCTGCGTCTTTGCC 62.056 63.158 1.13 0.00 40.94 4.52
98 99 3.726517 CCTGCGTCTTTGCCGGTG 61.727 66.667 1.90 0.00 34.84 4.94
99 100 3.726517 CTGCGTCTTTGCCGGTGG 61.727 66.667 1.90 0.00 0.00 4.61
117 118 3.337889 CACACAGGTGCCGTGACG 61.338 66.667 15.94 0.00 38.37 4.35
118 119 3.845259 ACACAGGTGCCGTGACGT 61.845 61.111 3.64 0.00 37.80 4.34
119 120 3.036084 CACAGGTGCCGTGACGTC 61.036 66.667 9.11 9.11 36.43 4.34
120 121 4.640855 ACAGGTGCCGTGACGTCG 62.641 66.667 11.62 0.00 0.00 5.12
121 122 4.640855 CAGGTGCCGTGACGTCGT 62.641 66.667 11.62 0.00 0.00 4.34
122 123 4.338539 AGGTGCCGTGACGTCGTC 62.339 66.667 18.51 18.51 0.00 4.20
123 124 4.338539 GGTGCCGTGACGTCGTCT 62.339 66.667 24.75 0.00 33.15 4.18
124 125 2.799916 GTGCCGTGACGTCGTCTC 60.800 66.667 24.75 20.07 33.15 3.36
125 126 4.379143 TGCCGTGACGTCGTCTCG 62.379 66.667 31.96 31.96 45.20 4.04
128 129 2.202146 CGTGACGTCGTCTCGGTC 60.202 66.667 31.52 14.86 43.01 4.79
129 130 2.665395 CGTGACGTCGTCTCGGTCT 61.665 63.158 31.52 0.00 43.01 3.85
130 131 1.132232 GTGACGTCGTCTCGGTCTC 59.868 63.158 24.75 0.00 33.15 3.36
131 132 2.378084 TGACGTCGTCTCGGTCTCG 61.378 63.158 24.75 0.00 33.15 4.04
132 133 3.699130 GACGTCGTCTCGGTCTCGC 62.699 68.421 18.09 0.00 36.13 5.03
133 134 4.517703 CGTCGTCTCGGTCTCGCC 62.518 72.222 0.00 0.00 36.13 5.54
134 135 3.126225 GTCGTCTCGGTCTCGCCT 61.126 66.667 0.00 0.00 36.13 5.52
135 136 3.125573 TCGTCTCGGTCTCGCCTG 61.126 66.667 0.00 0.00 36.13 4.85
136 137 4.180946 CGTCTCGGTCTCGCCTGG 62.181 72.222 0.00 0.00 36.13 4.45
137 138 4.500116 GTCTCGGTCTCGCCTGGC 62.500 72.222 9.11 9.11 36.13 4.85
141 142 4.394712 CGGTCTCGCCTGGCCTTT 62.395 66.667 14.12 0.00 34.25 3.11
142 143 2.436824 GGTCTCGCCTGGCCTTTC 60.437 66.667 14.12 1.61 0.00 2.62
143 144 2.815647 GTCTCGCCTGGCCTTTCG 60.816 66.667 14.12 4.39 0.00 3.46
144 145 2.994995 TCTCGCCTGGCCTTTCGA 60.995 61.111 14.12 8.93 0.00 3.71
145 146 2.047274 CTCGCCTGGCCTTTCGAA 60.047 61.111 14.12 0.00 0.00 3.71
146 147 1.450312 CTCGCCTGGCCTTTCGAAT 60.450 57.895 14.12 0.00 0.00 3.34
147 148 1.709147 CTCGCCTGGCCTTTCGAATG 61.709 60.000 14.12 0.45 0.00 2.67
148 149 2.040544 CGCCTGGCCTTTCGAATGT 61.041 57.895 14.12 0.00 0.00 2.71
149 150 0.742990 CGCCTGGCCTTTCGAATGTA 60.743 55.000 14.12 0.00 0.00 2.29
150 151 0.733150 GCCTGGCCTTTCGAATGTAC 59.267 55.000 7.66 0.00 0.00 2.90
151 152 1.379527 CCTGGCCTTTCGAATGTACC 58.620 55.000 3.32 6.07 0.00 3.34
152 153 1.379527 CTGGCCTTTCGAATGTACCC 58.620 55.000 3.32 2.51 0.00 3.69
153 154 0.034863 TGGCCTTTCGAATGTACCCC 60.035 55.000 3.32 0.09 0.00 4.95
154 155 0.750546 GGCCTTTCGAATGTACCCCC 60.751 60.000 0.00 0.00 0.00 5.40
155 156 1.093496 GCCTTTCGAATGTACCCCCG 61.093 60.000 0.00 0.00 0.00 5.73
156 157 0.538118 CCTTTCGAATGTACCCCCGA 59.462 55.000 0.00 0.00 0.00 5.14
157 158 1.648504 CTTTCGAATGTACCCCCGAC 58.351 55.000 0.00 0.00 0.00 4.79
158 159 0.975135 TTTCGAATGTACCCCCGACA 59.025 50.000 0.00 0.00 0.00 4.35
159 160 0.247185 TTCGAATGTACCCCCGACAC 59.753 55.000 0.00 0.00 0.00 3.67
160 161 0.899253 TCGAATGTACCCCCGACACA 60.899 55.000 0.00 0.00 0.00 3.72
161 162 0.459585 CGAATGTACCCCCGACACAG 60.460 60.000 0.00 0.00 0.00 3.66
162 163 0.107848 GAATGTACCCCCGACACAGG 60.108 60.000 0.00 0.00 0.00 4.00
163 164 0.838987 AATGTACCCCCGACACAGGT 60.839 55.000 0.00 0.00 37.69 4.00
164 165 1.550130 ATGTACCCCCGACACAGGTG 61.550 60.000 0.00 0.00 35.02 4.00
165 166 2.605295 TACCCCCGACACAGGTGG 60.605 66.667 4.24 0.00 35.02 4.61
166 167 3.471570 TACCCCCGACACAGGTGGT 62.472 63.158 4.24 0.00 35.02 4.16
174 175 3.119193 CACAGGTGGTGTTGTGGC 58.881 61.111 0.00 0.00 42.75 5.01
175 176 2.515991 ACAGGTGGTGTTGTGGCG 60.516 61.111 0.00 0.00 34.94 5.69
176 177 2.515991 CAGGTGGTGTTGTGGCGT 60.516 61.111 0.00 0.00 0.00 5.68
177 178 2.118404 CAGGTGGTGTTGTGGCGTT 61.118 57.895 0.00 0.00 0.00 4.84
178 179 2.118404 AGGTGGTGTTGTGGCGTTG 61.118 57.895 0.00 0.00 0.00 4.10
179 180 2.411504 GGTGGTGTTGTGGCGTTGT 61.412 57.895 0.00 0.00 0.00 3.32
180 181 1.096386 GGTGGTGTTGTGGCGTTGTA 61.096 55.000 0.00 0.00 0.00 2.41
181 182 0.028374 GTGGTGTTGTGGCGTTGTAC 59.972 55.000 0.00 0.00 0.00 2.90
182 183 0.107606 TGGTGTTGTGGCGTTGTACT 60.108 50.000 0.00 0.00 0.00 2.73
183 184 1.018910 GGTGTTGTGGCGTTGTACTT 58.981 50.000 0.00 0.00 0.00 2.24
184 185 1.402613 GGTGTTGTGGCGTTGTACTTT 59.597 47.619 0.00 0.00 0.00 2.66
185 186 2.540157 GGTGTTGTGGCGTTGTACTTTC 60.540 50.000 0.00 0.00 0.00 2.62
186 187 2.353579 GTGTTGTGGCGTTGTACTTTCT 59.646 45.455 0.00 0.00 0.00 2.52
187 188 2.610374 TGTTGTGGCGTTGTACTTTCTC 59.390 45.455 0.00 0.00 0.00 2.87
188 189 1.493772 TGTGGCGTTGTACTTTCTCG 58.506 50.000 0.00 0.00 0.00 4.04
189 190 0.788391 GTGGCGTTGTACTTTCTCGG 59.212 55.000 0.00 0.00 0.00 4.63
190 191 0.947180 TGGCGTTGTACTTTCTCGGC 60.947 55.000 0.00 0.00 44.83 5.54
191 192 0.669625 GGCGTTGTACTTTCTCGGCT 60.670 55.000 0.00 0.00 42.20 5.52
192 193 0.438830 GCGTTGTACTTTCTCGGCTG 59.561 55.000 0.00 0.00 0.00 4.85
193 194 1.779569 CGTTGTACTTTCTCGGCTGT 58.220 50.000 0.00 0.00 0.00 4.40
194 195 1.455786 CGTTGTACTTTCTCGGCTGTG 59.544 52.381 0.00 0.00 0.00 3.66
195 196 1.194772 GTTGTACTTTCTCGGCTGTGC 59.805 52.381 0.00 0.00 0.00 4.57
196 197 0.666274 TGTACTTTCTCGGCTGTGCG 60.666 55.000 0.00 0.00 0.00 5.34
197 198 1.080093 TACTTTCTCGGCTGTGCGG 60.080 57.895 0.00 0.00 0.00 5.69
198 199 1.812686 TACTTTCTCGGCTGTGCGGT 61.813 55.000 0.00 0.00 0.00 5.68
199 200 2.664851 TTTCTCGGCTGTGCGGTG 60.665 61.111 0.00 0.00 0.00 4.94
205 206 3.605664 GGCTGTGCGGTGCCTTTT 61.606 61.111 6.44 0.00 45.26 2.27
206 207 2.355009 GCTGTGCGGTGCCTTTTG 60.355 61.111 0.00 0.00 0.00 2.44
207 208 2.844451 GCTGTGCGGTGCCTTTTGA 61.844 57.895 0.00 0.00 0.00 2.69
208 209 1.959085 CTGTGCGGTGCCTTTTGAT 59.041 52.632 0.00 0.00 0.00 2.57
209 210 0.314935 CTGTGCGGTGCCTTTTGATT 59.685 50.000 0.00 0.00 0.00 2.57
210 211 0.031857 TGTGCGGTGCCTTTTGATTG 59.968 50.000 0.00 0.00 0.00 2.67
211 212 1.006337 TGCGGTGCCTTTTGATTGC 60.006 52.632 0.00 0.00 0.00 3.56
212 213 2.088178 GCGGTGCCTTTTGATTGCG 61.088 57.895 0.00 0.00 0.00 4.85
213 214 1.285641 CGGTGCCTTTTGATTGCGT 59.714 52.632 0.00 0.00 0.00 5.24
214 215 0.729140 CGGTGCCTTTTGATTGCGTC 60.729 55.000 0.00 0.00 0.00 5.19
215 216 0.729140 GGTGCCTTTTGATTGCGTCG 60.729 55.000 0.00 0.00 0.00 5.12
216 217 0.237235 GTGCCTTTTGATTGCGTCGA 59.763 50.000 0.00 0.00 0.00 4.20
217 218 0.237235 TGCCTTTTGATTGCGTCGAC 59.763 50.000 5.18 5.18 0.00 4.20
218 219 0.789383 GCCTTTTGATTGCGTCGACG 60.789 55.000 32.57 32.57 43.27 5.12
219 220 0.787787 CCTTTTGATTGCGTCGACGA 59.212 50.000 39.74 21.78 43.02 4.20
220 221 1.461888 CCTTTTGATTGCGTCGACGAC 60.462 52.381 39.74 28.96 43.02 4.34
236 237 3.041701 ACGCAGTGCCATGGTTTG 58.958 55.556 14.67 10.46 42.51 2.93
246 247 1.755179 CCATGGTTTGGTCTGCTAGG 58.245 55.000 2.57 0.00 40.99 3.02
247 248 1.098050 CATGGTTTGGTCTGCTAGGC 58.902 55.000 0.00 0.00 0.00 3.93
248 249 0.392998 ATGGTTTGGTCTGCTAGGCG 60.393 55.000 0.00 0.00 0.00 5.52
249 250 1.295423 GGTTTGGTCTGCTAGGCGA 59.705 57.895 0.00 0.00 0.00 5.54
250 251 0.107654 GGTTTGGTCTGCTAGGCGAT 60.108 55.000 0.00 0.00 0.00 4.58
251 252 1.009829 GTTTGGTCTGCTAGGCGATG 58.990 55.000 0.00 0.00 0.00 3.84
252 253 0.744414 TTTGGTCTGCTAGGCGATGC 60.744 55.000 0.00 0.00 0.00 3.91
262 263 2.812499 GGCGATGCCCTTCGACTA 59.188 61.111 7.62 0.00 43.89 2.59
263 264 1.591863 GGCGATGCCCTTCGACTAC 60.592 63.158 7.62 0.00 43.89 2.73
264 265 1.944676 GCGATGCCCTTCGACTACG 60.945 63.158 7.62 0.00 41.62 3.51
265 266 1.944676 CGATGCCCTTCGACTACGC 60.945 63.158 0.00 0.00 41.62 4.42
266 267 1.591863 GATGCCCTTCGACTACGCC 60.592 63.158 0.00 0.00 39.58 5.68
267 268 3.426117 ATGCCCTTCGACTACGCCG 62.426 63.158 0.00 0.00 39.58 6.46
268 269 4.867599 GCCCTTCGACTACGCCGG 62.868 72.222 0.00 0.00 39.58 6.13
269 270 3.446570 CCCTTCGACTACGCCGGT 61.447 66.667 1.90 0.00 39.58 5.28
270 271 2.202570 CCTTCGACTACGCCGGTG 60.203 66.667 14.93 14.93 39.58 4.94
271 272 2.693762 CCTTCGACTACGCCGGTGA 61.694 63.158 24.59 4.37 39.58 4.02
272 273 1.513586 CTTCGACTACGCCGGTGAC 60.514 63.158 24.59 8.92 39.58 3.67
273 274 2.191354 CTTCGACTACGCCGGTGACA 62.191 60.000 24.59 8.00 39.58 3.58
274 275 2.462255 TTCGACTACGCCGGTGACAC 62.462 60.000 24.59 8.91 39.58 3.67
275 276 2.646719 GACTACGCCGGTGACACA 59.353 61.111 24.59 2.54 0.00 3.72
276 277 1.443872 GACTACGCCGGTGACACAG 60.444 63.158 24.59 14.60 0.00 3.66
277 278 2.126071 CTACGCCGGTGACACAGG 60.126 66.667 24.59 19.30 36.48 4.00
282 283 4.742201 CCGGTGACACAGGCTCCG 62.742 72.222 12.00 6.39 40.85 4.63
283 284 3.991051 CGGTGACACAGGCTCCGT 61.991 66.667 8.08 0.00 37.56 4.69
284 285 2.357517 GGTGACACAGGCTCCGTG 60.358 66.667 8.08 3.62 40.32 4.94
285 286 2.357517 GTGACACAGGCTCCGTGG 60.358 66.667 9.48 0.00 38.74 4.94
286 287 4.314440 TGACACAGGCTCCGTGGC 62.314 66.667 9.48 6.88 43.10 5.01
295 296 4.813526 CTCCGTGGCGTCGTCTCG 62.814 72.222 13.87 13.87 0.00 4.04
315 316 4.367023 CCCGCGTGACCCTTCGAA 62.367 66.667 4.92 0.00 0.00 3.71
316 317 2.125673 CCGCGTGACCCTTCGAAT 60.126 61.111 4.92 0.00 0.00 3.34
317 318 2.452813 CCGCGTGACCCTTCGAATG 61.453 63.158 4.92 0.00 0.00 2.67
318 319 2.785258 GCGTGACCCTTCGAATGC 59.215 61.111 0.00 0.00 0.00 3.56
319 320 3.081133 CGTGACCCTTCGAATGCG 58.919 61.111 0.00 0.00 39.35 4.73
320 321 2.785258 GTGACCCTTCGAATGCGC 59.215 61.111 0.00 0.00 37.46 6.09
321 322 2.435938 TGACCCTTCGAATGCGCC 60.436 61.111 4.18 0.00 37.46 6.53
322 323 3.202706 GACCCTTCGAATGCGCCC 61.203 66.667 4.18 0.00 37.46 6.13
323 324 4.796495 ACCCTTCGAATGCGCCCC 62.796 66.667 4.18 0.00 37.46 5.80
324 325 4.794648 CCCTTCGAATGCGCCCCA 62.795 66.667 4.18 0.00 37.46 4.96
325 326 2.516930 CCTTCGAATGCGCCCCAT 60.517 61.111 4.18 0.00 37.46 4.00
326 327 2.717485 CTTCGAATGCGCCCCATG 59.283 61.111 4.18 0.00 37.46 3.66
327 328 1.819208 CTTCGAATGCGCCCCATGA 60.819 57.895 4.18 0.00 37.46 3.07
328 329 2.051804 CTTCGAATGCGCCCCATGAC 62.052 60.000 4.18 0.00 37.46 3.06
329 330 2.811542 TTCGAATGCGCCCCATGACA 62.812 55.000 4.18 0.00 37.46 3.58
330 331 2.800736 GAATGCGCCCCATGACAC 59.199 61.111 4.18 0.00 33.49 3.67
331 332 2.035469 AATGCGCCCCATGACACA 59.965 55.556 4.18 0.00 33.49 3.72
332 333 1.996786 GAATGCGCCCCATGACACAG 61.997 60.000 4.18 0.00 33.49 3.66
333 334 4.720902 TGCGCCCCATGACACAGG 62.721 66.667 4.18 0.00 0.00 4.00
334 335 4.722700 GCGCCCCATGACACAGGT 62.723 66.667 0.00 0.00 0.00 4.00
335 336 2.747460 CGCCCCATGACACAGGTG 60.747 66.667 0.00 0.00 0.00 4.00
336 337 2.361610 GCCCCATGACACAGGTGG 60.362 66.667 4.24 0.00 34.19 4.61
337 338 3.170362 CCCCATGACACAGGTGGT 58.830 61.111 4.24 0.00 34.19 4.16
361 362 2.355837 GCGTTGTGCAGTCTCGGA 60.356 61.111 0.00 0.00 45.45 4.55
362 363 1.738099 GCGTTGTGCAGTCTCGGAT 60.738 57.895 0.00 0.00 45.45 4.18
686 688 1.519455 CATTCCAGAGGACGCCGAC 60.519 63.158 0.00 0.00 0.00 4.79
799 810 1.134371 GTGACAATGCTCCTCCTACCC 60.134 57.143 0.00 0.00 0.00 3.69
841 852 3.486542 GGATCGCATTCTTCTTGCAAGAC 60.487 47.826 28.46 14.71 40.14 3.01
872 883 2.559440 GCAATCTGTGACCAGGATCTC 58.441 52.381 0.00 0.00 39.31 2.75
939 950 3.935828 GCAAGGAGTCTTCTGGATTGTAC 59.064 47.826 0.00 0.00 0.00 2.90
949 960 3.701664 TCTGGATTGTACAGAGCAGAGA 58.298 45.455 0.00 0.00 39.87 3.10
1018 1032 0.390124 CATGCATTGGGGAATTCGGG 59.610 55.000 0.00 0.00 0.00 5.14
1080 1094 4.271816 CCGAGGAGGACGGCATCG 62.272 72.222 0.00 0.00 45.00 3.84
1160 1174 2.107204 CCCTCATGGAATCTGGTAAGGG 59.893 54.545 0.00 0.00 36.53 3.95
1164 1178 1.377690 TGGAATCTGGTAAGGGCCAA 58.622 50.000 6.18 0.00 38.18 4.52
1203 1217 4.824289 ACCATTTGTCAAATCCATCTTGC 58.176 39.130 7.87 0.00 0.00 4.01
1257 1273 9.523168 TGAATTCTGATAATAATGCATGATGGA 57.477 29.630 0.00 0.00 0.00 3.41
1263 1279 8.276252 TGATAATAATGCATGATGGATCACAG 57.724 34.615 14.18 0.00 40.03 3.66
1283 1299 7.634718 TCACAGTGGTATTTAAATATGGACCA 58.365 34.615 14.06 14.06 0.00 4.02
1288 1304 8.333235 AGTGGTATTTAAATATGGACCACAGAA 58.667 33.333 32.81 10.42 46.16 3.02
1597 1614 5.770162 AGCTTGAAAATGGCCAGGTATATAC 59.230 40.000 13.05 4.14 0.00 1.47
1626 1643 4.503741 ACCCAATGACAAACATTCTTCG 57.496 40.909 0.00 0.00 46.01 3.79
1722 1739 4.024809 GCTGTCAAACAACTAGACCTGAAC 60.025 45.833 0.00 0.00 0.00 3.18
1776 1793 3.102972 AGTCTTGATGCTCAGCCTCTTA 58.897 45.455 3.40 0.00 0.00 2.10
1787 1804 2.027192 TCAGCCTCTTACACCATCCAAC 60.027 50.000 0.00 0.00 0.00 3.77
1912 1929 7.764443 AGCGCTAGTCTTTTCTTCATTAATACA 59.236 33.333 8.99 0.00 0.00 2.29
1938 1965 8.641499 TTCAAACTTGACAACATCCAAATTAC 57.359 30.769 0.00 0.00 36.83 1.89
1944 1971 6.474819 TGACAACATCCAAATTACACTACG 57.525 37.500 0.00 0.00 0.00 3.51
1945 1972 5.992829 TGACAACATCCAAATTACACTACGT 59.007 36.000 0.00 0.00 0.00 3.57
1946 1973 7.153315 TGACAACATCCAAATTACACTACGTA 58.847 34.615 0.00 0.00 0.00 3.57
1947 1974 7.116662 TGACAACATCCAAATTACACTACGTAC 59.883 37.037 0.00 0.00 0.00 3.67
1950 1977 8.447833 CAACATCCAAATTACACTACGTACAAT 58.552 33.333 0.00 0.00 0.00 2.71
1951 1978 7.970384 ACATCCAAATTACACTACGTACAATG 58.030 34.615 0.00 0.00 0.00 2.82
2118 2180 8.418662 ACCGTTAGCACATTTGATTACTAGATA 58.581 33.333 0.00 0.00 0.00 1.98
2159 2221 4.314961 TGAACTGTTGTTGTCGCAGATAT 58.685 39.130 0.00 0.00 35.93 1.63
2174 2236 6.143118 GTCGCAGATATCACTACTGATCAAAC 59.857 42.308 5.32 0.00 40.67 2.93
2192 2254 5.321102 TCAAACACCACTAAGTTGGCATAT 58.679 37.500 0.00 0.00 40.77 1.78
2301 2363 1.354368 TCCCCCAACATCCTTCTTGAC 59.646 52.381 0.00 0.00 0.00 3.18
2571 2633 6.016276 GGGTATGCACCTTTTGTTCCTATATG 60.016 42.308 0.00 0.00 45.04 1.78
2572 2634 4.981806 TGCACCTTTTGTTCCTATATGC 57.018 40.909 0.00 0.00 0.00 3.14
2573 2635 4.599041 TGCACCTTTTGTTCCTATATGCT 58.401 39.130 0.00 0.00 0.00 3.79
2574 2636 4.640201 TGCACCTTTTGTTCCTATATGCTC 59.360 41.667 0.00 0.00 0.00 4.26
2575 2637 4.884164 GCACCTTTTGTTCCTATATGCTCT 59.116 41.667 0.00 0.00 0.00 4.09
2576 2638 5.008118 GCACCTTTTGTTCCTATATGCTCTC 59.992 44.000 0.00 0.00 0.00 3.20
2577 2639 6.352516 CACCTTTTGTTCCTATATGCTCTCT 58.647 40.000 0.00 0.00 0.00 3.10
2578 2640 6.825721 CACCTTTTGTTCCTATATGCTCTCTT 59.174 38.462 0.00 0.00 0.00 2.85
2579 2641 7.337942 CACCTTTTGTTCCTATATGCTCTCTTT 59.662 37.037 0.00 0.00 0.00 2.52
2580 2642 7.890655 ACCTTTTGTTCCTATATGCTCTCTTTT 59.109 33.333 0.00 0.00 0.00 2.27
2581 2643 8.743714 CCTTTTGTTCCTATATGCTCTCTTTTT 58.256 33.333 0.00 0.00 0.00 1.94
2620 2682 6.032039 TCCTATATGCTTCTTCCCCATACAT 58.968 40.000 0.00 0.00 0.00 2.29
2734 2796 4.099633 TGCCCATTATCAGAGATAGGAGG 58.900 47.826 0.00 0.00 0.00 4.30
2869 2931 1.502231 ACATGAGTGACGCTGTTGTC 58.498 50.000 0.00 0.00 39.37 3.18
2893 2955 2.978156 TGGGATTCCTTGCAGAAGTT 57.022 45.000 2.01 0.00 0.00 2.66
2896 2958 2.291217 GGGATTCCTTGCAGAAGTTCCT 60.291 50.000 2.01 0.00 0.00 3.36
2938 3000 0.377203 GTATCGCGCCCCAAAAGAAG 59.623 55.000 0.00 0.00 0.00 2.85
2963 3025 3.560882 GGCTGAAGATCCCCCATTATCTG 60.561 52.174 0.00 0.00 32.79 2.90
3014 3076 3.422343 CGATCGTCAAAGAGTTGTTGCTC 60.422 47.826 7.03 0.00 36.07 4.26
3082 3144 5.934781 ACTCAAGGAAAGACAACTGATTCT 58.065 37.500 0.00 0.00 0.00 2.40
3135 3197 3.970640 AGGGTGTAAAAAGCCCATGAAAA 59.029 39.130 0.00 0.00 44.69 2.29
3190 3252 3.386078 TGTAGCTTTCCAAATTTGTGCCA 59.614 39.130 16.73 7.27 0.00 4.92
3198 3260 2.093553 CCAAATTTGTGCCACCATAGGG 60.094 50.000 16.73 0.00 41.29 3.53
3218 3280 8.944029 CATAGGGCTGAATTGTCATATAGAAAG 58.056 37.037 0.00 0.00 31.85 2.62
3279 3341 1.069978 GGGCTCAGTCTCTAGGCATTC 59.930 57.143 7.39 0.00 39.91 2.67
3397 3459 5.449862 GCTACTGACTAGAACCAGATCACAG 60.450 48.000 14.90 0.00 34.65 3.66
3441 3503 4.216042 TGCAAGAATGTTGGACATGTACAG 59.784 41.667 11.40 0.00 37.97 2.74
3588 3652 5.559148 AATCTCAGTCCTCTTTGAACAGT 57.441 39.130 0.00 0.00 0.00 3.55
3719 3783 1.985159 ACCAAGACACTGGATTGCCTA 59.015 47.619 0.00 0.00 38.96 3.93
3761 3825 6.784031 AGATCAATTAGTGGACCAGAAAAGT 58.216 36.000 0.00 0.00 0.00 2.66
3763 3827 8.552296 AGATCAATTAGTGGACCAGAAAAGTAT 58.448 33.333 0.00 0.00 0.00 2.12
3767 3837 8.454106 CAATTAGTGGACCAGAAAAGTATTGAG 58.546 37.037 0.00 0.00 0.00 3.02
3830 3900 7.217906 AGTTAGTAAGAACTTTGTCCAAGGAG 58.782 38.462 0.00 0.00 36.19 3.69
3905 3976 9.770097 AAACAGTCATATCTTATATGTCCAGTG 57.230 33.333 6.76 4.46 0.00 3.66
3911 3982 7.955750 TCATATCTTATATGTCCAGTGAAGGGA 59.044 37.037 6.76 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.324991 AAGGAACCACCGCCGACC 62.325 66.667 0.00 0.00 44.74 4.79
1 2 3.047877 CAAGGAACCACCGCCGAC 61.048 66.667 0.00 0.00 44.74 4.79
2 3 3.524648 GACAAGGAACCACCGCCGA 62.525 63.158 0.00 0.00 44.74 5.54
3 4 3.047877 GACAAGGAACCACCGCCG 61.048 66.667 0.00 0.00 44.74 6.46
4 5 1.671379 GAGACAAGGAACCACCGCC 60.671 63.158 0.00 0.00 44.74 6.13
5 6 0.670854 GAGAGACAAGGAACCACCGC 60.671 60.000 0.00 0.00 44.74 5.68
6 7 0.969894 AGAGAGACAAGGAACCACCG 59.030 55.000 0.00 0.00 44.74 4.94
7 8 2.635427 AGAAGAGAGACAAGGAACCACC 59.365 50.000 0.00 0.00 39.35 4.61
8 9 4.311606 GAAGAAGAGAGACAAGGAACCAC 58.688 47.826 0.00 0.00 0.00 4.16
9 10 3.005897 CGAAGAAGAGAGACAAGGAACCA 59.994 47.826 0.00 0.00 0.00 3.67
10 11 3.580731 CGAAGAAGAGAGACAAGGAACC 58.419 50.000 0.00 0.00 0.00 3.62
11 12 3.580731 CCGAAGAAGAGAGACAAGGAAC 58.419 50.000 0.00 0.00 0.00 3.62
12 13 2.028930 GCCGAAGAAGAGAGACAAGGAA 60.029 50.000 0.00 0.00 0.00 3.36
13 14 1.546476 GCCGAAGAAGAGAGACAAGGA 59.454 52.381 0.00 0.00 0.00 3.36
14 15 1.734047 CGCCGAAGAAGAGAGACAAGG 60.734 57.143 0.00 0.00 0.00 3.61
15 16 1.623359 CGCCGAAGAAGAGAGACAAG 58.377 55.000 0.00 0.00 0.00 3.16
16 17 0.243907 CCGCCGAAGAAGAGAGACAA 59.756 55.000 0.00 0.00 0.00 3.18
17 18 0.894184 ACCGCCGAAGAAGAGAGACA 60.894 55.000 0.00 0.00 0.00 3.41
18 19 0.456995 CACCGCCGAAGAAGAGAGAC 60.457 60.000 0.00 0.00 0.00 3.36
19 20 0.894184 ACACCGCCGAAGAAGAGAGA 60.894 55.000 0.00 0.00 0.00 3.10
20 21 0.038159 AACACCGCCGAAGAAGAGAG 60.038 55.000 0.00 0.00 0.00 3.20
21 22 0.038526 GAACACCGCCGAAGAAGAGA 60.039 55.000 0.00 0.00 0.00 3.10
22 23 1.344942 CGAACACCGCCGAAGAAGAG 61.345 60.000 0.00 0.00 0.00 2.85
23 24 1.372499 CGAACACCGCCGAAGAAGA 60.372 57.895 0.00 0.00 0.00 2.87
24 25 0.387622 TACGAACACCGCCGAAGAAG 60.388 55.000 0.00 0.00 43.32 2.85
25 26 0.664166 GTACGAACACCGCCGAAGAA 60.664 55.000 0.00 0.00 43.32 2.52
26 27 1.081242 GTACGAACACCGCCGAAGA 60.081 57.895 0.00 0.00 43.32 2.87
27 28 1.069378 GAGTACGAACACCGCCGAAG 61.069 60.000 0.00 0.00 43.32 3.79
28 29 1.081242 GAGTACGAACACCGCCGAA 60.081 57.895 0.00 0.00 43.32 4.30
29 30 2.562912 GAGTACGAACACCGCCGA 59.437 61.111 0.00 0.00 43.32 5.54
30 31 2.872925 CGAGTACGAACACCGCCG 60.873 66.667 0.00 0.00 43.32 6.46
31 32 2.505557 CCGAGTACGAACACCGCC 60.506 66.667 0.00 0.00 43.32 6.13
32 33 2.505557 CCCGAGTACGAACACCGC 60.506 66.667 0.00 0.00 43.32 5.68
33 34 1.443194 CACCCGAGTACGAACACCG 60.443 63.158 0.00 0.00 42.66 4.94
34 35 1.735559 GCACCCGAGTACGAACACC 60.736 63.158 0.00 0.00 42.66 4.16
35 36 0.731855 GAGCACCCGAGTACGAACAC 60.732 60.000 0.00 0.00 42.66 3.32
36 37 0.892358 AGAGCACCCGAGTACGAACA 60.892 55.000 0.00 0.00 42.66 3.18
37 38 0.243095 AAGAGCACCCGAGTACGAAC 59.757 55.000 0.00 0.00 42.66 3.95
38 39 0.963962 AAAGAGCACCCGAGTACGAA 59.036 50.000 0.00 0.00 42.66 3.85
39 40 0.242825 CAAAGAGCACCCGAGTACGA 59.757 55.000 0.00 0.00 42.66 3.43
40 41 0.736325 CCAAAGAGCACCCGAGTACG 60.736 60.000 0.00 0.00 39.43 3.67
41 42 0.320697 ACCAAAGAGCACCCGAGTAC 59.679 55.000 0.00 0.00 0.00 2.73
42 43 0.320374 CACCAAAGAGCACCCGAGTA 59.680 55.000 0.00 0.00 0.00 2.59
43 44 1.071471 CACCAAAGAGCACCCGAGT 59.929 57.895 0.00 0.00 0.00 4.18
44 45 1.071471 ACACCAAAGAGCACCCGAG 59.929 57.895 0.00 0.00 0.00 4.63
45 46 1.227823 CACACCAAAGAGCACCCGA 60.228 57.895 0.00 0.00 0.00 5.14
46 47 1.507141 GACACACCAAAGAGCACCCG 61.507 60.000 0.00 0.00 0.00 5.28
47 48 0.179018 AGACACACCAAAGAGCACCC 60.179 55.000 0.00 0.00 0.00 4.61
48 49 1.202698 AGAGACACACCAAAGAGCACC 60.203 52.381 0.00 0.00 0.00 5.01
49 50 1.869767 CAGAGACACACCAAAGAGCAC 59.130 52.381 0.00 0.00 0.00 4.40
50 51 1.811558 GCAGAGACACACCAAAGAGCA 60.812 52.381 0.00 0.00 0.00 4.26
51 52 0.871057 GCAGAGACACACCAAAGAGC 59.129 55.000 0.00 0.00 0.00 4.09
52 53 2.540265 AGCAGAGACACACCAAAGAG 57.460 50.000 0.00 0.00 0.00 2.85
53 54 2.564771 CAAGCAGAGACACACCAAAGA 58.435 47.619 0.00 0.00 0.00 2.52
54 55 1.605710 CCAAGCAGAGACACACCAAAG 59.394 52.381 0.00 0.00 0.00 2.77
55 56 1.679139 CCAAGCAGAGACACACCAAA 58.321 50.000 0.00 0.00 0.00 3.28
56 57 0.819259 GCCAAGCAGAGACACACCAA 60.819 55.000 0.00 0.00 0.00 3.67
57 58 1.227943 GCCAAGCAGAGACACACCA 60.228 57.895 0.00 0.00 0.00 4.17
58 59 2.320587 CGCCAAGCAGAGACACACC 61.321 63.158 0.00 0.00 0.00 4.16
59 60 0.671781 ATCGCCAAGCAGAGACACAC 60.672 55.000 0.00 0.00 0.00 3.82
60 61 0.671472 CATCGCCAAGCAGAGACACA 60.671 55.000 0.00 0.00 0.00 3.72
61 62 1.975363 GCATCGCCAAGCAGAGACAC 61.975 60.000 0.00 0.00 0.00 3.67
62 63 1.742880 GCATCGCCAAGCAGAGACA 60.743 57.895 0.00 0.00 0.00 3.41
63 64 3.096791 GCATCGCCAAGCAGAGAC 58.903 61.111 0.00 0.00 0.00 3.36
74 75 3.127533 AAAGACGCAGGGCATCGC 61.128 61.111 0.00 0.00 0.00 4.58
75 76 2.787249 CAAAGACGCAGGGCATCG 59.213 61.111 0.00 0.00 0.00 3.84
76 77 2.486966 GCAAAGACGCAGGGCATC 59.513 61.111 0.00 0.00 0.00 3.91
77 78 3.064324 GGCAAAGACGCAGGGCAT 61.064 61.111 0.00 0.00 0.00 4.40
82 83 3.726517 CCACCGGCAAAGACGCAG 61.727 66.667 0.00 0.00 29.68 5.18
100 101 3.337889 CGTCACGGCACCTGTGTG 61.338 66.667 4.30 0.00 45.65 3.82
101 102 3.785189 GACGTCACGGCACCTGTGT 62.785 63.158 11.55 1.32 38.48 3.72
102 103 3.036084 GACGTCACGGCACCTGTG 61.036 66.667 11.55 0.00 33.63 3.66
103 104 4.640855 CGACGTCACGGCACCTGT 62.641 66.667 17.16 0.00 32.52 4.00
104 105 4.640855 ACGACGTCACGGCACCTG 62.641 66.667 17.16 0.00 32.52 4.00
105 106 4.338539 GACGACGTCACGGCACCT 62.339 66.667 22.66 0.00 41.34 4.00
106 107 4.338539 AGACGACGTCACGGCACC 62.339 66.667 28.31 0.00 44.44 5.01
107 108 2.799916 GAGACGACGTCACGGCAC 60.800 66.667 28.31 0.00 44.44 5.01
108 109 4.379143 CGAGACGACGTCACGGCA 62.379 66.667 31.40 0.00 44.44 5.69
111 112 2.202146 GACCGAGACGACGTCACG 60.202 66.667 31.86 31.86 43.84 4.35
112 113 1.132232 GAGACCGAGACGACGTCAC 59.868 63.158 28.31 21.38 34.60 3.67
113 114 2.378084 CGAGACCGAGACGACGTCA 61.378 63.158 28.31 0.00 38.22 4.35
114 115 2.394912 CGAGACCGAGACGACGTC 59.605 66.667 20.25 20.25 38.22 4.34
115 116 3.786586 GCGAGACCGAGACGACGT 61.787 66.667 0.00 0.00 38.22 4.34
116 117 4.517703 GGCGAGACCGAGACGACG 62.518 72.222 0.00 0.00 38.22 5.12
117 118 3.126225 AGGCGAGACCGAGACGAC 61.126 66.667 0.00 0.00 46.52 4.34
118 119 3.125573 CAGGCGAGACCGAGACGA 61.126 66.667 0.00 0.00 46.52 4.20
119 120 4.180946 CCAGGCGAGACCGAGACG 62.181 72.222 0.00 0.00 46.52 4.18
120 121 4.500116 GCCAGGCGAGACCGAGAC 62.500 72.222 0.00 0.00 46.52 3.36
124 125 4.394712 AAAGGCCAGGCGAGACCG 62.395 66.667 5.01 0.00 46.52 4.79
125 126 2.436824 GAAAGGCCAGGCGAGACC 60.437 66.667 5.01 0.00 39.61 3.85
126 127 2.781595 TTCGAAAGGCCAGGCGAGAC 62.782 60.000 5.01 0.00 34.01 3.36
127 128 1.899437 ATTCGAAAGGCCAGGCGAGA 61.899 55.000 5.01 2.40 34.01 4.04
128 129 1.450312 ATTCGAAAGGCCAGGCGAG 60.450 57.895 5.01 0.00 34.01 5.03
129 130 1.745115 CATTCGAAAGGCCAGGCGA 60.745 57.895 5.01 7.73 0.00 5.54
130 131 0.742990 TACATTCGAAAGGCCAGGCG 60.743 55.000 5.01 4.98 0.00 5.52
131 132 0.733150 GTACATTCGAAAGGCCAGGC 59.267 55.000 5.01 1.26 0.00 4.85
132 133 1.379527 GGTACATTCGAAAGGCCAGG 58.620 55.000 5.01 0.00 0.00 4.45
133 134 1.379527 GGGTACATTCGAAAGGCCAG 58.620 55.000 5.01 0.00 0.00 4.85
134 135 0.034863 GGGGTACATTCGAAAGGCCA 60.035 55.000 5.01 0.00 0.00 5.36
135 136 0.750546 GGGGGTACATTCGAAAGGCC 60.751 60.000 0.00 4.83 0.00 5.19
136 137 1.093496 CGGGGGTACATTCGAAAGGC 61.093 60.000 0.00 0.00 0.00 4.35
137 138 0.538118 TCGGGGGTACATTCGAAAGG 59.462 55.000 0.00 0.00 0.00 3.11
138 139 1.066716 TGTCGGGGGTACATTCGAAAG 60.067 52.381 0.00 0.00 33.33 2.62
139 140 0.975135 TGTCGGGGGTACATTCGAAA 59.025 50.000 0.00 0.00 33.33 3.46
140 141 0.247185 GTGTCGGGGGTACATTCGAA 59.753 55.000 0.00 0.00 33.33 3.71
141 142 0.899253 TGTGTCGGGGGTACATTCGA 60.899 55.000 0.00 0.00 0.00 3.71
142 143 0.459585 CTGTGTCGGGGGTACATTCG 60.460 60.000 0.00 0.00 0.00 3.34
143 144 0.107848 CCTGTGTCGGGGGTACATTC 60.108 60.000 0.00 0.00 0.00 2.67
144 145 0.838987 ACCTGTGTCGGGGGTACATT 60.839 55.000 0.00 0.00 33.40 2.71
145 146 1.229400 ACCTGTGTCGGGGGTACAT 60.229 57.895 0.00 0.00 33.40 2.29
146 147 2.202053 ACCTGTGTCGGGGGTACA 59.798 61.111 0.00 0.00 33.40 2.90
147 148 2.660802 CACCTGTGTCGGGGGTAC 59.339 66.667 0.00 0.00 33.40 3.34
148 149 2.605295 CCACCTGTGTCGGGGGTA 60.605 66.667 0.00 0.00 43.03 3.69
158 159 2.515991 CGCCACAACACCACCTGT 60.516 61.111 0.00 0.00 32.89 4.00
159 160 2.118404 AACGCCACAACACCACCTG 61.118 57.895 0.00 0.00 0.00 4.00
160 161 2.118404 CAACGCCACAACACCACCT 61.118 57.895 0.00 0.00 0.00 4.00
161 162 1.096386 TACAACGCCACAACACCACC 61.096 55.000 0.00 0.00 0.00 4.61
162 163 0.028374 GTACAACGCCACAACACCAC 59.972 55.000 0.00 0.00 0.00 4.16
163 164 0.107606 AGTACAACGCCACAACACCA 60.108 50.000 0.00 0.00 0.00 4.17
164 165 1.018910 AAGTACAACGCCACAACACC 58.981 50.000 0.00 0.00 0.00 4.16
165 166 2.353579 AGAAAGTACAACGCCACAACAC 59.646 45.455 0.00 0.00 0.00 3.32
166 167 2.610374 GAGAAAGTACAACGCCACAACA 59.390 45.455 0.00 0.00 0.00 3.33
167 168 2.348218 CGAGAAAGTACAACGCCACAAC 60.348 50.000 0.00 0.00 0.00 3.32
168 169 1.862201 CGAGAAAGTACAACGCCACAA 59.138 47.619 0.00 0.00 0.00 3.33
169 170 1.493772 CGAGAAAGTACAACGCCACA 58.506 50.000 0.00 0.00 0.00 4.17
170 171 0.788391 CCGAGAAAGTACAACGCCAC 59.212 55.000 0.00 0.00 0.00 5.01
171 172 0.947180 GCCGAGAAAGTACAACGCCA 60.947 55.000 0.00 0.00 0.00 5.69
172 173 0.669625 AGCCGAGAAAGTACAACGCC 60.670 55.000 0.00 0.00 0.00 5.68
173 174 0.438830 CAGCCGAGAAAGTACAACGC 59.561 55.000 0.00 0.00 0.00 4.84
174 175 1.455786 CACAGCCGAGAAAGTACAACG 59.544 52.381 0.00 0.00 0.00 4.10
175 176 1.194772 GCACAGCCGAGAAAGTACAAC 59.805 52.381 0.00 0.00 0.00 3.32
176 177 1.508632 GCACAGCCGAGAAAGTACAA 58.491 50.000 0.00 0.00 0.00 2.41
177 178 0.666274 CGCACAGCCGAGAAAGTACA 60.666 55.000 0.00 0.00 0.00 2.90
178 179 1.352156 CCGCACAGCCGAGAAAGTAC 61.352 60.000 0.00 0.00 0.00 2.73
179 180 1.080093 CCGCACAGCCGAGAAAGTA 60.080 57.895 0.00 0.00 0.00 2.24
180 181 2.357517 CCGCACAGCCGAGAAAGT 60.358 61.111 0.00 0.00 0.00 2.66
181 182 2.357517 ACCGCACAGCCGAGAAAG 60.358 61.111 0.00 0.00 0.00 2.62
182 183 2.664851 CACCGCACAGCCGAGAAA 60.665 61.111 0.00 0.00 0.00 2.52
189 190 2.146073 ATCAAAAGGCACCGCACAGC 62.146 55.000 0.00 0.00 0.00 4.40
190 191 0.314935 AATCAAAAGGCACCGCACAG 59.685 50.000 0.00 0.00 0.00 3.66
191 192 0.031857 CAATCAAAAGGCACCGCACA 59.968 50.000 0.00 0.00 0.00 4.57
192 193 1.284297 GCAATCAAAAGGCACCGCAC 61.284 55.000 0.00 0.00 0.00 5.34
193 194 1.006337 GCAATCAAAAGGCACCGCA 60.006 52.632 0.00 0.00 0.00 5.69
194 195 2.088178 CGCAATCAAAAGGCACCGC 61.088 57.895 0.00 0.00 0.00 5.68
195 196 0.729140 GACGCAATCAAAAGGCACCG 60.729 55.000 0.00 0.00 0.00 4.94
196 197 0.729140 CGACGCAATCAAAAGGCACC 60.729 55.000 0.00 0.00 0.00 5.01
197 198 0.237235 TCGACGCAATCAAAAGGCAC 59.763 50.000 0.00 0.00 0.00 5.01
198 199 0.237235 GTCGACGCAATCAAAAGGCA 59.763 50.000 0.00 0.00 0.00 4.75
199 200 0.789383 CGTCGACGCAATCAAAAGGC 60.789 55.000 26.59 0.00 0.00 4.35
200 201 0.787787 TCGTCGACGCAATCAAAAGG 59.212 50.000 32.19 2.59 39.60 3.11
201 202 1.853230 GTCGTCGACGCAATCAAAAG 58.147 50.000 32.19 3.14 39.60 2.27
212 213 4.994201 TGGCACTGCGTCGTCGAC 62.994 66.667 15.51 15.51 39.71 4.20
213 214 4.050934 ATGGCACTGCGTCGTCGA 62.051 61.111 6.17 0.00 39.71 4.20
214 215 3.842126 CATGGCACTGCGTCGTCG 61.842 66.667 0.00 0.00 40.37 5.12
215 216 3.490759 CCATGGCACTGCGTCGTC 61.491 66.667 0.00 0.00 0.00 4.20
216 217 3.825160 AACCATGGCACTGCGTCGT 62.825 57.895 13.04 0.00 0.00 4.34
217 218 2.616330 AAACCATGGCACTGCGTCG 61.616 57.895 13.04 0.00 0.00 5.12
218 219 1.081242 CAAACCATGGCACTGCGTC 60.081 57.895 13.04 0.00 0.00 5.19
219 220 2.563798 CCAAACCATGGCACTGCGT 61.564 57.895 13.04 0.00 43.80 5.24
220 221 2.259204 CCAAACCATGGCACTGCG 59.741 61.111 13.04 0.00 43.80 5.18
228 229 1.098050 GCCTAGCAGACCAAACCATG 58.902 55.000 0.00 0.00 0.00 3.66
229 230 0.392998 CGCCTAGCAGACCAAACCAT 60.393 55.000 0.00 0.00 0.00 3.55
230 231 1.003839 CGCCTAGCAGACCAAACCA 60.004 57.895 0.00 0.00 0.00 3.67
231 232 0.107654 ATCGCCTAGCAGACCAAACC 60.108 55.000 0.00 0.00 0.00 3.27
232 233 1.009829 CATCGCCTAGCAGACCAAAC 58.990 55.000 0.00 0.00 0.00 2.93
233 234 0.744414 GCATCGCCTAGCAGACCAAA 60.744 55.000 0.00 0.00 0.00 3.28
234 235 1.153369 GCATCGCCTAGCAGACCAA 60.153 57.895 0.00 0.00 0.00 3.67
235 236 2.501128 GCATCGCCTAGCAGACCA 59.499 61.111 0.00 0.00 0.00 4.02
236 237 2.280457 GGCATCGCCTAGCAGACC 60.280 66.667 0.00 0.00 46.69 3.85
246 247 1.944676 CGTAGTCGAAGGGCATCGC 60.945 63.158 7.01 3.45 42.44 4.58
247 248 1.944676 GCGTAGTCGAAGGGCATCG 60.945 63.158 5.67 5.67 44.04 3.84
248 249 1.591863 GGCGTAGTCGAAGGGCATC 60.592 63.158 0.00 0.00 39.71 3.91
249 250 2.499685 GGCGTAGTCGAAGGGCAT 59.500 61.111 0.00 0.00 39.71 4.40
258 259 1.443872 CTGTGTCACCGGCGTAGTC 60.444 63.158 6.01 0.00 0.00 2.59
259 260 2.649034 CTGTGTCACCGGCGTAGT 59.351 61.111 6.01 0.00 0.00 2.73
260 261 2.126071 CCTGTGTCACCGGCGTAG 60.126 66.667 6.01 0.00 0.00 3.51
261 262 4.367023 GCCTGTGTCACCGGCGTA 62.367 66.667 20.85 0.00 38.67 4.42
265 266 4.742201 CGGAGCCTGTGTCACCGG 62.742 72.222 8.99 8.99 39.92 5.28
267 268 2.357517 CACGGAGCCTGTGTCACC 60.358 66.667 0.00 0.00 32.68 4.02
268 269 2.357517 CCACGGAGCCTGTGTCAC 60.358 66.667 11.64 0.00 35.56 3.67
269 270 4.314440 GCCACGGAGCCTGTGTCA 62.314 66.667 11.64 0.00 35.56 3.58
278 279 4.813526 CGAGACGACGCCACGGAG 62.814 72.222 0.00 0.00 37.61 4.63
298 299 3.659089 ATTCGAAGGGTCACGCGGG 62.659 63.158 12.47 6.51 0.00 6.13
299 300 2.125673 ATTCGAAGGGTCACGCGG 60.126 61.111 12.47 0.00 0.00 6.46
300 301 3.081133 CATTCGAAGGGTCACGCG 58.919 61.111 3.53 3.53 0.00 6.01
301 302 2.785258 GCATTCGAAGGGTCACGC 59.215 61.111 12.28 0.00 0.00 5.34
302 303 3.081133 CGCATTCGAAGGGTCACG 58.919 61.111 12.28 2.55 38.10 4.35
303 304 2.750888 GGCGCATTCGAAGGGTCAC 61.751 63.158 10.83 0.00 38.10 3.67
304 305 2.435938 GGCGCATTCGAAGGGTCA 60.436 61.111 10.83 0.00 38.10 4.02
305 306 3.202706 GGGCGCATTCGAAGGGTC 61.203 66.667 10.83 9.41 38.10 4.46
306 307 4.796495 GGGGCGCATTCGAAGGGT 62.796 66.667 10.83 0.00 38.10 4.34
307 308 4.794648 TGGGGCGCATTCGAAGGG 62.795 66.667 10.83 9.23 38.10 3.95
308 309 2.516930 ATGGGGCGCATTCGAAGG 60.517 61.111 11.73 5.24 38.10 3.46
309 310 1.819208 TCATGGGGCGCATTCGAAG 60.819 57.895 15.06 3.40 38.10 3.79
310 311 2.112198 GTCATGGGGCGCATTCGAA 61.112 57.895 15.06 0.00 38.10 3.71
311 312 2.513666 GTCATGGGGCGCATTCGA 60.514 61.111 15.06 7.38 38.10 3.71
312 313 2.823593 TGTCATGGGGCGCATTCG 60.824 61.111 15.06 4.91 39.07 3.34
313 314 1.996786 CTGTGTCATGGGGCGCATTC 61.997 60.000 15.06 11.27 0.00 2.67
314 315 2.035469 TGTGTCATGGGGCGCATT 59.965 55.556 15.06 0.00 0.00 3.56
315 316 2.438975 CTGTGTCATGGGGCGCAT 60.439 61.111 11.73 11.73 0.00 4.73
316 317 4.720902 CCTGTGTCATGGGGCGCA 62.721 66.667 10.83 6.74 0.00 6.09
317 318 4.722700 ACCTGTGTCATGGGGCGC 62.723 66.667 0.00 0.00 0.00 6.53
318 319 2.747460 CACCTGTGTCATGGGGCG 60.747 66.667 0.00 0.00 0.00 6.13
319 320 2.361610 CCACCTGTGTCATGGGGC 60.362 66.667 0.00 0.00 0.00 5.80
320 321 1.303561 CACCACCTGTGTCATGGGG 60.304 63.158 0.00 0.00 40.26 4.96
321 322 4.402851 CACCACCTGTGTCATGGG 57.597 61.111 0.00 0.00 40.26 4.00
341 342 4.077188 GAGACTGCACAACGCCGC 62.077 66.667 0.00 0.00 41.33 6.53
342 343 3.767230 CGAGACTGCACAACGCCG 61.767 66.667 0.00 0.00 41.33 6.46
343 344 3.414700 CCGAGACTGCACAACGCC 61.415 66.667 0.00 0.00 41.33 5.68
344 345 1.738099 ATCCGAGACTGCACAACGC 60.738 57.895 0.00 0.00 42.89 4.84
345 346 4.578913 ATCCGAGACTGCACAACG 57.421 55.556 0.00 0.00 0.00 4.10
597 598 3.597182 ACCCCATGGTTGGAATCTTTTT 58.403 40.909 11.73 0.00 44.75 1.94
598 599 3.274281 ACCCCATGGTTGGAATCTTTT 57.726 42.857 11.73 0.00 44.75 2.27
686 688 8.950210 TGAGCTCTAAAATTAGAATGTTGAAGG 58.050 33.333 16.19 0.00 39.15 3.46
799 810 0.105593 CTGTGGAGGGGATGTGATCG 59.894 60.000 0.00 0.00 0.00 3.69
872 883 1.743252 GTTCTCCTCCCTTGCTGCG 60.743 63.158 0.00 0.00 0.00 5.18
921 932 4.679372 GCTCTGTACAATCCAGAAGACTCC 60.679 50.000 0.00 0.00 38.42 3.85
939 950 1.554836 TCTCCAACCTCTCTGCTCTG 58.445 55.000 0.00 0.00 0.00 3.35
949 960 0.898320 CACCACGAGATCTCCAACCT 59.102 55.000 17.13 0.00 0.00 3.50
1160 1174 1.886542 ACAAAACGAATCCTCCTTGGC 59.113 47.619 0.00 0.00 35.26 4.52
1203 1217 0.035152 TACAGGGACAAGCATGCCAG 60.035 55.000 15.66 9.93 0.00 4.85
1257 1273 8.278639 TGGTCCATATTTAAATACCACTGTGAT 58.721 33.333 14.06 0.00 0.00 3.06
1263 1279 8.514330 TTCTGTGGTCCATATTTAAATACCAC 57.486 34.615 28.73 28.73 44.59 4.16
1283 1299 7.161404 TCAAACAGTCTGCTACAATATTCTGT 58.839 34.615 0.00 0.00 36.64 3.41
1288 1304 8.177663 CGAAATTCAAACAGTCTGCTACAATAT 58.822 33.333 0.00 0.00 0.00 1.28
1294 1310 4.149922 CGACGAAATTCAAACAGTCTGCTA 59.850 41.667 0.00 0.00 0.00 3.49
1399 1416 3.385433 GGATGATGATTGCCCATGTTTCA 59.615 43.478 0.00 0.00 0.00 2.69
1597 1614 3.131933 TGTTTGTCATTGGGTTGTTCCTG 59.868 43.478 0.00 0.00 36.25 3.86
1642 1659 8.306038 TGAAGCAAAATTAGCAGATTGTTACAT 58.694 29.630 5.70 0.00 0.00 2.29
1722 1739 1.154035 GCGGTTGCCTTGAAATCCG 60.154 57.895 0.00 0.00 40.72 4.18
1787 1804 1.604378 CCTACCAAGCTGACCAGGG 59.396 63.158 0.00 0.00 0.00 4.45
1912 1929 9.260002 GTAATTTGGATGTTGTCAAGTTTGAAT 57.740 29.630 0.00 0.00 39.21 2.57
1918 1935 6.959639 AGTGTAATTTGGATGTTGTCAAGT 57.040 33.333 0.00 0.00 0.00 3.16
1919 1936 7.015289 CGTAGTGTAATTTGGATGTTGTCAAG 58.985 38.462 0.00 0.00 0.00 3.02
1922 1939 6.476243 ACGTAGTGTAATTTGGATGTTGTC 57.524 37.500 0.00 0.00 42.51 3.18
1924 1941 7.354025 TGTACGTAGTGTAATTTGGATGTTG 57.646 36.000 0.00 0.00 45.73 3.33
2052 2114 5.991606 TGATGCTATACTGTTGCCTGAATAC 59.008 40.000 0.00 0.00 0.00 1.89
2159 2221 4.955811 AGTGGTGTTTGATCAGTAGTGA 57.044 40.909 1.95 1.95 37.02 3.41
2174 2236 5.680619 TCCTTATATGCCAACTTAGTGGTG 58.319 41.667 0.00 0.00 41.12 4.17
2192 2254 2.632996 CCGTGGGCTATCTTCATCCTTA 59.367 50.000 0.00 0.00 0.00 2.69
2301 2363 5.105473 TGAGAGTTTAGGGTTGTATTCCTCG 60.105 44.000 0.00 0.00 34.75 4.63
2580 2642 8.629158 AGCATATAGGAACAATATTCGCAAAAA 58.371 29.630 0.00 0.00 0.00 1.94
2581 2643 8.165239 AGCATATAGGAACAATATTCGCAAAA 57.835 30.769 0.00 0.00 0.00 2.44
2582 2644 7.744087 AGCATATAGGAACAATATTCGCAAA 57.256 32.000 0.00 0.00 0.00 3.68
2583 2645 7.661437 AGAAGCATATAGGAACAATATTCGCAA 59.339 33.333 0.00 0.00 0.00 4.85
2584 2646 7.161404 AGAAGCATATAGGAACAATATTCGCA 58.839 34.615 0.00 0.00 0.00 5.10
2585 2647 7.602517 AGAAGCATATAGGAACAATATTCGC 57.397 36.000 0.00 0.00 0.00 4.70
2586 2648 8.660373 GGAAGAAGCATATAGGAACAATATTCG 58.340 37.037 0.00 0.00 0.00 3.34
2587 2649 8.951243 GGGAAGAAGCATATAGGAACAATATTC 58.049 37.037 0.00 0.00 0.00 1.75
2588 2650 7.890655 GGGGAAGAAGCATATAGGAACAATATT 59.109 37.037 0.00 0.00 0.00 1.28
2589 2651 7.018550 TGGGGAAGAAGCATATAGGAACAATAT 59.981 37.037 0.00 0.00 0.00 1.28
2590 2652 6.331572 TGGGGAAGAAGCATATAGGAACAATA 59.668 38.462 0.00 0.00 0.00 1.90
2591 2653 5.134339 TGGGGAAGAAGCATATAGGAACAAT 59.866 40.000 0.00 0.00 0.00 2.71
2592 2654 4.476846 TGGGGAAGAAGCATATAGGAACAA 59.523 41.667 0.00 0.00 0.00 2.83
2593 2655 4.044308 TGGGGAAGAAGCATATAGGAACA 58.956 43.478 0.00 0.00 0.00 3.18
2594 2656 4.706842 TGGGGAAGAAGCATATAGGAAC 57.293 45.455 0.00 0.00 0.00 3.62
2595 2657 5.849475 TGTATGGGGAAGAAGCATATAGGAA 59.151 40.000 0.00 0.00 0.00 3.36
2596 2658 5.411493 TGTATGGGGAAGAAGCATATAGGA 58.589 41.667 0.00 0.00 0.00 2.94
2597 2659 5.762179 TGTATGGGGAAGAAGCATATAGG 57.238 43.478 0.00 0.00 0.00 2.57
2598 2660 9.334947 CATTATGTATGGGGAAGAAGCATATAG 57.665 37.037 0.00 0.00 0.00 1.31
2599 2661 7.775093 GCATTATGTATGGGGAAGAAGCATATA 59.225 37.037 0.00 0.00 34.66 0.86
2600 2662 6.604795 GCATTATGTATGGGGAAGAAGCATAT 59.395 38.462 0.00 0.00 34.66 1.78
2601 2663 5.945784 GCATTATGTATGGGGAAGAAGCATA 59.054 40.000 0.00 0.00 34.66 3.14
2645 2707 3.988379 TCTTGTCGCAAGCATCTTTTT 57.012 38.095 12.81 0.00 37.18 1.94
2734 2796 4.583907 GGGTCTACTAACTCATGGTACCTC 59.416 50.000 14.36 0.00 0.00 3.85
2869 2931 0.101759 CTGCAAGGAATCCCAATGCG 59.898 55.000 14.70 8.11 45.15 4.73
2893 2955 2.222227 TCTCTTCACAGCTAGCAGGA 57.778 50.000 18.83 8.21 0.00 3.86
2896 2958 2.634940 AGGTTTCTCTTCACAGCTAGCA 59.365 45.455 18.83 0.00 0.00 3.49
2900 2962 5.163602 CGATACTAGGTTTCTCTTCACAGCT 60.164 44.000 0.00 0.00 0.00 4.24
2938 3000 2.004408 ATGGGGGATCTTCAGCCTGC 62.004 60.000 0.00 0.00 0.00 4.85
2963 3025 4.511082 GCTCTTATCTTGCTGAGTTCCATC 59.489 45.833 0.00 0.00 0.00 3.51
3082 3144 4.956075 TCAGTAGGATCTGTAATGCACTGA 59.044 41.667 0.00 0.00 38.95 3.41
3149 3211 4.178956 ACAAGTCAAGGGAGCCTAAAAA 57.821 40.909 0.00 0.00 31.13 1.94
3190 3252 3.959495 ATGACAATTCAGCCCTATGGT 57.041 42.857 0.00 0.00 34.35 3.55
3218 3280 7.593825 ACAAGAATGCCATTTACACTTTCTAC 58.406 34.615 0.00 0.00 30.32 2.59
3374 3436 5.067153 CCTGTGATCTGGTTCTAGTCAGTAG 59.933 48.000 0.00 0.00 33.13 2.57
3441 3503 8.424918 TGTTCTATCCAATCCTTCTCATACTTC 58.575 37.037 0.00 0.00 0.00 3.01
3588 3652 7.102993 TCAGAAGAATGATAATTGGTCGTGAA 58.897 34.615 0.00 0.00 0.00 3.18
3624 3688 1.471684 CTGTTTGAGATTGGAGCTGGC 59.528 52.381 0.00 0.00 0.00 4.85
3719 3783 5.043762 TGATCTTAAACCTTCCCCTATGGT 58.956 41.667 0.00 0.00 37.22 3.55
3767 3837 3.608008 GCTTTGAGCTTAGTGAGTTGCAC 60.608 47.826 0.00 0.00 42.20 4.57
3830 3900 8.887264 TTCATCCTAGATCTCCTACTTTATCC 57.113 38.462 0.00 0.00 0.00 2.59
3886 3957 8.138928 TCCCTTCACTGGACATATAAGATATG 57.861 38.462 5.16 5.16 0.00 1.78
3930 4004 7.606135 TTGGAATGCAATCAAATATCCTGAT 57.394 32.000 3.77 0.00 34.97 2.90
3931 4005 7.342541 TCTTTGGAATGCAATCAAATATCCTGA 59.657 33.333 3.77 0.06 31.21 3.86
4099 4174 4.737855 TGCCTGGTAAACTGACTATCTC 57.262 45.455 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.