Multiple sequence alignment - TraesCS1A01G065800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G065800 chr1A 100.000 3320 0 0 1 3320 48595183 48591864 0.000000e+00 6131.0
1 TraesCS1A01G065800 chr1B 85.878 3222 207 94 238 3320 68088011 68084899 0.000000e+00 3201.0
2 TraesCS1A01G065800 chr1B 87.500 128 13 1 1854 1981 68086455 68086331 9.600000e-31 145.0
3 TraesCS1A01G065800 chr1D 88.027 1495 94 46 516 1981 48404946 48403508 0.000000e+00 1690.0
4 TraesCS1A01G065800 chr1D 86.772 1580 79 46 1812 3320 48403632 48402112 0.000000e+00 1640.0
5 TraesCS1A01G065800 chr1D 89.691 97 2 6 268 358 48405204 48405110 2.090000e-22 117.0
6 TraesCS1A01G065800 chr7A 95.455 220 9 1 1 220 89919950 89919732 1.900000e-92 350.0
7 TraesCS1A01G065800 chr7A 95.000 220 10 1 1 220 469385173 469384955 8.820000e-91 344.0
8 TraesCS1A01G065800 chr7A 93.665 221 12 2 1 220 574111002 574110783 2.470000e-86 329.0
9 TraesCS1A01G065800 chr2A 95.455 220 9 1 1 220 533471034 533471252 1.900000e-92 350.0
10 TraesCS1A01G065800 chr3A 93.562 233 13 2 1 233 573829085 573828855 2.450000e-91 346.0
11 TraesCS1A01G065800 chr3A 94.037 218 12 1 1 218 608812471 608812255 2.470000e-86 329.0
12 TraesCS1A01G065800 chr6A 95.000 220 10 1 1 220 564672792 564672574 8.820000e-91 344.0
13 TraesCS1A01G065800 chr6A 100.000 29 0 0 2069 2097 578693798 578693770 2.000000e-03 54.7
14 TraesCS1A01G065800 chr4A 94.091 220 13 0 1 220 134543060 134542841 5.310000e-88 335.0
15 TraesCS1A01G065800 chr3D 93.182 220 15 0 1 220 497498017 497498236 1.150000e-84 324.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G065800 chr1A 48591864 48595183 3319 True 6131 6131 100.000000 1 3320 1 chr1A.!!$R1 3319
1 TraesCS1A01G065800 chr1B 68084899 68088011 3112 True 1673 3201 86.689000 238 3320 2 chr1B.!!$R1 3082
2 TraesCS1A01G065800 chr1D 48402112 48405204 3092 True 1149 1690 88.163333 268 3320 3 chr1D.!!$R1 3052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.031585 TGAACTCGGGTCGTGAACTG 59.968 55.0 0.0 0.0 0.0 3.16 F
48 49 0.033366 GGGCTTGGCATTTGAAACGT 59.967 50.0 0.0 0.0 0.0 3.99 F
228 229 0.033504 GTGGAGTTGGCGTGAGAAGA 59.966 55.0 0.0 0.0 0.0 2.87 F
254 255 0.111639 AGGAGAGGATAGGTCGGAGC 59.888 60.0 0.0 0.0 0.0 4.70 F
2048 2247 0.174617 CAGGAAGACGAGGAGAAGCC 59.825 60.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1825 1.023513 GCATGAGGAGCAGAGCGTTT 61.024 55.000 0.0 0.0 0.0 3.60 R
2043 2242 0.095417 GATCTTGTTCGTGCGGCTTC 59.905 55.000 0.0 0.0 0.0 3.86 R
2091 2290 0.179124 GCATCTCTTCCGCTTCGTCT 60.179 55.000 0.0 0.0 0.0 4.18 R
2172 2371 1.141019 GGTAGACATCTTCGCCGCA 59.859 57.895 0.0 0.0 0.0 5.69 R
3090 3405 0.250295 TGCTCCCAAGTCAAACCTCG 60.250 55.000 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.885644 CCGGCGTGATGAACTCGG 60.886 66.667 6.01 0.00 37.08 4.63
18 19 2.885644 CGGCGTGATGAACTCGGG 60.886 66.667 0.00 0.00 36.25 5.14
19 20 2.264794 GGCGTGATGAACTCGGGT 59.735 61.111 0.00 0.00 36.25 5.28
20 21 1.810030 GGCGTGATGAACTCGGGTC 60.810 63.158 0.00 0.00 36.25 4.46
21 22 2.158959 GCGTGATGAACTCGGGTCG 61.159 63.158 0.00 0.00 36.25 4.79
22 23 1.211969 CGTGATGAACTCGGGTCGT 59.788 57.895 0.00 0.00 32.81 4.34
23 24 1.071019 CGTGATGAACTCGGGTCGTG 61.071 60.000 0.00 0.00 32.81 4.35
24 25 0.242825 GTGATGAACTCGGGTCGTGA 59.757 55.000 0.00 0.00 0.00 4.35
25 26 0.963225 TGATGAACTCGGGTCGTGAA 59.037 50.000 0.00 0.00 0.00 3.18
26 27 1.336517 TGATGAACTCGGGTCGTGAAC 60.337 52.381 0.00 0.00 0.00 3.18
27 28 0.966920 ATGAACTCGGGTCGTGAACT 59.033 50.000 0.00 0.00 0.00 3.01
28 29 0.031585 TGAACTCGGGTCGTGAACTG 59.968 55.000 0.00 0.00 0.00 3.16
29 30 0.666577 GAACTCGGGTCGTGAACTGG 60.667 60.000 0.00 0.00 0.00 4.00
30 31 2.095978 AACTCGGGTCGTGAACTGGG 62.096 60.000 0.00 0.00 0.00 4.45
31 32 3.296709 CTCGGGTCGTGAACTGGGG 62.297 68.421 0.00 0.00 0.00 4.96
33 34 3.637273 GGGTCGTGAACTGGGGCT 61.637 66.667 0.00 0.00 0.00 5.19
34 35 2.430367 GGTCGTGAACTGGGGCTT 59.570 61.111 0.00 0.00 0.00 4.35
35 36 1.966451 GGTCGTGAACTGGGGCTTG 60.966 63.158 0.00 0.00 0.00 4.01
36 37 1.966451 GTCGTGAACTGGGGCTTGG 60.966 63.158 0.00 0.00 0.00 3.61
37 38 3.365265 CGTGAACTGGGGCTTGGC 61.365 66.667 0.00 0.00 0.00 4.52
38 39 2.203480 GTGAACTGGGGCTTGGCA 60.203 61.111 0.00 0.00 0.00 4.92
39 40 1.607467 GTGAACTGGGGCTTGGCAT 60.607 57.895 0.00 0.00 0.00 4.40
40 41 1.155859 TGAACTGGGGCTTGGCATT 59.844 52.632 0.00 0.00 0.00 3.56
41 42 0.471591 TGAACTGGGGCTTGGCATTT 60.472 50.000 0.00 0.00 0.00 2.32
42 43 0.037046 GAACTGGGGCTTGGCATTTG 60.037 55.000 0.00 0.00 0.00 2.32
43 44 0.471591 AACTGGGGCTTGGCATTTGA 60.472 50.000 0.00 0.00 0.00 2.69
44 45 0.471591 ACTGGGGCTTGGCATTTGAA 60.472 50.000 0.00 0.00 0.00 2.69
45 46 0.686224 CTGGGGCTTGGCATTTGAAA 59.314 50.000 0.00 0.00 0.00 2.69
46 47 0.396060 TGGGGCTTGGCATTTGAAAC 59.604 50.000 0.00 0.00 0.00 2.78
47 48 0.670239 GGGGCTTGGCATTTGAAACG 60.670 55.000 0.00 0.00 0.00 3.60
48 49 0.033366 GGGCTTGGCATTTGAAACGT 59.967 50.000 0.00 0.00 0.00 3.99
49 50 1.540146 GGGCTTGGCATTTGAAACGTT 60.540 47.619 0.00 0.00 0.00 3.99
50 51 1.792367 GGCTTGGCATTTGAAACGTTC 59.208 47.619 0.00 0.00 0.00 3.95
51 52 1.792367 GCTTGGCATTTGAAACGTTCC 59.208 47.619 0.00 0.00 0.00 3.62
52 53 2.545742 GCTTGGCATTTGAAACGTTCCT 60.546 45.455 0.00 0.00 0.00 3.36
53 54 3.716601 CTTGGCATTTGAAACGTTCCTT 58.283 40.909 0.00 0.00 0.00 3.36
54 55 3.810310 TGGCATTTGAAACGTTCCTTT 57.190 38.095 0.00 0.00 0.00 3.11
55 56 4.130286 TGGCATTTGAAACGTTCCTTTT 57.870 36.364 0.00 0.00 0.00 2.27
56 57 4.508662 TGGCATTTGAAACGTTCCTTTTT 58.491 34.783 0.00 0.00 0.00 1.94
76 77 4.932268 TTTTTAAATAGACGCGGACAGG 57.068 40.909 12.47 0.00 0.00 4.00
77 78 3.872511 TTTAAATAGACGCGGACAGGA 57.127 42.857 12.47 0.00 0.00 3.86
78 79 4.395959 TTTAAATAGACGCGGACAGGAT 57.604 40.909 12.47 0.00 0.00 3.24
79 80 2.225068 AAATAGACGCGGACAGGATG 57.775 50.000 12.47 0.00 46.00 3.51
80 81 1.399714 AATAGACGCGGACAGGATGA 58.600 50.000 12.47 0.00 39.69 2.92
81 82 0.955178 ATAGACGCGGACAGGATGAG 59.045 55.000 12.47 0.00 39.69 2.90
82 83 1.101635 TAGACGCGGACAGGATGAGG 61.102 60.000 12.47 0.00 39.69 3.86
83 84 4.148825 ACGCGGACAGGATGAGGC 62.149 66.667 12.47 0.00 39.69 4.70
84 85 4.147449 CGCGGACAGGATGAGGCA 62.147 66.667 0.00 0.00 39.69 4.75
85 86 2.268920 GCGGACAGGATGAGGCAA 59.731 61.111 0.00 0.00 39.69 4.52
86 87 1.377202 GCGGACAGGATGAGGCAAA 60.377 57.895 0.00 0.00 39.69 3.68
87 88 0.960364 GCGGACAGGATGAGGCAAAA 60.960 55.000 0.00 0.00 39.69 2.44
88 89 1.089920 CGGACAGGATGAGGCAAAAG 58.910 55.000 0.00 0.00 39.69 2.27
89 90 1.467920 GGACAGGATGAGGCAAAAGG 58.532 55.000 0.00 0.00 39.69 3.11
90 91 1.004745 GGACAGGATGAGGCAAAAGGA 59.995 52.381 0.00 0.00 39.69 3.36
91 92 2.357569 GGACAGGATGAGGCAAAAGGAT 60.358 50.000 0.00 0.00 39.69 3.24
92 93 2.686915 GACAGGATGAGGCAAAAGGATG 59.313 50.000 0.00 0.00 39.69 3.51
93 94 2.042162 ACAGGATGAGGCAAAAGGATGT 59.958 45.455 0.00 0.00 39.69 3.06
94 95 2.426024 CAGGATGAGGCAAAAGGATGTG 59.574 50.000 0.00 0.00 39.69 3.21
95 96 1.753073 GGATGAGGCAAAAGGATGTGG 59.247 52.381 0.00 0.00 0.00 4.17
96 97 1.135721 GATGAGGCAAAAGGATGTGGC 59.864 52.381 0.00 0.00 40.46 5.01
97 98 0.899717 TGAGGCAAAAGGATGTGGCC 60.900 55.000 0.00 0.00 41.03 5.36
98 99 1.937546 GAGGCAAAAGGATGTGGCCG 61.938 60.000 0.00 0.00 41.03 6.13
99 100 2.125952 GCAAAAGGATGTGGCCGC 60.126 61.111 10.11 10.11 0.00 6.53
100 101 2.179018 CAAAAGGATGTGGCCGCG 59.821 61.111 12.58 0.00 0.00 6.46
101 102 3.747976 AAAAGGATGTGGCCGCGC 61.748 61.111 12.58 6.10 0.00 6.86
132 133 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
133 134 2.124983 CACCGCATCCCAGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
134 135 3.402681 ACCGCATCCCAGGACAGG 61.403 66.667 0.00 0.00 0.00 4.00
135 136 4.864334 CCGCATCCCAGGACAGGC 62.864 72.222 0.00 0.00 0.00 4.85
136 137 4.864334 CGCATCCCAGGACAGGCC 62.864 72.222 0.00 0.00 0.00 5.19
137 138 4.512914 GCATCCCAGGACAGGCCC 62.513 72.222 0.00 0.00 37.37 5.80
138 139 4.181010 CATCCCAGGACAGGCCCG 62.181 72.222 0.00 0.00 37.37 6.13
143 144 4.394712 CAGGACAGGCCCGGACAC 62.395 72.222 0.73 0.00 37.37 3.67
146 147 4.736896 GACAGGCCCGGACACGAC 62.737 72.222 0.73 0.00 44.60 4.34
152 153 3.943691 CCCGGACACGACCCCAAA 61.944 66.667 0.73 0.00 44.60 3.28
153 154 2.349755 CCGGACACGACCCCAAAT 59.650 61.111 0.00 0.00 44.60 2.32
154 155 1.743995 CCGGACACGACCCCAAATC 60.744 63.158 0.00 0.00 44.60 2.17
155 156 1.743995 CGGACACGACCCCAAATCC 60.744 63.158 0.00 0.00 44.60 3.01
156 157 1.378119 GGACACGACCCCAAATCCC 60.378 63.158 0.00 0.00 0.00 3.85
157 158 1.683441 GACACGACCCCAAATCCCT 59.317 57.895 0.00 0.00 0.00 4.20
158 159 0.906775 GACACGACCCCAAATCCCTA 59.093 55.000 0.00 0.00 0.00 3.53
159 160 1.489230 GACACGACCCCAAATCCCTAT 59.511 52.381 0.00 0.00 0.00 2.57
160 161 1.489230 ACACGACCCCAAATCCCTATC 59.511 52.381 0.00 0.00 0.00 2.08
161 162 1.137697 ACGACCCCAAATCCCTATCC 58.862 55.000 0.00 0.00 0.00 2.59
162 163 1.136828 CGACCCCAAATCCCTATCCA 58.863 55.000 0.00 0.00 0.00 3.41
163 164 1.493022 CGACCCCAAATCCCTATCCAA 59.507 52.381 0.00 0.00 0.00 3.53
164 165 2.092103 CGACCCCAAATCCCTATCCAAA 60.092 50.000 0.00 0.00 0.00 3.28
165 166 3.566351 GACCCCAAATCCCTATCCAAAG 58.434 50.000 0.00 0.00 0.00 2.77
166 167 2.247372 ACCCCAAATCCCTATCCAAAGG 59.753 50.000 0.00 0.00 36.30 3.11
178 179 1.404843 TCCAAAGGGACAAAAACCGG 58.595 50.000 0.00 0.00 38.64 5.28
179 180 1.063867 TCCAAAGGGACAAAAACCGGA 60.064 47.619 9.46 0.00 38.64 5.14
180 181 1.067974 CCAAAGGGACAAAAACCGGAC 59.932 52.381 9.46 0.00 35.59 4.79
181 182 1.751924 CAAAGGGACAAAAACCGGACA 59.248 47.619 9.46 0.00 0.00 4.02
182 183 2.146920 AAGGGACAAAAACCGGACAA 57.853 45.000 9.46 0.00 0.00 3.18
183 184 2.146920 AGGGACAAAAACCGGACAAA 57.853 45.000 9.46 0.00 0.00 2.83
184 185 2.458620 AGGGACAAAAACCGGACAAAA 58.541 42.857 9.46 0.00 0.00 2.44
185 186 2.166870 AGGGACAAAAACCGGACAAAAC 59.833 45.455 9.46 0.00 0.00 2.43
186 187 2.186891 GGACAAAAACCGGACAAAACG 58.813 47.619 9.46 0.00 0.00 3.60
193 194 3.237290 CGGACAAAACGGACGTCC 58.763 61.111 25.28 25.28 44.79 4.79
205 206 1.485943 GACGTCCGTTTGAAGTCGC 59.514 57.895 3.51 0.00 41.51 5.19
206 207 2.194591 GACGTCCGTTTGAAGTCGCG 62.195 60.000 3.51 0.00 41.51 5.87
207 208 2.170273 GTCCGTTTGAAGTCGCGC 59.830 61.111 0.00 0.00 0.00 6.86
208 209 3.399770 TCCGTTTGAAGTCGCGCG 61.400 61.111 26.76 26.76 0.00 6.86
209 210 4.424430 CCGTTTGAAGTCGCGCGG 62.424 66.667 31.69 11.75 0.00 6.46
210 211 3.698463 CGTTTGAAGTCGCGCGGT 61.698 61.111 31.69 15.43 0.00 5.68
211 212 2.127758 GTTTGAAGTCGCGCGGTG 60.128 61.111 31.69 1.17 0.00 4.94
212 213 3.342627 TTTGAAGTCGCGCGGTGG 61.343 61.111 31.69 0.71 0.00 4.61
213 214 3.793775 TTTGAAGTCGCGCGGTGGA 62.794 57.895 31.69 7.56 0.00 4.02
214 215 4.717629 TGAAGTCGCGCGGTGGAG 62.718 66.667 31.69 0.00 0.00 3.86
215 216 4.719369 GAAGTCGCGCGGTGGAGT 62.719 66.667 31.69 10.72 0.00 3.85
216 217 4.295119 AAGTCGCGCGGTGGAGTT 62.295 61.111 31.69 16.66 0.00 3.01
223 224 4.980805 GCGGTGGAGTTGGCGTGA 62.981 66.667 0.00 0.00 0.00 4.35
224 225 2.738521 CGGTGGAGTTGGCGTGAG 60.739 66.667 0.00 0.00 0.00 3.51
225 226 2.741092 GGTGGAGTTGGCGTGAGA 59.259 61.111 0.00 0.00 0.00 3.27
226 227 1.070786 GGTGGAGTTGGCGTGAGAA 59.929 57.895 0.00 0.00 0.00 2.87
227 228 0.951040 GGTGGAGTTGGCGTGAGAAG 60.951 60.000 0.00 0.00 0.00 2.85
228 229 0.033504 GTGGAGTTGGCGTGAGAAGA 59.966 55.000 0.00 0.00 0.00 2.87
229 230 0.318441 TGGAGTTGGCGTGAGAAGAG 59.682 55.000 0.00 0.00 0.00 2.85
230 231 0.603569 GGAGTTGGCGTGAGAAGAGA 59.396 55.000 0.00 0.00 0.00 3.10
231 232 1.403514 GGAGTTGGCGTGAGAAGAGAG 60.404 57.143 0.00 0.00 0.00 3.20
232 233 0.605589 AGTTGGCGTGAGAAGAGAGG 59.394 55.000 0.00 0.00 0.00 3.69
233 234 0.603569 GTTGGCGTGAGAAGAGAGGA 59.396 55.000 0.00 0.00 0.00 3.71
234 235 1.000955 GTTGGCGTGAGAAGAGAGGAA 59.999 52.381 0.00 0.00 0.00 3.36
235 236 1.338107 TGGCGTGAGAAGAGAGGAAA 58.662 50.000 0.00 0.00 0.00 3.13
236 237 1.273606 TGGCGTGAGAAGAGAGGAAAG 59.726 52.381 0.00 0.00 0.00 2.62
244 245 4.016666 TGAGAAGAGAGGAAAGGAGAGGAT 60.017 45.833 0.00 0.00 0.00 3.24
254 255 0.111639 AGGAGAGGATAGGTCGGAGC 59.888 60.000 0.00 0.00 0.00 4.70
256 257 1.530323 GAGAGGATAGGTCGGAGCTC 58.470 60.000 13.76 4.71 0.00 4.09
262 267 1.338655 GATAGGTCGGAGCTCAAGGAC 59.661 57.143 17.19 17.87 0.00 3.85
348 359 3.296854 TCACCTAGATCATGTACCGCTT 58.703 45.455 0.00 0.00 0.00 4.68
349 360 3.068165 TCACCTAGATCATGTACCGCTTG 59.932 47.826 0.00 0.00 0.00 4.01
351 362 3.451178 ACCTAGATCATGTACCGCTTGTT 59.549 43.478 0.00 0.00 0.00 2.83
352 363 4.081087 ACCTAGATCATGTACCGCTTGTTT 60.081 41.667 0.00 0.00 0.00 2.83
354 391 3.009723 AGATCATGTACCGCTTGTTTGG 58.990 45.455 0.00 0.00 0.00 3.28
371 408 9.220635 GCTTGTTTGGTTTCATTTCAAAAATAC 57.779 29.630 0.00 0.00 33.05 1.89
386 428 8.877864 TTCAAAAATACAACTACTGGATGGAT 57.122 30.769 0.00 0.00 0.00 3.41
401 443 4.402155 TGGATGGATGGTGCAGTTTTATTC 59.598 41.667 0.00 0.00 0.00 1.75
404 446 5.132897 TGGATGGTGCAGTTTTATTCAAC 57.867 39.130 0.00 0.00 0.00 3.18
410 452 7.055667 TGGTGCAGTTTTATTCAACCAAATA 57.944 32.000 0.00 0.00 0.00 1.40
420 462 5.852282 ATTCAACCAAATAATTCCCTCCG 57.148 39.130 0.00 0.00 0.00 4.63
431 473 2.668144 TTCCCTCCGGAAAAACATGT 57.332 45.000 5.23 0.00 45.54 3.21
433 475 1.173913 CCCTCCGGAAAAACATGTCC 58.826 55.000 5.23 0.00 0.00 4.02
436 478 2.552155 CCTCCGGAAAAACATGTCCTCA 60.552 50.000 5.23 0.00 0.00 3.86
439 481 3.756434 TCCGGAAAAACATGTCCTCATTC 59.244 43.478 0.00 0.00 31.15 2.67
440 482 3.758554 CCGGAAAAACATGTCCTCATTCT 59.241 43.478 0.00 0.00 31.15 2.40
441 483 4.218417 CCGGAAAAACATGTCCTCATTCTT 59.782 41.667 0.00 0.00 31.15 2.52
507 561 5.071370 AGGAGTAATACGACTAGATGGTGG 58.929 45.833 0.00 0.00 0.00 4.61
512 566 2.743636 ACGACTAGATGGTGGTGTTG 57.256 50.000 0.00 0.00 0.00 3.33
520 574 1.812571 GATGGTGGTGTTGTTAGGCAG 59.187 52.381 0.00 0.00 0.00 4.85
533 647 5.708736 TGTTAGGCAGATAATTTCCTCCA 57.291 39.130 0.00 0.00 0.00 3.86
535 649 5.428457 TGTTAGGCAGATAATTTCCTCCAGA 59.572 40.000 0.00 0.00 0.00 3.86
584 704 3.951306 TGCATTCGCATGTAAATGTAGC 58.049 40.909 17.76 8.86 45.36 3.58
600 720 1.136336 GTAGCTTCGACTTGTTTGCCG 60.136 52.381 0.00 0.00 0.00 5.69
601 721 0.814010 AGCTTCGACTTGTTTGCCGT 60.814 50.000 0.00 0.00 0.00 5.68
603 723 1.920272 GCTTCGACTTGTTTGCCGTTC 60.920 52.381 0.00 0.00 0.00 3.95
628 748 1.136891 GCCTTGCAACAAACTCCACTT 59.863 47.619 0.00 0.00 0.00 3.16
634 754 3.876914 TGCAACAAACTCCACTTCTACTG 59.123 43.478 0.00 0.00 0.00 2.74
635 755 3.251004 GCAACAAACTCCACTTCTACTGG 59.749 47.826 0.00 0.00 0.00 4.00
636 756 3.127425 ACAAACTCCACTTCTACTGGC 57.873 47.619 0.00 0.00 0.00 4.85
660 786 3.057969 TGGAGACATTTGCACCAGTAG 57.942 47.619 0.00 0.00 33.40 2.57
662 788 3.072330 TGGAGACATTTGCACCAGTAGAA 59.928 43.478 0.00 0.00 33.40 2.10
666 792 6.076981 AGACATTTGCACCAGTAGAAAAAG 57.923 37.500 0.00 0.00 0.00 2.27
667 793 5.827797 AGACATTTGCACCAGTAGAAAAAGA 59.172 36.000 0.00 0.00 0.00 2.52
670 796 6.980397 ACATTTGCACCAGTAGAAAAAGAAAG 59.020 34.615 0.00 0.00 0.00 2.62
672 798 6.377327 TTGCACCAGTAGAAAAAGAAAGAG 57.623 37.500 0.00 0.00 0.00 2.85
675 801 5.278022 GCACCAGTAGAAAAAGAAAGAGGTG 60.278 44.000 0.00 0.00 44.12 4.00
676 802 5.823045 CACCAGTAGAAAAAGAAAGAGGTGT 59.177 40.000 0.00 0.00 38.32 4.16
677 803 5.823045 ACCAGTAGAAAAAGAAAGAGGTGTG 59.177 40.000 0.00 0.00 0.00 3.82
678 804 5.239525 CCAGTAGAAAAAGAAAGAGGTGTGG 59.760 44.000 0.00 0.00 0.00 4.17
679 805 6.055588 CAGTAGAAAAAGAAAGAGGTGTGGA 58.944 40.000 0.00 0.00 0.00 4.02
680 806 6.542370 CAGTAGAAAAAGAAAGAGGTGTGGAA 59.458 38.462 0.00 0.00 0.00 3.53
681 807 5.836821 AGAAAAAGAAAGAGGTGTGGAAC 57.163 39.130 0.00 0.00 37.35 3.62
719 845 0.871722 GCACGTAAGGCACATTCACA 59.128 50.000 0.00 0.00 46.39 3.58
720 846 1.135972 GCACGTAAGGCACATTCACAG 60.136 52.381 0.00 0.00 46.39 3.66
721 847 1.464608 CACGTAAGGCACATTCACAGG 59.535 52.381 0.00 0.00 46.39 4.00
722 848 1.346395 ACGTAAGGCACATTCACAGGA 59.654 47.619 0.00 0.00 46.39 3.86
723 849 2.002586 CGTAAGGCACATTCACAGGAG 58.997 52.381 0.00 0.00 0.00 3.69
724 850 2.353704 CGTAAGGCACATTCACAGGAGA 60.354 50.000 0.00 0.00 0.00 3.71
769 895 1.982958 ACATGGAGAACCGGGTTAACT 59.017 47.619 13.38 6.61 39.42 2.24
797 924 6.013293 AGACCCTCCCTAATCAGTAATATTGC 60.013 42.308 0.00 0.00 0.00 3.56
800 930 7.038231 ACCCTCCCTAATCAGTAATATTGCTAC 60.038 40.741 5.69 0.00 0.00 3.58
832 962 9.529823 CTATACTAATCATAGTTAGTGGGTGGA 57.470 37.037 9.01 0.00 43.00 4.02
833 963 6.732896 ACTAATCATAGTTAGTGGGTGGAG 57.267 41.667 0.00 0.00 41.90 3.86
834 964 6.203072 ACTAATCATAGTTAGTGGGTGGAGT 58.797 40.000 0.00 0.00 41.90 3.85
913 1043 1.281656 GCGGACCAACAAAACCGAG 59.718 57.895 0.00 0.00 46.94 4.63
939 1084 1.592400 AACGCACTGGACGCTAGCTA 61.592 55.000 13.93 0.00 0.00 3.32
940 1085 1.298713 CGCACTGGACGCTAGCTAG 60.299 63.158 16.84 16.84 0.00 3.42
942 1087 2.010582 GCACTGGACGCTAGCTAGCT 62.011 60.000 36.02 25.39 46.85 3.32
943 1088 0.248825 CACTGGACGCTAGCTAGCTG 60.249 60.000 36.02 30.39 46.85 4.24
944 1089 1.299773 CTGGACGCTAGCTAGCTGC 60.300 63.158 36.02 27.95 46.85 5.25
1143 1300 2.431771 TCGCCCATGTTCGTGTCG 60.432 61.111 0.00 0.00 0.00 4.35
1264 1421 3.229659 AAGGGCAGCAAGAAGGGGG 62.230 63.158 0.00 0.00 0.00 5.40
1558 1715 4.877619 TCGGCTCGGCGGAGAGAT 62.878 66.667 24.11 0.00 43.27 2.75
1608 1765 2.993853 GGTGGCAAGGAGGAGGAG 59.006 66.667 0.00 0.00 0.00 3.69
1611 1768 1.160870 TGGCAAGGAGGAGGAGGAA 59.839 57.895 0.00 0.00 0.00 3.36
1612 1769 0.911525 TGGCAAGGAGGAGGAGGAAG 60.912 60.000 0.00 0.00 0.00 3.46
1613 1770 0.618968 GGCAAGGAGGAGGAGGAAGA 60.619 60.000 0.00 0.00 0.00 2.87
1614 1771 0.829990 GCAAGGAGGAGGAGGAAGAG 59.170 60.000 0.00 0.00 0.00 2.85
1615 1772 1.899438 GCAAGGAGGAGGAGGAAGAGT 60.899 57.143 0.00 0.00 0.00 3.24
1616 1773 1.830477 CAAGGAGGAGGAGGAAGAGTG 59.170 57.143 0.00 0.00 0.00 3.51
1617 1774 0.325203 AGGAGGAGGAGGAAGAGTGC 60.325 60.000 0.00 0.00 0.00 4.40
1622 1779 0.681564 GAGGAGGAAGAGTGCGAGGA 60.682 60.000 0.00 0.00 0.00 3.71
1629 1786 2.757917 GAGTGCGAGGAGGAGGCT 60.758 66.667 0.00 0.00 0.00 4.58
1771 1928 4.367023 CGTCGCCGGTCCAGGAAA 62.367 66.667 1.90 0.00 0.00 3.13
1772 1929 2.267961 GTCGCCGGTCCAGGAAAT 59.732 61.111 1.90 0.00 0.00 2.17
1773 1930 2.106683 GTCGCCGGTCCAGGAAATG 61.107 63.158 1.90 0.00 0.00 2.32
2043 2242 1.153939 CACGCAGGAAGACGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
2047 2246 0.459411 GCAGGAAGACGAGGAGAAGC 60.459 60.000 0.00 0.00 0.00 3.86
2048 2247 0.174617 CAGGAAGACGAGGAGAAGCC 59.825 60.000 0.00 0.00 0.00 4.35
2051 2250 2.214181 GAAGACGAGGAGAAGCCGCA 62.214 60.000 0.00 0.00 43.43 5.69
2061 2260 0.320771 AGAAGCCGCACGAACAAGAT 60.321 50.000 0.00 0.00 0.00 2.40
2079 2278 2.579241 ATCACGAAGCCGACGACGAG 62.579 60.000 9.28 0.00 42.66 4.18
2082 2281 2.100603 GAAGCCGACGACGAGGAG 59.899 66.667 9.28 0.00 42.66 3.69
2091 2290 1.077644 CGACGAGGAGGAGGAGGAA 60.078 63.158 0.00 0.00 0.00 3.36
2110 2309 0.179124 AGACGAAGCGGAAGAGATGC 60.179 55.000 0.00 0.00 0.00 3.91
2187 2386 2.510238 GCTGCGGCGAAGATGTCT 60.510 61.111 21.50 0.00 0.00 3.41
2188 2387 1.226974 GCTGCGGCGAAGATGTCTA 60.227 57.895 21.50 0.00 0.00 2.59
2321 2520 1.569479 GCTTTGACCGGTCACTGAGC 61.569 60.000 36.40 34.41 39.66 4.26
2332 2557 1.518133 CACTGAGCGAGTAGGCTGC 60.518 63.158 0.00 0.00 44.93 5.25
2393 2618 3.182572 GCTGTCGATTAAATCTAGCACGG 59.817 47.826 0.00 0.00 32.40 4.94
2394 2619 4.360563 CTGTCGATTAAATCTAGCACGGT 58.639 43.478 0.00 0.00 0.00 4.83
2395 2620 5.503662 TGTCGATTAAATCTAGCACGGTA 57.496 39.130 0.00 0.00 0.00 4.02
2396 2621 5.893687 TGTCGATTAAATCTAGCACGGTAA 58.106 37.500 0.00 0.00 0.00 2.85
2433 2659 2.205074 CCATTCTCATTTCTCCGTCCG 58.795 52.381 0.00 0.00 0.00 4.79
2443 2669 1.107538 TCTCCGTCCGTCCATCCATC 61.108 60.000 0.00 0.00 0.00 3.51
2462 2704 5.360714 TCCATCCATGCCTGTAAAAAGATTC 59.639 40.000 0.00 0.00 0.00 2.52
2473 2715 6.035758 CCTGTAAAAAGATTCACGTACCTAGC 59.964 42.308 0.00 0.00 0.00 3.42
2514 2756 4.522971 GCCACTAGCACTGCTACC 57.477 61.111 6.66 0.00 42.97 3.18
2531 2773 7.702772 CACTGCTACCACTACTTGTTTATCTAG 59.297 40.741 0.00 0.00 0.00 2.43
2538 2780 6.874134 CCACTACTTGTTTATCTAGCACTGTT 59.126 38.462 0.00 0.00 0.00 3.16
2539 2781 8.033038 CCACTACTTGTTTATCTAGCACTGTTA 58.967 37.037 0.00 0.00 0.00 2.41
2540 2782 8.861101 CACTACTTGTTTATCTAGCACTGTTAC 58.139 37.037 0.00 0.00 0.00 2.50
2541 2783 6.946229 ACTTGTTTATCTAGCACTGTTACG 57.054 37.500 0.00 0.00 0.00 3.18
2542 2784 5.347907 ACTTGTTTATCTAGCACTGTTACGC 59.652 40.000 0.00 0.00 0.00 4.42
2543 2785 4.811908 TGTTTATCTAGCACTGTTACGCA 58.188 39.130 0.00 0.00 0.00 5.24
2544 2786 5.231702 TGTTTATCTAGCACTGTTACGCAA 58.768 37.500 0.00 0.00 0.00 4.85
2546 2788 6.370442 TGTTTATCTAGCACTGTTACGCAAAT 59.630 34.615 0.00 0.00 0.00 2.32
2547 2789 6.978343 TTATCTAGCACTGTTACGCAAATT 57.022 33.333 0.00 0.00 0.00 1.82
2550 2792 2.998772 AGCACTGTTACGCAAATTGTG 58.001 42.857 4.83 4.83 0.00 3.33
2551 2793 2.357637 AGCACTGTTACGCAAATTGTGT 59.642 40.909 16.68 16.68 44.22 3.72
2552 2794 2.467305 GCACTGTTACGCAAATTGTGTG 59.533 45.455 20.95 7.68 41.73 3.82
2577 2819 0.037697 AGCCACGATGCGTCTGTTAA 60.038 50.000 4.05 0.00 38.32 2.01
2586 2828 1.801771 TGCGTCTGTTAAATCCAACCG 59.198 47.619 0.00 0.00 0.00 4.44
2597 2839 2.185310 ATCCAACCGTCTCTGGTGCC 62.185 60.000 0.00 0.00 42.89 5.01
2604 2846 1.302033 GTCTCTGGTGCCACTGTGG 60.302 63.158 22.46 22.46 41.55 4.17
2666 2925 8.689972 ACATGTACTGGTATACTGTTAAGTACC 58.310 37.037 19.04 0.00 41.69 3.34
2667 2926 7.320443 TGTACTGGTATACTGTTAAGTACCG 57.680 40.000 19.04 0.00 41.69 4.02
2706 2965 3.508762 CATGAATGAGCTTTGTCCTTGC 58.491 45.455 0.00 0.00 0.00 4.01
2710 2969 4.039488 TGAATGAGCTTTGTCCTTGCAAAT 59.961 37.500 0.00 0.00 37.66 2.32
2711 2970 3.374220 TGAGCTTTGTCCTTGCAAATG 57.626 42.857 0.00 0.00 37.66 2.32
2712 2971 2.694628 TGAGCTTTGTCCTTGCAAATGT 59.305 40.909 0.00 0.00 37.66 2.71
2726 2985 7.865385 TCCTTGCAAATGTATTAAACACAACTC 59.135 33.333 0.00 0.00 42.09 3.01
2729 2988 5.219768 GCAAATGTATTAAACACAACTCGCG 60.220 40.000 0.00 0.00 42.09 5.87
2744 3003 3.782244 GCGCACCTGCTTCACTCG 61.782 66.667 0.30 0.00 39.32 4.18
2770 3029 1.541379 CCTCCCAACTTTTTACCCCG 58.459 55.000 0.00 0.00 0.00 5.73
2797 3062 1.536922 CCGGCAGCAGATGTACTACTG 60.537 57.143 12.95 12.95 41.52 2.74
2851 3129 1.745653 GCTGCAGAAATAACAGGTCCC 59.254 52.381 20.43 0.00 31.94 4.46
2898 3176 4.070552 ACTCTCGCGCCCCTGTTC 62.071 66.667 0.00 0.00 0.00 3.18
2920 3198 1.226128 GCAGCCATCTCGTTTTCGC 60.226 57.895 0.00 0.00 43.73 4.70
2955 3233 2.125106 CCTCGTAGTTGCAGGGCC 60.125 66.667 0.00 0.00 0.00 5.80
3013 3291 3.207474 AGCCACGTTACGTTACACTAG 57.793 47.619 7.98 0.00 38.32 2.57
3014 3292 2.554032 AGCCACGTTACGTTACACTAGT 59.446 45.455 7.98 0.00 38.32 2.57
3015 3293 3.751175 AGCCACGTTACGTTACACTAGTA 59.249 43.478 7.98 0.00 38.32 1.82
3016 3294 4.091424 GCCACGTTACGTTACACTAGTAG 58.909 47.826 7.98 0.00 38.32 2.57
3017 3295 4.651994 CCACGTTACGTTACACTAGTAGG 58.348 47.826 7.98 0.00 38.32 3.18
3018 3296 4.391830 CCACGTTACGTTACACTAGTAGGA 59.608 45.833 7.98 0.00 38.32 2.94
3019 3297 5.446473 CCACGTTACGTTACACTAGTAGGAG 60.446 48.000 7.98 0.00 38.32 3.69
3076 3391 5.831525 ACCACGGTAAGAAAAGAAAAGGATT 59.168 36.000 0.00 0.00 0.00 3.01
3090 3405 7.579761 AGAAAAGGATTAGAGGAATTGATGC 57.420 36.000 0.00 0.00 0.00 3.91
3107 3422 0.250295 TGCGAGGTTTGACTTGGGAG 60.250 55.000 0.00 0.00 0.00 4.30
3207 3538 1.812922 GACACTGCAGATCAGCGGG 60.813 63.158 23.35 12.15 46.76 6.13
3208 3539 2.267006 CACTGCAGATCAGCGGGT 59.733 61.111 23.35 12.21 46.76 5.28
3215 3546 1.004560 AGATCAGCGGGTGTGTGTG 60.005 57.895 7.12 0.00 0.00 3.82
3231 3562 2.283298 GTGTGTGTATGAGAGGGCATG 58.717 52.381 0.00 0.00 0.00 4.06
3232 3563 1.908619 TGTGTGTATGAGAGGGCATGT 59.091 47.619 0.00 0.00 0.00 3.21
3292 3623 4.314440 GTGCTCCAGTGTGGCGGA 62.314 66.667 0.00 0.00 37.47 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.885644 CCGAGTTCATCACGCCGG 60.886 66.667 0.00 0.00 39.16 6.13
1 2 2.885644 CCCGAGTTCATCACGCCG 60.886 66.667 0.00 0.00 0.00 6.46
2 3 1.810030 GACCCGAGTTCATCACGCC 60.810 63.158 0.00 0.00 0.00 5.68
3 4 2.158959 CGACCCGAGTTCATCACGC 61.159 63.158 0.00 0.00 0.00 5.34
4 5 1.071019 CACGACCCGAGTTCATCACG 61.071 60.000 0.00 0.00 0.00 4.35
5 6 0.242825 TCACGACCCGAGTTCATCAC 59.757 55.000 0.00 0.00 0.00 3.06
6 7 0.963225 TTCACGACCCGAGTTCATCA 59.037 50.000 0.00 0.00 0.00 3.07
7 8 1.067776 AGTTCACGACCCGAGTTCATC 60.068 52.381 0.00 0.00 0.00 2.92
8 9 0.966920 AGTTCACGACCCGAGTTCAT 59.033 50.000 0.00 0.00 0.00 2.57
9 10 0.031585 CAGTTCACGACCCGAGTTCA 59.968 55.000 0.00 0.00 0.00 3.18
10 11 0.666577 CCAGTTCACGACCCGAGTTC 60.667 60.000 0.00 0.00 0.00 3.01
11 12 1.366366 CCAGTTCACGACCCGAGTT 59.634 57.895 0.00 0.00 0.00 3.01
12 13 2.571216 CCCAGTTCACGACCCGAGT 61.571 63.158 0.00 0.00 0.00 4.18
13 14 2.261671 CCCAGTTCACGACCCGAG 59.738 66.667 0.00 0.00 0.00 4.63
14 15 3.307906 CCCCAGTTCACGACCCGA 61.308 66.667 0.00 0.00 0.00 5.14
16 17 3.192103 AAGCCCCAGTTCACGACCC 62.192 63.158 0.00 0.00 0.00 4.46
17 18 1.966451 CAAGCCCCAGTTCACGACC 60.966 63.158 0.00 0.00 0.00 4.79
18 19 1.966451 CCAAGCCCCAGTTCACGAC 60.966 63.158 0.00 0.00 0.00 4.34
19 20 2.429930 CCAAGCCCCAGTTCACGA 59.570 61.111 0.00 0.00 0.00 4.35
20 21 3.365265 GCCAAGCCCCAGTTCACG 61.365 66.667 0.00 0.00 0.00 4.35
21 22 1.187567 AATGCCAAGCCCCAGTTCAC 61.188 55.000 0.00 0.00 0.00 3.18
22 23 0.471591 AAATGCCAAGCCCCAGTTCA 60.472 50.000 0.00 0.00 0.00 3.18
23 24 0.037046 CAAATGCCAAGCCCCAGTTC 60.037 55.000 0.00 0.00 0.00 3.01
24 25 0.471591 TCAAATGCCAAGCCCCAGTT 60.472 50.000 0.00 0.00 0.00 3.16
25 26 0.471591 TTCAAATGCCAAGCCCCAGT 60.472 50.000 0.00 0.00 0.00 4.00
26 27 0.686224 TTTCAAATGCCAAGCCCCAG 59.314 50.000 0.00 0.00 0.00 4.45
27 28 0.396060 GTTTCAAATGCCAAGCCCCA 59.604 50.000 0.00 0.00 0.00 4.96
28 29 0.670239 CGTTTCAAATGCCAAGCCCC 60.670 55.000 0.00 0.00 0.00 5.80
29 30 0.033366 ACGTTTCAAATGCCAAGCCC 59.967 50.000 0.00 0.00 0.00 5.19
30 31 1.792367 GAACGTTTCAAATGCCAAGCC 59.208 47.619 0.46 0.00 0.00 4.35
31 32 1.792367 GGAACGTTTCAAATGCCAAGC 59.208 47.619 0.46 0.00 0.00 4.01
32 33 3.369546 AGGAACGTTTCAAATGCCAAG 57.630 42.857 9.76 0.00 0.00 3.61
33 34 3.810310 AAGGAACGTTTCAAATGCCAA 57.190 38.095 9.76 0.00 0.00 4.52
34 35 3.810310 AAAGGAACGTTTCAAATGCCA 57.190 38.095 9.76 0.00 0.00 4.92
55 56 4.567971 TCCTGTCCGCGTCTATTTAAAAA 58.432 39.130 4.92 0.00 0.00 1.94
56 57 4.191033 TCCTGTCCGCGTCTATTTAAAA 57.809 40.909 4.92 0.00 0.00 1.52
57 58 3.872511 TCCTGTCCGCGTCTATTTAAA 57.127 42.857 4.92 0.00 0.00 1.52
58 59 3.382227 TCATCCTGTCCGCGTCTATTTAA 59.618 43.478 4.92 0.00 0.00 1.52
59 60 2.953648 TCATCCTGTCCGCGTCTATTTA 59.046 45.455 4.92 0.00 0.00 1.40
60 61 1.754803 TCATCCTGTCCGCGTCTATTT 59.245 47.619 4.92 0.00 0.00 1.40
61 62 1.338337 CTCATCCTGTCCGCGTCTATT 59.662 52.381 4.92 0.00 0.00 1.73
62 63 0.955178 CTCATCCTGTCCGCGTCTAT 59.045 55.000 4.92 0.00 0.00 1.98
63 64 1.101635 CCTCATCCTGTCCGCGTCTA 61.102 60.000 4.92 0.00 0.00 2.59
64 65 2.418910 CCTCATCCTGTCCGCGTCT 61.419 63.158 4.92 0.00 0.00 4.18
65 66 2.105128 CCTCATCCTGTCCGCGTC 59.895 66.667 4.92 0.00 0.00 5.19
66 67 4.148825 GCCTCATCCTGTCCGCGT 62.149 66.667 4.92 0.00 0.00 6.01
67 68 3.664025 TTGCCTCATCCTGTCCGCG 62.664 63.158 0.00 0.00 0.00 6.46
68 69 0.960364 TTTTGCCTCATCCTGTCCGC 60.960 55.000 0.00 0.00 0.00 5.54
69 70 1.089920 CTTTTGCCTCATCCTGTCCG 58.910 55.000 0.00 0.00 0.00 4.79
70 71 1.004745 TCCTTTTGCCTCATCCTGTCC 59.995 52.381 0.00 0.00 0.00 4.02
71 72 2.496899 TCCTTTTGCCTCATCCTGTC 57.503 50.000 0.00 0.00 0.00 3.51
72 73 2.042162 ACATCCTTTTGCCTCATCCTGT 59.958 45.455 0.00 0.00 0.00 4.00
73 74 2.426024 CACATCCTTTTGCCTCATCCTG 59.574 50.000 0.00 0.00 0.00 3.86
74 75 2.622452 CCACATCCTTTTGCCTCATCCT 60.622 50.000 0.00 0.00 0.00 3.24
75 76 1.753073 CCACATCCTTTTGCCTCATCC 59.247 52.381 0.00 0.00 0.00 3.51
76 77 1.135721 GCCACATCCTTTTGCCTCATC 59.864 52.381 0.00 0.00 0.00 2.92
77 78 1.188863 GCCACATCCTTTTGCCTCAT 58.811 50.000 0.00 0.00 0.00 2.90
78 79 0.899717 GGCCACATCCTTTTGCCTCA 60.900 55.000 0.00 0.00 39.05 3.86
79 80 1.893062 GGCCACATCCTTTTGCCTC 59.107 57.895 0.00 0.00 39.05 4.70
80 81 1.978617 CGGCCACATCCTTTTGCCT 60.979 57.895 2.24 0.00 39.97 4.75
81 82 2.573340 CGGCCACATCCTTTTGCC 59.427 61.111 2.24 0.00 38.74 4.52
82 83 2.125952 GCGGCCACATCCTTTTGC 60.126 61.111 2.24 0.00 0.00 3.68
83 84 2.179018 CGCGGCCACATCCTTTTG 59.821 61.111 2.24 0.00 0.00 2.44
84 85 3.747976 GCGCGGCCACATCCTTTT 61.748 61.111 8.83 0.00 0.00 2.27
115 116 3.687321 CTGTCCTGGGATGCGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
116 117 2.124983 CTGTCCTGGGATGCGGTG 60.125 66.667 0.00 0.00 0.00 4.94
117 118 3.402681 CCTGTCCTGGGATGCGGT 61.403 66.667 0.00 0.00 0.00 5.68
118 119 4.864334 GCCTGTCCTGGGATGCGG 62.864 72.222 0.00 0.00 0.00 5.69
119 120 4.864334 GGCCTGTCCTGGGATGCG 62.864 72.222 0.00 0.00 0.00 4.73
120 121 4.512914 GGGCCTGTCCTGGGATGC 62.513 72.222 0.84 0.00 34.39 3.91
121 122 4.181010 CGGGCCTGTCCTGGGATG 62.181 72.222 2.29 0.00 37.58 3.51
126 127 4.394712 GTGTCCGGGCCTGTCCTG 62.395 72.222 11.58 0.00 41.11 3.86
129 130 4.736896 GTCGTGTCCGGGCCTGTC 62.737 72.222 11.58 3.86 33.95 3.51
135 136 3.262448 ATTTGGGGTCGTGTCCGGG 62.262 63.158 0.00 0.00 33.95 5.73
136 137 1.743995 GATTTGGGGTCGTGTCCGG 60.744 63.158 0.00 0.00 33.95 5.14
137 138 1.743995 GGATTTGGGGTCGTGTCCG 60.744 63.158 0.00 0.00 0.00 4.79
138 139 1.378119 GGGATTTGGGGTCGTGTCC 60.378 63.158 0.00 0.00 0.00 4.02
139 140 0.906775 TAGGGATTTGGGGTCGTGTC 59.093 55.000 0.00 0.00 0.00 3.67
140 141 1.489230 GATAGGGATTTGGGGTCGTGT 59.511 52.381 0.00 0.00 0.00 4.49
141 142 1.202770 GGATAGGGATTTGGGGTCGTG 60.203 57.143 0.00 0.00 0.00 4.35
142 143 1.137697 GGATAGGGATTTGGGGTCGT 58.862 55.000 0.00 0.00 0.00 4.34
143 144 1.136828 TGGATAGGGATTTGGGGTCG 58.863 55.000 0.00 0.00 0.00 4.79
144 145 3.566351 CTTTGGATAGGGATTTGGGGTC 58.434 50.000 0.00 0.00 0.00 4.46
145 146 2.247372 CCTTTGGATAGGGATTTGGGGT 59.753 50.000 0.00 0.00 0.00 4.95
146 147 2.962859 CCTTTGGATAGGGATTTGGGG 58.037 52.381 0.00 0.00 0.00 4.96
155 156 3.192633 CGGTTTTTGTCCCTTTGGATAGG 59.807 47.826 0.00 0.00 44.28 2.57
156 157 3.192633 CCGGTTTTTGTCCCTTTGGATAG 59.807 47.826 0.00 0.00 44.28 2.08
157 158 3.158676 CCGGTTTTTGTCCCTTTGGATA 58.841 45.455 0.00 0.00 44.28 2.59
158 159 1.967779 CCGGTTTTTGTCCCTTTGGAT 59.032 47.619 0.00 0.00 44.28 3.41
159 160 1.063867 TCCGGTTTTTGTCCCTTTGGA 60.064 47.619 0.00 0.00 38.75 3.53
160 161 1.067974 GTCCGGTTTTTGTCCCTTTGG 59.932 52.381 0.00 0.00 0.00 3.28
161 162 1.751924 TGTCCGGTTTTTGTCCCTTTG 59.248 47.619 0.00 0.00 0.00 2.77
162 163 2.146920 TGTCCGGTTTTTGTCCCTTT 57.853 45.000 0.00 0.00 0.00 3.11
163 164 2.146920 TTGTCCGGTTTTTGTCCCTT 57.853 45.000 0.00 0.00 0.00 3.95
164 165 2.146920 TTTGTCCGGTTTTTGTCCCT 57.853 45.000 0.00 0.00 0.00 4.20
165 166 2.542597 GTTTTGTCCGGTTTTTGTCCC 58.457 47.619 0.00 0.00 0.00 4.46
166 167 2.186891 CGTTTTGTCCGGTTTTTGTCC 58.813 47.619 0.00 0.00 0.00 4.02
167 168 2.159407 TCCGTTTTGTCCGGTTTTTGTC 60.159 45.455 0.00 0.00 45.63 3.18
168 169 1.817447 TCCGTTTTGTCCGGTTTTTGT 59.183 42.857 0.00 0.00 45.63 2.83
169 170 2.186891 GTCCGTTTTGTCCGGTTTTTG 58.813 47.619 0.00 0.00 45.63 2.44
170 171 1.202166 CGTCCGTTTTGTCCGGTTTTT 60.202 47.619 0.00 0.00 45.63 1.94
171 172 0.377905 CGTCCGTTTTGTCCGGTTTT 59.622 50.000 0.00 0.00 45.63 2.43
172 173 0.744057 ACGTCCGTTTTGTCCGGTTT 60.744 50.000 0.00 0.00 45.63 3.27
173 174 1.153389 ACGTCCGTTTTGTCCGGTT 60.153 52.632 0.00 0.00 45.63 4.44
174 175 1.592400 GACGTCCGTTTTGTCCGGT 60.592 57.895 3.51 0.00 45.63 5.28
175 176 2.312436 GGACGTCCGTTTTGTCCGG 61.312 63.158 20.85 0.00 42.42 5.14
176 177 3.237290 GGACGTCCGTTTTGTCCG 58.763 61.111 20.85 0.00 42.42 4.79
186 187 1.883725 GCGACTTCAAACGGACGTCC 61.884 60.000 25.28 25.28 40.65 4.79
187 188 1.485943 GCGACTTCAAACGGACGTC 59.514 57.895 7.13 7.13 40.41 4.34
188 189 2.297912 CGCGACTTCAAACGGACGT 61.298 57.895 0.00 0.00 0.00 4.34
189 190 2.464189 CGCGACTTCAAACGGACG 59.536 61.111 0.00 0.00 0.00 4.79
190 191 2.170273 GCGCGACTTCAAACGGAC 59.830 61.111 12.10 0.00 0.00 4.79
191 192 3.399770 CGCGCGACTTCAAACGGA 61.400 61.111 28.94 0.00 0.00 4.69
192 193 4.424430 CCGCGCGACTTCAAACGG 62.424 66.667 34.63 6.73 0.00 4.44
193 194 3.698463 ACCGCGCGACTTCAAACG 61.698 61.111 34.63 13.76 0.00 3.60
194 195 2.127758 CACCGCGCGACTTCAAAC 60.128 61.111 34.63 0.00 0.00 2.93
195 196 3.342627 CCACCGCGCGACTTCAAA 61.343 61.111 34.63 0.00 0.00 2.69
196 197 4.287781 TCCACCGCGCGACTTCAA 62.288 61.111 34.63 8.51 0.00 2.69
197 198 4.717629 CTCCACCGCGCGACTTCA 62.718 66.667 34.63 9.89 0.00 3.02
198 199 4.719369 ACTCCACCGCGCGACTTC 62.719 66.667 34.63 0.00 0.00 3.01
199 200 4.295119 AACTCCACCGCGCGACTT 62.295 61.111 34.63 12.58 0.00 3.01
206 207 4.980805 TCACGCCAACTCCACCGC 62.981 66.667 0.00 0.00 0.00 5.68
207 208 2.709125 TTCTCACGCCAACTCCACCG 62.709 60.000 0.00 0.00 0.00 4.94
208 209 0.951040 CTTCTCACGCCAACTCCACC 60.951 60.000 0.00 0.00 0.00 4.61
209 210 0.033504 TCTTCTCACGCCAACTCCAC 59.966 55.000 0.00 0.00 0.00 4.02
210 211 0.318441 CTCTTCTCACGCCAACTCCA 59.682 55.000 0.00 0.00 0.00 3.86
211 212 0.603569 TCTCTTCTCACGCCAACTCC 59.396 55.000 0.00 0.00 0.00 3.85
212 213 1.403514 CCTCTCTTCTCACGCCAACTC 60.404 57.143 0.00 0.00 0.00 3.01
213 214 0.605589 CCTCTCTTCTCACGCCAACT 59.394 55.000 0.00 0.00 0.00 3.16
214 215 0.603569 TCCTCTCTTCTCACGCCAAC 59.396 55.000 0.00 0.00 0.00 3.77
215 216 1.338107 TTCCTCTCTTCTCACGCCAA 58.662 50.000 0.00 0.00 0.00 4.52
216 217 1.273606 CTTTCCTCTCTTCTCACGCCA 59.726 52.381 0.00 0.00 0.00 5.69
217 218 1.404851 CCTTTCCTCTCTTCTCACGCC 60.405 57.143 0.00 0.00 0.00 5.68
218 219 1.546476 TCCTTTCCTCTCTTCTCACGC 59.454 52.381 0.00 0.00 0.00 5.34
219 220 3.085533 TCTCCTTTCCTCTCTTCTCACG 58.914 50.000 0.00 0.00 0.00 4.35
220 221 3.447229 CCTCTCCTTTCCTCTCTTCTCAC 59.553 52.174 0.00 0.00 0.00 3.51
221 222 3.335183 TCCTCTCCTTTCCTCTCTTCTCA 59.665 47.826 0.00 0.00 0.00 3.27
222 223 3.976015 TCCTCTCCTTTCCTCTCTTCTC 58.024 50.000 0.00 0.00 0.00 2.87
223 224 4.625225 ATCCTCTCCTTTCCTCTCTTCT 57.375 45.455 0.00 0.00 0.00 2.85
224 225 4.832823 CCTATCCTCTCCTTTCCTCTCTTC 59.167 50.000 0.00 0.00 0.00 2.87
225 226 4.234223 ACCTATCCTCTCCTTTCCTCTCTT 59.766 45.833 0.00 0.00 0.00 2.85
226 227 3.797269 ACCTATCCTCTCCTTTCCTCTCT 59.203 47.826 0.00 0.00 0.00 3.10
227 228 4.149598 GACCTATCCTCTCCTTTCCTCTC 58.850 52.174 0.00 0.00 0.00 3.20
228 229 3.435890 CGACCTATCCTCTCCTTTCCTCT 60.436 52.174 0.00 0.00 0.00 3.69
229 230 2.888414 CGACCTATCCTCTCCTTTCCTC 59.112 54.545 0.00 0.00 0.00 3.71
230 231 2.425102 CCGACCTATCCTCTCCTTTCCT 60.425 54.545 0.00 0.00 0.00 3.36
231 232 1.964933 CCGACCTATCCTCTCCTTTCC 59.035 57.143 0.00 0.00 0.00 3.13
232 233 2.888414 CTCCGACCTATCCTCTCCTTTC 59.112 54.545 0.00 0.00 0.00 2.62
233 234 2.952116 CTCCGACCTATCCTCTCCTTT 58.048 52.381 0.00 0.00 0.00 3.11
234 235 1.479757 GCTCCGACCTATCCTCTCCTT 60.480 57.143 0.00 0.00 0.00 3.36
235 236 0.111639 GCTCCGACCTATCCTCTCCT 59.888 60.000 0.00 0.00 0.00 3.69
236 237 0.111639 AGCTCCGACCTATCCTCTCC 59.888 60.000 0.00 0.00 0.00 3.71
244 245 1.030488 CGTCCTTGAGCTCCGACCTA 61.030 60.000 12.15 0.00 0.00 3.08
254 255 1.141881 CGACCCATCCGTCCTTGAG 59.858 63.158 0.00 0.00 0.00 3.02
256 257 1.153628 GTCGACCCATCCGTCCTTG 60.154 63.158 3.51 0.00 0.00 3.61
262 267 4.508128 CCACCGTCGACCCATCCG 62.508 72.222 10.58 0.00 0.00 4.18
371 408 2.292267 GCACCATCCATCCAGTAGTTG 58.708 52.381 0.00 0.00 0.00 3.16
373 410 1.487976 CTGCACCATCCATCCAGTAGT 59.512 52.381 0.00 0.00 0.00 2.73
386 428 5.344743 TTTGGTTGAATAAAACTGCACCA 57.655 34.783 0.00 0.00 0.00 4.17
414 456 6.928773 ATGAGGACATGTTTTTCCGGAGGG 62.929 50.000 3.34 0.00 41.47 4.30
420 462 5.473039 CCAAGAATGAGGACATGTTTTTCC 58.527 41.667 0.00 0.00 36.79 3.13
431 473 1.945819 GCAACGAGCCAAGAATGAGGA 60.946 52.381 0.00 0.00 37.23 3.71
433 475 1.159285 TGCAACGAGCCAAGAATGAG 58.841 50.000 0.00 0.00 44.83 2.90
436 478 1.131126 CGAATGCAACGAGCCAAGAAT 59.869 47.619 10.41 0.00 44.83 2.40
439 481 1.512734 GCGAATGCAACGAGCCAAG 60.513 57.895 18.21 0.00 44.83 3.61
440 482 2.560861 GCGAATGCAACGAGCCAA 59.439 55.556 18.21 0.00 44.83 4.52
482 524 6.713903 CCACCATCTAGTCGTATTACTCCTAA 59.286 42.308 0.00 0.00 0.00 2.69
491 545 3.767673 ACAACACCACCATCTAGTCGTAT 59.232 43.478 0.00 0.00 0.00 3.06
507 561 6.183360 GGAGGAAATTATCTGCCTAACAACAC 60.183 42.308 0.00 0.00 0.00 3.32
512 566 5.930135 TCTGGAGGAAATTATCTGCCTAAC 58.070 41.667 0.00 0.00 0.00 2.34
548 668 1.526575 ATGCAACGAGCCAACAAGGG 61.527 55.000 0.00 0.00 44.83 3.95
584 704 1.597663 AGAACGGCAAACAAGTCGAAG 59.402 47.619 0.00 0.00 39.34 3.79
600 720 0.459489 TTGTTGCAAGGCACCAGAAC 59.541 50.000 0.00 0.00 38.71 3.01
601 721 1.134848 GTTTGTTGCAAGGCACCAGAA 60.135 47.619 0.00 0.00 38.71 3.02
603 723 0.461135 AGTTTGTTGCAAGGCACCAG 59.539 50.000 0.00 0.00 38.71 4.00
628 748 5.674525 CAAATGTCTCCATTAGCCAGTAGA 58.325 41.667 0.00 0.00 40.42 2.59
634 754 2.099756 GGTGCAAATGTCTCCATTAGCC 59.900 50.000 0.00 0.00 40.42 3.93
635 755 2.754552 TGGTGCAAATGTCTCCATTAGC 59.245 45.455 0.00 0.00 40.42 3.09
636 756 4.012374 ACTGGTGCAAATGTCTCCATTAG 58.988 43.478 0.00 0.00 40.42 1.73
655 781 6.055588 TCCACACCTCTTTCTTTTTCTACTG 58.944 40.000 0.00 0.00 0.00 2.74
658 784 6.419791 TGTTCCACACCTCTTTCTTTTTCTA 58.580 36.000 0.00 0.00 0.00 2.10
660 786 5.576447 TGTTCCACACCTCTTTCTTTTTC 57.424 39.130 0.00 0.00 0.00 2.29
662 788 4.956075 ACATGTTCCACACCTCTTTCTTTT 59.044 37.500 0.00 0.00 0.00 2.27
666 792 3.476552 TCACATGTTCCACACCTCTTTC 58.523 45.455 0.00 0.00 0.00 2.62
667 793 3.480470 CTCACATGTTCCACACCTCTTT 58.520 45.455 0.00 0.00 0.00 2.52
670 796 1.160137 GCTCACATGTTCCACACCTC 58.840 55.000 0.00 0.00 0.00 3.85
672 798 1.577328 CGGCTCACATGTTCCACACC 61.577 60.000 0.00 0.00 0.00 4.16
675 801 0.605319 TTCCGGCTCACATGTTCCAC 60.605 55.000 0.00 0.00 0.00 4.02
676 802 0.327924 ATTCCGGCTCACATGTTCCA 59.672 50.000 0.00 0.00 0.00 3.53
677 803 1.017387 GATTCCGGCTCACATGTTCC 58.983 55.000 0.00 0.00 0.00 3.62
678 804 2.029838 AGATTCCGGCTCACATGTTC 57.970 50.000 0.00 0.00 0.00 3.18
679 805 2.086869 CAAGATTCCGGCTCACATGTT 58.913 47.619 0.00 0.00 0.00 2.71
680 806 1.679944 CCAAGATTCCGGCTCACATGT 60.680 52.381 0.00 0.00 0.00 3.21
681 807 1.019673 CCAAGATTCCGGCTCACATG 58.980 55.000 0.00 0.00 0.00 3.21
682 808 0.749454 GCCAAGATTCCGGCTCACAT 60.749 55.000 0.00 0.00 45.29 3.21
683 809 1.377202 GCCAAGATTCCGGCTCACA 60.377 57.895 0.00 0.00 45.29 3.58
719 845 1.611851 CTGGCCCTGTGACTCTCCT 60.612 63.158 0.00 0.00 0.00 3.69
720 846 1.610673 TCTGGCCCTGTGACTCTCC 60.611 63.158 0.00 0.00 0.00 3.71
721 847 0.613292 TCTCTGGCCCTGTGACTCTC 60.613 60.000 0.00 0.00 0.00 3.20
722 848 0.178921 TTCTCTGGCCCTGTGACTCT 60.179 55.000 0.00 0.00 0.00 3.24
723 849 0.908198 ATTCTCTGGCCCTGTGACTC 59.092 55.000 0.00 0.00 0.00 3.36
724 850 0.908198 GATTCTCTGGCCCTGTGACT 59.092 55.000 0.00 0.00 0.00 3.41
769 895 6.547396 ATTACTGATTAGGGAGGGTCTCTA 57.453 41.667 0.00 0.00 0.00 2.43
832 962 2.590092 GCGGGCCATTAGTCCACT 59.410 61.111 4.39 0.00 0.00 4.00
833 963 2.895372 CGCGGGCCATTAGTCCAC 60.895 66.667 4.39 0.00 0.00 4.02
834 964 4.849310 GCGCGGGCCATTAGTCCA 62.849 66.667 14.45 0.00 0.00 4.02
858 988 4.279169 CAGTTATAGATGGGCCATTGGTTG 59.721 45.833 22.20 9.31 0.00 3.77
897 1027 1.802337 GCCCTCGGTTTTGTTGGTCC 61.802 60.000 0.00 0.00 0.00 4.46
922 1067 1.298713 CTAGCTAGCGTCCAGTGCG 60.299 63.158 8.05 0.00 37.44 5.34
923 1068 1.590259 GCTAGCTAGCGTCCAGTGC 60.590 63.158 28.89 5.01 39.82 4.40
939 1084 0.752376 GGGACTACGGACTAGCAGCT 60.752 60.000 0.00 0.00 0.00 4.24
940 1085 1.035932 TGGGACTACGGACTAGCAGC 61.036 60.000 0.00 0.00 0.00 5.25
942 1087 1.688772 GATGGGACTACGGACTAGCA 58.311 55.000 0.00 0.00 0.00 3.49
943 1088 0.960286 GGATGGGACTACGGACTAGC 59.040 60.000 0.00 0.00 0.00 3.42
944 1089 2.506444 GAGGATGGGACTACGGACTAG 58.494 57.143 0.00 0.00 0.00 2.57
946 1091 0.106116 GGAGGATGGGACTACGGACT 60.106 60.000 0.00 0.00 0.00 3.85
947 1092 1.453762 CGGAGGATGGGACTACGGAC 61.454 65.000 0.00 0.00 38.60 4.79
950 1095 1.797211 GAGCGGAGGATGGGACTACG 61.797 65.000 0.00 0.00 44.92 3.51
951 1096 1.797211 CGAGCGGAGGATGGGACTAC 61.797 65.000 0.00 0.00 0.00 2.73
1291 1448 2.586792 CTTCTCCTCCTTGGCCGG 59.413 66.667 0.00 0.00 35.26 6.13
1292 1449 2.586792 CCTTCTCCTCCTTGGCCG 59.413 66.667 0.00 0.00 35.26 6.13
1558 1715 1.310933 GGGTCACTCGCCTTCTCGTA 61.311 60.000 0.00 0.00 0.00 3.43
1608 1765 1.671901 CCTCCTCCTCGCACTCTTCC 61.672 65.000 0.00 0.00 0.00 3.46
1611 1768 2.757917 GCCTCCTCCTCGCACTCT 60.758 66.667 0.00 0.00 0.00 3.24
1612 1769 2.757917 AGCCTCCTCCTCGCACTC 60.758 66.667 0.00 0.00 0.00 3.51
1613 1770 3.073735 CAGCCTCCTCCTCGCACT 61.074 66.667 0.00 0.00 0.00 4.40
1614 1771 4.828925 GCAGCCTCCTCCTCGCAC 62.829 72.222 0.00 0.00 0.00 5.34
1629 1786 4.400109 GACGACACGAGCTCCGCA 62.400 66.667 8.47 0.00 43.32 5.69
1668 1825 1.023513 GCATGAGGAGCAGAGCGTTT 61.024 55.000 0.00 0.00 0.00 3.60
1920 2119 1.237285 ACTGCAACATGTCCGGCTTC 61.237 55.000 15.36 0.00 0.00 3.86
2043 2242 0.095417 GATCTTGTTCGTGCGGCTTC 59.905 55.000 0.00 0.00 0.00 3.86
2047 2246 1.006825 TCGTGATCTTGTTCGTGCGG 61.007 55.000 0.00 0.00 0.00 5.69
2048 2247 0.781787 TTCGTGATCTTGTTCGTGCG 59.218 50.000 0.00 0.00 0.00 5.34
2051 2250 1.429463 GGCTTCGTGATCTTGTTCGT 58.571 50.000 0.00 0.00 0.00 3.85
2061 2260 3.304764 CTCGTCGTCGGCTTCGTGA 62.305 63.158 1.55 0.00 37.69 4.35
2079 2278 1.107945 CTTCGTCTTCCTCCTCCTCC 58.892 60.000 0.00 0.00 0.00 4.30
2082 2281 1.139947 CGCTTCGTCTTCCTCCTCC 59.860 63.158 0.00 0.00 0.00 4.30
2091 2290 0.179124 GCATCTCTTCCGCTTCGTCT 60.179 55.000 0.00 0.00 0.00 4.18
2130 2329 2.429058 CACCTCTGCAGCACCAGT 59.571 61.111 9.47 0.00 34.47 4.00
2172 2371 1.141019 GGTAGACATCTTCGCCGCA 59.859 57.895 0.00 0.00 0.00 5.69
2292 2491 4.389576 GTCAAAGCCACCGCAGCG 62.390 66.667 8.18 8.18 37.52 5.18
2293 2492 4.043200 GGTCAAAGCCACCGCAGC 62.043 66.667 0.00 0.00 37.52 5.25
2321 2520 1.381928 TACGGGAAGCAGCCTACTCG 61.382 60.000 2.47 2.47 0.00 4.18
2332 2557 9.294614 AGGAAAATACTACTAGTATACGGGAAG 57.705 37.037 8.84 0.00 40.32 3.46
2393 2618 7.556635 AGAATGGGGAATTACAGCTTTACTTAC 59.443 37.037 0.00 0.00 0.00 2.34
2394 2619 7.639378 AGAATGGGGAATTACAGCTTTACTTA 58.361 34.615 0.00 0.00 0.00 2.24
2395 2620 6.494059 AGAATGGGGAATTACAGCTTTACTT 58.506 36.000 0.00 0.00 0.00 2.24
2396 2621 6.079712 AGAATGGGGAATTACAGCTTTACT 57.920 37.500 0.00 0.00 0.00 2.24
2433 2659 0.184451 ACAGGCATGGATGGATGGAC 59.816 55.000 2.31 0.00 0.00 4.02
2443 2669 4.082787 ACGTGAATCTTTTTACAGGCATGG 60.083 41.667 2.31 0.00 0.00 3.66
2462 2704 1.516386 CAGCGTGGCTAGGTACGTG 60.516 63.158 0.00 0.00 41.98 4.49
2473 2715 2.932614 CAGGAGAAGATTTACAGCGTGG 59.067 50.000 0.00 0.00 0.00 4.94
2514 2756 7.891183 AACAGTGCTAGATAAACAAGTAGTG 57.109 36.000 0.00 0.00 0.00 2.74
2531 2773 2.467305 CACACAATTTGCGTAACAGTGC 59.533 45.455 10.37 0.00 30.84 4.40
2538 2780 1.681538 ACACCCACACAATTTGCGTA 58.318 45.000 0.00 0.00 0.00 4.42
2539 2781 1.606668 CTACACCCACACAATTTGCGT 59.393 47.619 0.00 0.00 0.00 5.24
2540 2782 1.665735 GCTACACCCACACAATTTGCG 60.666 52.381 0.00 0.00 0.00 4.85
2541 2783 1.336795 GGCTACACCCACACAATTTGC 60.337 52.381 0.00 0.00 0.00 3.68
2542 2784 1.959985 TGGCTACACCCACACAATTTG 59.040 47.619 0.00 0.00 37.83 2.32
2543 2785 2.373335 TGGCTACACCCACACAATTT 57.627 45.000 0.00 0.00 37.83 1.82
2551 2793 2.267642 GCATCGTGGCTACACCCA 59.732 61.111 0.00 0.00 44.86 4.51
2552 2794 2.890474 CGCATCGTGGCTACACCC 60.890 66.667 0.00 0.00 44.86 4.61
2577 2819 0.321653 GCACCAGAGACGGTTGGATT 60.322 55.000 4.41 0.00 37.07 3.01
2586 2828 1.302033 CCACAGTGGCACCAGAGAC 60.302 63.158 15.27 0.00 0.00 3.36
2597 2839 1.071299 TACTGGTGCTGCCACAGTG 59.929 57.895 26.42 0.00 43.61 3.66
2604 2846 1.760613 TGGGTATAGTACTGGTGCTGC 59.239 52.381 5.39 0.00 0.00 5.25
2608 2850 7.386851 CCAGATTATTGGGTATAGTACTGGTG 58.613 42.308 5.39 0.00 34.35 4.17
2666 2925 4.629634 TCATGGCACTGTTAAATCTACACG 59.370 41.667 0.00 0.00 0.00 4.49
2667 2926 6.494893 TTCATGGCACTGTTAAATCTACAC 57.505 37.500 0.00 0.00 0.00 2.90
2706 2965 5.219768 GCGCGAGTTGTGTTTAATACATTTG 60.220 40.000 12.10 0.00 39.39 2.32
2710 2969 2.801111 TGCGCGAGTTGTGTTTAATACA 59.199 40.909 12.10 0.00 0.00 2.29
2711 2970 3.150731 GTGCGCGAGTTGTGTTTAATAC 58.849 45.455 12.10 0.00 0.00 1.89
2712 2971 2.158058 GGTGCGCGAGTTGTGTTTAATA 59.842 45.455 12.10 0.00 0.00 0.98
2729 2988 1.005630 AGTCGAGTGAAGCAGGTGC 60.006 57.895 0.00 0.00 42.49 5.01
2744 3003 1.692411 AAAAGTTGGGAGGCACAGTC 58.308 50.000 0.00 0.00 0.00 3.51
2797 3062 3.563390 CACGGTTACTCCTAGCTAGTACC 59.437 52.174 19.31 15.23 0.00 3.34
2851 3129 0.807667 CGGAATCTCCTTCGCACAGG 60.808 60.000 0.00 0.00 33.30 4.00
2898 3176 1.915614 AAAACGAGATGGCTGCTGCG 61.916 55.000 9.65 0.00 40.82 5.18
2955 3233 1.011968 TCGCGGTCACGGATTCTTTG 61.012 55.000 6.13 0.00 41.36 2.77
2978 3256 2.295885 GTGGCTTGGATTGGATCAGAG 58.704 52.381 0.00 0.00 0.00 3.35
3013 3291 5.272397 GCTTCTCGTGTAATGTACTCCTAC 58.728 45.833 0.00 0.00 0.00 3.18
3014 3292 4.337555 GGCTTCTCGTGTAATGTACTCCTA 59.662 45.833 0.00 0.00 0.00 2.94
3015 3293 3.130693 GGCTTCTCGTGTAATGTACTCCT 59.869 47.826 0.00 0.00 0.00 3.69
3016 3294 3.130693 AGGCTTCTCGTGTAATGTACTCC 59.869 47.826 0.00 0.00 0.00 3.85
3017 3295 4.106197 CAGGCTTCTCGTGTAATGTACTC 58.894 47.826 0.00 0.00 0.00 2.59
3018 3296 3.510360 ACAGGCTTCTCGTGTAATGTACT 59.490 43.478 0.00 0.00 41.51 2.73
3019 3297 3.612860 CACAGGCTTCTCGTGTAATGTAC 59.387 47.826 0.00 0.00 41.40 2.90
3076 3391 4.081142 TCAAACCTCGCATCAATTCCTCTA 60.081 41.667 0.00 0.00 0.00 2.43
3090 3405 0.250295 TGCTCCCAAGTCAAACCTCG 60.250 55.000 0.00 0.00 0.00 4.63
3107 3422 2.434185 TCGGTTCTCACGCCATGC 60.434 61.111 0.00 0.00 0.00 4.06
3204 3535 1.000394 TCTCATACACACACACACCCG 60.000 52.381 0.00 0.00 0.00 5.28
3207 3538 2.688507 CCCTCTCATACACACACACAC 58.311 52.381 0.00 0.00 0.00 3.82
3208 3539 1.001974 GCCCTCTCATACACACACACA 59.998 52.381 0.00 0.00 0.00 3.72
3215 3546 5.730296 ACTATACATGCCCTCTCATACAC 57.270 43.478 0.00 0.00 0.00 2.90
3272 3603 2.980233 GCCACACTGGAGCACACC 60.980 66.667 0.00 0.00 40.96 4.16
3292 3623 2.262915 CGAGACTTGCCGCCTCTT 59.737 61.111 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.