Multiple sequence alignment - TraesCS1A01G064200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G064200 chr1A 100.000 5264 0 0 1 5264 45859022 45853759 0.000000e+00 9721.0
1 TraesCS1A01G064200 chr1A 100.000 1610 0 0 5475 7084 45853548 45851939 0.000000e+00 2974.0
2 TraesCS1A01G064200 chr1A 92.157 1275 64 14 613 1867 46296783 46295525 0.000000e+00 1768.0
3 TraesCS1A01G064200 chr1A 91.811 1209 61 17 618 1804 46202819 46201627 0.000000e+00 1650.0
4 TraesCS1A01G064200 chr1A 88.335 1003 81 15 1637 2614 46201951 46200960 0.000000e+00 1171.0
5 TraesCS1A01G064200 chr1A 88.517 836 65 10 1801 2614 46295091 46294265 0.000000e+00 983.0
6 TraesCS1A01G064200 chr1A 83.516 1092 124 27 3984 5031 46241551 46240472 0.000000e+00 968.0
7 TraesCS1A01G064200 chr1A 83.516 1092 124 28 3984 5031 46279862 46278783 0.000000e+00 968.0
8 TraesCS1A01G064200 chr1A 83.242 1092 127 25 3984 5031 46190678 46189599 0.000000e+00 952.0
9 TraesCS1A01G064200 chr1A 90.339 590 48 4 1960 2546 46309101 46308518 0.000000e+00 765.0
10 TraesCS1A01G064200 chr1A 90.169 590 49 5 1960 2546 46256794 46256211 0.000000e+00 760.0
11 TraesCS1A01G064200 chr1A 86.432 597 65 9 1000 1591 46310427 46309842 2.150000e-179 640.0
12 TraesCS1A01G064200 chr1A 96.923 260 8 0 6825 7084 432191217 432191476 3.030000e-118 436.0
13 TraesCS1A01G064200 chr1A 92.664 259 18 1 6825 7083 569341669 569341926 8.680000e-99 372.0
14 TraesCS1A01G064200 chr1A 78.339 614 88 22 4506 5091 45880766 45880170 8.740000e-94 355.0
15 TraesCS1A01G064200 chr1A 90.345 145 14 0 3038 3182 46194740 46194596 2.610000e-44 191.0
16 TraesCS1A01G064200 chr1A 90.345 145 14 0 3038 3182 46246320 46246176 2.610000e-44 191.0
17 TraesCS1A01G064200 chr1A 89.655 145 15 0 3038 3182 46283957 46283813 1.210000e-42 185.0
18 TraesCS1A01G064200 chr1A 92.982 57 2 2 5475 5529 309613138 309613194 1.640000e-11 82.4
19 TraesCS1A01G064200 chr1A 92.308 52 3 1 5475 5525 431212812 431212863 9.860000e-09 73.1
20 TraesCS1A01G064200 chr1D 97.626 2527 50 6 566 3088 46398013 46395493 0.000000e+00 4325.0
21 TraesCS1A01G064200 chr1D 93.956 1969 70 16 3107 5046 46395501 46393553 0.000000e+00 2931.0
22 TraesCS1A01G064200 chr1D 90.942 1093 60 18 613 1686 46450985 46449913 0.000000e+00 1434.0
23 TraesCS1A01G064200 chr1D 89.081 925 69 13 1712 2614 46449547 46448633 0.000000e+00 1120.0
24 TraesCS1A01G064200 chr1D 84.566 1082 110 26 3984 5031 46440449 46439391 0.000000e+00 1020.0
25 TraesCS1A01G064200 chr1D 90.678 590 48 4 1960 2546 46462567 46461982 0.000000e+00 778.0
26 TraesCS1A01G064200 chr1D 86.545 602 35 17 5655 6250 46390989 46390428 7.800000e-174 621.0
27 TraesCS1A01G064200 chr1D 82.696 549 63 13 3252 3790 46440975 46440449 6.480000e-125 459.0
28 TraesCS1A01G064200 chr1D 84.881 463 34 10 6392 6827 46389912 46389459 1.090000e-117 435.0
29 TraesCS1A01G064200 chr1D 94.964 139 5 2 12 149 46398144 46398007 4.300000e-52 217.0
30 TraesCS1A01G064200 chr1D 98.077 52 0 1 5140 5191 46392040 46391990 9.790000e-14 89.8
31 TraesCS1A01G064200 chr1B 94.874 1229 47 6 566 1787 66125072 66123853 0.000000e+00 1906.0
32 TraesCS1A01G064200 chr1B 91.667 1368 75 23 613 1961 66501108 66499761 0.000000e+00 1858.0
33 TraesCS1A01G064200 chr1B 90.751 1211 76 22 613 1804 66376761 66375568 0.000000e+00 1583.0
34 TraesCS1A01G064200 chr1B 94.483 997 41 8 1637 2623 66124163 66123171 0.000000e+00 1524.0
35 TraesCS1A01G064200 chr1B 94.613 891 41 4 3527 4412 66123172 66122284 0.000000e+00 1373.0
36 TraesCS1A01G064200 chr1B 85.693 1342 105 39 5527 6827 66121109 66119814 0.000000e+00 1334.0
37 TraesCS1A01G064200 chr1B 88.200 1000 85 15 1637 2614 66375890 66374902 0.000000e+00 1162.0
38 TraesCS1A01G064200 chr1B 93.151 730 31 6 4410 5120 66122245 66121516 0.000000e+00 1053.0
39 TraesCS1A01G064200 chr1B 83.871 1085 124 26 3984 5032 66366422 66365353 0.000000e+00 987.0
40 TraesCS1A01G064200 chr1B 90.971 731 58 5 1477 2207 66500085 66499363 0.000000e+00 977.0
41 TraesCS1A01G064200 chr1B 87.606 589 46 12 1960 2546 66513836 66513273 0.000000e+00 658.0
42 TraesCS1A01G064200 chr1B 85.476 599 57 12 4454 5031 66488776 66488187 1.320000e-166 597.0
43 TraesCS1A01G064200 chr1B 85.467 578 50 20 6178 6725 65586483 65585910 7.970000e-159 571.0
44 TraesCS1A01G064200 chr1B 87.084 511 53 6 1000 1506 66515200 66514699 3.710000e-157 566.0
45 TraesCS1A01G064200 chr1B 84.153 549 53 12 3252 3790 66489943 66489419 1.060000e-137 501.0
46 TraesCS1A01G064200 chr1B 83.060 549 60 14 3252 3790 66366947 66366422 1.080000e-127 468.0
47 TraesCS1A01G064200 chr1B 84.134 479 59 12 3984 4447 66489419 66488943 1.400000e-121 448.0
48 TraesCS1A01G064200 chr1B 77.796 617 92 23 4506 5096 66504712 66504115 8.800000e-89 339.0
49 TraesCS1A01G064200 chr1B 88.136 177 15 3 1789 1964 66124167 66123996 9.310000e-49 206.0
50 TraesCS1A01G064200 chr1B 82.573 241 33 4 1728 1964 66500305 66500070 3.350000e-48 204.0
51 TraesCS1A01G064200 chr1B 88.966 145 16 0 3038 3182 66490114 66489970 5.650000e-41 180.0
52 TraesCS1A01G064200 chr1B 91.150 113 5 3 38 149 66125174 66125066 1.590000e-31 148.0
53 TraesCS1A01G064200 chr1B 90.196 102 10 0 3081 3182 66367075 66366974 4.460000e-27 134.0
54 TraesCS1A01G064200 chr2A 97.059 408 11 1 145 551 724728542 724728949 0.000000e+00 686.0
55 TraesCS1A01G064200 chr2A 94.231 52 2 1 5475 5525 376504093 376504042 2.120000e-10 78.7
56 TraesCS1A01G064200 chr2A 94.231 52 2 1 5475 5525 577214242 577214191 2.120000e-10 78.7
57 TraesCS1A01G064200 chr5A 94.866 409 18 1 145 550 380826577 380826985 2.790000e-178 636.0
58 TraesCS1A01G064200 chr5A 95.753 259 10 1 6825 7083 284861043 284860786 3.950000e-112 416.0
59 TraesCS1A01G064200 chr5A 93.050 259 17 1 6825 7083 596587302 596587559 1.870000e-100 377.0
60 TraesCS1A01G064200 chr5A 92.045 264 20 1 6820 7083 451457875 451458137 3.120000e-98 370.0
61 TraesCS1A01G064200 chr5A 95.062 81 2 2 5186 5264 580082805 580082725 7.460000e-25 126.0
62 TraesCS1A01G064200 chr5A 96.154 52 1 1 5475 5525 655722583 655722532 4.550000e-12 84.2
63 TraesCS1A01G064200 chr5A 94.231 52 2 1 5475 5525 655793696 655793645 2.120000e-10 78.7
64 TraesCS1A01G064200 chr4D 94.146 410 22 2 145 552 509505366 509505775 2.170000e-174 623.0
65 TraesCS1A01G064200 chr7D 93.932 412 22 3 147 555 133690116 133690527 2.810000e-173 619.0
66 TraesCS1A01G064200 chr7D 93.888 409 23 2 145 552 610486824 610487231 3.630000e-172 616.0
67 TraesCS1A01G064200 chr7D 93.447 412 24 3 143 552 589511202 589510792 6.080000e-170 608.0
68 TraesCS1A01G064200 chr7D 92.326 430 25 7 148 574 207186818 207186394 7.860000e-169 604.0
69 TraesCS1A01G064200 chr6A 93.947 413 19 2 143 555 563381808 563382214 2.810000e-173 619.0
70 TraesCS1A01G064200 chr6A 95.000 80 3 1 5185 5264 162969107 162969029 2.680000e-24 124.0
71 TraesCS1A01G064200 chr6A 94.340 53 2 1 5475 5526 615779443 615779495 5.890000e-11 80.5
72 TraesCS1A01G064200 chr6A 94.231 52 2 1 5475 5525 604910389 604910440 2.120000e-10 78.7
73 TraesCS1A01G064200 chr6A 95.556 45 1 1 6435 6479 617819569 617819612 3.550000e-08 71.3
74 TraesCS1A01G064200 chr2D 93.659 410 23 3 145 552 640367720 640367312 1.690000e-170 610.0
75 TraesCS1A01G064200 chr4A 93.050 259 17 1 6825 7083 170117715 170117972 1.870000e-100 377.0
76 TraesCS1A01G064200 chr4A 94.231 52 2 1 5475 5525 229673949 229673898 2.120000e-10 78.7
77 TraesCS1A01G064200 chr4A 100.000 28 0 0 6448 6475 683916766 683916739 1.300000e-02 52.8
78 TraesCS1A01G064200 chr5B 92.692 260 18 1 6824 7083 546872771 546872513 2.410000e-99 374.0
79 TraesCS1A01G064200 chr7B 92.366 262 19 1 6822 7083 196712799 196713059 8.680000e-99 372.0
80 TraesCS1A01G064200 chr7B 95.349 43 2 0 5799 5841 711440564 711440606 1.280000e-07 69.4
81 TraesCS1A01G064200 chr6D 92.045 264 20 1 6820 7083 448337920 448338182 3.120000e-98 370.0
82 TraesCS1A01G064200 chr7A 97.368 76 2 0 5189 5264 172916035 172915960 5.770000e-26 130.0
83 TraesCS1A01G064200 chr7A 96.250 80 2 1 5186 5264 210129241 210129162 5.770000e-26 130.0
84 TraesCS1A01G064200 chr7A 97.368 76 2 0 5189 5264 712463680 712463605 5.770000e-26 130.0
85 TraesCS1A01G064200 chr3A 97.368 76 2 0 5189 5264 184272626 184272551 5.770000e-26 130.0
86 TraesCS1A01G064200 chr3A 97.368 76 2 0 5189 5264 378490631 378490706 5.770000e-26 130.0
87 TraesCS1A01G064200 chr3A 96.250 80 2 1 5186 5264 616398679 616398600 5.770000e-26 130.0
88 TraesCS1A01G064200 chr5D 97.333 75 2 0 5190 5264 537643099 537643173 2.070000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G064200 chr1A 45851939 45859022 7083 True 6347.500000 9721 100.000000 1 7084 2 chr1A.!!$R5 7083
1 TraesCS1A01G064200 chr1A 46200960 46202819 1859 True 1410.500000 1650 90.073000 618 2614 2 chr1A.!!$R7 1996
2 TraesCS1A01G064200 chr1A 46294265 46296783 2518 True 1375.500000 1768 90.337000 613 2614 2 chr1A.!!$R9 2001
3 TraesCS1A01G064200 chr1A 46240472 46241551 1079 True 968.000000 968 83.516000 3984 5031 1 chr1A.!!$R2 1047
4 TraesCS1A01G064200 chr1A 46256211 46256794 583 True 760.000000 760 90.169000 1960 2546 1 chr1A.!!$R4 586
5 TraesCS1A01G064200 chr1A 46308518 46310427 1909 True 702.500000 765 88.385500 1000 2546 2 chr1A.!!$R10 1546
6 TraesCS1A01G064200 chr1A 46278783 46283957 5174 True 576.500000 968 86.585500 3038 5031 2 chr1A.!!$R8 1993
7 TraesCS1A01G064200 chr1A 46189599 46194740 5141 True 571.500000 952 86.793500 3038 5031 2 chr1A.!!$R6 1993
8 TraesCS1A01G064200 chr1A 45880170 45880766 596 True 355.000000 355 78.339000 4506 5091 1 chr1A.!!$R1 585
9 TraesCS1A01G064200 chr1D 46389459 46398144 8685 True 1436.466667 4325 92.674833 12 6827 6 chr1D.!!$R2 6815
10 TraesCS1A01G064200 chr1D 46448633 46450985 2352 True 1277.000000 1434 90.011500 613 2614 2 chr1D.!!$R4 2001
11 TraesCS1A01G064200 chr1D 46461982 46462567 585 True 778.000000 778 90.678000 1960 2546 1 chr1D.!!$R1 586
12 TraesCS1A01G064200 chr1D 46439391 46440975 1584 True 739.500000 1020 83.631000 3252 5031 2 chr1D.!!$R3 1779
13 TraesCS1A01G064200 chr1B 66374902 66376761 1859 True 1372.500000 1583 89.475500 613 2614 2 chr1B.!!$R4 2001
14 TraesCS1A01G064200 chr1B 66119814 66125174 5360 True 1077.714286 1906 91.728571 38 6827 7 chr1B.!!$R2 6789
15 TraesCS1A01G064200 chr1B 66499363 66504712 5349 True 844.500000 1858 85.751750 613 5096 4 chr1B.!!$R6 4483
16 TraesCS1A01G064200 chr1B 66513273 66515200 1927 True 612.000000 658 87.345000 1000 2546 2 chr1B.!!$R7 1546
17 TraesCS1A01G064200 chr1B 65585910 65586483 573 True 571.000000 571 85.467000 6178 6725 1 chr1B.!!$R1 547
18 TraesCS1A01G064200 chr1B 66365353 66367075 1722 True 529.666667 987 85.709000 3081 5032 3 chr1B.!!$R3 1951
19 TraesCS1A01G064200 chr1B 66488187 66490114 1927 True 431.500000 597 85.682250 3038 5031 4 chr1B.!!$R5 1993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.0 0.00 0.0 0.00 4.63 F
532 533 0.035056 AAGGCCTTCATGGAGTTCGG 60.035 55.0 13.78 0.0 38.35 4.30 F
1490 4514 0.246635 GCAAGCTCGGTAAGACTGGA 59.753 55.0 0.00 0.0 0.00 3.86 F
2221 7425 1.946984 ATCAGTCCACCTCCCGTTTA 58.053 50.0 0.00 0.0 0.00 2.01 F
3627 8865 0.810648 GATGGCGCAATGTCTTTCCA 59.189 50.0 10.83 0.0 0.00 3.53 F
5191 15528 0.107410 GTTGGGCCGTGACATATGGA 60.107 55.0 7.80 0.0 37.69 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 7425 0.107017 ACTTATCCAGCAATGCCGCT 60.107 50.000 0.00 0.00 45.21 5.52 R
2267 7471 5.455056 AGTGACGATGACTTTCTTACTGT 57.545 39.130 0.00 0.00 0.00 3.55 R
3211 8429 1.132881 TCAATTTGTGAAAGGGGGCCT 60.133 47.619 0.84 0.00 31.51 5.19 R
3632 8870 0.251165 GCAACTTGGCTTGGGGACTA 60.251 55.000 0.00 0.00 0.00 2.59 R
5244 15581 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41 R
6830 18478 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.263949 ACCCTCTAAATATGGGGCATTAGC 60.264 45.833 0.00 0.00 44.97 3.09
159 160 4.713792 AGATAGGAGTAGGGCATTTTGG 57.286 45.455 0.00 0.00 0.00 3.28
160 161 4.307259 AGATAGGAGTAGGGCATTTTGGA 58.693 43.478 0.00 0.00 0.00 3.53
161 162 4.349342 AGATAGGAGTAGGGCATTTTGGAG 59.651 45.833 0.00 0.00 0.00 3.86
162 163 2.562296 AGGAGTAGGGCATTTTGGAGA 58.438 47.619 0.00 0.00 0.00 3.71
164 165 2.644676 GAGTAGGGCATTTTGGAGACC 58.355 52.381 0.00 0.00 0.00 3.85
165 166 1.065418 AGTAGGGCATTTTGGAGACCG 60.065 52.381 0.00 0.00 0.00 4.79
166 167 1.065709 GTAGGGCATTTTGGAGACCGA 60.066 52.381 0.00 0.00 0.00 4.69
167 168 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.000 0.00 0.00 0.00 4.63
168 169 1.657751 GGGCATTTTGGAGACCGAGC 61.658 60.000 0.00 0.00 0.00 5.03
169 170 0.678048 GGCATTTTGGAGACCGAGCT 60.678 55.000 0.00 0.00 0.00 4.09
170 171 0.729690 GCATTTTGGAGACCGAGCTC 59.270 55.000 2.73 2.73 0.00 4.09
176 177 3.941081 GAGACCGAGCTCCATGGA 58.059 61.111 15.27 15.27 0.00 3.41
189 190 4.660789 CTCCATGGAGCCCTTTATTTTG 57.339 45.455 28.45 1.40 35.31 2.44
192 193 5.090139 TCCATGGAGCCCTTTATTTTGAAA 58.910 37.500 11.44 0.00 0.00 2.69
193 194 5.545723 TCCATGGAGCCCTTTATTTTGAAAA 59.454 36.000 11.44 0.00 0.00 2.29
194 195 6.043706 TCCATGGAGCCCTTTATTTTGAAAAA 59.956 34.615 11.44 0.00 0.00 1.94
195 196 6.885918 CCATGGAGCCCTTTATTTTGAAAAAT 59.114 34.615 5.56 6.29 41.24 1.82
196 197 7.394077 CCATGGAGCCCTTTATTTTGAAAAATT 59.606 33.333 5.56 0.00 39.24 1.82
197 198 7.977789 TGGAGCCCTTTATTTTGAAAAATTC 57.022 32.000 6.34 0.00 39.24 2.17
198 199 7.512992 TGGAGCCCTTTATTTTGAAAAATTCA 58.487 30.769 6.34 0.00 39.24 2.57
259 260 8.978874 AAATTAGACATGTATGCAAGGATGTA 57.021 30.769 2.50 0.00 0.00 2.29
266 267 7.109501 ACATGTATGCAAGGATGTAAAGTGTA 58.890 34.615 0.00 0.00 0.00 2.90
267 268 7.775093 ACATGTATGCAAGGATGTAAAGTGTAT 59.225 33.333 0.00 0.00 0.00 2.29
268 269 7.552458 TGTATGCAAGGATGTAAAGTGTATG 57.448 36.000 0.00 0.00 0.00 2.39
269 270 7.109501 TGTATGCAAGGATGTAAAGTGTATGT 58.890 34.615 0.00 0.00 0.00 2.29
272 273 7.552458 TGCAAGGATGTAAAGTGTATGTATG 57.448 36.000 0.00 0.00 0.00 2.39
273 274 7.334858 TGCAAGGATGTAAAGTGTATGTATGA 58.665 34.615 0.00 0.00 0.00 2.15
275 276 8.673711 GCAAGGATGTAAAGTGTATGTATGAAA 58.326 33.333 0.00 0.00 0.00 2.69
303 304 9.822185 ATTTTAGGATGAAATACCTTGAATTGC 57.178 29.630 0.00 0.00 37.68 3.56
304 305 5.505173 AGGATGAAATACCTTGAATTGCG 57.495 39.130 0.00 0.00 31.95 4.85
305 306 5.192927 AGGATGAAATACCTTGAATTGCGA 58.807 37.500 0.00 0.00 31.95 5.10
307 308 4.355543 TGAAATACCTTGAATTGCGAGC 57.644 40.909 0.00 0.00 0.00 5.03
308 309 4.009675 TGAAATACCTTGAATTGCGAGCT 58.990 39.130 0.00 0.00 0.00 4.09
309 310 4.142622 TGAAATACCTTGAATTGCGAGCTG 60.143 41.667 0.00 0.00 0.00 4.24
310 311 1.086696 TACCTTGAATTGCGAGCTGC 58.913 50.000 0.00 0.00 46.70 5.25
345 346 9.696917 ACAAAATCATGGACTTTAAAGATGAAC 57.303 29.630 21.92 7.20 0.00 3.18
346 347 9.695526 CAAAATCATGGACTTTAAAGATGAACA 57.304 29.630 21.92 12.00 0.00 3.18
347 348 9.918630 AAAATCATGGACTTTAAAGATGAACAG 57.081 29.630 21.92 5.57 0.00 3.16
348 349 8.641498 AATCATGGACTTTAAAGATGAACAGT 57.359 30.769 21.92 3.41 0.00 3.55
349 350 9.739276 AATCATGGACTTTAAAGATGAACAGTA 57.261 29.630 21.92 5.83 0.00 2.74
350 351 8.547967 TCATGGACTTTAAAGATGAACAGTAC 57.452 34.615 21.92 0.00 0.00 2.73
351 352 8.154203 TCATGGACTTTAAAGATGAACAGTACA 58.846 33.333 21.92 4.66 29.71 2.90
356 357 9.922305 GACTTTAAAGATGAACAGTACATATGC 57.078 33.333 21.92 0.00 0.00 3.14
364 365 8.616076 AGATGAACAGTACATATGCTAAAAAGC 58.384 33.333 1.58 0.00 0.00 3.51
365 366 7.083875 TGAACAGTACATATGCTAAAAAGCC 57.916 36.000 1.58 0.00 0.00 4.35
367 368 6.927294 ACAGTACATATGCTAAAAAGCCTC 57.073 37.500 1.58 0.00 0.00 4.70
368 369 6.414732 ACAGTACATATGCTAAAAAGCCTCA 58.585 36.000 1.58 0.00 0.00 3.86
370 371 6.763135 CAGTACATATGCTAAAAAGCCTCAGA 59.237 38.462 1.58 0.00 0.00 3.27
371 372 7.443575 CAGTACATATGCTAAAAAGCCTCAGAT 59.556 37.037 1.58 0.00 0.00 2.90
372 373 7.995488 AGTACATATGCTAAAAAGCCTCAGATT 59.005 33.333 1.58 0.00 0.00 2.40
375 376 5.990120 ATGCTAAAAAGCCTCAGATTTGT 57.010 34.783 0.00 0.00 30.45 2.83
376 377 5.376854 TGCTAAAAAGCCTCAGATTTGTC 57.623 39.130 0.00 0.00 30.45 3.18
377 378 5.072741 TGCTAAAAAGCCTCAGATTTGTCT 58.927 37.500 0.00 0.00 30.45 3.41
378 379 5.536161 TGCTAAAAAGCCTCAGATTTGTCTT 59.464 36.000 0.00 0.00 30.45 3.01
381 382 7.439356 GCTAAAAAGCCTCAGATTTGTCTTTTT 59.561 33.333 19.16 19.16 39.51 1.94
410 411 9.438228 TGTACCTCACATTTTATTGTATTTCGA 57.562 29.630 0.00 0.00 30.04 3.71
426 427 8.858003 TGTATTTCGAACTAAAAATTTGCACA 57.142 26.923 0.00 0.00 0.00 4.57
429 430 4.911053 TCGAACTAAAAATTTGCACACGT 58.089 34.783 0.00 0.00 0.00 4.49
430 431 4.731000 TCGAACTAAAAATTTGCACACGTG 59.269 37.500 15.48 15.48 0.00 4.49
431 432 4.497608 CGAACTAAAAATTTGCACACGTGT 59.502 37.500 17.22 17.22 0.00 4.49
432 433 5.677612 CGAACTAAAAATTTGCACACGTGTA 59.322 36.000 22.90 6.04 0.00 2.90
433 434 6.343616 CGAACTAAAAATTTGCACACGTGTAC 60.344 38.462 22.90 17.23 0.00 2.90
434 435 5.881447 ACTAAAAATTTGCACACGTGTACA 58.119 33.333 22.90 20.07 0.00 2.90
435 436 6.500041 ACTAAAAATTTGCACACGTGTACAT 58.500 32.000 22.90 8.26 0.00 2.29
436 437 6.975772 ACTAAAAATTTGCACACGTGTACATT 59.024 30.769 22.90 14.56 29.14 2.71
437 438 8.129840 ACTAAAAATTTGCACACGTGTACATTA 58.870 29.630 22.90 14.90 28.21 1.90
438 439 7.938563 AAAAATTTGCACACGTGTACATTAT 57.061 28.000 22.90 14.89 28.21 1.28
439 440 6.926280 AAATTTGCACACGTGTACATTATG 57.074 33.333 22.90 8.35 28.21 1.90
441 442 6.729391 ATTTGCACACGTGTACATTATGTA 57.271 33.333 22.90 2.45 0.00 2.29
443 444 5.959652 TGCACACGTGTACATTATGTATC 57.040 39.130 22.90 4.75 35.05 2.24
444 445 5.656480 TGCACACGTGTACATTATGTATCT 58.344 37.500 22.90 0.00 35.05 1.98
445 446 6.797454 TGCACACGTGTACATTATGTATCTA 58.203 36.000 22.90 0.00 35.05 1.98
447 448 6.362551 GCACACGTGTACATTATGTATCTAGG 59.637 42.308 22.90 3.55 35.05 3.02
448 449 7.423199 CACACGTGTACATTATGTATCTAGGT 58.577 38.462 22.90 7.34 35.05 3.08
449 450 8.562052 CACACGTGTACATTATGTATCTAGGTA 58.438 37.037 22.90 0.00 35.05 3.08
450 451 9.293404 ACACGTGTACATTATGTATCTAGGTAT 57.707 33.333 21.98 0.00 35.05 2.73
519 520 8.938801 ATTTTGAAATTTCCAAATAAAGGCCT 57.061 26.923 22.21 0.00 32.68 5.19
521 522 7.977789 TTGAAATTTCCAAATAAAGGCCTTC 57.022 32.000 20.79 0.85 0.00 3.46
522 523 7.072263 TGAAATTTCCAAATAAAGGCCTTCA 57.928 32.000 20.79 3.87 0.00 3.02
523 524 7.688343 TGAAATTTCCAAATAAAGGCCTTCAT 58.312 30.769 20.79 6.96 0.00 2.57
525 526 5.419239 TTTCCAAATAAAGGCCTTCATGG 57.581 39.130 20.79 22.30 39.35 3.66
526 527 4.329638 TCCAAATAAAGGCCTTCATGGA 57.670 40.909 25.74 25.74 38.35 3.41
527 528 4.280819 TCCAAATAAAGGCCTTCATGGAG 58.719 43.478 25.74 13.89 38.35 3.86
530 531 5.394553 CCAAATAAAGGCCTTCATGGAGTTC 60.395 44.000 20.79 0.00 38.35 3.01
531 532 1.826385 AAAGGCCTTCATGGAGTTCG 58.174 50.000 20.79 0.00 38.35 3.95
532 533 0.035056 AAGGCCTTCATGGAGTTCGG 60.035 55.000 13.78 0.00 38.35 4.30
533 534 1.201429 AGGCCTTCATGGAGTTCGGT 61.201 55.000 0.00 0.00 38.35 4.69
535 536 0.250513 GCCTTCATGGAGTTCGGTCT 59.749 55.000 0.00 0.00 38.35 3.85
536 537 1.740718 GCCTTCATGGAGTTCGGTCTC 60.741 57.143 0.00 0.37 38.35 3.36
547 548 3.981308 CGGTCTCCGTTTGGCATT 58.019 55.556 0.00 0.00 42.73 3.56
549 550 0.596082 CGGTCTCCGTTTGGCATTTT 59.404 50.000 0.00 0.00 42.73 1.82
550 551 1.401018 CGGTCTCCGTTTGGCATTTTC 60.401 52.381 0.00 0.00 42.73 2.29
551 552 1.401018 GGTCTCCGTTTGGCATTTTCG 60.401 52.381 0.00 0.00 34.14 3.46
552 553 1.265905 GTCTCCGTTTGGCATTTTCGT 59.734 47.619 0.00 0.00 34.14 3.85
553 554 2.481185 GTCTCCGTTTGGCATTTTCGTA 59.519 45.455 0.00 0.00 34.14 3.43
555 556 4.330620 GTCTCCGTTTGGCATTTTCGTATA 59.669 41.667 0.00 0.00 34.14 1.47
556 557 4.330620 TCTCCGTTTGGCATTTTCGTATAC 59.669 41.667 0.00 0.00 34.14 1.47
557 558 3.062369 TCCGTTTGGCATTTTCGTATACG 59.938 43.478 19.23 19.23 36.42 3.06
559 560 4.032672 CCGTTTGGCATTTTCGTATACGTA 59.967 41.667 23.67 12.82 40.80 3.57
560 561 5.185341 CGTTTGGCATTTTCGTATACGTAG 58.815 41.667 23.67 11.68 40.80 3.51
562 563 4.652421 TGGCATTTTCGTATACGTAGGA 57.348 40.909 23.67 8.52 40.80 2.94
564 565 4.098349 TGGCATTTTCGTATACGTAGGAGT 59.902 41.667 23.67 5.22 40.80 3.85
565 566 4.443394 GGCATTTTCGTATACGTAGGAGTG 59.557 45.833 23.67 16.12 40.80 3.51
578 579 4.019860 ACGTAGGAGTGAGAGTACCAACTA 60.020 45.833 0.00 0.00 35.56 2.24
580 581 5.589452 CGTAGGAGTGAGAGTACCAACTATT 59.411 44.000 0.00 0.00 35.56 1.73
586 587 8.092687 GGAGTGAGAGTACCAACTATTTTTACA 58.907 37.037 0.00 0.00 35.56 2.41
587 588 8.828688 AGTGAGAGTACCAACTATTTTTACAC 57.171 34.615 0.00 0.00 35.56 2.90
588 589 8.426489 AGTGAGAGTACCAACTATTTTTACACA 58.574 33.333 0.00 0.00 35.56 3.72
589 590 8.709646 GTGAGAGTACCAACTATTTTTACACAG 58.290 37.037 0.00 0.00 35.56 3.66
590 591 8.644216 TGAGAGTACCAACTATTTTTACACAGA 58.356 33.333 0.00 0.00 35.56 3.41
591 592 9.141400 GAGAGTACCAACTATTTTTACACAGAG 57.859 37.037 0.00 0.00 35.56 3.35
593 594 9.918630 GAGTACCAACTATTTTTACACAGAGTA 57.081 33.333 0.00 0.00 35.56 2.59
596 597 7.511268 ACCAACTATTTTTACACAGAGTACCA 58.489 34.615 0.00 0.00 30.91 3.25
597 598 7.994334 ACCAACTATTTTTACACAGAGTACCAA 59.006 33.333 0.00 0.00 30.91 3.67
598 599 8.287503 CCAACTATTTTTACACAGAGTACCAAC 58.712 37.037 0.00 0.00 30.91 3.77
600 601 8.603242 ACTATTTTTACACAGAGTACCAACTG 57.397 34.615 9.68 9.68 35.56 3.16
601 602 8.208903 ACTATTTTTACACAGAGTACCAACTGT 58.791 33.333 10.72 10.72 46.32 3.55
602 603 6.913873 TTTTTACACAGAGTACCAACTGTC 57.086 37.500 12.78 0.00 44.07 3.51
604 605 5.864418 TTACACAGAGTACCAACTGTCTT 57.136 39.130 12.78 7.64 44.07 3.01
605 606 4.755266 ACACAGAGTACCAACTGTCTTT 57.245 40.909 12.78 1.94 44.07 2.52
606 607 5.099042 ACACAGAGTACCAACTGTCTTTT 57.901 39.130 12.78 0.11 44.07 2.27
607 608 5.116882 ACACAGAGTACCAACTGTCTTTTC 58.883 41.667 12.78 0.00 44.07 2.29
609 610 5.006746 CACAGAGTACCAACTGTCTTTTCAC 59.993 44.000 12.78 0.00 44.07 3.18
610 611 5.116180 CAGAGTACCAACTGTCTTTTCACA 58.884 41.667 0.00 0.00 35.56 3.58
616 617 5.116882 ACCAACTGTCTTTTCACAGAGTAC 58.883 41.667 7.59 0.00 45.92 2.73
620 3615 7.604164 CCAACTGTCTTTTCACAGAGTACATAT 59.396 37.037 7.59 0.00 45.92 1.78
890 3896 8.814038 AGGCATTAAAGTCTCAATTAACATCT 57.186 30.769 0.00 0.00 0.00 2.90
998 4018 7.575505 ACTAGCAACTCTTCTATACACTCCTA 58.424 38.462 0.00 0.00 0.00 2.94
1378 4398 7.785028 TCTGTTATGAGGCCTTAGAAGATCTTA 59.215 37.037 6.77 0.00 0.00 2.10
1417 4437 5.879237 TGAATTTTGTCCGTAATCAGATGC 58.121 37.500 0.00 0.00 0.00 3.91
1490 4514 0.246635 GCAAGCTCGGTAAGACTGGA 59.753 55.000 0.00 0.00 0.00 3.86
1589 5169 3.767711 TGCAGATGACGGATCTATACCT 58.232 45.455 0.00 0.00 39.64 3.08
1726 5306 9.793252 GTTTGTGATTTGCTTTATCATCTATGT 57.207 29.630 0.00 0.00 34.75 2.29
2058 7241 4.263506 ACACCTTCTTACCAAGATCAAGGG 60.264 45.833 8.16 2.56 35.44 3.95
2221 7425 1.946984 ATCAGTCCACCTCCCGTTTA 58.053 50.000 0.00 0.00 0.00 2.01
2267 7471 9.147732 TGAGCTTAAGAGAGAACCATAATGATA 57.852 33.333 6.67 0.00 0.00 2.15
2330 7534 9.308000 TGTCCATTCAGTTATTTTCCAATAAGT 57.692 29.630 0.00 0.00 38.55 2.24
2647 7864 8.630054 TGCTGGTAATAAACAGTGTAAATTCT 57.370 30.769 0.00 0.00 37.07 2.40
2706 7923 7.241376 GTGGTTTGTGTTCTAAGAATATTCCG 58.759 38.462 11.92 1.68 0.00 4.30
2729 7946 4.437682 AGGAGTTTGTGGTGAAAGATGA 57.562 40.909 0.00 0.00 0.00 2.92
2889 8107 3.510388 TCACCTCAACATGATCGACTC 57.490 47.619 0.00 0.00 0.00 3.36
2906 8124 2.216750 CTCCCAATGCTTTGCACCCG 62.217 60.000 6.81 0.00 43.04 5.28
2963 8181 4.023279 TGCGCAAAATGACACTAGATTTGT 60.023 37.500 8.16 0.00 34.37 2.83
3013 8231 2.093553 CCACGGATTGCAAATTTCCCAT 60.094 45.455 1.71 0.00 0.00 4.00
3079 8297 7.601073 TCTGTTGATGTTGATCACAGAATAC 57.399 36.000 7.31 0.00 40.24 1.89
3211 8429 6.431543 TGAATAATAAAAGTTTCGGCCACTCA 59.568 34.615 2.24 0.00 0.00 3.41
3241 8460 6.239120 CCCTTTCACAAATTGAGACAAGTCAT 60.239 38.462 0.00 0.00 34.94 3.06
3279 8498 1.429930 TCAGCTGTCCACACCCTTTA 58.570 50.000 14.67 0.00 0.00 1.85
3280 8499 1.771854 TCAGCTGTCCACACCCTTTAA 59.228 47.619 14.67 0.00 0.00 1.52
3281 8500 2.375174 TCAGCTGTCCACACCCTTTAAT 59.625 45.455 14.67 0.00 0.00 1.40
3282 8501 3.157087 CAGCTGTCCACACCCTTTAATT 58.843 45.455 5.25 0.00 0.00 1.40
3371 8599 9.179909 TCATTAACTAAACACTTTTTGGAGTCA 57.820 29.630 0.00 0.00 0.00 3.41
3394 8622 2.034305 GTCGAGCGGAATATACCAGTGT 59.966 50.000 0.00 0.00 0.00 3.55
3479 8708 2.165437 GTGTCTTGCAAACTGACCCAAA 59.835 45.455 13.07 0.00 0.00 3.28
3627 8865 0.810648 GATGGCGCAATGTCTTTCCA 59.189 50.000 10.83 0.00 0.00 3.53
3632 8870 2.610232 GGCGCAATGTCTTTCCATTTGT 60.610 45.455 10.83 0.00 32.81 2.83
3633 8871 3.366883 GGCGCAATGTCTTTCCATTTGTA 60.367 43.478 10.83 0.00 32.81 2.41
3635 8873 4.615912 GCGCAATGTCTTTCCATTTGTAGT 60.616 41.667 0.30 0.00 32.81 2.73
3692 12318 4.835284 TTACCATGTCCAATAGTGCTCA 57.165 40.909 0.00 0.00 0.00 4.26
3839 12469 3.361158 CAACGATGCCAACCCGCA 61.361 61.111 0.00 0.00 44.35 5.69
3969 12599 4.864704 TGATTCCTTTAGGCAAAACCAC 57.135 40.909 0.00 0.00 43.14 4.16
4021 12653 1.063469 GGACCGATAACCATGCGTTTG 59.937 52.381 5.12 0.00 35.79 2.93
4065 12697 8.889849 AGTTAATTAATACGTTTGCACATGAC 57.110 30.769 0.00 0.00 0.00 3.06
4142 12774 2.827921 GGGAATTGAGTGCAAATGTCCT 59.172 45.455 0.00 0.00 37.59 3.85
4310 12953 1.739035 CGCCGTGAAGTCCACATACAT 60.739 52.381 0.00 0.00 45.98 2.29
4337 12980 0.611200 TGTGAAGACATACACCCGGG 59.389 55.000 22.25 22.25 36.35 5.73
4358 13001 1.649664 CTCTCATTCTGTGAAGGCGG 58.350 55.000 0.00 0.00 36.14 6.13
4608 13463 5.606348 AGAAATAAGTGTAGAGGAGCCAG 57.394 43.478 0.00 0.00 0.00 4.85
4847 13736 6.975197 TCGAATAGAATCTGCACTTGTAAGAG 59.025 38.462 0.00 0.00 0.00 2.85
4864 13763 8.932945 TTGTAAGAGTTCTTGTGCATATCTAG 57.067 34.615 4.67 0.00 37.40 2.43
4880 13782 6.261826 GCATATCTAGTTCTTGTGCTTTCCAT 59.738 38.462 0.00 0.00 0.00 3.41
4894 13796 7.761409 TGTGCTTTCCATCTTATTACACATTC 58.239 34.615 0.00 0.00 31.11 2.67
5046 13955 7.267600 CGTTCCTCGAATGTTTTTGTAATGTAC 59.732 37.037 0.00 0.00 42.86 2.90
5096 14006 6.809630 ATGGTAAGCTCTGTTTTTCTCTTC 57.190 37.500 0.00 0.00 0.00 2.87
5126 15463 2.459969 TTCAACCTCCCTGCCAGCA 61.460 57.895 0.00 0.00 0.00 4.41
5135 15472 2.341176 CTGCCAGCAAGCAAACCC 59.659 61.111 2.13 0.00 43.52 4.11
5138 15475 2.912025 CCAGCAAGCAAACCCGGT 60.912 61.111 0.00 0.00 0.00 5.28
5191 15528 0.107410 GTTGGGCCGTGACATATGGA 60.107 55.000 7.80 0.00 37.69 3.41
5192 15529 0.621082 TTGGGCCGTGACATATGGAA 59.379 50.000 7.80 0.00 37.69 3.53
5194 15531 1.004862 TGGGCCGTGACATATGGAAAA 59.995 47.619 7.80 0.00 37.69 2.29
5195 15532 2.096248 GGGCCGTGACATATGGAAAAA 58.904 47.619 7.80 0.00 37.69 1.94
5219 15556 7.553881 AAATTATATGAGACCAGGTTTCACG 57.446 36.000 15.02 0.00 29.72 4.35
5220 15557 3.543680 ATATGAGACCAGGTTTCACGG 57.456 47.619 15.02 0.00 29.72 4.94
5221 15558 1.056660 ATGAGACCAGGTTTCACGGT 58.943 50.000 15.02 0.00 29.72 4.83
5222 15559 0.834612 TGAGACCAGGTTTCACGGTT 59.165 50.000 8.81 0.00 31.63 4.44
5223 15560 2.040939 TGAGACCAGGTTTCACGGTTA 58.959 47.619 8.81 0.00 31.63 2.85
5224 15561 2.036733 TGAGACCAGGTTTCACGGTTAG 59.963 50.000 8.81 0.00 31.63 2.34
5225 15562 2.036862 GAGACCAGGTTTCACGGTTAGT 59.963 50.000 5.20 0.00 31.63 2.24
5226 15563 3.233507 AGACCAGGTTTCACGGTTAGTA 58.766 45.455 0.00 0.00 31.63 1.82
5227 15564 3.257624 AGACCAGGTTTCACGGTTAGTAG 59.742 47.826 0.00 0.00 31.63 2.57
5228 15565 2.301009 ACCAGGTTTCACGGTTAGTAGG 59.699 50.000 0.00 0.00 0.00 3.18
5229 15566 2.301009 CCAGGTTTCACGGTTAGTAGGT 59.699 50.000 0.00 0.00 0.00 3.08
5230 15567 3.323243 CAGGTTTCACGGTTAGTAGGTG 58.677 50.000 0.00 0.00 0.00 4.00
5231 15568 3.006110 CAGGTTTCACGGTTAGTAGGTGA 59.994 47.826 0.00 0.00 38.80 4.02
5232 15569 3.257624 AGGTTTCACGGTTAGTAGGTGAG 59.742 47.826 0.00 0.00 41.27 3.51
5233 15570 3.256631 GGTTTCACGGTTAGTAGGTGAGA 59.743 47.826 0.00 0.00 41.27 3.27
5234 15571 4.233005 GTTTCACGGTTAGTAGGTGAGAC 58.767 47.826 0.00 0.00 41.27 3.36
5235 15572 2.440409 TCACGGTTAGTAGGTGAGACC 58.560 52.381 0.00 0.00 35.89 3.85
5236 15573 1.475682 CACGGTTAGTAGGTGAGACCC 59.524 57.143 0.00 0.00 39.75 4.46
5237 15574 0.737219 CGGTTAGTAGGTGAGACCCG 59.263 60.000 0.00 0.00 39.75 5.28
5238 15575 1.844687 GGTTAGTAGGTGAGACCCGT 58.155 55.000 0.00 0.00 39.75 5.28
5239 15576 1.747924 GGTTAGTAGGTGAGACCCGTC 59.252 57.143 0.00 0.00 39.75 4.79
5240 15577 1.747924 GTTAGTAGGTGAGACCCGTCC 59.252 57.143 0.00 0.00 39.75 4.79
5241 15578 1.293062 TAGTAGGTGAGACCCGTCCT 58.707 55.000 0.00 0.00 39.75 3.85
5242 15579 0.323542 AGTAGGTGAGACCCGTCCTG 60.324 60.000 0.00 0.00 39.75 3.86
5243 15580 0.323178 GTAGGTGAGACCCGTCCTGA 60.323 60.000 0.00 0.00 39.75 3.86
5244 15581 0.629596 TAGGTGAGACCCGTCCTGAT 59.370 55.000 0.00 0.00 39.75 2.90
5245 15582 0.972983 AGGTGAGACCCGTCCTGATG 60.973 60.000 0.00 0.00 39.75 3.07
5246 15583 1.517832 GTGAGACCCGTCCTGATGG 59.482 63.158 0.00 0.00 37.23 3.51
5247 15584 0.970937 GTGAGACCCGTCCTGATGGA 60.971 60.000 6.98 0.00 39.90 3.41
5248 15585 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.000 6.98 0.00 45.29 3.41
5249 15586 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
5256 15593 1.645034 GTCCTGATGGATGACACGTG 58.355 55.000 15.48 15.48 45.29 4.49
5257 15594 0.536724 TCCTGATGGATGACACGTGG 59.463 55.000 21.57 1.66 37.46 4.94
5258 15595 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
5259 15596 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
5261 15598 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
5262 15599 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
5263 15600 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
5495 15832 3.583806 CATTCATCAGGATAGGTCTCGC 58.416 50.000 0.00 0.00 0.00 5.03
5496 15833 1.239347 TCATCAGGATAGGTCTCGCG 58.761 55.000 0.00 0.00 0.00 5.87
5497 15834 0.955178 CATCAGGATAGGTCTCGCGT 59.045 55.000 5.77 0.00 0.00 6.01
5498 15835 0.955178 ATCAGGATAGGTCTCGCGTG 59.045 55.000 5.77 3.13 0.00 5.34
5499 15836 0.107361 TCAGGATAGGTCTCGCGTGA 60.107 55.000 5.77 6.33 0.00 4.35
5500 15837 0.309302 CAGGATAGGTCTCGCGTGAG 59.691 60.000 19.99 19.99 43.99 3.51
5507 15844 4.320910 TCTCGCGTGAGACCTGAT 57.679 55.556 24.28 0.00 46.25 2.90
5508 15845 2.099143 TCTCGCGTGAGACCTGATC 58.901 57.895 24.28 0.00 46.25 2.92
5509 15846 0.393132 TCTCGCGTGAGACCTGATCT 60.393 55.000 24.28 0.00 46.25 2.75
5568 15905 3.591023 GTCGCTCCTTCTTCTTTTAGCT 58.409 45.455 0.00 0.00 0.00 3.32
5570 15907 4.092237 GTCGCTCCTTCTTCTTTTAGCTTC 59.908 45.833 0.00 0.00 0.00 3.86
5571 15908 4.021016 TCGCTCCTTCTTCTTTTAGCTTCT 60.021 41.667 0.00 0.00 0.00 2.85
5572 15909 4.693095 CGCTCCTTCTTCTTTTAGCTTCTT 59.307 41.667 0.00 0.00 0.00 2.52
5573 15910 5.163903 CGCTCCTTCTTCTTTTAGCTTCTTC 60.164 44.000 0.00 0.00 0.00 2.87
5574 15911 5.937540 GCTCCTTCTTCTTTTAGCTTCTTCT 59.062 40.000 0.00 0.00 0.00 2.85
5575 15912 6.092122 GCTCCTTCTTCTTTTAGCTTCTTCTC 59.908 42.308 0.00 0.00 0.00 2.87
5576 15913 7.309770 TCCTTCTTCTTTTAGCTTCTTCTCT 57.690 36.000 0.00 0.00 0.00 3.10
5577 15914 7.740805 TCCTTCTTCTTTTAGCTTCTTCTCTT 58.259 34.615 0.00 0.00 0.00 2.85
5578 15915 7.875554 TCCTTCTTCTTTTAGCTTCTTCTCTTC 59.124 37.037 0.00 0.00 0.00 2.87
5579 15916 7.877612 CCTTCTTCTTTTAGCTTCTTCTCTTCT 59.122 37.037 0.00 0.00 0.00 2.85
5580 15917 9.271828 CTTCTTCTTTTAGCTTCTTCTCTTCTT 57.728 33.333 0.00 0.00 0.00 2.52
5581 15918 8.825667 TCTTCTTTTAGCTTCTTCTCTTCTTC 57.174 34.615 0.00 0.00 0.00 2.87
5651 15990 7.371936 ACGGCTACAAATTATAACAAGCAAAA 58.628 30.769 0.00 0.00 0.00 2.44
5670 16899 0.390340 ACTGCTAGCCACACATGACG 60.390 55.000 13.29 0.00 0.00 4.35
5733 16962 5.720202 AGGTGTCTTTGTTTTCCTTTGTTC 58.280 37.500 0.00 0.00 0.00 3.18
5754 16983 5.132897 TCCTTTCGTCAATTTTCATTGGG 57.867 39.130 0.00 0.00 40.41 4.12
6103 17341 9.499479 AATGGCAATAAAACATTCATACACAAA 57.501 25.926 0.00 0.00 29.38 2.83
6827 18475 0.039256 TAACGCGAACGCAACCTACT 60.039 50.000 15.93 0.00 45.53 2.57
6828 18476 1.280206 AACGCGAACGCAACCTACTC 61.280 55.000 15.93 0.00 45.53 2.59
6829 18477 2.442188 CGCGAACGCAACCTACTCC 61.442 63.158 18.69 0.00 42.06 3.85
6830 18478 2.098831 GCGAACGCAACCTACTCCC 61.099 63.158 14.26 0.00 41.49 4.30
6831 18479 1.590147 CGAACGCAACCTACTCCCT 59.410 57.895 0.00 0.00 0.00 4.20
6832 18480 0.458025 CGAACGCAACCTACTCCCTC 60.458 60.000 0.00 0.00 0.00 4.30
6833 18481 0.108281 GAACGCAACCTACTCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
6834 18482 1.885163 AACGCAACCTACTCCCTCCG 61.885 60.000 0.00 0.00 0.00 4.63
6835 18483 2.348888 CGCAACCTACTCCCTCCGT 61.349 63.158 0.00 0.00 0.00 4.69
6836 18484 1.516423 GCAACCTACTCCCTCCGTC 59.484 63.158 0.00 0.00 0.00 4.79
6837 18485 1.957765 GCAACCTACTCCCTCCGTCC 61.958 65.000 0.00 0.00 0.00 4.79
6838 18486 1.379576 AACCTACTCCCTCCGTCCG 60.380 63.158 0.00 0.00 0.00 4.79
6839 18487 3.217743 CCTACTCCCTCCGTCCGC 61.218 72.222 0.00 0.00 0.00 5.54
6840 18488 3.584052 CTACTCCCTCCGTCCGCG 61.584 72.222 0.00 0.00 37.95 6.46
6841 18489 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
6842 18490 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
6843 18491 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
6844 18492 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
6845 18493 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
6846 18494 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
6847 18495 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
6848 18496 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
6849 18497 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
6850 18498 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
6851 18499 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
6852 18500 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
6853 18501 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
6854 18502 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
6855 18503 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
6856 18504 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
6857 18505 4.910456 GTCCGCGAATAAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
6858 18506 3.669122 CCGCGAATAAGTGTACATCTAGC 59.331 47.826 8.23 0.00 0.00 3.42
6859 18507 4.537965 CGCGAATAAGTGTACATCTAGCT 58.462 43.478 0.00 0.00 0.00 3.32
6860 18508 4.976731 CGCGAATAAGTGTACATCTAGCTT 59.023 41.667 0.00 0.00 0.00 3.74
6861 18509 5.459107 CGCGAATAAGTGTACATCTAGCTTT 59.541 40.000 0.00 0.00 0.00 3.51
6862 18510 6.019801 CGCGAATAAGTGTACATCTAGCTTTT 60.020 38.462 0.00 0.00 0.00 2.27
6863 18511 7.166970 CGCGAATAAGTGTACATCTAGCTTTTA 59.833 37.037 0.00 0.00 0.00 1.52
6864 18512 8.979574 GCGAATAAGTGTACATCTAGCTTTTAT 58.020 33.333 0.00 0.00 0.00 1.40
6966 18614 9.872757 TTATCAAAGTACACTTCAAAACGAATC 57.127 29.630 0.00 0.00 34.61 2.52
6967 18615 7.548196 TCAAAGTACACTTCAAAACGAATCT 57.452 32.000 0.00 0.00 34.61 2.40
6968 18616 8.651391 TCAAAGTACACTTCAAAACGAATCTA 57.349 30.769 0.00 0.00 34.61 1.98
6969 18617 8.761497 TCAAAGTACACTTCAAAACGAATCTAG 58.239 33.333 0.00 0.00 34.61 2.43
6970 18618 8.548721 CAAAGTACACTTCAAAACGAATCTAGT 58.451 33.333 0.00 0.00 34.61 2.57
6971 18619 7.639162 AGTACACTTCAAAACGAATCTAGTG 57.361 36.000 0.00 0.00 34.10 2.74
6972 18620 7.431249 AGTACACTTCAAAACGAATCTAGTGA 58.569 34.615 0.00 0.00 32.89 3.41
6973 18621 8.088981 AGTACACTTCAAAACGAATCTAGTGAT 58.911 33.333 0.00 0.00 32.89 3.06
6974 18622 7.730364 ACACTTCAAAACGAATCTAGTGATT 57.270 32.000 0.00 0.00 44.79 2.57
6987 18635 7.573968 AATCTAGTGATTCTAATTTGGTGCC 57.426 36.000 0.00 0.00 38.42 5.01
6988 18636 6.061022 TCTAGTGATTCTAATTTGGTGCCA 57.939 37.500 0.00 0.00 0.00 4.92
6989 18637 6.662755 TCTAGTGATTCTAATTTGGTGCCAT 58.337 36.000 0.00 0.00 0.00 4.40
6990 18638 7.801104 TCTAGTGATTCTAATTTGGTGCCATA 58.199 34.615 0.00 0.00 0.00 2.74
6991 18639 8.271458 TCTAGTGATTCTAATTTGGTGCCATAA 58.729 33.333 0.00 0.00 0.00 1.90
6992 18640 7.716799 AGTGATTCTAATTTGGTGCCATAAA 57.283 32.000 0.00 0.00 0.00 1.40
6993 18641 8.310122 AGTGATTCTAATTTGGTGCCATAAAT 57.690 30.769 0.00 0.00 0.00 1.40
6994 18642 8.199449 AGTGATTCTAATTTGGTGCCATAAATG 58.801 33.333 0.00 0.00 0.00 2.32
6995 18643 6.985645 TGATTCTAATTTGGTGCCATAAATGC 59.014 34.615 0.00 0.00 0.00 3.56
6996 18644 6.543430 TTCTAATTTGGTGCCATAAATGCT 57.457 33.333 0.00 0.00 0.00 3.79
6997 18645 6.543430 TCTAATTTGGTGCCATAAATGCTT 57.457 33.333 0.00 0.00 0.00 3.91
6998 18646 6.945218 TCTAATTTGGTGCCATAAATGCTTT 58.055 32.000 0.00 0.00 0.00 3.51
6999 18647 7.393216 TCTAATTTGGTGCCATAAATGCTTTT 58.607 30.769 2.86 2.86 0.00 2.27
7000 18648 8.535335 TCTAATTTGGTGCCATAAATGCTTTTA 58.465 29.630 7.20 7.20 0.00 1.52
7001 18649 7.614124 AATTTGGTGCCATAAATGCTTTTAG 57.386 32.000 10.20 0.33 31.07 1.85
7002 18650 5.736951 TTGGTGCCATAAATGCTTTTAGT 57.263 34.783 10.20 0.00 31.07 2.24
7003 18651 5.736951 TGGTGCCATAAATGCTTTTAGTT 57.263 34.783 10.20 0.00 31.07 2.24
7004 18652 6.107901 TGGTGCCATAAATGCTTTTAGTTT 57.892 33.333 10.20 0.00 31.07 2.66
7005 18653 6.529220 TGGTGCCATAAATGCTTTTAGTTTT 58.471 32.000 10.20 0.00 31.07 2.43
7006 18654 6.995091 TGGTGCCATAAATGCTTTTAGTTTTT 59.005 30.769 10.20 0.00 31.07 1.94
7026 18674 6.709018 TTTTTCCTAGAAAGGTGGTCAAAG 57.291 37.500 0.00 0.00 44.09 2.77
7027 18675 5.382664 TTTCCTAGAAAGGTGGTCAAAGT 57.617 39.130 0.00 0.00 44.09 2.66
7028 18676 5.382664 TTCCTAGAAAGGTGGTCAAAGTT 57.617 39.130 0.00 0.00 44.09 2.66
7029 18677 5.382664 TCCTAGAAAGGTGGTCAAAGTTT 57.617 39.130 0.00 0.00 44.09 2.66
7030 18678 5.762279 TCCTAGAAAGGTGGTCAAAGTTTT 58.238 37.500 0.00 0.00 44.09 2.43
7031 18679 6.902408 TCCTAGAAAGGTGGTCAAAGTTTTA 58.098 36.000 0.00 0.00 44.09 1.52
7032 18680 7.348033 TCCTAGAAAGGTGGTCAAAGTTTTAA 58.652 34.615 0.00 0.00 44.09 1.52
7033 18681 7.835181 TCCTAGAAAGGTGGTCAAAGTTTTAAA 59.165 33.333 0.00 0.00 44.09 1.52
7034 18682 8.471609 CCTAGAAAGGTGGTCAAAGTTTTAAAA 58.528 33.333 0.00 0.00 38.19 1.52
7035 18683 9.297586 CTAGAAAGGTGGTCAAAGTTTTAAAAC 57.702 33.333 21.06 21.06 39.17 2.43
7072 18720 9.953825 GACAAAAACTAGATGTACACTTATTCG 57.046 33.333 0.00 0.00 0.00 3.34
7073 18721 8.440833 ACAAAAACTAGATGTACACTTATTCGC 58.559 33.333 0.00 0.00 0.00 4.70
7074 18722 6.807708 AAACTAGATGTACACTTATTCGCG 57.192 37.500 0.00 0.00 0.00 5.87
7075 18723 5.746307 ACTAGATGTACACTTATTCGCGA 57.254 39.130 3.71 3.71 0.00 5.87
7076 18724 6.127810 ACTAGATGTACACTTATTCGCGAA 57.872 37.500 25.66 25.66 0.00 4.70
7077 18725 5.970023 ACTAGATGTACACTTATTCGCGAAC 59.030 40.000 26.00 10.20 0.00 3.95
7078 18726 3.789756 AGATGTACACTTATTCGCGAACG 59.210 43.478 26.00 17.44 42.01 3.95
7079 18727 2.252747 TGTACACTTATTCGCGAACGG 58.747 47.619 26.00 18.39 40.63 4.44
7080 18728 2.095314 TGTACACTTATTCGCGAACGGA 60.095 45.455 26.00 9.89 40.63 4.69
7081 18729 1.625616 ACACTTATTCGCGAACGGAG 58.374 50.000 26.00 22.27 40.63 4.63
7082 18730 0.921347 CACTTATTCGCGAACGGAGG 59.079 55.000 26.00 14.95 40.63 4.30
7083 18731 0.813184 ACTTATTCGCGAACGGAGGA 59.187 50.000 26.00 0.00 40.63 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.079443 CCCCATATTTAGAGGGTGTTTGGA 60.079 45.833 0.00 0.00 41.16 3.53
2 3 3.636764 GCCCCATATTTAGAGGGTGTTTG 59.363 47.826 0.00 0.00 41.99 2.93
3 4 3.270960 TGCCCCATATTTAGAGGGTGTTT 59.729 43.478 0.00 0.00 41.99 2.83
4 5 2.856231 TGCCCCATATTTAGAGGGTGTT 59.144 45.455 0.00 0.00 41.99 3.32
6 7 3.814504 ATGCCCCATATTTAGAGGGTG 57.185 47.619 0.00 0.00 41.99 4.61
7 8 4.263949 GCTAATGCCCCATATTTAGAGGGT 60.264 45.833 0.00 0.00 41.99 4.34
8 9 4.018050 AGCTAATGCCCCATATTTAGAGGG 60.018 45.833 0.00 0.00 42.94 4.30
9 10 5.184892 AGCTAATGCCCCATATTTAGAGG 57.815 43.478 0.00 0.00 40.80 3.69
10 11 5.809001 TGAGCTAATGCCCCATATTTAGAG 58.191 41.667 0.00 0.00 40.80 2.43
139 140 4.348168 TCTCCAAAATGCCCTACTCCTATC 59.652 45.833 0.00 0.00 0.00 2.08
144 145 2.644676 GGTCTCCAAAATGCCCTACTC 58.355 52.381 0.00 0.00 0.00 2.59
145 146 1.065418 CGGTCTCCAAAATGCCCTACT 60.065 52.381 0.00 0.00 0.00 2.57
146 147 1.065709 TCGGTCTCCAAAATGCCCTAC 60.066 52.381 0.00 0.00 0.00 3.18
147 148 1.209504 CTCGGTCTCCAAAATGCCCTA 59.790 52.381 0.00 0.00 0.00 3.53
148 149 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
149 150 1.657751 GCTCGGTCTCCAAAATGCCC 61.658 60.000 0.00 0.00 0.00 5.36
151 152 0.729690 GAGCTCGGTCTCCAAAATGC 59.270 55.000 0.00 0.00 0.00 3.56
159 160 1.739049 CTCCATGGAGCTCGGTCTC 59.261 63.158 28.45 0.00 35.31 3.36
160 161 3.947173 CTCCATGGAGCTCGGTCT 58.053 61.111 28.45 0.00 35.31 3.85
168 169 4.280819 TCAAAATAAAGGGCTCCATGGAG 58.719 43.478 33.73 33.73 44.56 3.86
169 170 4.329638 TCAAAATAAAGGGCTCCATGGA 57.670 40.909 15.27 15.27 0.00 3.41
170 171 5.419239 TTTCAAAATAAAGGGCTCCATGG 57.581 39.130 4.97 4.97 0.00 3.66
171 172 7.926674 ATTTTTCAAAATAAAGGGCTCCATG 57.073 32.000 0.00 0.00 36.88 3.66
172 173 8.162746 TGAATTTTTCAAAATAAAGGGCTCCAT 58.837 29.630 0.00 0.00 37.62 3.41
173 174 7.512992 TGAATTTTTCAAAATAAAGGGCTCCA 58.487 30.769 0.00 0.00 37.62 3.86
174 175 7.977789 TGAATTTTTCAAAATAAAGGGCTCC 57.022 32.000 0.00 0.00 37.62 4.70
232 233 8.752187 ACATCCTTGCATACATGTCTAATTTTT 58.248 29.630 0.00 0.00 0.00 1.94
233 234 8.297470 ACATCCTTGCATACATGTCTAATTTT 57.703 30.769 0.00 0.00 0.00 1.82
234 235 7.886629 ACATCCTTGCATACATGTCTAATTT 57.113 32.000 0.00 0.00 0.00 1.82
235 236 8.978874 TTACATCCTTGCATACATGTCTAATT 57.021 30.769 0.00 0.00 31.83 1.40
236 237 8.978874 TTTACATCCTTGCATACATGTCTAAT 57.021 30.769 0.00 0.00 31.83 1.73
237 238 8.046708 ACTTTACATCCTTGCATACATGTCTAA 58.953 33.333 0.00 0.00 31.83 2.10
238 239 7.495606 CACTTTACATCCTTGCATACATGTCTA 59.504 37.037 0.00 0.00 31.83 2.59
239 240 6.317140 CACTTTACATCCTTGCATACATGTCT 59.683 38.462 0.00 0.00 31.83 3.41
240 241 6.094048 ACACTTTACATCCTTGCATACATGTC 59.906 38.462 0.00 0.00 31.83 3.06
242 243 6.441093 ACACTTTACATCCTTGCATACATG 57.559 37.500 0.00 0.00 0.00 3.21
243 244 7.775093 ACATACACTTTACATCCTTGCATACAT 59.225 33.333 0.00 0.00 0.00 2.29
244 245 7.109501 ACATACACTTTACATCCTTGCATACA 58.890 34.615 0.00 0.00 0.00 2.29
245 246 7.553881 ACATACACTTTACATCCTTGCATAC 57.446 36.000 0.00 0.00 0.00 2.39
246 247 9.271828 CATACATACACTTTACATCCTTGCATA 57.728 33.333 0.00 0.00 0.00 3.14
248 249 7.334858 TCATACATACACTTTACATCCTTGCA 58.665 34.615 0.00 0.00 0.00 4.08
277 278 9.822185 GCAATTCAAGGTATTTCATCCTAAAAT 57.178 29.630 0.00 0.00 33.27 1.82
278 279 7.973388 CGCAATTCAAGGTATTTCATCCTAAAA 59.027 33.333 0.00 0.00 33.27 1.52
281 282 6.353323 TCGCAATTCAAGGTATTTCATCCTA 58.647 36.000 0.00 0.00 33.27 2.94
282 283 5.192927 TCGCAATTCAAGGTATTTCATCCT 58.807 37.500 0.00 0.00 35.34 3.24
283 284 5.499139 TCGCAATTCAAGGTATTTCATCC 57.501 39.130 0.00 0.00 0.00 3.51
284 285 4.972440 GCTCGCAATTCAAGGTATTTCATC 59.028 41.667 0.00 0.00 0.00 2.92
287 288 4.346129 CAGCTCGCAATTCAAGGTATTTC 58.654 43.478 0.00 0.00 0.00 2.17
288 289 3.428045 GCAGCTCGCAATTCAAGGTATTT 60.428 43.478 3.64 0.00 41.79 1.40
290 291 1.672881 GCAGCTCGCAATTCAAGGTAT 59.327 47.619 3.64 0.00 41.79 2.73
292 293 1.878775 GCAGCTCGCAATTCAAGGT 59.121 52.632 3.64 0.00 41.79 3.50
293 294 4.779819 GCAGCTCGCAATTCAAGG 57.220 55.556 3.64 0.00 41.79 3.61
319 320 9.696917 GTTCATCTTTAAAGTCCATGATTTTGT 57.303 29.630 14.74 0.00 0.00 2.83
321 322 9.918630 CTGTTCATCTTTAAAGTCCATGATTTT 57.081 29.630 14.74 0.00 0.00 1.82
322 323 9.082313 ACTGTTCATCTTTAAAGTCCATGATTT 57.918 29.630 14.74 0.00 0.00 2.17
323 324 8.641498 ACTGTTCATCTTTAAAGTCCATGATT 57.359 30.769 14.74 1.07 0.00 2.57
325 326 8.154203 TGTACTGTTCATCTTTAAAGTCCATGA 58.846 33.333 14.74 13.14 0.00 3.07
326 327 8.322906 TGTACTGTTCATCTTTAAAGTCCATG 57.677 34.615 14.74 11.19 0.00 3.66
330 331 9.922305 GCATATGTACTGTTCATCTTTAAAGTC 57.078 33.333 14.74 3.45 0.00 3.01
331 332 9.672673 AGCATATGTACTGTTCATCTTTAAAGT 57.327 29.630 14.74 0.22 0.00 2.66
341 342 6.884295 AGGCTTTTTAGCATATGTACTGTTCA 59.116 34.615 4.29 0.00 36.33 3.18
342 343 7.065803 TGAGGCTTTTTAGCATATGTACTGTTC 59.934 37.037 4.29 0.00 36.33 3.18
343 344 6.884295 TGAGGCTTTTTAGCATATGTACTGTT 59.116 34.615 4.29 0.00 36.33 3.16
344 345 6.414732 TGAGGCTTTTTAGCATATGTACTGT 58.585 36.000 4.29 0.00 36.33 3.55
345 346 6.763135 TCTGAGGCTTTTTAGCATATGTACTG 59.237 38.462 4.29 0.00 36.33 2.74
346 347 6.889198 TCTGAGGCTTTTTAGCATATGTACT 58.111 36.000 4.29 0.00 36.33 2.73
347 348 7.736447 ATCTGAGGCTTTTTAGCATATGTAC 57.264 36.000 4.29 0.00 36.33 2.90
348 349 8.623903 CAAATCTGAGGCTTTTTAGCATATGTA 58.376 33.333 4.29 0.00 36.33 2.29
349 350 7.123247 ACAAATCTGAGGCTTTTTAGCATATGT 59.877 33.333 4.29 0.00 36.33 2.29
350 351 7.486647 ACAAATCTGAGGCTTTTTAGCATATG 58.513 34.615 0.00 0.00 36.33 1.78
351 352 7.559170 AGACAAATCTGAGGCTTTTTAGCATAT 59.441 33.333 0.00 0.00 32.29 1.78
354 355 5.072741 AGACAAATCTGAGGCTTTTTAGCA 58.927 37.500 0.00 0.00 32.29 3.49
356 357 8.877808 AAAAAGACAAATCTGAGGCTTTTTAG 57.122 30.769 15.89 0.00 38.52 1.85
387 388 9.010029 AGTTCGAAATACAATAAAATGTGAGGT 57.990 29.630 0.00 0.00 34.75 3.85
400 401 9.302345 TGTGCAAATTTTTAGTTCGAAATACAA 57.698 25.926 4.56 2.29 0.00 2.41
402 403 7.937294 CGTGTGCAAATTTTTAGTTCGAAATAC 59.063 33.333 4.56 0.00 0.00 1.89
404 405 6.474102 ACGTGTGCAAATTTTTAGTTCGAAAT 59.526 30.769 2.72 2.72 0.00 2.17
406 407 5.228220 CACGTGTGCAAATTTTTAGTTCGAA 59.772 36.000 7.58 0.00 0.00 3.71
408 409 4.497608 ACACGTGTGCAAATTTTTAGTTCG 59.502 37.500 22.71 0.00 0.00 3.95
410 411 6.323266 TGTACACGTGTGCAAATTTTTAGTT 58.677 32.000 32.87 3.26 37.70 2.24
411 412 5.881447 TGTACACGTGTGCAAATTTTTAGT 58.119 33.333 32.87 3.93 37.70 2.24
412 413 6.984740 ATGTACACGTGTGCAAATTTTTAG 57.015 33.333 36.85 0.68 43.49 1.85
414 415 7.436673 ACATAATGTACACGTGTGCAAATTTTT 59.563 29.630 36.85 28.05 43.49 1.94
415 416 6.920758 ACATAATGTACACGTGTGCAAATTTT 59.079 30.769 36.85 28.36 43.49 1.82
416 417 6.442952 ACATAATGTACACGTGTGCAAATTT 58.557 32.000 36.85 28.66 43.49 1.82
417 418 6.007936 ACATAATGTACACGTGTGCAAATT 57.992 33.333 36.85 29.27 43.49 1.82
418 419 5.621197 ACATAATGTACACGTGTGCAAAT 57.379 34.783 36.85 29.18 43.49 2.32
420 421 6.103330 AGATACATAATGTACACGTGTGCAA 58.897 36.000 36.85 24.91 43.49 4.08
421 422 5.656480 AGATACATAATGTACACGTGTGCA 58.344 37.500 35.74 35.74 44.32 4.57
422 423 6.362551 CCTAGATACATAATGTACACGTGTGC 59.637 42.308 30.83 28.95 35.42 4.57
424 425 7.578310 ACCTAGATACATAATGTACACGTGT 57.422 36.000 26.52 26.52 35.42 4.49
492 493 9.624697 GGCCTTTATTTGGAAATTTCAAAATTC 57.375 29.630 29.65 17.18 40.40 2.17
493 494 9.365906 AGGCCTTTATTTGGAAATTTCAAAATT 57.634 25.926 29.65 17.91 40.40 1.82
494 495 8.938801 AGGCCTTTATTTGGAAATTTCAAAAT 57.061 26.923 28.23 28.23 42.10 1.82
496 497 7.995488 TGAAGGCCTTTATTTGGAAATTTCAAA 59.005 29.630 21.54 12.14 38.30 2.69
498 499 7.072263 TGAAGGCCTTTATTTGGAAATTTCA 57.928 32.000 21.54 4.52 0.00 2.69
499 500 7.066163 CCATGAAGGCCTTTATTTGGAAATTTC 59.934 37.037 21.54 9.83 0.00 2.17
500 501 6.885918 CCATGAAGGCCTTTATTTGGAAATTT 59.114 34.615 21.54 0.00 0.00 1.82
501 502 6.215227 TCCATGAAGGCCTTTATTTGGAAATT 59.785 34.615 23.60 0.02 37.29 1.82
502 503 5.725822 TCCATGAAGGCCTTTATTTGGAAAT 59.274 36.000 23.60 0.69 37.29 2.17
504 505 4.682563 TCCATGAAGGCCTTTATTTGGAA 58.317 39.130 23.60 11.79 37.29 3.53
505 506 4.264352 ACTCCATGAAGGCCTTTATTTGGA 60.264 41.667 23.99 23.99 37.29 3.53
506 507 4.026052 ACTCCATGAAGGCCTTTATTTGG 58.974 43.478 21.54 20.20 37.29 3.28
507 508 5.654497 GAACTCCATGAAGGCCTTTATTTG 58.346 41.667 21.54 14.05 37.29 2.32
508 509 4.399303 CGAACTCCATGAAGGCCTTTATTT 59.601 41.667 21.54 11.87 37.29 1.40
509 510 3.947834 CGAACTCCATGAAGGCCTTTATT 59.052 43.478 21.54 6.08 37.29 1.40
511 512 2.355716 CCGAACTCCATGAAGGCCTTTA 60.356 50.000 21.54 17.17 37.29 1.85
512 513 1.614317 CCGAACTCCATGAAGGCCTTT 60.614 52.381 21.54 0.44 37.29 3.11
514 515 1.201429 ACCGAACTCCATGAAGGCCT 61.201 55.000 0.00 0.00 37.29 5.19
515 516 0.744771 GACCGAACTCCATGAAGGCC 60.745 60.000 0.00 0.00 37.29 5.19
516 517 0.250513 AGACCGAACTCCATGAAGGC 59.749 55.000 0.00 0.00 37.29 4.35
517 518 2.301577 GAGACCGAACTCCATGAAGG 57.698 55.000 0.00 0.00 39.47 3.46
531 532 1.401018 CGAAAATGCCAAACGGAGACC 60.401 52.381 0.00 0.00 0.00 3.85
532 533 1.265905 ACGAAAATGCCAAACGGAGAC 59.734 47.619 0.00 0.00 0.00 3.36
533 534 1.600023 ACGAAAATGCCAAACGGAGA 58.400 45.000 0.00 0.00 0.00 3.71
535 536 3.062369 CGTATACGAAAATGCCAAACGGA 59.938 43.478 20.58 0.00 43.02 4.69
536 537 3.181518 ACGTATACGAAAATGCCAAACGG 60.182 43.478 30.77 0.00 43.02 4.44
537 538 3.993547 ACGTATACGAAAATGCCAAACG 58.006 40.909 30.77 2.65 43.02 3.60
538 539 5.291614 TCCTACGTATACGAAAATGCCAAAC 59.708 40.000 30.77 0.00 43.02 2.93
539 540 5.417811 TCCTACGTATACGAAAATGCCAAA 58.582 37.500 30.77 3.10 43.02 3.28
542 543 4.443394 CACTCCTACGTATACGAAAATGCC 59.557 45.833 30.77 0.00 43.02 4.40
543 544 5.276270 TCACTCCTACGTATACGAAAATGC 58.724 41.667 30.77 0.00 43.02 3.56
544 545 6.722301 TCTCACTCCTACGTATACGAAAATG 58.278 40.000 30.77 18.74 43.02 2.32
545 546 6.541641 ACTCTCACTCCTACGTATACGAAAAT 59.458 38.462 30.77 11.58 43.02 1.82
547 548 5.423015 ACTCTCACTCCTACGTATACGAAA 58.577 41.667 30.77 16.84 43.02 3.46
549 550 4.662468 ACTCTCACTCCTACGTATACGA 57.338 45.455 30.77 13.69 43.02 3.43
550 551 4.683781 GGTACTCTCACTCCTACGTATACG 59.316 50.000 23.24 23.24 46.33 3.06
551 552 5.605534 TGGTACTCTCACTCCTACGTATAC 58.394 45.833 0.00 0.00 0.00 1.47
552 553 5.876651 TGGTACTCTCACTCCTACGTATA 57.123 43.478 0.00 0.00 0.00 1.47
553 554 4.767578 TGGTACTCTCACTCCTACGTAT 57.232 45.455 0.00 0.00 0.00 3.06
555 556 3.080319 GTTGGTACTCTCACTCCTACGT 58.920 50.000 0.00 0.00 0.00 3.57
556 557 3.345414 AGTTGGTACTCTCACTCCTACG 58.655 50.000 0.00 0.00 32.70 3.51
557 558 7.407393 AAATAGTTGGTACTCTCACTCCTAC 57.593 40.000 0.00 0.00 35.78 3.18
559 560 6.936968 AAAATAGTTGGTACTCTCACTCCT 57.063 37.500 0.00 0.00 35.78 3.69
560 561 8.092687 TGTAAAAATAGTTGGTACTCTCACTCC 58.907 37.037 0.00 0.00 35.78 3.85
562 563 8.426489 TGTGTAAAAATAGTTGGTACTCTCACT 58.574 33.333 0.00 0.00 35.78 3.41
564 565 8.644216 TCTGTGTAAAAATAGTTGGTACTCTCA 58.356 33.333 0.00 0.00 35.78 3.27
565 566 9.141400 CTCTGTGTAAAAATAGTTGGTACTCTC 57.859 37.037 0.00 0.00 35.78 3.20
578 579 7.280356 AGACAGTTGGTACTCTGTGTAAAAAT 58.720 34.615 18.06 0.00 41.87 1.82
580 581 6.229936 AGACAGTTGGTACTCTGTGTAAAA 57.770 37.500 18.06 0.00 41.87 1.52
586 587 5.116882 GTGAAAAGACAGTTGGTACTCTGT 58.883 41.667 14.85 14.85 43.57 3.41
587 588 5.116180 TGTGAAAAGACAGTTGGTACTCTG 58.884 41.667 10.13 10.13 37.14 3.35
588 589 5.128827 TCTGTGAAAAGACAGTTGGTACTCT 59.871 40.000 0.00 0.00 43.38 3.24
589 590 5.357257 TCTGTGAAAAGACAGTTGGTACTC 58.643 41.667 0.00 0.00 43.38 2.59
590 591 5.104900 ACTCTGTGAAAAGACAGTTGGTACT 60.105 40.000 0.00 0.00 43.38 2.73
591 592 5.116882 ACTCTGTGAAAAGACAGTTGGTAC 58.883 41.667 0.00 0.00 43.38 3.34
593 594 4.222124 ACTCTGTGAAAAGACAGTTGGT 57.778 40.909 0.00 0.00 43.38 3.67
604 605 8.080417 GCGTTCCTATATATGTACTCTGTGAAA 58.920 37.037 0.00 0.00 0.00 2.69
605 606 7.447545 AGCGTTCCTATATATGTACTCTGTGAA 59.552 37.037 0.00 0.00 0.00 3.18
606 607 6.940867 AGCGTTCCTATATATGTACTCTGTGA 59.059 38.462 0.00 0.00 0.00 3.58
607 608 7.147143 AGCGTTCCTATATATGTACTCTGTG 57.853 40.000 0.00 0.00 0.00 3.66
679 3674 7.435488 CCAAGTTTATCACGAGACTTGTATAGG 59.565 40.741 12.41 0.00 44.54 2.57
890 3896 7.880160 AGTAAATGCATATAAGGTTCAAGCA 57.120 32.000 0.00 0.00 34.78 3.91
998 4018 1.922447 TGGAAGGTGTGGAAGGCATAT 59.078 47.619 0.00 0.00 0.00 1.78
1378 4398 9.612066 GACAAAATTCATCTCTATCCTTTCTCT 57.388 33.333 0.00 0.00 0.00 3.10
1417 4437 1.718757 GCTTCTTGGCGCAGGTATGG 61.719 60.000 10.83 0.00 0.00 2.74
1456 4476 0.962356 CTTGCAGCAGGAACCCGATT 60.962 55.000 0.00 0.00 0.00 3.34
1555 5135 7.216494 TCCGTCATCTGCATAAATGATAAAGA 58.784 34.615 9.09 3.48 34.60 2.52
1589 5169 4.019858 CGATGATTCTCCATAGGCCTCTA 58.980 47.826 9.68 0.00 0.00 2.43
1668 5248 7.393841 ACCTTGTACTAGTAACAGATCTGAC 57.606 40.000 29.27 17.19 0.00 3.51
1676 5256 6.041523 ACGGGTAAAACCTTGTACTAGTAACA 59.958 38.462 3.61 2.80 38.64 2.41
1726 5306 6.661377 GCCTCTTGGTATAGATCTGTCATCTA 59.339 42.308 5.18 0.00 34.04 1.98
2058 7241 4.435651 GCTTCGGAGTGTTAGCATACAAAC 60.436 45.833 0.00 0.00 33.88 2.93
2221 7425 0.107017 ACTTATCCAGCAATGCCGCT 60.107 50.000 0.00 0.00 45.21 5.52
2267 7471 5.455056 AGTGACGATGACTTTCTTACTGT 57.545 39.130 0.00 0.00 0.00 3.55
2676 7893 5.008619 TCTTAGAACACAAACCACGTACA 57.991 39.130 0.00 0.00 0.00 2.90
2683 7900 7.373778 ACGGAATATTCTTAGAACACAAACC 57.626 36.000 14.95 0.00 0.00 3.27
2687 7904 7.341256 ACTCCTACGGAATATTCTTAGAACACA 59.659 37.037 14.95 0.00 0.00 3.72
2706 7923 5.179555 GTCATCTTTCACCACAAACTCCTAC 59.820 44.000 0.00 0.00 0.00 3.18
2729 7946 2.418746 GGACATCAACATGGTCGCTAGT 60.419 50.000 0.00 0.00 33.82 2.57
2889 8107 2.262292 CGGGTGCAAAGCATTGGG 59.738 61.111 3.55 0.00 41.91 4.12
2926 8144 1.243902 TGCGCAAGGTAAAAAGGGAG 58.756 50.000 8.16 0.00 38.28 4.30
2996 8214 4.835678 ACTTCATGGGAAATTTGCAATCC 58.164 39.130 12.05 8.78 31.35 3.01
3001 8219 6.873076 TCATGTTTACTTCATGGGAAATTTGC 59.127 34.615 0.22 0.22 41.79 3.68
3013 8231 7.226720 GTCACTTCCTTCTTCATGTTTACTTCA 59.773 37.037 0.00 0.00 0.00 3.02
3100 8318 1.348696 ACCGACGAATGGGGTTACTTT 59.651 47.619 0.00 0.00 0.00 2.66
3211 8429 1.132881 TCAATTTGTGAAAGGGGGCCT 60.133 47.619 0.84 0.00 31.51 5.19
3241 8460 5.131308 AGCTGATAGAGTACAGTGTAGAGGA 59.869 44.000 2.39 0.00 36.62 3.71
3279 8498 6.594788 TTCTTGGCTTATCTTGCAAGAATT 57.405 33.333 31.55 19.26 38.77 2.17
3280 8499 6.786967 ATTCTTGGCTTATCTTGCAAGAAT 57.213 33.333 31.55 21.16 39.86 2.40
3281 8500 7.886629 ATATTCTTGGCTTATCTTGCAAGAA 57.113 32.000 31.55 16.28 39.39 2.52
3282 8501 7.886629 AATATTCTTGGCTTATCTTGCAAGA 57.113 32.000 30.23 30.23 39.78 3.02
3371 8599 2.957006 ACTGGTATATTCCGCTCGACTT 59.043 45.455 0.00 0.00 0.00 3.01
3515 8745 8.700973 ACAACAACACTAAGATAAATTTTGGGT 58.299 29.630 0.00 0.00 0.00 4.51
3605 8843 1.406539 GAAAGACATTGCGCCATCCAT 59.593 47.619 4.18 0.00 0.00 3.41
3627 8865 2.110011 ACTTGGCTTGGGGACTACAAAT 59.890 45.455 0.00 0.00 0.00 2.32
3632 8870 0.251165 GCAACTTGGCTTGGGGACTA 60.251 55.000 0.00 0.00 0.00 2.59
3633 8871 1.531602 GCAACTTGGCTTGGGGACT 60.532 57.895 0.00 0.00 0.00 3.85
3635 8873 1.155859 ATGCAACTTGGCTTGGGGA 59.844 52.632 0.00 0.00 34.04 4.81
3692 12318 6.613271 ACAGACCTCTTCTATGATGTTACCAT 59.387 38.462 0.00 0.00 31.12 3.55
3969 12599 4.744795 AGCTATGACCACTTTACTCCTG 57.255 45.455 0.00 0.00 0.00 3.86
4021 12653 1.400846 CTTGCATGTCATGGCAGAGAC 59.599 52.381 14.64 14.00 41.68 3.36
4099 12731 0.690762 TGCCACACTTAGGTCTTCCC 59.309 55.000 0.00 0.00 0.00 3.97
4142 12774 5.957168 TCAATGGCATCCCTCTTGATTTTTA 59.043 36.000 0.00 0.00 32.32 1.52
4310 12953 5.899120 GTGTATGTCTTCACACCTCTCTA 57.101 43.478 0.00 0.00 39.30 2.43
4337 12980 1.377536 GCCTTCACAGAATGAGAGGC 58.622 55.000 11.63 11.63 45.75 4.70
4358 13001 8.477984 TTTTAGATTTTGCAACATCTATTGGC 57.522 30.769 27.53 3.69 33.04 4.52
4484 13335 4.699735 TGCGATGAATTCAAACCACTGTAT 59.300 37.500 13.09 0.00 0.00 2.29
4491 13342 7.447430 CAAAATTACTGCGATGAATTCAAACC 58.553 34.615 13.09 4.09 0.00 3.27
4608 13463 0.320697 AGTGGTGGCCTACTTTCGAC 59.679 55.000 3.32 0.00 0.00 4.20
4847 13736 7.459486 CACAAGAACTAGATATGCACAAGAAC 58.541 38.462 0.00 0.00 0.00 3.01
4864 13763 7.750903 GTGTAATAAGATGGAAAGCACAAGAAC 59.249 37.037 0.00 0.00 0.00 3.01
4880 13782 7.172868 TCTGGGTTACGAATGTGTAATAAGA 57.827 36.000 0.00 0.00 36.75 2.10
4894 13796 5.872617 TCAGAACACATAAATCTGGGTTACG 59.127 40.000 2.53 0.00 42.69 3.18
4978 13885 9.880157 ACCATTATACGTACCAATAATATGGAC 57.120 33.333 12.33 0.00 43.54 4.02
5046 13955 1.966493 GCGTCACACAATGGCTACCG 61.966 60.000 0.00 0.00 0.00 4.02
5126 15463 0.536460 AATCACGACCGGGTTTGCTT 60.536 50.000 6.32 0.00 0.00 3.91
5135 15472 2.505498 CGCGGAGAAATCACGACCG 61.505 63.158 0.00 0.00 45.26 4.79
5138 15475 1.623081 GCAACGCGGAGAAATCACGA 61.623 55.000 12.47 0.00 0.00 4.35
5162 15499 2.361737 GGCCCAACCTCAAGCTCC 60.362 66.667 0.00 0.00 34.51 4.70
5194 15531 7.067008 CCGTGAAACCTGGTCTCATATAATTTT 59.933 37.037 6.07 0.00 0.00 1.82
5195 15532 6.542370 CCGTGAAACCTGGTCTCATATAATTT 59.458 38.462 6.07 0.00 0.00 1.82
5196 15533 6.055588 CCGTGAAACCTGGTCTCATATAATT 58.944 40.000 6.07 0.00 0.00 1.40
5197 15534 5.130477 ACCGTGAAACCTGGTCTCATATAAT 59.870 40.000 6.07 0.00 0.00 1.28
5198 15535 4.468510 ACCGTGAAACCTGGTCTCATATAA 59.531 41.667 6.07 0.00 0.00 0.98
5199 15536 4.028131 ACCGTGAAACCTGGTCTCATATA 58.972 43.478 6.07 0.00 0.00 0.86
5200 15537 2.838202 ACCGTGAAACCTGGTCTCATAT 59.162 45.455 6.07 0.00 0.00 1.78
5201 15538 2.253610 ACCGTGAAACCTGGTCTCATA 58.746 47.619 6.07 0.00 0.00 2.15
5202 15539 1.056660 ACCGTGAAACCTGGTCTCAT 58.943 50.000 6.07 0.00 0.00 2.90
5203 15540 0.834612 AACCGTGAAACCTGGTCTCA 59.165 50.000 0.00 0.00 34.11 3.27
5204 15541 2.036862 ACTAACCGTGAAACCTGGTCTC 59.963 50.000 0.00 0.00 34.11 3.36
5205 15542 2.044758 ACTAACCGTGAAACCTGGTCT 58.955 47.619 0.00 0.00 34.11 3.85
5206 15543 2.538512 ACTAACCGTGAAACCTGGTC 57.461 50.000 0.00 0.00 34.11 4.02
5207 15544 2.301009 CCTACTAACCGTGAAACCTGGT 59.699 50.000 0.00 0.00 37.68 4.00
5208 15545 2.301009 ACCTACTAACCGTGAAACCTGG 59.699 50.000 0.00 0.00 0.00 4.45
5209 15546 3.006110 TCACCTACTAACCGTGAAACCTG 59.994 47.826 0.00 0.00 33.72 4.00
5210 15547 3.233507 TCACCTACTAACCGTGAAACCT 58.766 45.455 0.00 0.00 33.72 3.50
5211 15548 3.256631 TCTCACCTACTAACCGTGAAACC 59.743 47.826 0.00 0.00 36.16 3.27
5212 15549 4.233005 GTCTCACCTACTAACCGTGAAAC 58.767 47.826 0.00 0.00 36.16 2.78
5213 15550 3.256631 GGTCTCACCTACTAACCGTGAAA 59.743 47.826 0.00 0.00 36.16 2.69
5214 15551 2.821969 GGTCTCACCTACTAACCGTGAA 59.178 50.000 0.00 0.00 36.16 3.18
5215 15552 2.440409 GGTCTCACCTACTAACCGTGA 58.560 52.381 0.00 0.00 34.73 4.35
5216 15553 1.475682 GGGTCTCACCTACTAACCGTG 59.524 57.143 0.00 0.00 38.64 4.94
5217 15554 1.844687 GGGTCTCACCTACTAACCGT 58.155 55.000 0.00 0.00 38.64 4.83
5218 15555 0.737219 CGGGTCTCACCTACTAACCG 59.263 60.000 0.00 0.00 38.64 4.44
5219 15556 1.747924 GACGGGTCTCACCTACTAACC 59.252 57.143 0.00 0.00 38.64 2.85
5220 15557 1.747924 GGACGGGTCTCACCTACTAAC 59.252 57.143 0.00 0.00 38.64 2.34
5221 15558 1.637553 AGGACGGGTCTCACCTACTAA 59.362 52.381 0.00 0.00 38.64 2.24
5222 15559 1.064906 CAGGACGGGTCTCACCTACTA 60.065 57.143 0.00 0.00 38.64 1.82
5223 15560 0.323542 CAGGACGGGTCTCACCTACT 60.324 60.000 0.00 0.00 38.64 2.57
5224 15561 0.323178 TCAGGACGGGTCTCACCTAC 60.323 60.000 0.00 0.00 38.64 3.18
5225 15562 0.629596 ATCAGGACGGGTCTCACCTA 59.370 55.000 0.00 0.00 38.64 3.08
5226 15563 0.972983 CATCAGGACGGGTCTCACCT 60.973 60.000 0.00 0.00 38.64 4.00
5227 15564 1.517832 CATCAGGACGGGTCTCACC 59.482 63.158 0.00 0.00 37.60 4.02
5228 15565 0.970937 TCCATCAGGACGGGTCTCAC 60.971 60.000 0.00 0.00 39.61 3.51
5229 15566 1.386550 TCCATCAGGACGGGTCTCA 59.613 57.895 0.00 0.00 39.61 3.27
5230 15567 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
5239 15576 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
5240 15577 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
5241 15578 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
5242 15579 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
5243 15580 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
5244 15581 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
5245 15582 2.853159 TGAATGCCACGTGTCATCC 58.147 52.632 13.12 0.00 0.00 3.51
5474 15811 3.583806 GCGAGACCTATCCTGATGAATG 58.416 50.000 0.00 0.00 0.00 2.67
5475 15812 2.230025 CGCGAGACCTATCCTGATGAAT 59.770 50.000 0.00 0.00 0.00 2.57
5476 15813 1.609072 CGCGAGACCTATCCTGATGAA 59.391 52.381 0.00 0.00 0.00 2.57
5477 15814 1.239347 CGCGAGACCTATCCTGATGA 58.761 55.000 0.00 0.00 0.00 2.92
5478 15815 0.955178 ACGCGAGACCTATCCTGATG 59.045 55.000 15.93 0.00 0.00 3.07
5479 15816 0.955178 CACGCGAGACCTATCCTGAT 59.045 55.000 15.93 0.00 0.00 2.90
5480 15817 0.107361 TCACGCGAGACCTATCCTGA 60.107 55.000 15.93 0.00 0.00 3.86
5481 15818 0.309302 CTCACGCGAGACCTATCCTG 59.691 60.000 15.93 0.00 42.34 3.86
5482 15819 0.180642 TCTCACGCGAGACCTATCCT 59.819 55.000 15.93 0.00 43.55 3.24
5483 15820 2.704108 TCTCACGCGAGACCTATCC 58.296 57.895 15.93 0.00 43.55 2.59
5490 15827 0.393132 AGATCAGGTCTCACGCGAGA 60.393 55.000 15.93 10.37 46.28 4.04
5491 15828 2.102554 AGATCAGGTCTCACGCGAG 58.897 57.895 15.93 4.59 40.98 5.03
5492 15829 4.320910 AGATCAGGTCTCACGCGA 57.679 55.556 15.93 0.00 28.45 5.87
5518 15855 4.647611 ACTCACCATATGTCACGGAAAAA 58.352 39.130 1.24 0.00 0.00 1.94
5519 15856 4.280436 ACTCACCATATGTCACGGAAAA 57.720 40.909 1.24 0.00 0.00 2.29
5520 15857 3.973206 ACTCACCATATGTCACGGAAA 57.027 42.857 1.24 0.00 0.00 3.13
5521 15858 3.595173 CAACTCACCATATGTCACGGAA 58.405 45.455 1.24 0.00 0.00 4.30
5522 15859 2.676750 GCAACTCACCATATGTCACGGA 60.677 50.000 1.24 0.00 0.00 4.69
5523 15860 1.665679 GCAACTCACCATATGTCACGG 59.334 52.381 1.24 0.00 0.00 4.94
5524 15861 2.345876 TGCAACTCACCATATGTCACG 58.654 47.619 1.24 0.00 0.00 4.35
5525 15862 2.096496 GCTGCAACTCACCATATGTCAC 59.904 50.000 1.24 0.00 0.00 3.67
5526 15863 2.358957 GCTGCAACTCACCATATGTCA 58.641 47.619 1.24 0.00 0.00 3.58
5527 15864 1.328680 CGCTGCAACTCACCATATGTC 59.671 52.381 1.24 0.00 0.00 3.06
5528 15865 1.339055 ACGCTGCAACTCACCATATGT 60.339 47.619 1.24 0.00 0.00 2.29
5529 15866 1.328680 GACGCTGCAACTCACCATATG 59.671 52.381 0.00 0.00 0.00 1.78
5530 15867 1.656652 GACGCTGCAACTCACCATAT 58.343 50.000 0.00 0.00 0.00 1.78
5531 15868 0.735978 CGACGCTGCAACTCACCATA 60.736 55.000 0.00 0.00 0.00 2.74
5532 15869 2.029288 CGACGCTGCAACTCACCAT 61.029 57.895 0.00 0.00 0.00 3.55
5533 15870 2.661537 CGACGCTGCAACTCACCA 60.662 61.111 0.00 0.00 0.00 4.17
5534 15871 4.077188 GCGACGCTGCAACTCACC 62.077 66.667 13.73 0.00 34.15 4.02
5535 15872 3.004734 GAGCGACGCTGCAACTCAC 62.005 63.158 29.85 6.07 39.88 3.51
5536 15873 2.734723 GAGCGACGCTGCAACTCA 60.735 61.111 29.85 0.00 39.88 3.41
5537 15874 3.482783 GGAGCGACGCTGCAACTC 61.483 66.667 32.72 15.41 46.16 3.01
5651 15990 0.390340 CGTCATGTGTGGCTAGCAGT 60.390 55.000 18.24 0.00 0.00 4.40
5670 16899 1.756538 CCTCCTCTCTTCCTTCTGAGC 59.243 57.143 0.00 0.00 0.00 4.26
5733 16962 4.881920 ACCCAATGAAAATTGACGAAAGG 58.118 39.130 0.00 0.00 33.55 3.11
5761 16990 2.238521 GAGAAAAGTTGGCATGGGTGA 58.761 47.619 0.00 0.00 0.00 4.02
5762 16991 1.962807 TGAGAAAAGTTGGCATGGGTG 59.037 47.619 0.00 0.00 0.00 4.61
5763 16992 2.242043 CTGAGAAAAGTTGGCATGGGT 58.758 47.619 0.00 0.00 0.00 4.51
5764 16993 2.242043 ACTGAGAAAAGTTGGCATGGG 58.758 47.619 0.00 0.00 0.00 4.00
5765 16994 3.820467 TGTACTGAGAAAAGTTGGCATGG 59.180 43.478 0.00 0.00 0.00 3.66
5896 17127 9.330063 AGTACCATAAATGTCAATGTGTATGAG 57.670 33.333 0.00 0.00 0.00 2.90
6059 17297 6.096036 TGCCATTAAAATAACGTTGACCATG 58.904 36.000 11.99 5.66 0.00 3.66
6159 17397 8.800231 TGTGTATGAAACAAAATGTTGATCAG 57.200 30.769 1.62 0.00 40.14 2.90
6816 18464 2.348888 CGGAGGGAGTAGGTTGCGT 61.349 63.158 0.00 0.00 0.00 5.24
6827 18475 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
6828 18476 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
6829 18477 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
6830 18478 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
6831 18479 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
6832 18480 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
6833 18481 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
6834 18482 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
6835 18483 4.556104 GCTAGATGTACACTTATTCGCGGA 60.556 45.833 6.13 0.00 0.00 5.54
6836 18484 3.669122 GCTAGATGTACACTTATTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
6837 18485 4.537965 AGCTAGATGTACACTTATTCGCG 58.462 43.478 0.00 0.00 0.00 5.87
6838 18486 6.830114 AAAGCTAGATGTACACTTATTCGC 57.170 37.500 0.00 0.00 0.00 4.70
6940 18588 9.872757 GATTCGTTTTGAAGTGTACTTTGATAA 57.127 29.630 0.00 0.00 40.65 1.75
6941 18589 9.268268 AGATTCGTTTTGAAGTGTACTTTGATA 57.732 29.630 0.00 0.00 40.65 2.15
6942 18590 8.154649 AGATTCGTTTTGAAGTGTACTTTGAT 57.845 30.769 0.00 0.00 40.65 2.57
6943 18591 7.548196 AGATTCGTTTTGAAGTGTACTTTGA 57.452 32.000 0.00 0.00 40.65 2.69
6944 18592 8.548721 ACTAGATTCGTTTTGAAGTGTACTTTG 58.451 33.333 0.00 0.00 40.65 2.77
6945 18593 8.548721 CACTAGATTCGTTTTGAAGTGTACTTT 58.451 33.333 0.00 0.00 40.65 2.66
6946 18594 7.924412 TCACTAGATTCGTTTTGAAGTGTACTT 59.076 33.333 0.00 0.00 40.65 2.24
6947 18595 7.431249 TCACTAGATTCGTTTTGAAGTGTACT 58.569 34.615 0.00 0.00 40.65 2.73
6948 18596 7.633361 TCACTAGATTCGTTTTGAAGTGTAC 57.367 36.000 0.00 0.00 40.65 2.90
6949 18597 8.827177 AATCACTAGATTCGTTTTGAAGTGTA 57.173 30.769 0.00 0.00 40.39 2.90
6950 18598 7.730364 AATCACTAGATTCGTTTTGAAGTGT 57.270 32.000 0.00 0.00 40.39 3.55
6963 18611 7.118723 TGGCACCAAATTAGAATCACTAGATT 58.881 34.615 0.00 0.00 46.85 2.40
6964 18612 6.662755 TGGCACCAAATTAGAATCACTAGAT 58.337 36.000 0.00 0.00 35.53 1.98
6965 18613 6.061022 TGGCACCAAATTAGAATCACTAGA 57.939 37.500 0.00 0.00 32.30 2.43
6966 18614 6.949352 ATGGCACCAAATTAGAATCACTAG 57.051 37.500 0.00 0.00 32.30 2.57
6967 18615 8.815565 TTTATGGCACCAAATTAGAATCACTA 57.184 30.769 0.00 0.00 0.00 2.74
6968 18616 7.716799 TTTATGGCACCAAATTAGAATCACT 57.283 32.000 0.00 0.00 0.00 3.41
6969 18617 7.042523 GCATTTATGGCACCAAATTAGAATCAC 60.043 37.037 6.24 0.00 0.00 3.06
6970 18618 6.985645 GCATTTATGGCACCAAATTAGAATCA 59.014 34.615 6.24 0.00 0.00 2.57
6971 18619 7.212274 AGCATTTATGGCACCAAATTAGAATC 58.788 34.615 6.24 0.00 0.00 2.52
6972 18620 7.128234 AGCATTTATGGCACCAAATTAGAAT 57.872 32.000 6.24 0.00 0.00 2.40
6973 18621 6.543430 AGCATTTATGGCACCAAATTAGAA 57.457 33.333 6.24 0.00 0.00 2.10
6974 18622 6.543430 AAGCATTTATGGCACCAAATTAGA 57.457 33.333 6.24 0.00 0.00 2.10
6975 18623 7.614124 AAAAGCATTTATGGCACCAAATTAG 57.386 32.000 6.24 0.00 37.28 1.73
6976 18624 8.317679 ACTAAAAGCATTTATGGCACCAAATTA 58.682 29.630 6.24 0.00 37.28 1.40
6977 18625 7.167535 ACTAAAAGCATTTATGGCACCAAATT 58.832 30.769 6.24 0.00 37.28 1.82
6978 18626 6.710278 ACTAAAAGCATTTATGGCACCAAAT 58.290 32.000 0.00 0.00 37.28 2.32
6979 18627 6.107901 ACTAAAAGCATTTATGGCACCAAA 57.892 33.333 0.00 0.00 37.28 3.28
6980 18628 5.736951 ACTAAAAGCATTTATGGCACCAA 57.263 34.783 0.00 0.00 37.28 3.67
6981 18629 5.736951 AACTAAAAGCATTTATGGCACCA 57.263 34.783 0.00 0.00 37.28 4.17
6982 18630 7.433708 AAAAACTAAAAGCATTTATGGCACC 57.566 32.000 0.00 0.00 37.28 5.01
7003 18651 6.192044 ACTTTGACCACCTTTCTAGGAAAAA 58.808 36.000 0.00 0.00 45.05 1.94
7004 18652 5.762279 ACTTTGACCACCTTTCTAGGAAAA 58.238 37.500 0.00 0.00 45.05 2.29
7005 18653 5.382664 ACTTTGACCACCTTTCTAGGAAA 57.617 39.130 0.00 0.00 45.05 3.13
7006 18654 5.382664 AACTTTGACCACCTTTCTAGGAA 57.617 39.130 0.00 0.00 45.05 3.36
7007 18655 5.382664 AAACTTTGACCACCTTTCTAGGA 57.617 39.130 0.00 0.00 45.05 2.94
7009 18657 9.297586 GTTTTAAAACTTTGACCACCTTTCTAG 57.702 33.333 21.27 0.00 36.03 2.43
7010 18658 9.027202 AGTTTTAAAACTTTGACCACCTTTCTA 57.973 29.630 24.66 0.00 46.52 2.10
7011 18659 7.903145 AGTTTTAAAACTTTGACCACCTTTCT 58.097 30.769 24.66 0.83 46.52 2.52
7046 18694 9.953825 CGAATAAGTGTACATCTAGTTTTTGTC 57.046 33.333 0.00 0.00 0.00 3.18
7047 18695 8.440833 GCGAATAAGTGTACATCTAGTTTTTGT 58.559 33.333 0.00 0.00 0.00 2.83
7048 18696 7.630987 CGCGAATAAGTGTACATCTAGTTTTTG 59.369 37.037 0.00 0.00 0.00 2.44
7049 18697 7.543172 TCGCGAATAAGTGTACATCTAGTTTTT 59.457 33.333 6.20 0.00 0.00 1.94
7050 18698 7.031372 TCGCGAATAAGTGTACATCTAGTTTT 58.969 34.615 6.20 0.00 0.00 2.43
7051 18699 6.558009 TCGCGAATAAGTGTACATCTAGTTT 58.442 36.000 6.20 0.00 0.00 2.66
7052 18700 6.127810 TCGCGAATAAGTGTACATCTAGTT 57.872 37.500 6.20 0.00 0.00 2.24
7053 18701 5.746307 TCGCGAATAAGTGTACATCTAGT 57.254 39.130 6.20 0.00 0.00 2.57
7054 18702 5.113678 CGTTCGCGAATAAGTGTACATCTAG 59.886 44.000 26.23 0.00 44.71 2.43
7055 18703 4.965762 CGTTCGCGAATAAGTGTACATCTA 59.034 41.667 26.23 0.00 44.71 1.98
7056 18704 3.789756 CGTTCGCGAATAAGTGTACATCT 59.210 43.478 26.23 0.00 44.71 2.90
7057 18705 3.061403 CCGTTCGCGAATAAGTGTACATC 60.061 47.826 26.23 6.22 44.71 3.06
7058 18706 2.855963 CCGTTCGCGAATAAGTGTACAT 59.144 45.455 26.23 0.00 44.71 2.29
7059 18707 2.095314 TCCGTTCGCGAATAAGTGTACA 60.095 45.455 26.23 0.00 44.71 2.90
7060 18708 2.518949 TCCGTTCGCGAATAAGTGTAC 58.481 47.619 26.23 9.11 44.71 2.90
7061 18709 2.478370 CCTCCGTTCGCGAATAAGTGTA 60.478 50.000 26.23 5.89 44.71 2.90
7062 18710 1.625616 CTCCGTTCGCGAATAAGTGT 58.374 50.000 26.23 0.00 44.71 3.55
7063 18711 0.921347 CCTCCGTTCGCGAATAAGTG 59.079 55.000 26.23 15.92 44.71 3.16
7064 18712 0.813184 TCCTCCGTTCGCGAATAAGT 59.187 50.000 26.23 0.00 44.71 2.24
7065 18713 3.635433 TCCTCCGTTCGCGAATAAG 57.365 52.632 26.23 20.31 44.71 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.