Multiple sequence alignment - TraesCS1A01G066400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G066400 chr1A 100.000 5188 0 0 1 5188 48978574 48983761 0.000000e+00 9581.0
1 TraesCS1A01G066400 chr1A 85.019 267 33 5 1045 1309 101767629 101767368 1.110000e-66 265.0
2 TraesCS1A01G066400 chr1A 93.023 43 3 0 4884 4926 530755775 530755817 4.340000e-06 63.9
3 TraesCS1A01G066400 chr1B 91.727 2623 132 43 2346 4886 69541563 69544182 0.000000e+00 3563.0
4 TraesCS1A01G066400 chr1B 88.934 1473 82 28 1 1402 69539116 69540578 0.000000e+00 1742.0
5 TraesCS1A01G066400 chr1B 85.968 506 40 13 1438 1925 69540584 69541076 3.580000e-141 512.0
6 TraesCS1A01G066400 chr1B 85.768 267 31 5 1045 1309 163100379 163100118 5.120000e-70 276.0
7 TraesCS1A01G066400 chr1B 97.321 112 3 0 2240 2351 669891466 669891577 1.910000e-44 191.0
8 TraesCS1A01G066400 chr1B 91.729 133 9 2 2221 2353 24986657 24986527 3.190000e-42 183.0
9 TraesCS1A01G066400 chr1B 87.919 149 11 2 2094 2242 69541423 69541564 8.930000e-38 169.0
10 TraesCS1A01G066400 chr1B 76.000 225 43 9 4920 5142 600266622 600266837 7.100000e-19 106.0
11 TraesCS1A01G066400 chr1D 94.976 1851 70 13 2428 4263 49420837 49422679 0.000000e+00 2881.0
12 TraesCS1A01G066400 chr1D 88.798 1464 80 33 1 1402 49417778 49419219 0.000000e+00 1718.0
13 TraesCS1A01G066400 chr1D 86.066 854 53 28 1438 2242 49419976 49420812 0.000000e+00 857.0
14 TraesCS1A01G066400 chr1D 86.000 500 42 11 1438 1925 49419222 49419705 1.290000e-140 510.0
15 TraesCS1A01G066400 chr1D 95.000 100 5 0 4695 4794 49423091 49423190 1.930000e-34 158.0
16 TraesCS1A01G066400 chr4D 88.764 267 26 4 4926 5188 509505366 509505632 1.800000e-84 324.0
17 TraesCS1A01G066400 chr4D 100.000 43 0 0 1405 1447 352142551 352142509 4.310000e-11 80.5
18 TraesCS1A01G066400 chr7A 87.313 268 31 3 4922 5187 130501015 130500749 2.350000e-78 303.0
19 TraesCS1A01G066400 chr7A 98.198 111 2 0 2238 2348 513215695 513215585 1.470000e-45 195.0
20 TraesCS1A01G066400 chr7A 90.361 83 7 1 4695 4776 323433874 323433956 1.980000e-19 108.0
21 TraesCS1A01G066400 chr5D 86.364 264 32 4 4927 5188 524331275 524331536 8.500000e-73 285.0
22 TraesCS1A01G066400 chr5D 97.674 43 1 0 1405 1447 45483744 45483786 2.000000e-09 75.0
23 TraesCS1A01G066400 chr7B 99.083 109 1 0 2241 2349 72021332 72021440 4.100000e-46 196.0
24 TraesCS1A01G066400 chr7B 98.182 110 2 0 2239 2348 108403268 108403159 5.300000e-45 193.0
25 TraesCS1A01G066400 chr7B 78.927 261 41 10 4926 5180 143058939 143059191 1.160000e-36 165.0
26 TraesCS1A01G066400 chr7B 90.361 83 7 1 4695 4776 275461403 275461321 1.980000e-19 108.0
27 TraesCS1A01G066400 chr7D 97.321 112 3 0 2237 2348 227507231 227507120 1.910000e-44 191.0
28 TraesCS1A01G066400 chr7D 87.952 83 9 1 4695 4776 285229145 285229227 4.280000e-16 97.1
29 TraesCS1A01G066400 chr3B 95.726 117 5 0 2233 2349 557774646 557774762 6.860000e-44 189.0
30 TraesCS1A01G066400 chr4A 92.857 126 9 0 2233 2358 528606338 528606213 3.190000e-42 183.0
31 TraesCS1A01G066400 chr4A 92.857 126 9 0 2233 2358 528646320 528646195 3.190000e-42 183.0
32 TraesCS1A01G066400 chr6D 89.157 83 8 1 4695 4776 141132108 141132190 9.190000e-18 102.0
33 TraesCS1A01G066400 chr5A 87.805 82 10 0 4695 4776 467577927 467578008 4.280000e-16 97.1
34 TraesCS1A01G066400 chr5A 92.453 53 4 0 4604 4656 520668949 520668897 5.570000e-10 76.8
35 TraesCS1A01G066400 chr3D 88.608 79 8 1 4601 4679 604884291 604884214 1.540000e-15 95.3
36 TraesCS1A01G066400 chr3D 95.556 45 2 0 1405 1449 105151090 105151134 7.210000e-09 73.1
37 TraesCS1A01G066400 chr3D 95.556 45 2 0 1405 1449 105182975 105183019 7.210000e-09 73.1
38 TraesCS1A01G066400 chr3D 95.556 45 2 0 1405 1449 105212700 105212744 7.210000e-09 73.1
39 TraesCS1A01G066400 chr3D 95.652 46 0 2 1406 1451 420822318 420822275 7.210000e-09 73.1
40 TraesCS1A01G066400 chr3D 90.566 53 4 1 1405 1456 266641217 266641165 9.320000e-08 69.4
41 TraesCS1A01G066400 chr2B 86.905 84 9 2 4695 4776 256951928 256952011 5.530000e-15 93.5
42 TraesCS1A01G066400 chr2A 86.905 84 9 2 4695 4776 231349850 231349933 5.530000e-15 93.5
43 TraesCS1A01G066400 chr2D 85.714 84 10 2 4695 4776 203042298 203042381 2.570000e-13 87.9
44 TraesCS1A01G066400 chr2D 89.091 55 5 1 1406 1459 509477690 509477636 3.350000e-07 67.6
45 TraesCS1A01G066400 chr6A 85.366 82 10 2 4696 4776 185315645 185315725 3.330000e-12 84.2
46 TraesCS1A01G066400 chr4B 97.674 43 1 0 1405 1447 386989076 386989034 2.000000e-09 75.0
47 TraesCS1A01G066400 chr5B 94.595 37 2 0 4695 4731 491239979 491239943 2.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G066400 chr1A 48978574 48983761 5187 False 9581.0 9581 100.000 1 5188 1 chr1A.!!$F1 5187
1 TraesCS1A01G066400 chr1B 69539116 69544182 5066 False 1496.5 3563 88.637 1 4886 4 chr1B.!!$F3 4885
2 TraesCS1A01G066400 chr1D 49417778 49423190 5412 False 1224.8 2881 90.168 1 4794 5 chr1D.!!$F1 4793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 998 0.250381 AAACACATTCCCGCCACGTA 60.250 50.0 0.00 0.00 0.00 3.57 F
2256 3170 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
2257 3171 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 F
3647 4583 0.112995 AGGATGGTGTGGCATGTGTT 59.887 50.0 0.00 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 3250 0.032416 TTTCCCTCCTACTCCCTCCG 60.032 60.000 0.0 0.0 0.0 4.63 R
3623 4559 0.107508 ATGCCACACCATCCTCTTCG 60.108 55.000 0.0 0.0 0.0 3.79 R
3821 4757 1.375140 CATCCCCTCGGCATCATCG 60.375 63.158 0.0 0.0 0.0 3.84 R
4914 5942 0.104487 GCGCTACTCTAGTTTCCCCC 59.896 60.000 0.0 0.0 0.0 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 6.305638 TCGAAGATAAATCATCTCGCAATACG 59.694 38.462 0.00 0.00 43.56 3.06
100 101 6.923508 AGATAAATCATCTCGCAATACGTTCA 59.076 34.615 0.00 0.00 40.09 3.18
110 115 6.252869 TCTCGCAATACGTTCATAAACTTCTC 59.747 38.462 0.00 0.00 44.19 2.87
111 116 5.290158 TCGCAATACGTTCATAAACTTCTCC 59.710 40.000 0.00 0.00 44.19 3.71
113 118 6.183360 CGCAATACGTTCATAAACTTCTCCTT 60.183 38.462 0.00 0.00 36.87 3.36
114 119 6.961554 GCAATACGTTCATAAACTTCTCCTTG 59.038 38.462 0.00 0.00 32.95 3.61
116 121 5.924475 ACGTTCATAAACTTCTCCTTGTG 57.076 39.130 0.00 0.00 32.95 3.33
117 122 5.365619 ACGTTCATAAACTTCTCCTTGTGT 58.634 37.500 0.00 0.00 32.95 3.72
118 123 5.820947 ACGTTCATAAACTTCTCCTTGTGTT 59.179 36.000 0.00 0.00 32.95 3.32
119 124 6.317893 ACGTTCATAAACTTCTCCTTGTGTTT 59.682 34.615 0.00 0.00 36.69 2.83
120 125 7.496591 ACGTTCATAAACTTCTCCTTGTGTTTA 59.503 33.333 0.00 0.00 38.62 2.01
121 126 7.797123 CGTTCATAAACTTCTCCTTGTGTTTAC 59.203 37.037 0.00 0.00 37.59 2.01
129 134 2.825532 CTCCTTGTGTTTACCCCATTGG 59.174 50.000 0.00 0.00 41.37 3.16
130 135 2.447429 TCCTTGTGTTTACCCCATTGGA 59.553 45.455 3.62 0.00 38.00 3.53
187 192 2.060326 TTAGACTTGAAGACGTGGCG 57.940 50.000 0.00 0.00 0.00 5.69
207 212 2.636830 GATGGGAATATGGATCCAGCG 58.363 52.381 21.33 0.00 38.80 5.18
238 243 2.802816 CAGTGGTCAGCAAGTGAACTAC 59.197 50.000 0.00 0.00 44.16 2.73
262 267 2.586258 ACGATGAGCGCTTCTACAAT 57.414 45.000 13.26 0.00 46.04 2.71
284 289 3.447229 TGAAGGATGCGACTCTGATTACA 59.553 43.478 0.00 0.00 0.00 2.41
380 385 2.860136 TGCTGCGAATAACTCTGAATCG 59.140 45.455 0.00 0.00 36.64 3.34
387 392 3.520290 ATAACTCTGAATCGGCGTCAA 57.480 42.857 6.85 0.00 0.00 3.18
419 424 4.051922 GTGCAAGGACGTGATAGATTAGG 58.948 47.826 0.00 0.00 0.00 2.69
423 428 5.462405 CAAGGACGTGATAGATTAGGTAGC 58.538 45.833 0.00 0.00 0.00 3.58
428 433 6.092533 GGACGTGATAGATTAGGTAGCTAGTC 59.907 46.154 14.69 14.69 0.00 2.59
537 548 1.570967 GGTTGTAACAACCGGCGAC 59.429 57.895 9.30 0.00 0.00 5.19
593 607 1.667724 CGGAAGAGTGTTGATCCATGC 59.332 52.381 0.00 0.00 32.08 4.06
617 636 7.068962 TGCATATGGATGTTGTTCTCAAATGAT 59.931 33.333 4.56 0.00 35.30 2.45
620 639 6.757897 TGGATGTTGTTCTCAAATGATACC 57.242 37.500 0.00 0.00 35.20 2.73
657 676 6.815641 TGCTAACTAGAGATCTTGAGCTTTTG 59.184 38.462 0.00 0.00 0.00 2.44
710 729 7.341445 TGGTAAATAAACCATGCATAACTCC 57.659 36.000 0.00 0.00 44.68 3.85
751 771 5.090652 TGATAGATTTACGAAAATGCCGC 57.909 39.130 0.00 0.00 35.41 6.53
760 780 2.288152 ACGAAAATGCCGCTGTTGAAAT 60.288 40.909 0.00 0.00 0.00 2.17
776 796 9.745880 GCTGTTGAAATAGATTGATTGAATGAT 57.254 29.630 0.00 0.00 0.00 2.45
865 900 1.486726 GATCCCAGTGGTCTACAAGGG 59.513 57.143 8.74 9.74 44.12 3.95
891 926 4.440145 TCCTTTGCAGGATTGGGC 57.560 55.556 0.00 0.00 45.20 5.36
923 958 1.599047 CAGCAACATCCCTCTCGGT 59.401 57.895 0.00 0.00 0.00 4.69
940 975 4.296593 TCCAACGTACGGCGGCAA 62.297 61.111 21.06 1.46 46.52 4.52
941 976 4.079748 CCAACGTACGGCGGCAAC 62.080 66.667 21.06 5.52 46.52 4.17
942 977 3.339464 CAACGTACGGCGGCAACA 61.339 61.111 21.06 0.00 46.52 3.33
943 978 3.340253 AACGTACGGCGGCAACAC 61.340 61.111 21.06 1.91 46.52 3.32
944 979 4.588854 ACGTACGGCGGCAACACA 62.589 61.111 21.06 0.00 46.52 3.72
945 980 3.339464 CGTACGGCGGCAACACAA 61.339 61.111 13.24 0.00 36.85 3.33
963 998 0.250381 AAACACATTCCCGCCACGTA 60.250 50.000 0.00 0.00 0.00 3.57
996 1037 5.163784 GCCCGGTAGAGAACAAATAACTTTC 60.164 44.000 0.00 0.00 0.00 2.62
1013 1068 0.179084 TTCATCGACGCTTCCCATCC 60.179 55.000 0.00 0.00 0.00 3.51
1014 1069 1.043116 TCATCGACGCTTCCCATCCT 61.043 55.000 0.00 0.00 0.00 3.24
1021 1076 1.753368 CGCTTCCCATCCTCTCTCCC 61.753 65.000 0.00 0.00 0.00 4.30
1291 1360 4.681978 ACCTGCCTCAACGTCGGC 62.682 66.667 14.46 14.46 46.46 5.54
1334 1423 0.040067 CCTCTCCGTTTGTTTGCTGC 60.040 55.000 0.00 0.00 0.00 5.25
1348 1437 3.508840 CTGCCCCGTTCATTCGCC 61.509 66.667 0.00 0.00 0.00 5.54
1402 1494 5.243981 AGATCTGTGATGCATGGCTATTAC 58.756 41.667 2.46 0.00 0.00 1.89
1403 1495 3.743521 TCTGTGATGCATGGCTATTACC 58.256 45.455 2.46 0.00 0.00 2.85
1404 1496 2.816087 CTGTGATGCATGGCTATTACCC 59.184 50.000 2.46 0.00 0.00 3.69
1406 1498 3.221771 GTGATGCATGGCTATTACCCAA 58.778 45.455 2.46 0.00 35.67 4.12
1407 1499 3.636300 GTGATGCATGGCTATTACCCAAA 59.364 43.478 2.46 0.00 35.67 3.28
1409 1501 4.713814 TGATGCATGGCTATTACCCAAAAA 59.286 37.500 2.46 0.00 35.67 1.94
1411 1503 3.119316 TGCATGGCTATTACCCAAAAACG 60.119 43.478 0.00 0.00 35.67 3.60
1413 1505 2.797786 TGGCTATTACCCAAAAACGCT 58.202 42.857 0.00 0.00 0.00 5.07
1414 1506 2.750712 TGGCTATTACCCAAAAACGCTC 59.249 45.455 0.00 0.00 0.00 5.03
1415 1507 3.014623 GGCTATTACCCAAAAACGCTCT 58.985 45.455 0.00 0.00 0.00 4.09
1416 1508 3.442625 GGCTATTACCCAAAAACGCTCTT 59.557 43.478 0.00 0.00 0.00 2.85
1417 1509 4.637091 GGCTATTACCCAAAAACGCTCTTA 59.363 41.667 0.00 0.00 0.00 2.10
1418 1510 5.298527 GGCTATTACCCAAAAACGCTCTTAT 59.701 40.000 0.00 0.00 0.00 1.73
1419 1511 6.484308 GGCTATTACCCAAAAACGCTCTTATA 59.516 38.462 0.00 0.00 0.00 0.98
1420 1512 7.174426 GGCTATTACCCAAAAACGCTCTTATAT 59.826 37.037 0.00 0.00 0.00 0.86
1421 1513 8.565416 GCTATTACCCAAAAACGCTCTTATATT 58.435 33.333 0.00 0.00 0.00 1.28
1425 1517 7.272037 ACCCAAAAACGCTCTTATATTATGG 57.728 36.000 0.00 0.00 0.00 2.74
1426 1518 6.264518 ACCCAAAAACGCTCTTATATTATGGG 59.735 38.462 0.00 0.00 46.33 4.00
1427 1519 6.488683 CCCAAAAACGCTCTTATATTATGGGA 59.511 38.462 0.00 0.00 44.24 4.37
1428 1520 7.360361 CCAAAAACGCTCTTATATTATGGGAC 58.640 38.462 0.00 0.00 0.00 4.46
1429 1521 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1430 1522 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1431 1523 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1432 1524 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1433 1525 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1434 1526 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1435 1527 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1436 1528 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1437 1529 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1438 1530 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1439 1531 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
1440 1532 1.526315 TATGGGACGGAGGGAGTAGA 58.474 55.000 0.00 0.00 0.00 2.59
1441 1533 0.861155 ATGGGACGGAGGGAGTAGAT 59.139 55.000 0.00 0.00 0.00 1.98
1442 1534 0.635009 TGGGACGGAGGGAGTAGATT 59.365 55.000 0.00 0.00 0.00 2.40
1443 1535 1.854939 TGGGACGGAGGGAGTAGATTA 59.145 52.381 0.00 0.00 0.00 1.75
1472 1564 1.726791 CGTTGTAGCTCATGTGGTGTC 59.273 52.381 9.62 3.94 0.00 3.67
1482 1574 5.048504 AGCTCATGTGGTGTCACTTTTATTG 60.049 40.000 2.35 0.00 43.94 1.90
1511 1610 2.159393 TGATTATGAAGCGCCTGTTTGC 60.159 45.455 2.29 0.00 0.00 3.68
1573 1676 2.158900 GCTATGCAGCTAGGGTTTGAGA 60.159 50.000 0.00 0.00 44.93 3.27
1623 1726 2.505819 ACCGCCATGATTAGAGGTCTTT 59.494 45.455 0.00 0.00 0.00 2.52
1628 1731 4.153117 GCCATGATTAGAGGTCTTTATGCG 59.847 45.833 0.00 0.00 0.00 4.73
1629 1732 5.541845 CCATGATTAGAGGTCTTTATGCGA 58.458 41.667 0.00 0.00 0.00 5.10
1645 1748 0.307760 GCGATATCTTTTGTGGCCCG 59.692 55.000 0.00 0.00 0.00 6.13
1650 1753 1.474330 ATCTTTTGTGGCCCGGAATC 58.526 50.000 0.73 0.00 0.00 2.52
1651 1754 0.111446 TCTTTTGTGGCCCGGAATCA 59.889 50.000 0.73 0.00 0.00 2.57
1742 2613 5.761205 TCATTAAGCTTGGGTAATAAGGCA 58.239 37.500 9.86 0.00 0.00 4.75
1744 2615 7.522542 TCATTAAGCTTGGGTAATAAGGCATA 58.477 34.615 9.86 0.00 0.00 3.14
1842 2713 9.103582 TCCAGTTAGACTTTGTACCCTTATAAA 57.896 33.333 0.00 0.00 0.00 1.40
1888 2759 6.348458 CGAGGACTTCATTTGCAATCAGTTAA 60.348 38.462 0.00 0.00 0.00 2.01
1946 2840 5.562635 ACGTCATAAATGGTGAAGGGTTTA 58.437 37.500 0.00 0.00 30.77 2.01
1995 2889 5.705905 ACCAGAATACTGTTCCTGCTAAAAC 59.294 40.000 0.00 0.00 42.05 2.43
2013 2907 8.342634 TGCTAAAACAAAAGTATCAAGTCTCAC 58.657 33.333 0.00 0.00 0.00 3.51
2019 2913 8.379457 ACAAAAGTATCAAGTCTCACCTTTAC 57.621 34.615 0.00 0.00 0.00 2.01
2020 2914 7.990886 ACAAAAGTATCAAGTCTCACCTTTACA 59.009 33.333 0.00 0.00 0.00 2.41
2021 2915 7.964604 AAAGTATCAAGTCTCACCTTTACAC 57.035 36.000 0.00 0.00 0.00 2.90
2062 2956 9.886132 TCTTTCTTACATGTTTATCCTTCCTAC 57.114 33.333 2.30 0.00 0.00 3.18
2071 2965 6.969043 TGTTTATCCTTCCTACATGTCCAAT 58.031 36.000 0.00 0.00 0.00 3.16
2072 2966 6.828273 TGTTTATCCTTCCTACATGTCCAATG 59.172 38.462 0.00 0.00 0.00 2.82
2075 2969 5.353394 TCCTTCCTACATGTCCAATGTAC 57.647 43.478 0.00 0.00 33.76 2.90
2091 2985 8.936864 GTCCAATGTACATGATTTAGGCTATAC 58.063 37.037 9.63 0.00 0.00 1.47
2169 3083 6.674419 ACTTCTCATAAGGTAGGAAGATTGGT 59.326 38.462 0.00 0.00 37.43 3.67
2170 3084 7.182930 ACTTCTCATAAGGTAGGAAGATTGGTT 59.817 37.037 0.00 0.00 37.43 3.67
2171 3085 8.618240 TTCTCATAAGGTAGGAAGATTGGTTA 57.382 34.615 0.00 0.00 0.00 2.85
2172 3086 8.251383 TCTCATAAGGTAGGAAGATTGGTTAG 57.749 38.462 0.00 0.00 0.00 2.34
2173 3087 7.290248 TCTCATAAGGTAGGAAGATTGGTTAGG 59.710 40.741 0.00 0.00 0.00 2.69
2174 3088 7.136885 TCATAAGGTAGGAAGATTGGTTAGGA 58.863 38.462 0.00 0.00 0.00 2.94
2175 3089 5.695424 AAGGTAGGAAGATTGGTTAGGAC 57.305 43.478 0.00 0.00 0.00 3.85
2176 3090 4.961585 AGGTAGGAAGATTGGTTAGGACT 58.038 43.478 0.00 0.00 0.00 3.85
2190 3104 4.142425 GGTTAGGACTTAGGAAGAGACGTG 60.142 50.000 0.00 0.00 0.00 4.49
2193 3107 2.561858 GGACTTAGGAAGAGACGTGGTT 59.438 50.000 0.00 0.00 0.00 3.67
2199 3113 1.676014 GGAAGAGACGTGGTTGGGATG 60.676 57.143 0.00 0.00 0.00 3.51
2204 3118 1.762957 AGACGTGGTTGGGATGGATAG 59.237 52.381 0.00 0.00 0.00 2.08
2206 3120 2.368875 GACGTGGTTGGGATGGATAGAT 59.631 50.000 0.00 0.00 0.00 1.98
2214 3128 6.174049 GGTTGGGATGGATAGATAAGTTAGC 58.826 44.000 0.00 0.00 0.00 3.09
2217 3131 6.084738 TGGGATGGATAGATAAGTTAGCTGT 58.915 40.000 10.93 3.89 0.00 4.40
2242 3156 3.388350 AGGGATAGCAACTAGCCAACTAC 59.612 47.826 10.78 0.00 43.55 2.73
2243 3157 3.388350 GGGATAGCAACTAGCCAACTACT 59.612 47.826 10.78 0.00 43.55 2.57
2244 3158 4.501743 GGGATAGCAACTAGCCAACTACTC 60.502 50.000 10.78 0.00 43.55 2.59
2245 3159 7.474983 GGGATAGCAACTAGCCAACTACTCC 62.475 52.000 10.78 0.00 43.55 3.85
2246 3160 2.025589 GCAACTAGCCAACTACTCCC 57.974 55.000 0.00 0.00 37.23 4.30
2247 3161 1.555533 GCAACTAGCCAACTACTCCCT 59.444 52.381 0.00 0.00 37.23 4.20
2248 3162 2.418884 GCAACTAGCCAACTACTCCCTC 60.419 54.545 0.00 0.00 37.23 4.30
2249 3163 2.162264 ACTAGCCAACTACTCCCTCC 57.838 55.000 0.00 0.00 0.00 4.30
2250 3164 1.033574 CTAGCCAACTACTCCCTCCG 58.966 60.000 0.00 0.00 0.00 4.63
2251 3165 0.333993 TAGCCAACTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
2252 3166 0.544595 AGCCAACTACTCCCTCCGTT 60.545 55.000 0.00 0.00 0.00 4.44
2253 3167 0.108281 GCCAACTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
2254 3168 0.172803 CCAACTACTCCCTCCGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
2255 3169 0.172803 CAACTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
2256 3170 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2257 3171 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2258 3172 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
2259 3173 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2260 3174 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2261 3175 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2262 3176 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2263 3177 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2264 3178 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2265 3179 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2266 3180 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2267 3181 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
2268 3182 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
2269 3183 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
2270 3184 3.122948 CCGTTCGGAATTACTTGTCACAG 59.877 47.826 5.19 0.00 0.00 3.66
2271 3185 3.985279 CGTTCGGAATTACTTGTCACAGA 59.015 43.478 0.00 0.00 0.00 3.41
2272 3186 4.446385 CGTTCGGAATTACTTGTCACAGAA 59.554 41.667 0.00 0.00 0.00 3.02
2273 3187 5.050634 CGTTCGGAATTACTTGTCACAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
2274 3188 6.347402 CGTTCGGAATTACTTGTCACAGAAAT 60.347 38.462 0.00 0.00 0.00 2.17
2275 3189 6.480524 TCGGAATTACTTGTCACAGAAATG 57.519 37.500 0.00 0.00 0.00 2.32
2276 3190 5.411361 TCGGAATTACTTGTCACAGAAATGG 59.589 40.000 0.00 0.00 0.00 3.16
2277 3191 5.411361 CGGAATTACTTGTCACAGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
2278 3192 6.094048 CGGAATTACTTGTCACAGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
2279 3193 7.253422 GGAATTACTTGTCACAGAAATGGATG 58.747 38.462 0.00 0.00 0.00 3.51
2280 3194 7.094205 GGAATTACTTGTCACAGAAATGGATGT 60.094 37.037 0.00 0.00 0.00 3.06
2281 3195 8.862325 AATTACTTGTCACAGAAATGGATGTA 57.138 30.769 0.00 0.00 0.00 2.29
2282 3196 9.466497 AATTACTTGTCACAGAAATGGATGTAT 57.534 29.630 0.00 0.00 0.00 2.29
2283 3197 8.862325 TTACTTGTCACAGAAATGGATGTATT 57.138 30.769 0.00 0.00 0.00 1.89
2284 3198 7.765695 ACTTGTCACAGAAATGGATGTATTT 57.234 32.000 0.00 0.00 33.19 1.40
2285 3199 8.862325 ACTTGTCACAGAAATGGATGTATTTA 57.138 30.769 0.00 0.00 30.78 1.40
2286 3200 8.950210 ACTTGTCACAGAAATGGATGTATTTAG 58.050 33.333 0.00 0.00 30.78 1.85
2287 3201 9.166173 CTTGTCACAGAAATGGATGTATTTAGA 57.834 33.333 0.00 0.00 30.78 2.10
2288 3202 9.685276 TTGTCACAGAAATGGATGTATTTAGAT 57.315 29.630 0.00 0.00 30.78 1.98
2289 3203 9.112725 TGTCACAGAAATGGATGTATTTAGATG 57.887 33.333 0.00 0.00 30.78 2.90
2290 3204 9.113838 GTCACAGAAATGGATGTATTTAGATGT 57.886 33.333 0.00 0.00 30.78 3.06
2318 3232 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
2319 3233 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
2320 3234 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
2321 3235 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
2322 3236 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
2323 3237 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
2324 3238 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2325 3239 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2326 3240 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2327 3241 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2328 3242 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
2329 3243 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
2330 3244 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
2331 3245 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
2332 3246 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
2333 3247 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2334 3248 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2335 3249 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2336 3250 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2337 3251 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2338 3252 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2339 3253 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2340 3254 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2341 3255 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2342 3256 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2343 3257 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2344 3258 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2345 3259 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2346 3260 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2347 3261 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
2348 3262 0.682209 TTCCGAACGGAGGGAGTAGG 60.682 60.000 15.34 0.00 46.06 3.18
2419 3333 8.554835 TCTCTCATATAGACATTCTAAGTCGG 57.445 38.462 0.00 0.00 40.84 4.79
2426 3340 5.979288 AGACATTCTAAGTCGGTTACACT 57.021 39.130 0.00 0.00 40.84 3.55
2448 3362 3.876914 TGAACAGCAAGTCCAGTTTGTAG 59.123 43.478 0.00 0.00 0.00 2.74
2498 3413 6.723298 AAGTCAACAACATAATTTGACCCA 57.277 33.333 9.49 0.00 46.88 4.51
2512 3427 2.408565 TGACCCAAAGACAAGGACTCT 58.591 47.619 0.00 0.00 0.00 3.24
2519 3434 5.770162 CCCAAAGACAAGGACTCTTAATTGT 59.230 40.000 0.00 0.00 38.53 2.71
2520 3435 6.940298 CCCAAAGACAAGGACTCTTAATTGTA 59.060 38.462 0.00 0.00 36.08 2.41
2543 3458 8.195436 TGTATACAAACTCTAGCATAGTTGGAC 58.805 37.037 2.20 0.00 40.38 4.02
2662 3595 7.727331 AGAAATCTTAGCATAAGATGAGCAC 57.273 36.000 11.70 4.27 37.11 4.40
2670 3603 5.312079 AGCATAAGATGAGCACCTTTATCC 58.688 41.667 0.00 0.00 0.00 2.59
2728 3661 7.436673 GTGAACTAGTGCACCTAGAGAATTATG 59.563 40.741 21.86 2.78 45.21 1.90
2738 3671 7.039882 CACCTAGAGAATTATGTACGTTGGTT 58.960 38.462 0.00 0.00 0.00 3.67
2754 3687 5.989777 ACGTTGGTTATATATCCTTGCAGAC 59.010 40.000 10.53 1.48 0.00 3.51
2758 3691 5.303333 TGGTTATATATCCTTGCAGACGTGA 59.697 40.000 10.53 0.00 0.00 4.35
2759 3692 5.634020 GGTTATATATCCTTGCAGACGTGAC 59.366 44.000 0.00 0.00 0.00 3.67
2777 3713 4.308265 GTGACTGGGAACACTTCTAACTC 58.692 47.826 0.00 0.00 35.60 3.01
2782 3718 3.720002 TGGGAACACTTCTAACTCCCTTT 59.280 43.478 6.97 0.00 45.25 3.11
2783 3719 4.072839 GGGAACACTTCTAACTCCCTTTG 58.927 47.826 0.00 0.00 42.25 2.77
2796 3732 3.522750 ACTCCCTTTGATGCTTCTGATCT 59.477 43.478 0.88 0.00 0.00 2.75
2797 3733 3.878103 CTCCCTTTGATGCTTCTGATCTG 59.122 47.826 0.88 0.00 0.00 2.90
3062 3998 3.859386 GCAACACTGTTGTCAAAGGAAAG 59.141 43.478 20.54 0.00 33.55 2.62
3068 4004 5.973565 CACTGTTGTCAAAGGAAAGAACATC 59.026 40.000 0.00 0.00 0.00 3.06
3110 4046 6.122277 TGATGTAAAATCACTTCCTGGGATC 58.878 40.000 0.00 0.00 37.95 3.36
3119 4055 4.018141 TCACTTCCTGGGATCACAATTGAT 60.018 41.667 13.59 0.00 45.78 2.57
3411 4347 3.142174 GTGAAGCTAACACTTGAGCCTT 58.858 45.455 14.19 0.00 39.65 4.35
3434 4370 0.252479 CTGGAGGTGAGCAGAGCATT 59.748 55.000 0.00 0.00 0.00 3.56
3446 4382 2.683867 GCAGAGCATTCTTGAAGCAGAT 59.316 45.455 0.00 0.00 0.00 2.90
3482 4418 2.339769 GCTGGAAGGACCCCATATACT 58.660 52.381 0.00 0.00 38.00 2.12
3575 4511 3.072915 TCATGACCAATGTGAGTGGAGTT 59.927 43.478 0.00 0.00 39.62 3.01
3623 4559 1.375013 CATGCTTGCCCACAAAGCC 60.375 57.895 5.76 0.00 34.74 4.35
3647 4583 0.112995 AGGATGGTGTGGCATGTGTT 59.887 50.000 0.00 0.00 0.00 3.32
3656 4592 1.537202 GTGGCATGTGTTGAGTTCCTC 59.463 52.381 0.00 0.00 0.00 3.71
3677 4613 0.951040 CTGGCAAGGAAGGTCACGTC 60.951 60.000 0.00 0.00 0.00 4.34
3686 4622 2.477525 GGAAGGTCACGTCGACTATGAC 60.478 54.545 28.45 28.45 44.70 3.06
4299 5238 6.248569 GGAACCTGGTATATTGGAGAAGAA 57.751 41.667 0.00 0.00 0.00 2.52
4302 5241 7.067129 GGAACCTGGTATATTGGAGAAGAAAAC 59.933 40.741 0.00 0.00 0.00 2.43
4355 5331 2.987413 TTTTTCATGCCTGTACGCAG 57.013 45.000 1.95 0.00 43.26 5.18
4366 5342 4.037446 TGCCTGTACGCAGAAAAGAAAAAT 59.963 37.500 0.00 0.00 45.28 1.82
4368 5344 5.462068 GCCTGTACGCAGAAAAGAAAAATTT 59.538 36.000 0.00 0.00 45.28 1.82
4369 5345 6.345803 GCCTGTACGCAGAAAAGAAAAATTTC 60.346 38.462 0.00 0.00 45.28 2.17
4378 5356 4.356405 AAAGAAAAATTTCTGGCCCAGG 57.644 40.909 11.68 0.00 46.22 4.45
4386 5364 0.401738 TTCTGGCCCAGGAAGAACAG 59.598 55.000 11.68 0.00 31.51 3.16
4400 5378 1.283321 AGAACAGAAGGAAGGCCCATC 59.717 52.381 0.00 0.00 37.41 3.51
4419 5398 7.309194 GGCCCATCTTTATACACATATTTGTCC 60.309 40.741 0.00 0.00 32.34 4.02
4420 5399 7.230510 GCCCATCTTTATACACATATTTGTCCA 59.769 37.037 0.00 0.00 32.34 4.02
4435 5414 9.345517 CATATTTGTCCATTTTGTGTACTTCAG 57.654 33.333 0.00 0.00 0.00 3.02
4510 5513 1.594862 CTAGCTAATTGCCTGCACGTC 59.405 52.381 0.00 0.00 44.23 4.34
4516 5519 1.296056 ATTGCCTGCACGTCGTAACC 61.296 55.000 0.00 0.00 0.00 2.85
4517 5520 2.356553 GCCTGCACGTCGTAACCA 60.357 61.111 0.00 0.00 0.00 3.67
4564 5567 6.038161 TCAAAATACCAATTATGAGTGGCTCG 59.962 38.462 3.56 0.00 44.77 5.03
4609 5636 0.605319 TCCTTCCCACATCGTGTTGC 60.605 55.000 0.00 0.00 0.00 4.17
4640 5667 5.889853 TGAAGATGATGAAAAGGGAATGAGG 59.110 40.000 0.00 0.00 0.00 3.86
4649 5676 5.957774 TGAAAAGGGAATGAGGGATTTTAGG 59.042 40.000 0.00 0.00 0.00 2.69
4661 5688 2.175715 GGATTTTAGGAGGAGCCCACAT 59.824 50.000 0.00 0.00 37.37 3.21
4666 5693 4.706842 TTAGGAGGAGCCCACATAAATC 57.293 45.455 0.00 0.00 37.37 2.17
4679 5706 8.179487 AGCCCACATAAATCATATTTTCCCTAT 58.821 33.333 0.00 0.00 0.00 2.57
4840 5868 3.026694 GTTTGATAGCCTGCATTCCCTT 58.973 45.455 0.00 0.00 0.00 3.95
4852 5880 7.625280 AGCCTGCATTCCCTTATCTATTATCTA 59.375 37.037 0.00 0.00 0.00 1.98
4881 5909 3.365565 CCATTTTTCGACGTTTGGTAGGG 60.366 47.826 0.00 0.00 0.00 3.53
4886 5914 1.269448 TCGACGTTTGGTAGGGTGTAC 59.731 52.381 0.00 0.00 0.00 2.90
4887 5915 1.270550 CGACGTTTGGTAGGGTGTACT 59.729 52.381 0.00 0.00 0.00 2.73
4888 5916 2.669391 CGACGTTTGGTAGGGTGTACTC 60.669 54.545 0.00 0.00 0.00 2.59
4889 5917 2.560105 GACGTTTGGTAGGGTGTACTCT 59.440 50.000 0.00 0.00 0.00 3.24
4890 5918 2.560105 ACGTTTGGTAGGGTGTACTCTC 59.440 50.000 0.00 0.00 0.00 3.20
4891 5919 2.824341 CGTTTGGTAGGGTGTACTCTCT 59.176 50.000 2.37 2.37 0.00 3.10
4892 5920 3.119566 CGTTTGGTAGGGTGTACTCTCTC 60.120 52.174 0.00 0.00 0.00 3.20
4893 5921 2.822707 TGGTAGGGTGTACTCTCTCC 57.177 55.000 0.00 3.85 0.00 3.71
4894 5922 1.064906 TGGTAGGGTGTACTCTCTCCG 60.065 57.143 0.00 0.00 0.00 4.63
4895 5923 1.064832 GGTAGGGTGTACTCTCTCCGT 60.065 57.143 0.00 0.00 0.00 4.69
4896 5924 2.171448 GGTAGGGTGTACTCTCTCCGTA 59.829 54.545 0.00 0.00 0.00 4.02
4897 5925 2.416680 AGGGTGTACTCTCTCCGTAC 57.583 55.000 0.00 0.00 38.13 3.67
4898 5926 1.064832 AGGGTGTACTCTCTCCGTACC 60.065 57.143 0.00 0.00 37.11 3.34
4899 5927 1.012841 GGTGTACTCTCTCCGTACCG 58.987 60.000 0.00 0.00 37.11 4.02
4900 5928 1.406069 GGTGTACTCTCTCCGTACCGA 60.406 57.143 0.00 0.00 37.11 4.69
4901 5929 2.350522 GTGTACTCTCTCCGTACCGAA 58.649 52.381 0.00 0.00 37.11 4.30
4902 5930 2.744202 GTGTACTCTCTCCGTACCGAAA 59.256 50.000 0.00 0.00 37.11 3.46
4903 5931 3.376546 GTGTACTCTCTCCGTACCGAAAT 59.623 47.826 0.00 0.00 37.11 2.17
4904 5932 4.572389 GTGTACTCTCTCCGTACCGAAATA 59.428 45.833 0.00 0.00 37.11 1.40
4905 5933 4.572389 TGTACTCTCTCCGTACCGAAATAC 59.428 45.833 0.00 0.00 37.11 1.89
4906 5934 3.883669 ACTCTCTCCGTACCGAAATACT 58.116 45.455 0.00 0.00 0.00 2.12
4907 5935 4.268359 ACTCTCTCCGTACCGAAATACTT 58.732 43.478 0.00 0.00 0.00 2.24
4908 5936 5.431765 ACTCTCTCCGTACCGAAATACTTA 58.568 41.667 0.00 0.00 0.00 2.24
4909 5937 6.060788 ACTCTCTCCGTACCGAAATACTTAT 58.939 40.000 0.00 0.00 0.00 1.73
4910 5938 7.220030 ACTCTCTCCGTACCGAAATACTTATA 58.780 38.462 0.00 0.00 0.00 0.98
4911 5939 7.387397 ACTCTCTCCGTACCGAAATACTTATAG 59.613 40.741 0.00 0.00 0.00 1.31
4912 5940 7.220030 TCTCTCCGTACCGAAATACTTATAGT 58.780 38.462 0.00 0.00 0.00 2.12
4913 5941 7.716998 TCTCTCCGTACCGAAATACTTATAGTT 59.283 37.037 0.00 0.00 0.00 2.24
4914 5942 7.642669 TCTCCGTACCGAAATACTTATAGTTG 58.357 38.462 0.00 0.00 0.00 3.16
4915 5943 6.738114 TCCGTACCGAAATACTTATAGTTGG 58.262 40.000 0.00 0.00 0.00 3.77
4916 5944 5.922544 CCGTACCGAAATACTTATAGTTGGG 59.077 44.000 0.00 0.00 39.40 4.12
4917 5945 5.922544 CGTACCGAAATACTTATAGTTGGGG 59.077 44.000 1.61 0.00 38.24 4.96
4918 5946 5.300411 ACCGAAATACTTATAGTTGGGGG 57.700 43.478 1.61 0.00 38.24 5.40
4919 5947 4.970640 ACCGAAATACTTATAGTTGGGGGA 59.029 41.667 1.61 0.00 38.24 4.81
4920 5948 5.429435 ACCGAAATACTTATAGTTGGGGGAA 59.571 40.000 1.61 0.00 38.24 3.97
4921 5949 6.069498 ACCGAAATACTTATAGTTGGGGGAAA 60.069 38.462 1.61 0.00 38.24 3.13
4922 5950 6.261603 CCGAAATACTTATAGTTGGGGGAAAC 59.738 42.308 0.00 0.00 32.41 2.78
4923 5951 7.052248 CGAAATACTTATAGTTGGGGGAAACT 58.948 38.462 0.00 0.00 42.89 2.66
4924 5952 8.206189 CGAAATACTTATAGTTGGGGGAAACTA 58.794 37.037 0.00 0.00 44.52 2.24
4925 5953 9.557061 GAAATACTTATAGTTGGGGGAAACTAG 57.443 37.037 3.49 0.00 43.86 2.57
4926 5954 8.865244 AATACTTATAGTTGGGGGAAACTAGA 57.135 34.615 0.00 0.00 43.86 2.43
4927 5955 6.809976 ACTTATAGTTGGGGGAAACTAGAG 57.190 41.667 0.00 6.06 43.86 2.43
4928 5956 6.269974 ACTTATAGTTGGGGGAAACTAGAGT 58.730 40.000 0.00 6.54 43.86 3.24
4929 5957 7.425003 ACTTATAGTTGGGGGAAACTAGAGTA 58.575 38.462 0.00 0.00 43.86 2.59
4930 5958 7.564292 ACTTATAGTTGGGGGAAACTAGAGTAG 59.436 40.741 0.00 3.20 43.86 2.57
4931 5959 2.838813 AGTTGGGGGAAACTAGAGTAGC 59.161 50.000 0.00 0.00 38.62 3.58
4932 5960 1.481871 TGGGGGAAACTAGAGTAGCG 58.518 55.000 0.00 0.00 0.00 4.26
4933 5961 0.104487 GGGGGAAACTAGAGTAGCGC 59.896 60.000 0.00 0.00 0.00 5.92
4934 5962 0.822164 GGGGAAACTAGAGTAGCGCA 59.178 55.000 11.47 0.00 0.00 6.09
4935 5963 1.413077 GGGGAAACTAGAGTAGCGCAT 59.587 52.381 11.47 0.00 0.00 4.73
4936 5964 2.158943 GGGGAAACTAGAGTAGCGCATT 60.159 50.000 11.47 0.00 0.00 3.56
4937 5965 3.532542 GGGAAACTAGAGTAGCGCATTT 58.467 45.455 11.47 0.00 0.00 2.32
4938 5966 3.939592 GGGAAACTAGAGTAGCGCATTTT 59.060 43.478 11.47 0.00 0.00 1.82
4939 5967 4.201822 GGGAAACTAGAGTAGCGCATTTTG 60.202 45.833 11.47 0.00 0.00 2.44
4940 5968 4.201822 GGAAACTAGAGTAGCGCATTTTGG 60.202 45.833 11.47 0.00 0.00 3.28
4941 5969 3.887621 ACTAGAGTAGCGCATTTTGGA 57.112 42.857 11.47 0.00 0.00 3.53
4942 5970 3.786635 ACTAGAGTAGCGCATTTTGGAG 58.213 45.455 11.47 0.44 0.00 3.86
4943 5971 3.447586 ACTAGAGTAGCGCATTTTGGAGA 59.552 43.478 11.47 0.00 0.00 3.71
4944 5972 2.622436 AGAGTAGCGCATTTTGGAGAC 58.378 47.619 11.47 0.00 0.00 3.36
4945 5973 1.666189 GAGTAGCGCATTTTGGAGACC 59.334 52.381 11.47 0.00 0.00 3.85
4946 5974 0.373716 GTAGCGCATTTTGGAGACCG 59.626 55.000 11.47 0.00 0.00 4.79
4947 5975 0.248012 TAGCGCATTTTGGAGACCGA 59.752 50.000 11.47 0.00 0.00 4.69
4948 5976 1.021390 AGCGCATTTTGGAGACCGAG 61.021 55.000 11.47 0.00 0.00 4.63
4949 5977 1.425428 CGCATTTTGGAGACCGAGC 59.575 57.895 0.00 0.00 0.00 5.03
4950 5978 1.021390 CGCATTTTGGAGACCGAGCT 61.021 55.000 0.00 0.00 0.00 4.09
4951 5979 0.729690 GCATTTTGGAGACCGAGCTC 59.270 55.000 2.73 2.73 0.00 4.09
4959 5987 1.646189 GAGACCGAGCTCCATGAAAC 58.354 55.000 8.47 0.00 0.00 2.78
4960 5988 0.250513 AGACCGAGCTCCATGAAACC 59.749 55.000 8.47 0.00 0.00 3.27
4961 5989 0.250513 GACCGAGCTCCATGAAACCT 59.749 55.000 8.47 0.00 0.00 3.50
4962 5990 0.693049 ACCGAGCTCCATGAAACCTT 59.307 50.000 8.47 0.00 0.00 3.50
4963 5991 1.073923 ACCGAGCTCCATGAAACCTTT 59.926 47.619 8.47 0.00 0.00 3.11
4964 5992 2.162681 CCGAGCTCCATGAAACCTTTT 58.837 47.619 8.47 0.00 0.00 2.27
4965 5993 3.244770 ACCGAGCTCCATGAAACCTTTTA 60.245 43.478 8.47 0.00 0.00 1.52
4966 5994 3.947834 CCGAGCTCCATGAAACCTTTTAT 59.052 43.478 8.47 0.00 0.00 1.40
4967 5995 4.399303 CCGAGCTCCATGAAACCTTTTATT 59.601 41.667 8.47 0.00 0.00 1.40
4968 5996 5.105756 CCGAGCTCCATGAAACCTTTTATTT 60.106 40.000 8.47 0.00 0.00 1.40
4969 5997 6.389906 CGAGCTCCATGAAACCTTTTATTTT 58.610 36.000 8.47 0.00 0.00 1.82
4970 5998 6.308766 CGAGCTCCATGAAACCTTTTATTTTG 59.691 38.462 8.47 0.00 0.00 2.44
4971 5999 7.301868 AGCTCCATGAAACCTTTTATTTTGA 57.698 32.000 0.00 0.00 0.00 2.69
4972 6000 7.734942 AGCTCCATGAAACCTTTTATTTTGAA 58.265 30.769 0.00 0.00 0.00 2.69
4973 6001 8.210265 AGCTCCATGAAACCTTTTATTTTGAAA 58.790 29.630 0.00 0.00 0.00 2.69
4974 6002 8.835439 GCTCCATGAAACCTTTTATTTTGAAAA 58.165 29.630 0.00 0.00 0.00 2.29
5033 6061 9.729023 TCCGAAAATTTTTATACATGTATGCAG 57.271 29.630 25.48 7.20 0.00 4.41
5034 6062 8.967218 CCGAAAATTTTTATACATGTATGCAGG 58.033 33.333 25.48 11.35 0.00 4.85
5035 6063 8.967218 CGAAAATTTTTATACATGTATGCAGGG 58.033 33.333 25.48 3.86 0.00 4.45
5038 6066 9.985730 AAATTTTTATACATGTATGCAGGGATG 57.014 29.630 25.48 0.00 31.65 3.51
5039 6067 8.710749 ATTTTTATACATGTATGCAGGGATGT 57.289 30.769 25.48 10.93 31.65 3.06
5040 6068 9.806448 ATTTTTATACATGTATGCAGGGATGTA 57.194 29.630 25.48 13.76 36.12 2.29
5041 6069 9.634021 TTTTTATACATGTATGCAGGGATGTAA 57.366 29.630 25.48 7.33 35.49 2.41
5042 6070 9.634021 TTTTATACATGTATGCAGGGATGTAAA 57.366 29.630 25.48 12.32 35.49 2.01
5043 6071 8.846943 TTATACATGTATGCAGGGATGTAAAG 57.153 34.615 25.48 0.00 35.49 1.85
5044 6072 5.116084 ACATGTATGCAGGGATGTAAAGT 57.884 39.130 0.00 0.00 0.00 2.66
5045 6073 4.883585 ACATGTATGCAGGGATGTAAAGTG 59.116 41.667 0.00 0.00 0.00 3.16
5046 6074 4.568072 TGTATGCAGGGATGTAAAGTGT 57.432 40.909 0.00 0.00 0.00 3.55
5047 6075 5.685520 TGTATGCAGGGATGTAAAGTGTA 57.314 39.130 0.00 0.00 0.00 2.90
5048 6076 6.247229 TGTATGCAGGGATGTAAAGTGTAT 57.753 37.500 0.00 0.00 0.00 2.29
5049 6077 6.054941 TGTATGCAGGGATGTAAAGTGTATG 58.945 40.000 0.00 0.00 0.00 2.39
5050 6078 4.568072 TGCAGGGATGTAAAGTGTATGT 57.432 40.909 0.00 0.00 0.00 2.29
5051 6079 4.260985 TGCAGGGATGTAAAGTGTATGTG 58.739 43.478 0.00 0.00 0.00 3.21
5052 6080 4.261801 GCAGGGATGTAAAGTGTATGTGT 58.738 43.478 0.00 0.00 0.00 3.72
5053 6081 4.700213 GCAGGGATGTAAAGTGTATGTGTT 59.300 41.667 0.00 0.00 0.00 3.32
5054 6082 5.878116 GCAGGGATGTAAAGTGTATGTGTTA 59.122 40.000 0.00 0.00 0.00 2.41
5055 6083 6.373216 GCAGGGATGTAAAGTGTATGTGTTAA 59.627 38.462 0.00 0.00 0.00 2.01
5056 6084 7.094549 GCAGGGATGTAAAGTGTATGTGTTAAA 60.095 37.037 0.00 0.00 0.00 1.52
5057 6085 8.788806 CAGGGATGTAAAGTGTATGTGTTAAAA 58.211 33.333 0.00 0.00 0.00 1.52
5058 6086 9.357161 AGGGATGTAAAGTGTATGTGTTAAAAA 57.643 29.630 0.00 0.00 0.00 1.94
5083 6111 6.995511 TTCAGGATAAAATACCTTGAACCG 57.004 37.500 0.00 0.00 33.91 4.44
5084 6112 4.879545 TCAGGATAAAATACCTTGAACCGC 59.120 41.667 0.00 0.00 33.91 5.68
5085 6113 3.875134 AGGATAAAATACCTTGAACCGCG 59.125 43.478 0.00 0.00 31.95 6.46
5086 6114 3.872771 GGATAAAATACCTTGAACCGCGA 59.127 43.478 8.23 0.00 0.00 5.87
5087 6115 4.025145 GGATAAAATACCTTGAACCGCGAG 60.025 45.833 8.23 0.00 0.00 5.03
5088 6116 1.084289 AAATACCTTGAACCGCGAGC 58.916 50.000 8.23 0.00 0.00 5.03
5089 6117 0.249398 AATACCTTGAACCGCGAGCT 59.751 50.000 8.23 0.00 0.00 4.09
5090 6118 0.460284 ATACCTTGAACCGCGAGCTG 60.460 55.000 8.23 0.00 0.00 4.24
5091 6119 3.793144 CCTTGAACCGCGAGCTGC 61.793 66.667 8.23 0.00 41.47 5.25
5092 6120 3.043713 CTTGAACCGCGAGCTGCA 61.044 61.111 8.23 0.00 46.97 4.41
5093 6121 3.300667 CTTGAACCGCGAGCTGCAC 62.301 63.158 8.23 0.00 46.97 4.57
5094 6122 4.600576 TGAACCGCGAGCTGCACA 62.601 61.111 8.23 0.00 46.97 4.57
5095 6123 3.345808 GAACCGCGAGCTGCACAA 61.346 61.111 8.23 0.00 46.97 3.33
5096 6124 2.892334 GAACCGCGAGCTGCACAAA 61.892 57.895 8.23 0.00 46.97 2.83
5097 6125 2.387125 GAACCGCGAGCTGCACAAAA 62.387 55.000 8.23 0.00 46.97 2.44
5098 6126 1.999071 AACCGCGAGCTGCACAAAAA 61.999 50.000 8.23 0.00 46.97 1.94
5127 6155 9.362151 ACAAATCAGGGACTTTAAAGATAAACA 57.638 29.630 21.92 2.13 34.60 2.83
5128 6156 9.846248 CAAATCAGGGACTTTAAAGATAAACAG 57.154 33.333 21.92 5.57 34.60 3.16
5129 6157 9.588096 AAATCAGGGACTTTAAAGATAAACAGT 57.412 29.630 21.92 0.00 34.60 3.55
5131 6159 9.668497 ATCAGGGACTTTAAAGATAAACAGTAC 57.332 33.333 21.92 0.00 34.60 2.73
5132 6160 8.653191 TCAGGGACTTTAAAGATAAACAGTACA 58.347 33.333 21.92 0.00 34.60 2.90
5133 6161 9.449719 CAGGGACTTTAAAGATAAACAGTACAT 57.550 33.333 21.92 0.00 34.60 2.29
5151 6179 9.502091 ACAGTACATATGCTAAAAAGTTTCAGA 57.498 29.630 1.58 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 8.074370 GGTAAACACAAGGAGAAGTTTATGAAC 58.926 37.037 0.00 0.00 38.32 3.18
100 101 6.008331 GGGGTAAACACAAGGAGAAGTTTAT 58.992 40.000 0.00 0.00 38.32 1.40
110 115 2.883026 TCCAATGGGGTAAACACAAGG 58.117 47.619 0.00 0.00 38.11 3.61
111 116 4.946478 TTTCCAATGGGGTAAACACAAG 57.054 40.909 0.00 0.00 38.11 3.16
113 118 5.151454 AGATTTTCCAATGGGGTAAACACA 58.849 37.500 0.00 0.00 38.54 3.72
114 119 5.480422 AGAGATTTTCCAATGGGGTAAACAC 59.520 40.000 0.00 0.00 38.54 3.32
116 121 6.210584 TCAAGAGATTTTCCAATGGGGTAAAC 59.789 38.462 0.00 0.00 38.54 2.01
117 122 6.318913 TCAAGAGATTTTCCAATGGGGTAAA 58.681 36.000 0.00 0.00 39.81 2.01
118 123 5.898120 TCAAGAGATTTTCCAATGGGGTAA 58.102 37.500 0.00 0.00 38.11 2.85
119 124 5.528600 TCAAGAGATTTTCCAATGGGGTA 57.471 39.130 0.00 0.00 38.11 3.69
120 125 4.402616 TCAAGAGATTTTCCAATGGGGT 57.597 40.909 0.00 0.00 38.11 4.95
121 126 5.422970 TCAATCAAGAGATTTTCCAATGGGG 59.577 40.000 0.00 0.00 42.46 4.96
129 134 7.217825 GCAAACGAGATCAATCAAGAGATTTTC 59.782 37.037 0.00 0.00 42.46 2.29
130 135 7.025963 GCAAACGAGATCAATCAAGAGATTTT 58.974 34.615 0.00 0.00 42.46 1.82
187 192 2.237143 TCGCTGGATCCATATTCCCATC 59.763 50.000 16.63 0.00 31.87 3.51
207 212 3.664107 TGCTGACCACTGTCTTTGTATC 58.336 45.455 0.00 0.00 42.28 2.24
262 267 3.447229 TGTAATCAGAGTCGCATCCTTCA 59.553 43.478 0.00 0.00 0.00 3.02
284 289 1.626686 CTCTGATAGTGGGCGAGGAT 58.373 55.000 0.00 0.00 0.00 3.24
380 385 3.365265 CAGCCCCTTGTTGACGCC 61.365 66.667 0.00 0.00 0.00 5.68
387 392 2.203538 CCTTGCACAGCCCCTTGT 60.204 61.111 0.00 0.00 0.00 3.16
396 401 3.610040 AATCTATCACGTCCTTGCACA 57.390 42.857 0.00 0.00 0.00 4.57
419 424 5.986004 ACAACAACAACAAGACTAGCTAC 57.014 39.130 0.00 0.00 0.00 3.58
423 428 6.378582 ACAACAACAACAACAACAAGACTAG 58.621 36.000 0.00 0.00 0.00 2.57
428 433 5.649602 ACAACAACAACAACAACAACAAG 57.350 34.783 0.00 0.00 0.00 3.16
497 508 3.018149 GTTACACACAAACTTCCCACCA 58.982 45.455 0.00 0.00 0.00 4.17
537 548 3.435327 TGATCGGAACAAAAGAACGATGG 59.565 43.478 2.40 0.00 38.30 3.51
593 607 9.888878 GTATCATTTGAGAACAACATCCATATG 57.111 33.333 0.00 0.00 39.17 1.78
657 676 3.876914 TCATCGCTGGGAACAAACATATC 59.123 43.478 0.00 0.00 42.06 1.63
739 758 0.665835 TTCAACAGCGGCATTTTCGT 59.334 45.000 1.45 0.00 0.00 3.85
776 796 6.463049 CCACTTCTCTTTCAGAACCACTAGAA 60.463 42.308 0.00 0.00 36.08 2.10
777 797 5.011125 CCACTTCTCTTTCAGAACCACTAGA 59.989 44.000 0.00 0.00 36.08 2.43
778 798 5.233988 CCACTTCTCTTTCAGAACCACTAG 58.766 45.833 0.00 0.00 36.08 2.57
800 835 7.492344 CACAAGTCAATTTATTTTGCTATCCCC 59.508 37.037 0.00 0.00 0.00 4.81
865 900 2.867624 TCCTGCAAAGGATGGATATGC 58.132 47.619 0.00 0.00 37.52 3.14
923 958 4.296593 TTGCCGCCGTACGTTGGA 62.297 61.111 22.77 6.62 41.42 3.53
936 971 1.864565 GGGAATGTGTTTGTGTTGCC 58.135 50.000 0.00 0.00 0.00 4.52
940 975 0.753479 TGGCGGGAATGTGTTTGTGT 60.753 50.000 0.00 0.00 0.00 3.72
941 976 0.318614 GTGGCGGGAATGTGTTTGTG 60.319 55.000 0.00 0.00 0.00 3.33
942 977 1.791103 CGTGGCGGGAATGTGTTTGT 61.791 55.000 0.00 0.00 0.00 2.83
943 978 1.081509 CGTGGCGGGAATGTGTTTG 60.082 57.895 0.00 0.00 0.00 2.93
944 979 0.250381 TACGTGGCGGGAATGTGTTT 60.250 50.000 0.00 0.00 0.00 2.83
945 980 0.952010 GTACGTGGCGGGAATGTGTT 60.952 55.000 0.00 0.00 0.00 3.32
970 1011 0.255033 ATTTGTTCTCTACCGGGCCC 59.745 55.000 13.57 13.57 0.00 5.80
996 1037 0.598680 GAGGATGGGAAGCGTCGATG 60.599 60.000 0.00 0.00 0.00 3.84
1013 1068 1.133407 CCTTTCTTCGACGGGAGAGAG 59.867 57.143 10.61 10.61 0.00 3.20
1014 1069 1.174783 CCTTTCTTCGACGGGAGAGA 58.825 55.000 0.00 0.00 0.00 3.10
1021 1076 2.731976 CCTCTGTTTCCTTTCTTCGACG 59.268 50.000 0.00 0.00 0.00 5.12
1291 1360 1.077212 CACCTTGGAGGGGATGCAG 60.077 63.158 0.00 0.00 43.10 4.41
1334 1423 3.496131 CACGGCGAATGAACGGGG 61.496 66.667 16.62 0.00 0.00 5.73
1348 1437 1.472276 GCGTCACCTCTTATCGCACG 61.472 60.000 0.00 0.00 45.01 5.34
1356 1445 1.745320 AACACTCGGCGTCACCTCTT 61.745 55.000 6.85 0.00 35.61 2.85
1357 1446 1.745320 AAACACTCGGCGTCACCTCT 61.745 55.000 6.85 0.00 35.61 3.69
1402 1494 6.488683 TCCCATAATATAAGAGCGTTTTTGGG 59.511 38.462 0.00 0.00 0.00 4.12
1403 1495 7.360361 GTCCCATAATATAAGAGCGTTTTTGG 58.640 38.462 0.00 0.00 0.00 3.28
1404 1496 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
1406 1498 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1407 1499 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1409 1501 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1411 1503 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1413 1505 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1414 1506 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1415 1507 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1416 1508 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1417 1509 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1418 1510 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
1419 1511 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
1420 1512 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
1421 1513 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
1422 1514 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
1423 1515 0.635009 AATCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
1424 1516 2.671896 TAATCTACTCCCTCCGTCCC 57.328 55.000 0.00 0.00 0.00 4.46
1425 1517 3.896272 ACAATAATCTACTCCCTCCGTCC 59.104 47.826 0.00 0.00 0.00 4.79
1426 1518 4.320348 CGACAATAATCTACTCCCTCCGTC 60.320 50.000 0.00 0.00 0.00 4.79
1427 1519 3.568853 CGACAATAATCTACTCCCTCCGT 59.431 47.826 0.00 0.00 0.00 4.69
1428 1520 3.568853 ACGACAATAATCTACTCCCTCCG 59.431 47.826 0.00 0.00 0.00 4.63
1429 1521 5.530712 GAACGACAATAATCTACTCCCTCC 58.469 45.833 0.00 0.00 0.00 4.30
1430 1522 5.213675 CGAACGACAATAATCTACTCCCTC 58.786 45.833 0.00 0.00 0.00 4.30
1431 1523 4.643784 ACGAACGACAATAATCTACTCCCT 59.356 41.667 0.14 0.00 0.00 4.20
1432 1524 4.929781 ACGAACGACAATAATCTACTCCC 58.070 43.478 0.14 0.00 0.00 4.30
1433 1525 5.803967 ACAACGAACGACAATAATCTACTCC 59.196 40.000 0.14 0.00 0.00 3.85
1434 1526 6.866179 ACAACGAACGACAATAATCTACTC 57.134 37.500 0.14 0.00 0.00 2.59
1435 1527 6.471519 GCTACAACGAACGACAATAATCTACT 59.528 38.462 0.14 0.00 0.00 2.57
1436 1528 6.471519 AGCTACAACGAACGACAATAATCTAC 59.528 38.462 0.14 0.00 0.00 2.59
1437 1529 6.558009 AGCTACAACGAACGACAATAATCTA 58.442 36.000 0.14 0.00 0.00 1.98
1438 1530 5.408356 AGCTACAACGAACGACAATAATCT 58.592 37.500 0.14 0.00 0.00 2.40
1439 1531 5.287752 TGAGCTACAACGAACGACAATAATC 59.712 40.000 0.14 0.00 0.00 1.75
1440 1532 5.165676 TGAGCTACAACGAACGACAATAAT 58.834 37.500 0.14 0.00 0.00 1.28
1441 1533 4.548494 TGAGCTACAACGAACGACAATAA 58.452 39.130 0.14 0.00 0.00 1.40
1442 1534 4.163458 TGAGCTACAACGAACGACAATA 57.837 40.909 0.14 0.00 0.00 1.90
1443 1535 3.021269 TGAGCTACAACGAACGACAAT 57.979 42.857 0.14 0.00 0.00 2.71
1482 1574 4.214971 AGGCGCTTCATAATCACATCAATC 59.785 41.667 7.64 0.00 0.00 2.67
1511 1610 2.306341 AGACCAGAGTTGATGCATCG 57.694 50.000 21.34 7.97 0.00 3.84
1573 1676 5.196695 GCAAAAGACCTCTAATCAAGGGAT 58.803 41.667 0.00 0.00 38.29 3.85
1623 1726 3.146066 GGGCCACAAAAGATATCGCATA 58.854 45.455 4.39 0.00 0.00 3.14
1628 1731 2.341846 TCCGGGCCACAAAAGATATC 57.658 50.000 4.39 0.00 0.00 1.63
1629 1732 2.818751 TTCCGGGCCACAAAAGATAT 57.181 45.000 4.39 0.00 0.00 1.63
1645 1748 8.742554 ACTGAATTTGACGTAATTTTGATTCC 57.257 30.769 0.00 0.00 0.00 3.01
1700 1803 2.690497 TGAAAACCAACCAAATCTCGCA 59.310 40.909 0.00 0.00 0.00 5.10
1744 2615 8.584157 TGCTCACAAGTTGGAATAACAAATATT 58.416 29.630 7.96 0.00 36.91 1.28
1808 2679 8.410912 GGTACAAAGTCTAACTGGAACAAAAAT 58.589 33.333 0.00 0.00 38.70 1.82
1842 2713 6.203808 TCGCAAGTGTACTGTATACAGAAT 57.796 37.500 34.16 18.36 42.16 2.40
1849 2720 3.090037 AGTCCTCGCAAGTGTACTGTAT 58.910 45.455 0.00 0.00 39.48 2.29
1850 2721 2.511659 AGTCCTCGCAAGTGTACTGTA 58.488 47.619 0.00 0.00 39.48 2.74
1851 2722 1.329256 AGTCCTCGCAAGTGTACTGT 58.671 50.000 0.00 0.00 39.48 3.55
1852 2723 2.288213 TGAAGTCCTCGCAAGTGTACTG 60.288 50.000 0.00 0.00 39.48 2.74
1853 2724 1.961394 TGAAGTCCTCGCAAGTGTACT 59.039 47.619 0.00 0.00 39.48 2.73
1854 2725 2.433868 TGAAGTCCTCGCAAGTGTAC 57.566 50.000 0.00 0.00 39.48 2.90
1946 2840 2.168313 CTGTTTGGGGAAAAACTGCAGT 59.832 45.455 15.25 15.25 40.11 4.40
1995 2889 8.283291 GTGTAAAGGTGAGACTTGATACTTTTG 58.717 37.037 0.00 0.00 0.00 2.44
2013 2907 2.060326 TTCGCTCTCACGTGTAAAGG 57.940 50.000 16.51 3.99 0.00 3.11
2019 2913 1.702886 AGATGTTTCGCTCTCACGTG 58.297 50.000 9.94 9.94 0.00 4.49
2020 2914 2.440539 AAGATGTTTCGCTCTCACGT 57.559 45.000 0.00 0.00 0.00 4.49
2021 2915 2.989840 AGAAAGATGTTTCGCTCTCACG 59.010 45.455 9.47 0.00 45.90 4.35
2065 2959 7.986085 ATAGCCTAAATCATGTACATTGGAC 57.014 36.000 5.37 0.00 0.00 4.02
2067 2961 8.846943 TGTATAGCCTAAATCATGTACATTGG 57.153 34.615 5.37 0.00 0.00 3.16
2075 2969 9.224267 AGCTTGTATTGTATAGCCTAAATCATG 57.776 33.333 0.00 0.00 34.19 3.07
2091 2985 9.813080 GAACAAGAGTAAGTTTAGCTTGTATTG 57.187 33.333 14.97 0.00 45.84 1.90
2169 3083 4.015084 CCACGTCTCTTCCTAAGTCCTAA 58.985 47.826 0.00 0.00 0.00 2.69
2170 3084 3.009916 ACCACGTCTCTTCCTAAGTCCTA 59.990 47.826 0.00 0.00 0.00 2.94
2171 3085 2.225066 ACCACGTCTCTTCCTAAGTCCT 60.225 50.000 0.00 0.00 0.00 3.85
2172 3086 2.169330 ACCACGTCTCTTCCTAAGTCC 58.831 52.381 0.00 0.00 0.00 3.85
2173 3087 3.576648 CAACCACGTCTCTTCCTAAGTC 58.423 50.000 0.00 0.00 0.00 3.01
2174 3088 2.299297 CCAACCACGTCTCTTCCTAAGT 59.701 50.000 0.00 0.00 0.00 2.24
2175 3089 2.353803 CCCAACCACGTCTCTTCCTAAG 60.354 54.545 0.00 0.00 0.00 2.18
2176 3090 1.621814 CCCAACCACGTCTCTTCCTAA 59.378 52.381 0.00 0.00 0.00 2.69
2190 3104 6.013293 AGCTAACTTATCTATCCATCCCAACC 60.013 42.308 0.00 0.00 0.00 3.77
2193 3107 6.014242 CACAGCTAACTTATCTATCCATCCCA 60.014 42.308 0.00 0.00 0.00 4.37
2199 3113 6.720288 TCCCTACACAGCTAACTTATCTATCC 59.280 42.308 0.00 0.00 0.00 2.59
2204 3118 6.015350 TGCTATCCCTACACAGCTAACTTATC 60.015 42.308 0.00 0.00 35.05 1.75
2206 3120 5.205821 TGCTATCCCTACACAGCTAACTTA 58.794 41.667 0.00 0.00 35.05 2.24
2214 3128 3.243907 GGCTAGTTGCTATCCCTACACAG 60.244 52.174 0.00 0.00 42.39 3.66
2217 3131 3.040655 TGGCTAGTTGCTATCCCTACA 57.959 47.619 0.00 0.00 42.39 2.74
2242 3156 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2243 3157 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2244 3158 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2245 3159 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2246 3160 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
2247 3161 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
2248 3162 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
2249 3163 3.985279 TCTGTGACAAGTAATTCCGAACG 59.015 43.478 0.00 0.00 0.00 3.95
2250 3164 5.917541 TTCTGTGACAAGTAATTCCGAAC 57.082 39.130 0.00 0.00 0.00 3.95
2251 3165 6.072728 CCATTTCTGTGACAAGTAATTCCGAA 60.073 38.462 0.00 0.00 0.00 4.30
2252 3166 5.411361 CCATTTCTGTGACAAGTAATTCCGA 59.589 40.000 0.00 0.00 0.00 4.55
2253 3167 5.411361 TCCATTTCTGTGACAAGTAATTCCG 59.589 40.000 0.00 0.00 0.00 4.30
2254 3168 6.817765 TCCATTTCTGTGACAAGTAATTCC 57.182 37.500 0.00 0.00 0.00 3.01
2255 3169 7.820648 ACATCCATTTCTGTGACAAGTAATTC 58.179 34.615 0.00 0.00 0.00 2.17
2256 3170 7.765695 ACATCCATTTCTGTGACAAGTAATT 57.234 32.000 0.00 0.00 0.00 1.40
2257 3171 9.466497 AATACATCCATTTCTGTGACAAGTAAT 57.534 29.630 0.00 0.00 0.00 1.89
2258 3172 8.862325 AATACATCCATTTCTGTGACAAGTAA 57.138 30.769 0.00 0.00 0.00 2.24
2259 3173 8.862325 AAATACATCCATTTCTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
2260 3174 7.765695 AAATACATCCATTTCTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
2261 3175 9.166173 TCTAAATACATCCATTTCTGTGACAAG 57.834 33.333 0.00 0.00 30.84 3.16
2262 3176 9.685276 ATCTAAATACATCCATTTCTGTGACAA 57.315 29.630 0.00 0.00 30.84 3.18
2263 3177 9.112725 CATCTAAATACATCCATTTCTGTGACA 57.887 33.333 0.00 0.00 30.84 3.58
2264 3178 9.113838 ACATCTAAATACATCCATTTCTGTGAC 57.886 33.333 0.00 0.00 30.84 3.67
2292 3206 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
2293 3207 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
2294 3208 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
2295 3209 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
2296 3210 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
2297 3211 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
2298 3212 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
2299 3213 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
2300 3214 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
2301 3215 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
2302 3216 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
2303 3217 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
2304 3218 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
2305 3219 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
2306 3220 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
2307 3221 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
2308 3222 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
2309 3223 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
2310 3224 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2311 3225 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
2312 3226 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
2313 3227 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
2314 3228 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
2315 3229 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
2316 3230 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
2317 3231 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2318 3232 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2319 3233 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2320 3234 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2321 3235 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2322 3236 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2323 3237 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2324 3238 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2325 3239 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2326 3240 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2327 3241 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2328 3242 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
2329 3243 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
2330 3244 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
2331 3245 1.077212 TCCTACTCCCTCCGTTCGG 60.077 63.158 4.74 4.74 0.00 4.30
2332 3246 1.102222 CCTCCTACTCCCTCCGTTCG 61.102 65.000 0.00 0.00 0.00 3.95
2333 3247 0.756070 CCCTCCTACTCCCTCCGTTC 60.756 65.000 0.00 0.00 0.00 3.95
2334 3248 1.219824 TCCCTCCTACTCCCTCCGTT 61.220 60.000 0.00 0.00 0.00 4.44
2335 3249 1.219824 TTCCCTCCTACTCCCTCCGT 61.220 60.000 0.00 0.00 0.00 4.69
2336 3250 0.032416 TTTCCCTCCTACTCCCTCCG 60.032 60.000 0.00 0.00 0.00 4.63
2337 3251 1.291335 TCTTTCCCTCCTACTCCCTCC 59.709 57.143 0.00 0.00 0.00 4.30
2338 3252 2.023791 ACTCTTTCCCTCCTACTCCCTC 60.024 54.545 0.00 0.00 0.00 4.30
2339 3253 2.012236 ACTCTTTCCCTCCTACTCCCT 58.988 52.381 0.00 0.00 0.00 4.20
2340 3254 2.553911 ACTCTTTCCCTCCTACTCCC 57.446 55.000 0.00 0.00 0.00 4.30
2341 3255 3.442076 TGAACTCTTTCCCTCCTACTCC 58.558 50.000 0.00 0.00 0.00 3.85
2342 3256 5.685520 AATGAACTCTTTCCCTCCTACTC 57.314 43.478 0.00 0.00 0.00 2.59
2343 3257 5.045505 GGAAATGAACTCTTTCCCTCCTACT 60.046 44.000 3.89 0.00 43.85 2.57
2344 3258 5.186942 GGAAATGAACTCTTTCCCTCCTAC 58.813 45.833 3.89 0.00 43.85 3.18
2345 3259 5.437191 GGAAATGAACTCTTTCCCTCCTA 57.563 43.478 3.89 0.00 43.85 2.94
2346 3260 4.308526 GGAAATGAACTCTTTCCCTCCT 57.691 45.455 3.89 0.00 43.85 3.69
2396 3310 8.693120 AACCGACTTAGAATGTCTATATGAGA 57.307 34.615 0.00 0.00 32.70 3.27
2398 3312 9.346005 TGTAACCGACTTAGAATGTCTATATGA 57.654 33.333 0.00 0.00 32.70 2.15
2408 3322 6.092955 TGTTCAGTGTAACCGACTTAGAAT 57.907 37.500 0.00 0.00 37.80 2.40
2419 3333 3.202906 TGGACTTGCTGTTCAGTGTAAC 58.797 45.455 1.78 0.00 29.21 2.50
2426 3340 2.722094 ACAAACTGGACTTGCTGTTCA 58.278 42.857 0.00 0.00 32.30 3.18
2448 3362 3.142174 GTTAGGATATGGTTCCAGCTGC 58.858 50.000 8.66 0.00 38.32 5.25
2519 3434 8.195436 GTGTCCAACTATGCTAGAGTTTGTATA 58.805 37.037 0.00 0.00 34.90 1.47
2520 3435 7.042335 GTGTCCAACTATGCTAGAGTTTGTAT 58.958 38.462 0.00 0.00 34.90 2.29
2543 3458 6.455360 AATATCCAACCTTGCATTAGTGTG 57.545 37.500 0.00 0.00 0.00 3.82
2577 3500 6.150140 GCCTGAAAGAAAGATGTTGTAGACAT 59.850 38.462 0.00 0.00 44.84 3.06
2578 3501 5.470098 GCCTGAAAGAAAGATGTTGTAGACA 59.530 40.000 0.00 0.00 38.59 3.41
2597 3520 4.940483 AGCTATACAGATGATAGGCCTGA 58.060 43.478 17.99 0.00 0.00 3.86
2637 3564 7.875041 GGTGCTCATCTTATGCTAAGATTTCTA 59.125 37.037 12.82 2.83 34.96 2.10
2638 3565 6.709846 GGTGCTCATCTTATGCTAAGATTTCT 59.290 38.462 12.82 0.00 34.96 2.52
2639 3566 6.709846 AGGTGCTCATCTTATGCTAAGATTTC 59.290 38.462 12.82 7.91 34.96 2.17
2640 3567 6.599445 AGGTGCTCATCTTATGCTAAGATTT 58.401 36.000 12.82 0.00 34.96 2.17
2641 3568 6.185114 AGGTGCTCATCTTATGCTAAGATT 57.815 37.500 12.82 0.00 34.96 2.40
2659 3592 4.879545 TGTTTAGATTCCGGATAAAGGTGC 59.120 41.667 4.15 0.00 0.00 5.01
2662 3595 8.220755 TCAAATGTTTAGATTCCGGATAAAGG 57.779 34.615 4.15 0.00 0.00 3.11
2708 3641 6.544931 ACGTACATAATTCTCTAGGTGCACTA 59.455 38.462 17.98 6.34 0.00 2.74
2728 3661 7.115947 GTCTGCAAGGATATATAACCAACGTAC 59.884 40.741 11.30 0.00 0.00 3.67
2738 3671 5.048013 CCAGTCACGTCTGCAAGGATATATA 60.048 44.000 0.00 0.00 34.47 0.86
2754 3687 3.057734 GTTAGAAGTGTTCCCAGTCACG 58.942 50.000 0.00 0.00 39.25 4.35
2758 3691 2.638363 GGGAGTTAGAAGTGTTCCCAGT 59.362 50.000 3.05 0.00 45.55 4.00
2759 3692 3.336138 GGGAGTTAGAAGTGTTCCCAG 57.664 52.381 3.05 0.00 45.55 4.45
2777 3713 2.358267 GCAGATCAGAAGCATCAAAGGG 59.642 50.000 0.00 0.00 0.00 3.95
2782 3718 1.134189 CCTGGCAGATCAGAAGCATCA 60.134 52.381 17.94 0.00 36.93 3.07
2783 3719 1.595466 CCTGGCAGATCAGAAGCATC 58.405 55.000 17.94 0.00 36.93 3.91
2796 3732 2.595463 GTGCAACAGAGCCTGGCA 60.595 61.111 22.65 0.00 35.51 4.92
2797 3733 2.282040 AGTGCAACAGAGCCTGGC 60.282 61.111 11.65 11.65 41.43 4.85
3017 3953 3.193267 CACCATCAACCAAATCAACCGAT 59.807 43.478 0.00 0.00 0.00 4.18
3062 3998 3.018856 TCCAGTGGCAATGATGATGTTC 58.981 45.455 17.68 0.00 0.00 3.18
3068 4004 2.927028 TCAGATCCAGTGGCAATGATG 58.073 47.619 17.68 9.44 0.00 3.07
3110 4046 8.041829 AGACAATCTTCTTCTCATCAATTGTG 57.958 34.615 5.13 3.68 36.35 3.33
3411 4347 1.228988 TCTGCTCACCTCCAGCTGA 60.229 57.895 17.39 0.00 41.13 4.26
3434 4370 4.096532 ACGAGAACGATATCTGCTTCAAGA 59.903 41.667 0.34 0.00 42.66 3.02
3446 4382 1.671328 CCAGCAGAGACGAGAACGATA 59.329 52.381 0.00 0.00 42.66 2.92
3575 4511 2.027073 GGCATCGCCGATCGCATAA 61.027 57.895 10.32 0.00 39.62 1.90
3623 4559 0.107508 ATGCCACACCATCCTCTTCG 60.108 55.000 0.00 0.00 0.00 3.79
3656 4592 2.032528 TGACCTTCCTTGCCAGCG 59.967 61.111 0.00 0.00 0.00 5.18
3677 4613 1.645034 CAGGCACCAAGTCATAGTCG 58.355 55.000 0.00 0.00 0.00 4.18
3686 4622 1.898574 GACCACACCAGGCACCAAG 60.899 63.158 0.00 0.00 0.00 3.61
3731 4667 1.984570 CTGCTCCTCCGTCTTCCCA 60.985 63.158 0.00 0.00 0.00 4.37
3821 4757 1.375140 CATCCCCTCGGCATCATCG 60.375 63.158 0.00 0.00 0.00 3.84
4355 5331 4.756642 CCTGGGCCAGAAATTTTTCTTTTC 59.243 41.667 34.84 0.00 44.70 2.29
4366 5342 0.850100 TGTTCTTCCTGGGCCAGAAA 59.150 50.000 34.84 21.25 32.44 2.52
4368 5344 0.473694 TCTGTTCTTCCTGGGCCAGA 60.474 55.000 34.84 17.66 32.44 3.86
4369 5345 0.401738 TTCTGTTCTTCCTGGGCCAG 59.598 55.000 27.04 27.04 0.00 4.85
4378 5356 1.073923 TGGGCCTTCCTTCTGTTCTTC 59.926 52.381 4.53 0.00 36.20 2.87
4386 5364 4.822350 GTGTATAAAGATGGGCCTTCCTTC 59.178 45.833 15.28 0.00 39.32 3.46
4419 5398 9.912634 ATTTTCATACCTGAAGTACACAAAATG 57.087 29.630 0.00 0.42 42.19 2.32
4420 5399 9.912634 CATTTTCATACCTGAAGTACACAAAAT 57.087 29.630 0.00 0.00 42.19 1.82
4435 5414 6.449635 TCCAGCAACATACATTTTCATACC 57.550 37.500 0.00 0.00 0.00 2.73
4496 5499 0.515564 GTTACGACGTGCAGGCAATT 59.484 50.000 11.56 0.00 0.00 2.32
4510 5513 7.272515 CACTAAAATATGTTTGCCTTGGTTACG 59.727 37.037 0.00 0.00 0.00 3.18
4516 5519 8.984891 TGAATCACTAAAATATGTTTGCCTTG 57.015 30.769 0.00 0.00 0.00 3.61
4517 5520 9.995003 TTTGAATCACTAAAATATGTTTGCCTT 57.005 25.926 0.00 0.00 0.00 4.35
4564 5567 4.859629 AAAAACTCACAACGTCTCTGTC 57.140 40.909 0.00 0.00 0.00 3.51
4588 5591 2.436417 CAACACGATGTGGGAAGGAAT 58.564 47.619 1.64 0.00 37.94 3.01
4590 5593 0.605319 GCAACACGATGTGGGAAGGA 60.605 55.000 1.64 0.00 37.94 3.36
4591 5594 0.888736 TGCAACACGATGTGGGAAGG 60.889 55.000 1.64 0.00 37.94 3.46
4592 5595 0.518636 CTGCAACACGATGTGGGAAG 59.481 55.000 1.64 0.00 37.94 3.46
4593 5596 0.107643 TCTGCAACACGATGTGGGAA 59.892 50.000 1.64 0.00 37.94 3.97
4597 5600 2.223845 TCACATTCTGCAACACGATGTG 59.776 45.455 15.65 15.65 39.20 3.21
4598 5601 2.493035 TCACATTCTGCAACACGATGT 58.507 42.857 0.00 0.00 0.00 3.06
4609 5636 6.376299 TCCCTTTTCATCATCTTCACATTCTG 59.624 38.462 0.00 0.00 0.00 3.02
4640 5667 1.564348 TGTGGGCTCCTCCTAAAATCC 59.436 52.381 0.00 0.00 34.39 3.01
4649 5676 7.309438 GGAAAATATGATTTATGTGGGCTCCTC 60.309 40.741 0.00 0.00 0.00 3.71
4762 5790 1.696832 GCGCTGTCAAACGAGGATCC 61.697 60.000 2.48 2.48 0.00 3.36
4852 5880 5.275494 CAAACGTCGAAAAATGGGTTAAGT 58.725 37.500 0.00 0.00 0.00 2.24
4862 5890 2.613133 CACCCTACCAAACGTCGAAAAA 59.387 45.455 0.00 0.00 0.00 1.94
4868 5896 2.560105 AGAGTACACCCTACCAAACGTC 59.440 50.000 0.00 0.00 0.00 4.34
4869 5897 2.560105 GAGAGTACACCCTACCAAACGT 59.440 50.000 0.00 0.00 0.00 3.99
4870 5898 2.824341 AGAGAGTACACCCTACCAAACG 59.176 50.000 0.00 0.00 0.00 3.60
4894 5922 6.041979 TCCCCCAACTATAAGTATTTCGGTAC 59.958 42.308 0.00 0.00 0.00 3.34
4895 5923 6.142498 TCCCCCAACTATAAGTATTTCGGTA 58.858 40.000 0.00 0.00 0.00 4.02
4896 5924 4.970640 TCCCCCAACTATAAGTATTTCGGT 59.029 41.667 0.00 0.00 0.00 4.69
4897 5925 5.556006 TCCCCCAACTATAAGTATTTCGG 57.444 43.478 0.00 0.00 0.00 4.30
4898 5926 7.052248 AGTTTCCCCCAACTATAAGTATTTCG 58.948 38.462 0.00 0.00 35.10 3.46
4899 5927 9.557061 CTAGTTTCCCCCAACTATAAGTATTTC 57.443 37.037 0.00 0.00 38.34 2.17
4900 5928 9.287818 TCTAGTTTCCCCCAACTATAAGTATTT 57.712 33.333 0.00 0.00 38.34 1.40
4901 5929 8.865244 TCTAGTTTCCCCCAACTATAAGTATT 57.135 34.615 0.00 0.00 38.34 1.89
4902 5930 8.072480 ACTCTAGTTTCCCCCAACTATAAGTAT 58.928 37.037 6.86 0.00 38.34 2.12
4903 5931 7.425003 ACTCTAGTTTCCCCCAACTATAAGTA 58.575 38.462 6.86 0.00 38.34 2.24
4904 5932 6.269974 ACTCTAGTTTCCCCCAACTATAAGT 58.730 40.000 0.00 0.00 38.34 2.24
4905 5933 6.809976 ACTCTAGTTTCCCCCAACTATAAG 57.190 41.667 0.00 0.00 38.34 1.73
4906 5934 6.325804 GCTACTCTAGTTTCCCCCAACTATAA 59.674 42.308 0.00 0.00 38.34 0.98
4907 5935 5.837438 GCTACTCTAGTTTCCCCCAACTATA 59.163 44.000 0.00 0.00 38.34 1.31
4908 5936 4.654724 GCTACTCTAGTTTCCCCCAACTAT 59.345 45.833 0.00 0.00 38.34 2.12
4909 5937 4.028825 GCTACTCTAGTTTCCCCCAACTA 58.971 47.826 0.00 0.00 38.07 2.24
4910 5938 2.838813 GCTACTCTAGTTTCCCCCAACT 59.161 50.000 0.00 0.00 40.28 3.16
4911 5939 2.418334 CGCTACTCTAGTTTCCCCCAAC 60.418 54.545 0.00 0.00 0.00 3.77
4912 5940 1.829222 CGCTACTCTAGTTTCCCCCAA 59.171 52.381 0.00 0.00 0.00 4.12
4913 5941 1.481871 CGCTACTCTAGTTTCCCCCA 58.518 55.000 0.00 0.00 0.00 4.96
4914 5942 0.104487 GCGCTACTCTAGTTTCCCCC 59.896 60.000 0.00 0.00 0.00 5.40
4915 5943 0.822164 TGCGCTACTCTAGTTTCCCC 59.178 55.000 9.73 0.00 0.00 4.81
4916 5944 2.892784 ATGCGCTACTCTAGTTTCCC 57.107 50.000 9.73 0.00 0.00 3.97
4917 5945 4.201822 CCAAAATGCGCTACTCTAGTTTCC 60.202 45.833 9.73 0.00 0.00 3.13
4918 5946 4.630069 TCCAAAATGCGCTACTCTAGTTTC 59.370 41.667 9.73 0.00 0.00 2.78
4919 5947 4.575885 TCCAAAATGCGCTACTCTAGTTT 58.424 39.130 9.73 0.00 0.00 2.66
4920 5948 4.081642 TCTCCAAAATGCGCTACTCTAGTT 60.082 41.667 9.73 0.00 0.00 2.24
4921 5949 3.447586 TCTCCAAAATGCGCTACTCTAGT 59.552 43.478 9.73 0.00 0.00 2.57
4922 5950 3.799420 GTCTCCAAAATGCGCTACTCTAG 59.201 47.826 9.73 0.00 0.00 2.43
4923 5951 3.430374 GGTCTCCAAAATGCGCTACTCTA 60.430 47.826 9.73 0.00 0.00 2.43
4924 5952 2.622436 GTCTCCAAAATGCGCTACTCT 58.378 47.619 9.73 0.00 0.00 3.24
4925 5953 1.666189 GGTCTCCAAAATGCGCTACTC 59.334 52.381 9.73 0.00 0.00 2.59
4926 5954 1.739067 GGTCTCCAAAATGCGCTACT 58.261 50.000 9.73 0.00 0.00 2.57
4927 5955 0.373716 CGGTCTCCAAAATGCGCTAC 59.626 55.000 9.73 0.00 0.00 3.58
4928 5956 0.248012 TCGGTCTCCAAAATGCGCTA 59.752 50.000 9.73 0.00 0.00 4.26
4929 5957 1.003839 TCGGTCTCCAAAATGCGCT 60.004 52.632 9.73 0.00 0.00 5.92
4930 5958 1.425428 CTCGGTCTCCAAAATGCGC 59.575 57.895 0.00 0.00 0.00 6.09
4931 5959 1.021390 AGCTCGGTCTCCAAAATGCG 61.021 55.000 0.00 0.00 0.00 4.73
4932 5960 0.729690 GAGCTCGGTCTCCAAAATGC 59.270 55.000 0.00 0.00 0.00 3.56
4940 5968 1.646189 GTTTCATGGAGCTCGGTCTC 58.354 55.000 7.83 0.00 0.00 3.36
4941 5969 0.250513 GGTTTCATGGAGCTCGGTCT 59.749 55.000 7.83 0.00 0.00 3.85
4942 5970 0.250513 AGGTTTCATGGAGCTCGGTC 59.749 55.000 7.83 0.00 0.00 4.79
4943 5971 0.693049 AAGGTTTCATGGAGCTCGGT 59.307 50.000 7.83 0.00 0.00 4.69
4944 5972 1.826385 AAAGGTTTCATGGAGCTCGG 58.174 50.000 7.83 0.00 0.00 4.63
4945 5973 5.567138 AATAAAAGGTTTCATGGAGCTCG 57.433 39.130 7.83 0.00 0.00 5.03
4946 5974 7.378181 TCAAAATAAAAGGTTTCATGGAGCTC 58.622 34.615 4.71 4.71 0.00 4.09
4947 5975 7.301868 TCAAAATAAAAGGTTTCATGGAGCT 57.698 32.000 0.00 0.00 0.00 4.09
4948 5976 7.961325 TTCAAAATAAAAGGTTTCATGGAGC 57.039 32.000 0.00 0.00 0.00 4.70
5007 6035 9.729023 CTGCATACATGTATAAAAATTTTCGGA 57.271 29.630 17.86 2.80 0.00 4.55
5008 6036 8.967218 CCTGCATACATGTATAAAAATTTTCGG 58.033 33.333 17.86 2.96 0.00 4.30
5009 6037 8.967218 CCCTGCATACATGTATAAAAATTTTCG 58.033 33.333 17.86 3.44 0.00 3.46
5012 6040 9.985730 CATCCCTGCATACATGTATAAAAATTT 57.014 29.630 17.86 0.00 0.00 1.82
5013 6041 9.146586 ACATCCCTGCATACATGTATAAAAATT 57.853 29.630 17.86 0.00 0.00 1.82
5014 6042 8.710749 ACATCCCTGCATACATGTATAAAAAT 57.289 30.769 17.86 5.22 0.00 1.82
5015 6043 9.634021 TTACATCCCTGCATACATGTATAAAAA 57.366 29.630 17.86 3.87 32.96 1.94
5016 6044 9.634021 TTTACATCCCTGCATACATGTATAAAA 57.366 29.630 17.86 6.16 32.96 1.52
5017 6045 9.283768 CTTTACATCCCTGCATACATGTATAAA 57.716 33.333 17.86 9.73 32.96 1.40
5018 6046 8.436778 ACTTTACATCCCTGCATACATGTATAA 58.563 33.333 17.86 8.82 32.96 0.98
5019 6047 7.877612 CACTTTACATCCCTGCATACATGTATA 59.122 37.037 17.86 3.20 32.96 1.47
5020 6048 6.712095 CACTTTACATCCCTGCATACATGTAT 59.288 38.462 12.75 12.75 32.96 2.29
5021 6049 6.054941 CACTTTACATCCCTGCATACATGTA 58.945 40.000 8.27 8.27 31.83 2.29
5022 6050 4.883585 CACTTTACATCCCTGCATACATGT 59.116 41.667 2.69 2.69 33.95 3.21
5023 6051 4.883585 ACACTTTACATCCCTGCATACATG 59.116 41.667 0.00 0.00 0.00 3.21
5024 6052 5.116084 ACACTTTACATCCCTGCATACAT 57.884 39.130 0.00 0.00 0.00 2.29
5025 6053 4.568072 ACACTTTACATCCCTGCATACA 57.432 40.909 0.00 0.00 0.00 2.29
5026 6054 6.017934 CACATACACTTTACATCCCTGCATAC 60.018 42.308 0.00 0.00 0.00 2.39
5027 6055 6.054941 CACATACACTTTACATCCCTGCATA 58.945 40.000 0.00 0.00 0.00 3.14
5028 6056 4.883585 CACATACACTTTACATCCCTGCAT 59.116 41.667 0.00 0.00 0.00 3.96
5029 6057 4.260985 CACATACACTTTACATCCCTGCA 58.739 43.478 0.00 0.00 0.00 4.41
5030 6058 4.261801 ACACATACACTTTACATCCCTGC 58.738 43.478 0.00 0.00 0.00 4.85
5031 6059 7.915293 TTAACACATACACTTTACATCCCTG 57.085 36.000 0.00 0.00 0.00 4.45
5032 6060 8.927675 TTTTAACACATACACTTTACATCCCT 57.072 30.769 0.00 0.00 0.00 4.20
5057 6085 8.466798 CGGTTCAAGGTATTTTATCCTGAAATT 58.533 33.333 0.00 0.00 33.97 1.82
5058 6086 7.416326 GCGGTTCAAGGTATTTTATCCTGAAAT 60.416 37.037 0.00 0.00 33.97 2.17
5059 6087 6.127842 GCGGTTCAAGGTATTTTATCCTGAAA 60.128 38.462 0.00 0.00 33.97 2.69
5060 6088 5.355910 GCGGTTCAAGGTATTTTATCCTGAA 59.644 40.000 0.00 0.00 33.97 3.02
5061 6089 4.879545 GCGGTTCAAGGTATTTTATCCTGA 59.120 41.667 0.00 0.00 33.97 3.86
5062 6090 4.260620 CGCGGTTCAAGGTATTTTATCCTG 60.261 45.833 0.00 0.00 33.97 3.86
5063 6091 3.875134 CGCGGTTCAAGGTATTTTATCCT 59.125 43.478 0.00 0.00 35.34 3.24
5064 6092 3.872771 TCGCGGTTCAAGGTATTTTATCC 59.127 43.478 6.13 0.00 0.00 2.59
5065 6093 4.552184 GCTCGCGGTTCAAGGTATTTTATC 60.552 45.833 6.13 0.00 0.00 1.75
5066 6094 3.311596 GCTCGCGGTTCAAGGTATTTTAT 59.688 43.478 6.13 0.00 0.00 1.40
5067 6095 2.674357 GCTCGCGGTTCAAGGTATTTTA 59.326 45.455 6.13 0.00 0.00 1.52
5068 6096 1.467342 GCTCGCGGTTCAAGGTATTTT 59.533 47.619 6.13 0.00 0.00 1.82
5069 6097 1.084289 GCTCGCGGTTCAAGGTATTT 58.916 50.000 6.13 0.00 0.00 1.40
5070 6098 0.249398 AGCTCGCGGTTCAAGGTATT 59.751 50.000 6.13 0.00 0.00 1.89
5071 6099 0.460284 CAGCTCGCGGTTCAAGGTAT 60.460 55.000 6.13 0.00 0.00 2.73
5072 6100 1.080093 CAGCTCGCGGTTCAAGGTA 60.080 57.895 6.13 0.00 0.00 3.08
5073 6101 2.357517 CAGCTCGCGGTTCAAGGT 60.358 61.111 6.13 0.00 0.00 3.50
5074 6102 3.793144 GCAGCTCGCGGTTCAAGG 61.793 66.667 6.13 0.00 0.00 3.61
5075 6103 3.043713 TGCAGCTCGCGGTTCAAG 61.044 61.111 6.13 0.00 46.97 3.02
5076 6104 3.345808 GTGCAGCTCGCGGTTCAA 61.346 61.111 6.13 0.00 46.97 2.69
5077 6105 4.600576 TGTGCAGCTCGCGGTTCA 62.601 61.111 6.13 0.00 46.97 3.18
5078 6106 2.387125 TTTTGTGCAGCTCGCGGTTC 62.387 55.000 6.13 0.00 46.97 3.62
5079 6107 1.999071 TTTTTGTGCAGCTCGCGGTT 61.999 50.000 6.13 0.00 46.97 4.44
5080 6108 2.477176 TTTTTGTGCAGCTCGCGGT 61.477 52.632 6.13 0.00 46.97 5.68
5081 6109 2.331098 TTTTTGTGCAGCTCGCGG 59.669 55.556 6.13 0.00 46.97 6.46
5101 6129 9.362151 TGTTTATCTTTAAAGTCCCTGATTTGT 57.638 29.630 14.74 0.00 0.00 2.83
5102 6130 9.846248 CTGTTTATCTTTAAAGTCCCTGATTTG 57.154 33.333 14.74 0.00 0.00 2.32
5103 6131 9.588096 ACTGTTTATCTTTAAAGTCCCTGATTT 57.412 29.630 14.74 0.00 0.00 2.17
5105 6133 9.668497 GTACTGTTTATCTTTAAAGTCCCTGAT 57.332 33.333 14.74 3.24 0.00 2.90
5106 6134 8.653191 TGTACTGTTTATCTTTAAAGTCCCTGA 58.347 33.333 14.74 0.00 0.00 3.86
5107 6135 8.842358 TGTACTGTTTATCTTTAAAGTCCCTG 57.158 34.615 14.74 6.74 0.00 4.45
5125 6153 9.502091 TCTGAAACTTTTTAGCATATGTACTGT 57.498 29.630 4.29 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.