Multiple sequence alignment - TraesCS1A01G064000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G064000 chr1A 100.000 6031 0 0 967 6997 45543088 45549118 0.000000e+00 11138.0
1 TraesCS1A01G064000 chr1A 100.000 463 0 0 1 463 45542122 45542584 0.000000e+00 856.0
2 TraesCS1A01G064000 chr1A 90.196 51 5 0 6945 6995 557879839 557879889 4.530000e-07 67.6
3 TraesCS1A01G064000 chr1D 94.243 3109 102 29 3808 6878 45488689 45491758 0.000000e+00 4678.0
4 TraesCS1A01G064000 chr1D 92.449 2887 135 36 967 3807 45485781 45488630 0.000000e+00 4047.0
5 TraesCS1A01G064000 chr1D 82.535 355 12 18 119 435 45485119 45485461 4.160000e-67 267.0
6 TraesCS1A01G064000 chr1B 92.224 3048 162 36 3808 6822 65351125 65354130 0.000000e+00 4246.0
7 TraesCS1A01G064000 chr1B 92.860 2871 139 28 967 3803 65348217 65351055 0.000000e+00 4106.0
8 TraesCS1A01G064000 chr1B 82.824 425 26 23 75 463 65347500 65347913 3.130000e-88 337.0
9 TraesCS1A01G064000 chr3D 86.224 196 27 0 1415 1610 31443183 31443378 5.500000e-51 213.0
10 TraesCS1A01G064000 chr3A 85.075 201 26 3 1415 1613 51756482 51756284 1.190000e-47 202.0
11 TraesCS1A01G064000 chr4B 92.453 53 4 0 1415 1467 80002116 80002168 7.530000e-10 76.8
12 TraesCS1A01G064000 chr7B 92.453 53 2 2 6943 6995 734427909 734427959 2.710000e-09 75.0
13 TraesCS1A01G064000 chr6B 90.196 51 4 1 6945 6995 54219232 54219281 1.630000e-06 65.8
14 TraesCS1A01G064000 chr6B 91.667 48 3 1 6948 6995 290683644 290683598 1.630000e-06 65.8
15 TraesCS1A01G064000 chr6B 91.667 48 3 1 6948 6995 290705325 290705279 1.630000e-06 65.8
16 TraesCS1A01G064000 chr2A 91.489 47 3 1 6950 6995 94164661 94164615 5.860000e-06 63.9
17 TraesCS1A01G064000 chr2B 85.714 63 4 3 6934 6995 90007357 90007299 2.110000e-05 62.1
18 TraesCS1A01G064000 chr2B 85.000 60 6 3 6936 6995 15622150 15622094 2.730000e-04 58.4
19 TraesCS1A01G064000 chr5D 88.636 44 4 1 6953 6995 422223438 422223395 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G064000 chr1A 45542122 45549118 6996 False 5997.000000 11138 100.000000 1 6997 2 chr1A.!!$F2 6996
1 TraesCS1A01G064000 chr1D 45485119 45491758 6639 False 2997.333333 4678 89.742333 119 6878 3 chr1D.!!$F1 6759
2 TraesCS1A01G064000 chr1B 65347500 65354130 6630 False 2896.333333 4246 89.302667 75 6822 3 chr1B.!!$F1 6747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 383 0.036671 CTCCCGCCCTCTTTAAACGT 60.037 55.000 0.00 0.0 0.00 3.99 F
418 461 0.321653 ACCGAGCAAGGATTCACCAC 60.322 55.000 4.39 0.0 42.04 4.16 F
987 1042 0.618981 GAGGGGTCGGAGGATTTGTT 59.381 55.000 0.00 0.0 0.00 2.83 F
988 1043 1.004394 GAGGGGTCGGAGGATTTGTTT 59.996 52.381 0.00 0.0 0.00 2.83 F
2460 2555 0.390866 CTGTTGGCTCTCGCTGACAT 60.391 55.000 0.00 0.0 33.12 3.06 F
3772 3876 0.448197 TTGTGAAAGTTTGTGCGCGA 59.552 45.000 12.10 0.0 0.00 5.87 F
3774 3878 1.044725 GTGAAAGTTTGTGCGCGATG 58.955 50.000 12.10 0.0 0.00 3.84 F
3785 3893 2.020559 CGCGATGAAGTCTTGCGC 59.979 61.111 0.00 0.0 42.42 6.09 F
5240 5420 2.037902 TGTGGGTTACGATTTCTGCTCA 59.962 45.455 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2395 0.250901 ATCGGAGTGGCTGCAACTTT 60.251 50.000 11.68 0.00 0.00 2.66 R
2308 2396 0.250901 AATCGGAGTGGCTGCAACTT 60.251 50.000 11.68 0.00 0.00 2.66 R
2309 2397 0.613260 TAATCGGAGTGGCTGCAACT 59.387 50.000 9.99 9.99 0.00 3.16 R
2613 2708 0.685458 GGAGTTCAATGGCCATGGCT 60.685 55.000 34.70 15.14 41.60 4.75 R
3803 3911 0.039978 ACGAGTGACGAACAGCTGAG 60.040 55.000 23.35 13.56 45.77 3.35 R
4734 4907 1.001378 GTGTGTGGCCTGATCAACAAC 60.001 52.381 3.32 0.00 0.00 3.32 R
5587 5768 2.066393 TGAGGGATTCGCAGAGGGG 61.066 63.158 3.36 0.00 38.43 4.79 R
5738 5920 8.215050 TCCTGTTGAGTAACCAAAAGAAAGATA 58.785 33.333 0.00 0.00 34.12 1.98 R
6485 6703 0.106769 TGCACAGCTGTTTTCTCCCA 60.107 50.000 18.94 3.07 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.706281 TTCAAGAAATGCTTAATTTTTCGCA 57.294 28.000 0.00 0.00 38.64 5.10
25 26 7.887996 TCAAGAAATGCTTAATTTTTCGCAT 57.112 28.000 0.00 0.00 44.27 4.73
26 27 7.952339 TCAAGAAATGCTTAATTTTTCGCATC 58.048 30.769 0.00 0.00 41.80 3.91
27 28 7.598118 TCAAGAAATGCTTAATTTTTCGCATCA 59.402 29.630 0.00 0.00 41.80 3.07
28 29 8.385111 CAAGAAATGCTTAATTTTTCGCATCAT 58.615 29.630 0.00 0.00 41.80 2.45
29 30 9.585099 AAGAAATGCTTAATTTTTCGCATCATA 57.415 25.926 0.00 0.00 41.80 2.15
30 31 9.023967 AGAAATGCTTAATTTTTCGCATCATAC 57.976 29.630 0.00 0.00 41.80 2.39
31 32 8.931385 AAATGCTTAATTTTTCGCATCATACT 57.069 26.923 0.00 0.00 41.80 2.12
32 33 7.919313 ATGCTTAATTTTTCGCATCATACTG 57.081 32.000 0.00 0.00 38.64 2.74
33 34 6.851609 TGCTTAATTTTTCGCATCATACTGT 58.148 32.000 0.00 0.00 0.00 3.55
34 35 7.980062 TGCTTAATTTTTCGCATCATACTGTA 58.020 30.769 0.00 0.00 0.00 2.74
35 36 8.454894 TGCTTAATTTTTCGCATCATACTGTAA 58.545 29.630 0.00 0.00 0.00 2.41
36 37 9.284594 GCTTAATTTTTCGCATCATACTGTAAA 57.715 29.630 0.00 0.00 0.00 2.01
40 41 9.638239 AATTTTTCGCATCATACTGTAAATGTT 57.362 25.926 12.38 0.00 0.00 2.71
41 42 9.638239 ATTTTTCGCATCATACTGTAAATGTTT 57.362 25.926 12.38 0.00 0.00 2.83
42 43 9.469807 TTTTTCGCATCATACTGTAAATGTTTT 57.530 25.926 12.38 0.00 0.00 2.43
43 44 8.667987 TTTCGCATCATACTGTAAATGTTTTC 57.332 30.769 12.38 0.33 0.00 2.29
44 45 7.371126 TCGCATCATACTGTAAATGTTTTCA 57.629 32.000 12.38 0.00 0.00 2.69
45 46 7.240674 TCGCATCATACTGTAAATGTTTTCAC 58.759 34.615 12.38 0.00 0.00 3.18
46 47 7.020602 CGCATCATACTGTAAATGTTTTCACA 58.979 34.615 12.38 0.00 37.31 3.58
47 48 7.697710 CGCATCATACTGTAAATGTTTTCACAT 59.302 33.333 12.38 0.00 46.34 3.21
51 52 8.172484 TCATACTGTAAATGTTTTCACATACGC 58.828 33.333 0.00 0.00 43.34 4.42
52 53 6.307031 ACTGTAAATGTTTTCACATACGCA 57.693 33.333 0.00 0.00 43.34 5.24
53 54 6.730175 ACTGTAAATGTTTTCACATACGCAA 58.270 32.000 0.00 0.00 43.34 4.85
54 55 7.197017 ACTGTAAATGTTTTCACATACGCAAA 58.803 30.769 0.00 0.00 43.34 3.68
55 56 7.865385 ACTGTAAATGTTTTCACATACGCAAAT 59.135 29.630 0.00 0.00 43.34 2.32
56 57 8.221801 TGTAAATGTTTTCACATACGCAAATC 57.778 30.769 0.00 0.00 43.34 2.17
57 58 7.862873 TGTAAATGTTTTCACATACGCAAATCA 59.137 29.630 0.00 0.00 43.34 2.57
58 59 7.706281 AAATGTTTTCACATACGCAAATCAA 57.294 28.000 0.00 0.00 43.34 2.57
59 60 7.887996 AATGTTTTCACATACGCAAATCAAT 57.112 28.000 0.00 0.00 43.34 2.57
60 61 7.887996 ATGTTTTCACATACGCAAATCAATT 57.112 28.000 0.00 0.00 42.24 2.32
61 62 8.978564 ATGTTTTCACATACGCAAATCAATTA 57.021 26.923 0.00 0.00 42.24 1.40
62 63 8.803201 TGTTTTCACATACGCAAATCAATTAA 57.197 26.923 0.00 0.00 0.00 1.40
63 64 8.695284 TGTTTTCACATACGCAAATCAATTAAC 58.305 29.630 0.00 0.00 0.00 2.01
64 65 8.695284 GTTTTCACATACGCAAATCAATTAACA 58.305 29.630 0.00 0.00 0.00 2.41
65 66 8.978564 TTTCACATACGCAAATCAATTAACAT 57.021 26.923 0.00 0.00 0.00 2.71
66 67 8.978564 TTCACATACGCAAATCAATTAACATT 57.021 26.923 0.00 0.00 0.00 2.71
70 71 9.296400 ACATACGCAAATCAATTAACATTAACC 57.704 29.630 0.00 0.00 0.00 2.85
71 72 9.515020 CATACGCAAATCAATTAACATTAACCT 57.485 29.630 0.00 0.00 0.00 3.50
73 74 8.825667 ACGCAAATCAATTAACATTAACCTTT 57.174 26.923 0.00 0.00 0.00 3.11
74 75 8.707839 ACGCAAATCAATTAACATTAACCTTTG 58.292 29.630 0.00 0.00 0.00 2.77
75 76 8.920665 CGCAAATCAATTAACATTAACCTTTGA 58.079 29.630 0.00 7.27 0.00 2.69
88 89 8.739972 ACATTAACCTTTGAATCACTGTATTCC 58.260 33.333 0.00 0.00 35.40 3.01
89 90 8.739039 CATTAACCTTTGAATCACTGTATTCCA 58.261 33.333 0.00 0.00 35.40 3.53
90 91 8.698973 TTAACCTTTGAATCACTGTATTCCAA 57.301 30.769 0.00 0.00 35.40 3.53
91 92 7.595819 AACCTTTGAATCACTGTATTCCAAA 57.404 32.000 0.00 0.00 35.40 3.28
92 93 7.781324 ACCTTTGAATCACTGTATTCCAAAT 57.219 32.000 0.00 0.00 35.40 2.32
93 94 8.193953 ACCTTTGAATCACTGTATTCCAAATT 57.806 30.769 0.00 0.00 35.40 1.82
94 95 8.090214 ACCTTTGAATCACTGTATTCCAAATTG 58.910 33.333 0.00 0.00 35.40 2.32
95 96 8.306038 CCTTTGAATCACTGTATTCCAAATTGA 58.694 33.333 0.00 0.00 35.40 2.57
96 97 9.350357 CTTTGAATCACTGTATTCCAAATTGAG 57.650 33.333 0.00 0.00 35.40 3.02
103 104 4.006989 TGTATTCCAAATTGAGGGACGTG 58.993 43.478 0.00 0.00 31.59 4.49
121 122 2.035832 CGTGAAAATTCCTGCCCAAACT 59.964 45.455 0.00 0.00 0.00 2.66
200 201 1.287503 GATCTCCGCGATCCCAGAC 59.712 63.158 8.23 0.00 42.24 3.51
201 202 2.148558 GATCTCCGCGATCCCAGACC 62.149 65.000 8.23 0.00 42.24 3.85
202 203 3.917760 CTCCGCGATCCCAGACCC 61.918 72.222 8.23 0.00 0.00 4.46
203 204 4.770362 TCCGCGATCCCAGACCCA 62.770 66.667 8.23 0.00 0.00 4.51
204 205 4.227134 CCGCGATCCCAGACCCAG 62.227 72.222 8.23 0.00 0.00 4.45
205 206 3.147595 CGCGATCCCAGACCCAGA 61.148 66.667 0.00 0.00 0.00 3.86
261 284 3.192422 ACCTCGACAGTGAAAGAGATGAG 59.808 47.826 13.10 0.00 32.84 2.90
340 383 0.036671 CTCCCGCCCTCTTTAAACGT 60.037 55.000 0.00 0.00 0.00 3.99
355 398 2.032071 CGTCACCCTCACCAACCC 59.968 66.667 0.00 0.00 0.00 4.11
418 461 0.321653 ACCGAGCAAGGATTCACCAC 60.322 55.000 4.39 0.00 42.04 4.16
447 502 3.721370 TACCCCCGTCGCTCCTACC 62.721 68.421 0.00 0.00 0.00 3.18
987 1042 0.618981 GAGGGGTCGGAGGATTTGTT 59.381 55.000 0.00 0.00 0.00 2.83
988 1043 1.004394 GAGGGGTCGGAGGATTTGTTT 59.996 52.381 0.00 0.00 0.00 2.83
994 1051 2.621526 GTCGGAGGATTTGTTTGTTGGT 59.378 45.455 0.00 0.00 0.00 3.67
1230 1287 1.056660 CGGGTAATAGGGACCAGCAT 58.943 55.000 0.00 0.00 38.86 3.79
1706 1763 6.915300 CAGATCGAGTGAGTACCAAATCTTAG 59.085 42.308 0.00 0.00 0.00 2.18
1708 1765 6.585695 TCGAGTGAGTACCAAATCTTAGTT 57.414 37.500 0.00 0.00 0.00 2.24
1712 1769 7.221067 CGAGTGAGTACCAAATCTTAGTTCATC 59.779 40.741 0.00 0.00 0.00 2.92
1756 1813 6.528072 CGTTCTGAGCCAAAATCTTAATTTCC 59.472 38.462 0.00 0.00 33.93 3.13
1760 1817 7.888021 TCTGAGCCAAAATCTTAATTTCCACTA 59.112 33.333 0.00 0.00 33.93 2.74
1761 1818 8.055279 TGAGCCAAAATCTTAATTTCCACTAG 57.945 34.615 0.00 0.00 33.93 2.57
1763 1820 9.174166 GAGCCAAAATCTTAATTTCCACTAGTA 57.826 33.333 0.00 0.00 33.93 1.82
1764 1821 9.178758 AGCCAAAATCTTAATTTCCACTAGTAG 57.821 33.333 0.00 0.00 33.93 2.57
1765 1822 7.915923 GCCAAAATCTTAATTTCCACTAGTAGC 59.084 37.037 0.00 0.00 33.93 3.58
1852 1924 1.949257 CACCGTTCTTTCAGGGTGC 59.051 57.895 0.00 0.00 43.77 5.01
1872 1945 7.936301 AGGGTGCTGAATCTATAATTTCTTCTC 59.064 37.037 0.00 0.00 0.00 2.87
1982 2055 7.760340 CCTCCACTTCTCAATTTAGTACACTAC 59.240 40.741 0.00 0.00 0.00 2.73
1985 2058 9.790389 CCACTTCTCAATTTAGTACACTACTAG 57.210 37.037 0.00 0.00 41.84 2.57
2145 2232 1.451067 GCAAATGCAGCTGAGAGACT 58.549 50.000 20.43 0.00 41.59 3.24
2146 2233 1.130749 GCAAATGCAGCTGAGAGACTG 59.869 52.381 20.43 7.22 41.59 3.51
2149 2236 1.264295 ATGCAGCTGAGAGACTGTGA 58.736 50.000 20.43 0.00 36.26 3.58
2169 2256 2.673775 TCTGATGCAAAGGGGTCAAA 57.326 45.000 0.00 0.00 0.00 2.69
2180 2267 5.684813 GCAAAGGGGTCAAATTATTGGATCC 60.685 44.000 4.20 4.20 37.15 3.36
2182 2269 4.546674 AGGGGTCAAATTATTGGATCCAC 58.453 43.478 15.91 4.87 37.15 4.02
2216 2304 4.230502 TCTTTATTCCCTTTCCTCCAGCAT 59.769 41.667 0.00 0.00 0.00 3.79
2218 2306 3.584733 ATTCCCTTTCCTCCAGCATAC 57.415 47.619 0.00 0.00 0.00 2.39
2295 2383 1.756024 CTTACCCCCACAACGACCA 59.244 57.895 0.00 0.00 0.00 4.02
2301 2389 1.036707 CCCCACAACGACCAAATTGT 58.963 50.000 0.00 0.00 39.63 2.71
2307 2395 2.094494 ACAACGACCAAATTGTGTTGCA 60.094 40.909 17.10 0.00 42.68 4.08
2308 2396 2.926200 CAACGACCAAATTGTGTTGCAA 59.074 40.909 0.00 0.00 41.89 4.08
2309 2397 3.238108 ACGACCAAATTGTGTTGCAAA 57.762 38.095 0.00 0.00 40.91 3.68
2310 2398 3.186119 ACGACCAAATTGTGTTGCAAAG 58.814 40.909 0.00 0.00 40.91 2.77
2311 2399 3.186119 CGACCAAATTGTGTTGCAAAGT 58.814 40.909 0.00 0.00 40.91 2.66
2312 2400 3.616379 CGACCAAATTGTGTTGCAAAGTT 59.384 39.130 0.00 0.00 40.91 2.66
2313 2401 4.492247 CGACCAAATTGTGTTGCAAAGTTG 60.492 41.667 0.00 0.96 40.91 3.16
2324 2412 1.283793 CAAAGTTGCAGCCACTCCG 59.716 57.895 0.00 0.00 0.00 4.63
2330 2418 0.613260 TTGCAGCCACTCCGATTAGT 59.387 50.000 0.00 0.00 0.00 2.24
2391 2480 2.026356 TGGGCAAAGCAGAGCTGTATAA 60.026 45.455 0.00 0.00 39.62 0.98
2460 2555 0.390866 CTGTTGGCTCTCGCTGACAT 60.391 55.000 0.00 0.00 33.12 3.06
2488 2583 0.535797 GCTCCGGCACTAACCTAACT 59.464 55.000 0.00 0.00 38.54 2.24
2522 2617 5.199723 TGAATGGACCTAAAGCATGCATTA 58.800 37.500 21.98 17.63 34.91 1.90
2530 2625 6.934056 ACCTAAAGCATGCATTAAATGTTGA 58.066 32.000 21.98 0.00 0.00 3.18
2581 2676 8.954950 TGGAAGAAATTTGCTAAAAATGTTGA 57.045 26.923 0.00 0.00 0.00 3.18
2613 2708 9.331282 GGTAGAAGATAGTAGTAACCGTTAGAA 57.669 37.037 0.00 0.00 0.00 2.10
2674 2769 3.494048 CCTGTTGCTTTCTCTGACTGACT 60.494 47.826 0.00 0.00 0.00 3.41
2705 2800 1.608542 GCCATTTGAAATGCACAGCCA 60.609 47.619 12.26 0.00 0.00 4.75
2729 2824 0.605319 TGCCTACCGTTTTGGAGCAG 60.605 55.000 0.00 0.00 42.00 4.24
2778 2873 2.038820 TGTTCATGGAGACTGCACATGA 59.961 45.455 11.68 11.68 46.49 3.07
2780 2875 1.208776 TCATGGAGACTGCACATGAGG 59.791 52.381 11.68 0.00 44.19 3.86
2781 2876 0.545171 ATGGAGACTGCACATGAGGG 59.455 55.000 0.00 0.00 0.00 4.30
2787 2882 3.378512 AGACTGCACATGAGGGATTAGA 58.621 45.455 0.00 0.00 0.00 2.10
2869 2964 2.418368 TGGTGCCTAACATGACCATC 57.582 50.000 0.00 0.00 33.44 3.51
2877 2972 3.891366 CCTAACATGACCATCCATTTCCC 59.109 47.826 0.00 0.00 0.00 3.97
2963 3059 1.595794 TCAACGTTTGCTTTCTCCGAC 59.404 47.619 0.00 0.00 0.00 4.79
3006 3102 7.658167 TCAAACATACCGTCTTTGTTCTATCAA 59.342 33.333 0.00 0.00 32.66 2.57
3028 3124 2.808906 AGGCCTAACATTTGACCTCC 57.191 50.000 1.29 0.00 0.00 4.30
3029 3125 1.992557 AGGCCTAACATTTGACCTCCA 59.007 47.619 1.29 0.00 0.00 3.86
3035 3131 6.405842 GGCCTAACATTTGACCTCCAATTTAG 60.406 42.308 0.00 0.00 34.23 1.85
3038 3134 5.904362 ACATTTGACCTCCAATTTAGCTC 57.096 39.130 0.00 0.00 34.23 4.09
3041 3137 5.964958 TTTGACCTCCAATTTAGCTCTTG 57.035 39.130 0.00 0.00 34.23 3.02
3060 3156 1.188863 GCTCATCCAGCCAAACCATT 58.811 50.000 0.00 0.00 43.17 3.16
3096 3192 5.779771 TGTAAATCAAATCCTTCCAAGGCTT 59.220 36.000 0.00 0.00 46.06 4.35
3103 3199 5.984695 AATCCTTCCAAGGCTTTTACTTC 57.015 39.130 0.00 0.00 46.06 3.01
3105 3201 5.836024 TCCTTCCAAGGCTTTTACTTCTA 57.164 39.130 0.00 0.00 46.06 2.10
3110 3206 9.020731 CCTTCCAAGGCTTTTACTTCTAAAATA 57.979 33.333 0.00 0.00 39.76 1.40
3138 3237 6.370994 AGCATTCTGACTTTCATGAGTACTTG 59.629 38.462 0.00 0.00 0.00 3.16
3383 3487 6.601613 CCAGCCCACATAGTTTTTACTATTCA 59.398 38.462 0.00 0.00 31.09 2.57
3421 3525 2.601367 GTGCACATGTGGCCCCTT 60.601 61.111 26.55 0.00 0.00 3.95
3422 3526 2.601067 TGCACATGTGGCCCCTTG 60.601 61.111 26.55 0.00 0.00 3.61
3423 3527 2.601367 GCACATGTGGCCCCTTGT 60.601 61.111 26.55 0.00 0.00 3.16
3424 3528 2.934570 GCACATGTGGCCCCTTGTG 61.935 63.158 26.55 24.12 41.80 3.33
3532 3636 4.152402 CAGAATTTACCTGTTCAGTCACCG 59.848 45.833 0.00 0.00 0.00 4.94
3549 3653 3.991773 TCACCGCAAATGAAGTACAGTAC 59.008 43.478 2.05 2.05 0.00 2.73
3566 3670 2.162681 GTACAGTCTGGCTTTGGCATT 58.837 47.619 4.53 0.00 40.87 3.56
3616 3720 5.005094 CCCGTGTTTAACTTGGGATTAGAA 58.995 41.667 16.53 0.00 42.77 2.10
3709 3813 7.057894 TGGACAAGTGTACTTAACCTGAATTT 58.942 34.615 15.28 0.00 34.28 1.82
3733 3837 6.693315 AGTACATTGTTTGCAGTAGTGTTT 57.307 33.333 0.00 0.00 0.00 2.83
3734 3838 6.494842 AGTACATTGTTTGCAGTAGTGTTTG 58.505 36.000 0.00 0.00 0.00 2.93
3735 3839 5.574891 ACATTGTTTGCAGTAGTGTTTGA 57.425 34.783 0.00 0.00 0.00 2.69
3736 3840 5.339990 ACATTGTTTGCAGTAGTGTTTGAC 58.660 37.500 0.00 0.00 0.00 3.18
3737 3841 4.364415 TTGTTTGCAGTAGTGTTTGACC 57.636 40.909 0.00 0.00 0.00 4.02
3769 3873 2.191802 TGCATTGTGAAAGTTTGTGCG 58.808 42.857 0.00 0.00 34.06 5.34
3771 3875 1.187704 CATTGTGAAAGTTTGTGCGCG 59.812 47.619 0.00 0.00 0.00 6.86
3772 3876 0.448197 TTGTGAAAGTTTGTGCGCGA 59.552 45.000 12.10 0.00 0.00 5.87
3774 3878 1.044725 GTGAAAGTTTGTGCGCGATG 58.955 50.000 12.10 0.00 0.00 3.84
3785 3893 2.020559 CGCGATGAAGTCTTGCGC 59.979 61.111 0.00 0.00 42.42 6.09
3810 3983 2.407090 TGTCAACGATTGTCTCAGCTG 58.593 47.619 7.63 7.63 0.00 4.24
3833 4006 3.112075 CACTCGTCGGCATGCGTT 61.112 61.111 12.44 0.00 0.00 4.84
3902 4075 2.684374 TGCATGCAATAAATCACTCGCT 59.316 40.909 20.30 0.00 0.00 4.93
3943 4116 2.358015 AGTGTCTAGTAGCGTGGAGAC 58.642 52.381 0.00 5.30 39.03 3.36
4207 4380 7.554118 ACCAGTCAAGTTGAGGTTGATATAATG 59.446 37.037 5.62 0.00 36.35 1.90
4208 4381 7.012704 CCAGTCAAGTTGAGGTTGATATAATGG 59.987 40.741 5.62 0.00 36.35 3.16
4229 4402 5.500234 TGGCAGCTAACTCTTGAATTACAT 58.500 37.500 0.00 0.00 0.00 2.29
4231 4404 5.269313 GCAGCTAACTCTTGAATTACATGC 58.731 41.667 0.00 0.00 0.00 4.06
4238 4411 5.706916 ACTCTTGAATTACATGCTTGCAAG 58.293 37.500 22.44 22.44 34.23 4.01
4239 4412 5.242393 ACTCTTGAATTACATGCTTGCAAGT 59.758 36.000 26.55 11.07 34.48 3.16
4245 4418 6.375174 TGAATTACATGCTTGCAAGTGACTAT 59.625 34.615 26.55 11.29 0.00 2.12
4270 4443 9.923143 ATTGGATGATATTTACTTGATGCATTG 57.077 29.630 0.00 0.00 0.00 2.82
4272 4445 9.571816 TGGATGATATTTACTTGATGCATTGTA 57.428 29.630 0.00 2.38 0.00 2.41
4285 4458 6.798482 TGATGCATTGTATTGATGTTCCTTC 58.202 36.000 0.00 0.00 0.00 3.46
4291 4464 7.864379 GCATTGTATTGATGTTCCTTCTAATGG 59.136 37.037 0.00 0.00 0.00 3.16
4425 4598 2.611292 CTCGAGGAACTTCAATGATGGC 59.389 50.000 3.91 0.00 41.55 4.40
4467 4640 7.387948 ACATATAACACTGAGGTTGACTTGAAC 59.612 37.037 0.00 0.00 32.29 3.18
4734 4907 2.981898 TCTCTGATTGGCACATCACAG 58.018 47.619 7.85 7.87 39.30 3.66
4777 4950 7.940137 ACACAACATTTAAGTAATAGGACCACA 59.060 33.333 0.00 0.00 0.00 4.17
5195 5375 9.590451 TGGTACTTTTCAAGGTAATAAGTATCG 57.410 33.333 0.00 0.00 35.95 2.92
5240 5420 2.037902 TGTGGGTTACGATTTCTGCTCA 59.962 45.455 0.00 0.00 0.00 4.26
5252 5432 4.403585 TTTCTGCTCATGATCTCCTCAG 57.596 45.455 0.00 0.00 37.28 3.35
5578 5759 5.563842 GCTGATTGAAACAAGATAACGGAG 58.436 41.667 0.00 0.00 0.00 4.63
5580 5761 4.092821 TGATTGAAACAAGATAACGGAGCG 59.907 41.667 0.00 0.00 0.00 5.03
5587 5768 2.585247 ATAACGGAGCGCTTCGGC 60.585 61.111 38.87 14.37 37.65 5.54
5798 5980 6.926272 CCCAGCTAATAATTCACACTACTCTC 59.074 42.308 0.00 0.00 0.00 3.20
5804 5986 4.457834 AATTCACACTACTCTCTTCCCG 57.542 45.455 0.00 0.00 0.00 5.14
5942 6124 1.223763 GCCTAGTAGCCCCAACACC 59.776 63.158 0.00 0.00 0.00 4.16
5945 6127 1.617233 TAGTAGCCCCAACACCCCC 60.617 63.158 0.00 0.00 0.00 5.40
5947 6129 2.204385 TAGCCCCAACACCCCCAT 60.204 61.111 0.00 0.00 0.00 4.00
6006 6188 0.326713 AAGAAGGTAGGGAGGAGGGC 60.327 60.000 0.00 0.00 0.00 5.19
6011 6193 2.201490 TAGGGAGGAGGGCGATGG 59.799 66.667 0.00 0.00 0.00 3.51
6025 6207 0.460987 CGATGGGACTGAACAGGAGC 60.461 60.000 6.76 0.00 0.00 4.70
6032 6214 3.149196 GGACTGAACAGGAGCAAAATCA 58.851 45.455 6.76 0.00 0.00 2.57
6053 6235 1.009389 CCGCGGAGAAGAACAGTGTC 61.009 60.000 24.07 0.00 0.00 3.67
6055 6237 1.009389 GCGGAGAAGAACAGTGTCGG 61.009 60.000 0.00 0.00 0.00 4.79
6056 6238 0.596577 CGGAGAAGAACAGTGTCGGA 59.403 55.000 0.00 0.00 0.00 4.55
6057 6239 1.000607 CGGAGAAGAACAGTGTCGGAA 60.001 52.381 0.00 0.00 0.00 4.30
6058 6240 2.545113 CGGAGAAGAACAGTGTCGGAAA 60.545 50.000 0.00 0.00 0.00 3.13
6066 6251 3.208747 ACAGTGTCGGAAATGGAGTTT 57.791 42.857 0.00 0.00 0.00 2.66
6095 6280 6.582437 AGTAAATGTGGCGAAAACAAAAAG 57.418 33.333 0.00 0.00 0.00 2.27
6097 6282 3.810310 ATGTGGCGAAAACAAAAAGGA 57.190 38.095 0.00 0.00 0.00 3.36
6388 6597 1.752498 TGATGAATTCACAGCATGGGC 59.248 47.619 11.07 0.00 41.40 5.36
6424 6634 3.853671 CAGCATAAATGAACTGTTTCGCC 59.146 43.478 0.00 0.00 34.04 5.54
6449 6667 6.397272 TGTTTTTCTTTGCTGTTGTTCAGAT 58.603 32.000 0.00 0.00 46.27 2.90
6468 6686 6.913170 TCAGATTTGCTGTAAAATCCAGAAC 58.087 36.000 11.73 0.00 44.29 3.01
6566 6796 3.357021 CGATGAACTGAAATGAATGCGG 58.643 45.455 0.00 0.00 0.00 5.69
6681 6911 1.165907 CCTTTCAAGTGTCGGCAGCA 61.166 55.000 0.00 0.00 0.00 4.41
6727 6957 1.081442 CGACGTGCTGACTGTGCTA 60.081 57.895 0.00 0.00 0.00 3.49
6736 6966 0.322648 TGACTGTGCTATGCTGTGCT 59.677 50.000 0.00 0.00 0.00 4.40
6737 6967 0.725686 GACTGTGCTATGCTGTGCTG 59.274 55.000 0.00 0.00 0.00 4.41
6738 6968 0.035881 ACTGTGCTATGCTGTGCTGT 59.964 50.000 0.00 0.00 0.00 4.40
6739 6969 0.446616 CTGTGCTATGCTGTGCTGTG 59.553 55.000 0.00 0.00 0.00 3.66
6740 6970 1.136147 GTGCTATGCTGTGCTGTGC 59.864 57.895 0.00 0.00 0.00 4.57
6741 6971 1.002990 TGCTATGCTGTGCTGTGCT 60.003 52.632 0.00 0.00 0.00 4.40
6742 6972 1.303091 TGCTATGCTGTGCTGTGCTG 61.303 55.000 0.00 0.00 0.00 4.41
6743 6973 1.303799 GCTATGCTGTGCTGTGCTGT 61.304 55.000 0.00 0.00 0.00 4.40
6744 6974 0.446616 CTATGCTGTGCTGTGCTGTG 59.553 55.000 0.00 0.00 0.00 3.66
6745 6975 1.579964 TATGCTGTGCTGTGCTGTGC 61.580 55.000 0.00 0.00 0.00 4.57
6746 6976 3.285215 GCTGTGCTGTGCTGTGCT 61.285 61.111 0.00 0.00 0.00 4.40
6747 6977 2.637589 CTGTGCTGTGCTGTGCTG 59.362 61.111 0.00 0.00 0.00 4.41
6748 6978 2.124612 TGTGCTGTGCTGTGCTGT 60.125 55.556 0.00 0.00 0.00 4.40
6777 7007 1.528309 CGTTGTGGGTGGGCTTTCT 60.528 57.895 0.00 0.00 0.00 2.52
6780 7010 0.467290 TTGTGGGTGGGCTTTCTGAC 60.467 55.000 0.00 0.00 0.00 3.51
6832 7067 3.056678 TGTGAAATGAAATGATGCCGCTT 60.057 39.130 0.00 0.00 0.00 4.68
6858 7093 1.487231 CTCGAACGCACAGGTTTCG 59.513 57.895 0.00 0.00 0.00 3.46
6862 7097 1.738432 GAACGCACAGGTTTCGAAAC 58.262 50.000 28.83 28.83 38.17 2.78
6863 7098 0.027063 AACGCACAGGTTTCGAAACG 59.973 50.000 29.23 20.91 39.77 3.60
6864 7099 1.721133 CGCACAGGTTTCGAAACGC 60.721 57.895 29.23 25.02 39.77 4.84
6878 7113 0.471022 AAACGCCCCCTTTGGTTCAT 60.471 50.000 0.00 0.00 0.00 2.57
6879 7114 1.184970 AACGCCCCCTTTGGTTCATG 61.185 55.000 0.00 0.00 0.00 3.07
6880 7115 1.606313 CGCCCCCTTTGGTTCATGT 60.606 57.895 0.00 0.00 0.00 3.21
6881 7116 1.184970 CGCCCCCTTTGGTTCATGTT 61.185 55.000 0.00 0.00 0.00 2.71
6882 7117 1.055849 GCCCCCTTTGGTTCATGTTT 58.944 50.000 0.00 0.00 0.00 2.83
6883 7118 1.419762 GCCCCCTTTGGTTCATGTTTT 59.580 47.619 0.00 0.00 0.00 2.43
6884 7119 2.549992 GCCCCCTTTGGTTCATGTTTTC 60.550 50.000 0.00 0.00 0.00 2.29
6885 7120 2.038426 CCCCCTTTGGTTCATGTTTTCC 59.962 50.000 0.00 0.00 0.00 3.13
6886 7121 2.972021 CCCCTTTGGTTCATGTTTTCCT 59.028 45.455 0.00 0.00 0.00 3.36
6887 7122 4.156477 CCCCTTTGGTTCATGTTTTCCTA 58.844 43.478 0.00 0.00 0.00 2.94
6888 7123 4.220602 CCCCTTTGGTTCATGTTTTCCTAG 59.779 45.833 0.00 0.00 0.00 3.02
6889 7124 4.832823 CCCTTTGGTTCATGTTTTCCTAGT 59.167 41.667 0.00 0.00 0.00 2.57
6890 7125 6.007703 CCCTTTGGTTCATGTTTTCCTAGTA 58.992 40.000 0.00 0.00 0.00 1.82
6891 7126 6.151144 CCCTTTGGTTCATGTTTTCCTAGTAG 59.849 42.308 0.00 0.00 0.00 2.57
6892 7127 6.349363 CCTTTGGTTCATGTTTTCCTAGTAGC 60.349 42.308 0.00 0.00 0.00 3.58
6893 7128 5.235850 TGGTTCATGTTTTCCTAGTAGCA 57.764 39.130 0.00 0.00 0.00 3.49
6894 7129 5.626142 TGGTTCATGTTTTCCTAGTAGCAA 58.374 37.500 0.00 0.00 0.00 3.91
6895 7130 6.245408 TGGTTCATGTTTTCCTAGTAGCAAT 58.755 36.000 0.00 0.00 0.00 3.56
6896 7131 6.150976 TGGTTCATGTTTTCCTAGTAGCAATG 59.849 38.462 0.00 0.00 0.00 2.82
6897 7132 6.404734 GGTTCATGTTTTCCTAGTAGCAATGG 60.405 42.308 0.00 0.00 0.00 3.16
6898 7133 6.061022 TCATGTTTTCCTAGTAGCAATGGA 57.939 37.500 0.00 0.00 0.00 3.41
6899 7134 6.115446 TCATGTTTTCCTAGTAGCAATGGAG 58.885 40.000 0.00 0.00 0.00 3.86
6900 7135 4.843728 TGTTTTCCTAGTAGCAATGGAGG 58.156 43.478 0.00 0.00 0.00 4.30
6901 7136 4.534500 TGTTTTCCTAGTAGCAATGGAGGA 59.466 41.667 0.00 0.00 34.46 3.71
6902 7137 5.191722 TGTTTTCCTAGTAGCAATGGAGGAT 59.808 40.000 0.00 0.00 36.22 3.24
6903 7138 5.552870 TTTCCTAGTAGCAATGGAGGATC 57.447 43.478 0.00 0.00 36.22 3.36
6904 7139 4.199002 TCCTAGTAGCAATGGAGGATCA 57.801 45.455 0.00 0.00 36.25 2.92
6905 7140 4.556697 TCCTAGTAGCAATGGAGGATCAA 58.443 43.478 0.00 0.00 36.25 2.57
6906 7141 4.968719 TCCTAGTAGCAATGGAGGATCAAA 59.031 41.667 0.00 0.00 36.25 2.69
6907 7142 5.428457 TCCTAGTAGCAATGGAGGATCAAAA 59.572 40.000 0.00 0.00 36.25 2.44
6908 7143 6.101734 TCCTAGTAGCAATGGAGGATCAAAAT 59.898 38.462 0.00 0.00 36.25 1.82
6909 7144 6.429385 CCTAGTAGCAATGGAGGATCAAAATC 59.571 42.308 0.00 0.00 36.25 2.17
6932 7167 9.479549 AATCCTTAGAAAATATCACATGTTGGT 57.520 29.630 0.00 0.00 0.00 3.67
6934 7169 9.967451 TCCTTAGAAAATATCACATGTTGGTAA 57.033 29.630 0.00 0.00 0.00 2.85
6971 7206 8.905103 ATTTTAAACACAGTAAACACACAGAC 57.095 30.769 0.00 0.00 0.00 3.51
6972 7207 4.593597 AAACACAGTAAACACACAGACG 57.406 40.909 0.00 0.00 0.00 4.18
6973 7208 1.931172 ACACAGTAAACACACAGACGC 59.069 47.619 0.00 0.00 0.00 5.19
6974 7209 2.201732 CACAGTAAACACACAGACGCT 58.798 47.619 0.00 0.00 0.00 5.07
6975 7210 2.218759 CACAGTAAACACACAGACGCTC 59.781 50.000 0.00 0.00 0.00 5.03
6976 7211 2.159156 ACAGTAAACACACAGACGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
6977 7212 3.059884 CAGTAAACACACAGACGCTCAT 58.940 45.455 0.00 0.00 0.00 2.90
6978 7213 4.234574 CAGTAAACACACAGACGCTCATA 58.765 43.478 0.00 0.00 0.00 2.15
6979 7214 4.090066 CAGTAAACACACAGACGCTCATAC 59.910 45.833 0.00 0.00 0.00 2.39
6980 7215 2.812358 AACACACAGACGCTCATACA 57.188 45.000 0.00 0.00 0.00 2.29
6981 7216 3.319137 AACACACAGACGCTCATACAT 57.681 42.857 0.00 0.00 0.00 2.29
6982 7217 4.450082 AACACACAGACGCTCATACATA 57.550 40.909 0.00 0.00 0.00 2.29
6983 7218 3.770666 ACACACAGACGCTCATACATAC 58.229 45.455 0.00 0.00 0.00 2.39
6984 7219 2.783832 CACACAGACGCTCATACATACG 59.216 50.000 0.00 0.00 0.00 3.06
6985 7220 1.781429 CACAGACGCTCATACATACGC 59.219 52.381 0.00 0.00 0.00 4.42
6986 7221 1.404035 ACAGACGCTCATACATACGCA 59.596 47.619 0.00 0.00 0.00 5.24
6987 7222 1.781429 CAGACGCTCATACATACGCAC 59.219 52.381 0.00 0.00 0.00 5.34
6988 7223 1.404035 AGACGCTCATACATACGCACA 59.596 47.619 0.00 0.00 0.00 4.57
6989 7224 2.034685 AGACGCTCATACATACGCACAT 59.965 45.455 0.00 0.00 0.00 3.21
6990 7225 3.252458 AGACGCTCATACATACGCACATA 59.748 43.478 0.00 0.00 0.00 2.29
6991 7226 3.305964 ACGCTCATACATACGCACATAC 58.694 45.455 0.00 0.00 0.00 2.39
6992 7227 3.243267 ACGCTCATACATACGCACATACA 60.243 43.478 0.00 0.00 0.00 2.29
6993 7228 3.119628 CGCTCATACATACGCACATACAC 59.880 47.826 0.00 0.00 0.00 2.90
6994 7229 4.299155 GCTCATACATACGCACATACACT 58.701 43.478 0.00 0.00 0.00 3.55
6995 7230 5.458015 GCTCATACATACGCACATACACTA 58.542 41.667 0.00 0.00 0.00 2.74
6996 7231 6.093404 GCTCATACATACGCACATACACTAT 58.907 40.000 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.706281 TGCGAAAAATTAAGCATTTCTTGAA 57.294 28.000 0.00 0.00 33.60 2.69
1 2 7.887996 ATGCGAAAAATTAAGCATTTCTTGA 57.112 28.000 0.00 0.00 46.75 3.02
10 11 8.835467 TTACAGTATGATGCGAAAAATTAAGC 57.165 30.769 0.00 0.00 39.69 3.09
14 15 9.638239 AACATTTACAGTATGATGCGAAAAATT 57.362 25.926 0.00 0.00 39.69 1.82
16 17 9.469807 AAAACATTTACAGTATGATGCGAAAAA 57.530 25.926 0.00 0.00 39.69 1.94
17 18 9.123709 GAAAACATTTACAGTATGATGCGAAAA 57.876 29.630 0.00 0.00 39.69 2.29
18 19 8.293157 TGAAAACATTTACAGTATGATGCGAAA 58.707 29.630 0.00 0.00 39.69 3.46
19 20 7.748683 GTGAAAACATTTACAGTATGATGCGAA 59.251 33.333 0.00 0.00 39.69 4.70
20 21 7.095017 TGTGAAAACATTTACAGTATGATGCGA 60.095 33.333 0.00 0.00 39.69 5.10
21 22 7.020602 TGTGAAAACATTTACAGTATGATGCG 58.979 34.615 0.00 0.00 39.69 4.73
22 23 8.915871 ATGTGAAAACATTTACAGTATGATGC 57.084 30.769 0.00 0.00 39.69 3.91
25 26 8.172484 GCGTATGTGAAAACATTTACAGTATGA 58.828 33.333 0.00 0.00 39.69 2.15
26 27 7.960195 TGCGTATGTGAAAACATTTACAGTATG 59.040 33.333 0.00 0.00 46.00 2.39
27 28 8.035165 TGCGTATGTGAAAACATTTACAGTAT 57.965 30.769 0.00 0.00 0.00 2.12
28 29 7.422878 TGCGTATGTGAAAACATTTACAGTA 57.577 32.000 0.00 0.00 0.00 2.74
29 30 6.307031 TGCGTATGTGAAAACATTTACAGT 57.693 33.333 0.00 0.00 0.00 3.55
30 31 7.616103 TTTGCGTATGTGAAAACATTTACAG 57.384 32.000 0.00 0.00 0.00 2.74
31 32 7.862873 TGATTTGCGTATGTGAAAACATTTACA 59.137 29.630 0.00 0.00 0.00 2.41
32 33 8.221801 TGATTTGCGTATGTGAAAACATTTAC 57.778 30.769 0.00 0.00 0.00 2.01
33 34 8.803201 TTGATTTGCGTATGTGAAAACATTTA 57.197 26.923 0.00 0.00 0.00 1.40
34 35 7.706281 TTGATTTGCGTATGTGAAAACATTT 57.294 28.000 0.00 0.00 0.00 2.32
35 36 7.887996 ATTGATTTGCGTATGTGAAAACATT 57.112 28.000 0.00 0.00 0.00 2.71
36 37 7.887996 AATTGATTTGCGTATGTGAAAACAT 57.112 28.000 0.00 0.00 0.00 2.71
37 38 8.695284 GTTAATTGATTTGCGTATGTGAAAACA 58.305 29.630 0.00 0.00 0.00 2.83
38 39 8.695284 TGTTAATTGATTTGCGTATGTGAAAAC 58.305 29.630 0.00 0.00 0.00 2.43
39 40 8.803201 TGTTAATTGATTTGCGTATGTGAAAA 57.197 26.923 0.00 0.00 0.00 2.29
40 41 8.978564 ATGTTAATTGATTTGCGTATGTGAAA 57.021 26.923 0.00 0.00 0.00 2.69
41 42 8.978564 AATGTTAATTGATTTGCGTATGTGAA 57.021 26.923 0.00 0.00 0.00 3.18
44 45 9.296400 GGTTAATGTTAATTGATTTGCGTATGT 57.704 29.630 0.00 0.00 0.00 2.29
45 46 9.515020 AGGTTAATGTTAATTGATTTGCGTATG 57.485 29.630 0.00 0.00 0.00 2.39
47 48 9.915629 AAAGGTTAATGTTAATTGATTTGCGTA 57.084 25.926 0.00 0.00 0.00 4.42
48 49 8.707839 CAAAGGTTAATGTTAATTGATTTGCGT 58.292 29.630 0.00 0.00 0.00 5.24
49 50 8.920665 TCAAAGGTTAATGTTAATTGATTTGCG 58.079 29.630 0.00 0.00 0.00 4.85
62 63 8.739972 GGAATACAGTGATTCAAAGGTTAATGT 58.260 33.333 0.00 0.00 37.53 2.71
63 64 8.739039 TGGAATACAGTGATTCAAAGGTTAATG 58.261 33.333 0.00 0.00 37.53 1.90
64 65 8.877864 TGGAATACAGTGATTCAAAGGTTAAT 57.122 30.769 0.00 0.00 37.53 1.40
65 66 8.698973 TTGGAATACAGTGATTCAAAGGTTAA 57.301 30.769 0.00 0.00 37.53 2.01
66 67 8.698973 TTTGGAATACAGTGATTCAAAGGTTA 57.301 30.769 0.00 0.00 37.53 2.85
67 68 7.595819 TTTGGAATACAGTGATTCAAAGGTT 57.404 32.000 0.00 0.00 37.53 3.50
68 69 7.781324 ATTTGGAATACAGTGATTCAAAGGT 57.219 32.000 0.00 0.00 37.53 3.50
69 70 8.306038 TCAATTTGGAATACAGTGATTCAAAGG 58.694 33.333 0.00 0.00 37.53 3.11
70 71 9.350357 CTCAATTTGGAATACAGTGATTCAAAG 57.650 33.333 0.00 0.00 37.53 2.77
71 72 8.306038 CCTCAATTTGGAATACAGTGATTCAAA 58.694 33.333 0.00 0.77 37.53 2.69
72 73 7.093814 CCCTCAATTTGGAATACAGTGATTCAA 60.094 37.037 0.00 0.00 37.53 2.69
73 74 6.377996 CCCTCAATTTGGAATACAGTGATTCA 59.622 38.462 0.00 0.00 37.53 2.57
74 75 6.603201 TCCCTCAATTTGGAATACAGTGATTC 59.397 38.462 0.00 2.07 35.45 2.52
75 76 6.378280 GTCCCTCAATTTGGAATACAGTGATT 59.622 38.462 0.00 0.00 31.03 2.57
76 77 5.888161 GTCCCTCAATTTGGAATACAGTGAT 59.112 40.000 0.00 0.00 31.03 3.06
77 78 5.253330 GTCCCTCAATTTGGAATACAGTGA 58.747 41.667 0.00 0.00 31.03 3.41
78 79 4.094887 CGTCCCTCAATTTGGAATACAGTG 59.905 45.833 0.00 0.00 31.03 3.66
79 80 4.261801 CGTCCCTCAATTTGGAATACAGT 58.738 43.478 0.00 0.00 31.03 3.55
80 81 4.094887 CACGTCCCTCAATTTGGAATACAG 59.905 45.833 0.00 0.00 31.03 2.74
81 82 4.006989 CACGTCCCTCAATTTGGAATACA 58.993 43.478 0.00 0.00 31.03 2.29
82 83 4.258543 TCACGTCCCTCAATTTGGAATAC 58.741 43.478 0.00 0.00 31.03 1.89
83 84 4.561500 TCACGTCCCTCAATTTGGAATA 57.438 40.909 0.00 0.00 31.03 1.75
84 85 3.433306 TCACGTCCCTCAATTTGGAAT 57.567 42.857 0.00 0.00 31.03 3.01
85 86 2.940994 TCACGTCCCTCAATTTGGAA 57.059 45.000 0.00 0.00 31.03 3.53
86 87 2.940994 TTCACGTCCCTCAATTTGGA 57.059 45.000 0.00 0.00 0.00 3.53
87 88 4.519540 ATTTTCACGTCCCTCAATTTGG 57.480 40.909 0.00 0.00 0.00 3.28
88 89 4.923281 GGAATTTTCACGTCCCTCAATTTG 59.077 41.667 0.00 0.00 0.00 2.32
89 90 4.832823 AGGAATTTTCACGTCCCTCAATTT 59.167 37.500 0.00 0.00 31.25 1.82
90 91 4.218417 CAGGAATTTTCACGTCCCTCAATT 59.782 41.667 0.00 0.00 31.25 2.32
91 92 3.758554 CAGGAATTTTCACGTCCCTCAAT 59.241 43.478 0.00 0.00 31.25 2.57
92 93 3.146066 CAGGAATTTTCACGTCCCTCAA 58.854 45.455 0.00 0.00 31.25 3.02
93 94 2.778299 CAGGAATTTTCACGTCCCTCA 58.222 47.619 0.00 0.00 31.25 3.86
94 95 1.468914 GCAGGAATTTTCACGTCCCTC 59.531 52.381 0.00 0.00 31.25 4.30
95 96 1.534729 GCAGGAATTTTCACGTCCCT 58.465 50.000 0.00 0.00 31.25 4.20
96 97 0.526211 GGCAGGAATTTTCACGTCCC 59.474 55.000 0.00 0.00 31.25 4.46
103 104 3.044235 CCAGTTTGGGCAGGAATTTTC 57.956 47.619 0.00 0.00 32.67 2.29
200 201 1.030488 CAGACATGCTTGCCTCTGGG 61.030 60.000 10.66 0.00 0.00 4.45
201 202 0.035725 TCAGACATGCTTGCCTCTGG 60.036 55.000 15.78 3.45 30.62 3.86
202 203 1.467734 GTTCAGACATGCTTGCCTCTG 59.532 52.381 11.78 11.78 30.79 3.35
203 204 1.612726 GGTTCAGACATGCTTGCCTCT 60.613 52.381 0.00 0.00 0.00 3.69
204 205 0.807496 GGTTCAGACATGCTTGCCTC 59.193 55.000 0.00 0.00 0.00 4.70
205 206 0.957395 CGGTTCAGACATGCTTGCCT 60.957 55.000 0.00 0.00 0.00 4.75
261 284 1.068541 GTTTTCACCTCCGCCATTGAC 60.069 52.381 0.00 0.00 0.00 3.18
340 383 2.457323 GGTGGGTTGGTGAGGGTGA 61.457 63.158 0.00 0.00 0.00 4.02
355 398 4.067913 GCAATGGCGTTGGGGGTG 62.068 66.667 20.28 0.00 38.29 4.61
387 430 2.047844 CTCGGTGGAGCTGTGGTG 60.048 66.667 0.00 0.00 32.61 4.17
395 438 0.250234 TGAATCCTTGCTCGGTGGAG 59.750 55.000 0.00 0.00 43.46 3.86
396 439 0.036388 GTGAATCCTTGCTCGGTGGA 60.036 55.000 0.00 0.00 0.00 4.02
436 491 1.255667 TGGAAGGTGGTAGGAGCGAC 61.256 60.000 0.00 0.00 0.00 5.19
439 494 0.470341 GGATGGAAGGTGGTAGGAGC 59.530 60.000 0.00 0.00 0.00 4.70
987 1042 1.074072 CCCCATGACGGACCAACAA 59.926 57.895 0.00 0.00 36.56 2.83
988 1043 1.843832 TCCCCATGACGGACCAACA 60.844 57.895 0.00 0.00 36.56 3.33
1065 1122 2.435059 GAGAAGTGGAGCACCGCC 60.435 66.667 10.34 0.00 46.81 6.13
1174 1231 4.880537 CTGCTCCGCCGCGAGAAT 62.881 66.667 15.93 0.00 30.97 2.40
1206 1263 1.008079 GTCCCTATTACCCGCGACG 60.008 63.158 8.23 0.00 0.00 5.12
1215 1272 3.519510 GGCTGATATGCTGGTCCCTATTA 59.480 47.826 0.00 0.00 0.00 0.98
1217 1274 1.912043 GGCTGATATGCTGGTCCCTAT 59.088 52.381 0.00 0.00 0.00 2.57
1218 1275 1.132721 AGGCTGATATGCTGGTCCCTA 60.133 52.381 0.00 0.00 0.00 3.53
1706 1763 2.725221 AGCAGAGGGAATGGATGAAC 57.275 50.000 0.00 0.00 0.00 3.18
1708 1765 1.492176 GGAAGCAGAGGGAATGGATGA 59.508 52.381 0.00 0.00 0.00 2.92
1712 1769 1.745141 CGAAGGAAGCAGAGGGAATGG 60.745 57.143 0.00 0.00 0.00 3.16
1756 1813 7.307493 TGTAATTTGCAATCTGCTACTAGTG 57.693 36.000 5.39 0.00 45.31 2.74
1760 1817 7.031372 CACATTGTAATTTGCAATCTGCTACT 58.969 34.615 9.43 0.00 45.31 2.57
1761 1818 6.237648 GCACATTGTAATTTGCAATCTGCTAC 60.238 38.462 23.22 5.19 45.31 3.58
1763 1820 4.628333 GCACATTGTAATTTGCAATCTGCT 59.372 37.500 23.22 0.39 45.31 4.24
1764 1821 4.201744 GGCACATTGTAATTTGCAATCTGC 60.202 41.667 22.76 22.76 42.36 4.26
1765 1822 4.930405 TGGCACATTGTAATTTGCAATCTG 59.070 37.500 15.22 9.67 42.36 2.90
1818 1890 5.294552 AGAACGGTGAAAAGAAGAGAAGTTG 59.705 40.000 0.00 0.00 0.00 3.16
1872 1945 7.922811 ACAGCTGTTAAAAATTGAAGAAGAAGG 59.077 33.333 15.25 0.00 0.00 3.46
1985 2058 9.315525 TGCCAAAACCTTTAAAATTAGTTGTAC 57.684 29.630 0.00 0.00 0.00 2.90
1989 2062 6.485313 GGCTGCCAAAACCTTTAAAATTAGTT 59.515 34.615 15.17 0.00 0.00 2.24
2145 2232 1.355381 ACCCCTTTGCATCAGATCACA 59.645 47.619 0.00 0.00 0.00 3.58
2146 2233 2.019984 GACCCCTTTGCATCAGATCAC 58.980 52.381 0.00 0.00 0.00 3.06
2149 2236 2.905415 TTGACCCCTTTGCATCAGAT 57.095 45.000 0.00 0.00 0.00 2.90
2169 2256 6.848562 AGAGGTAAAGGTGGATCCAATAAT 57.151 37.500 18.20 6.31 39.02 1.28
2180 2267 6.722328 AGGGAATAAAGAAGAGGTAAAGGTG 58.278 40.000 0.00 0.00 0.00 4.00
2182 2269 7.339721 GGAAAGGGAATAAAGAAGAGGTAAAGG 59.660 40.741 0.00 0.00 0.00 3.11
2216 2304 3.333029 TGCAACAGCAGAAGCATAGTA 57.667 42.857 0.00 0.00 45.49 1.82
2307 2395 0.250901 ATCGGAGTGGCTGCAACTTT 60.251 50.000 11.68 0.00 0.00 2.66
2308 2396 0.250901 AATCGGAGTGGCTGCAACTT 60.251 50.000 11.68 0.00 0.00 2.66
2309 2397 0.613260 TAATCGGAGTGGCTGCAACT 59.387 50.000 9.99 9.99 0.00 3.16
2310 2398 1.009829 CTAATCGGAGTGGCTGCAAC 58.990 55.000 0.00 0.00 0.00 4.17
2311 2399 0.613260 ACTAATCGGAGTGGCTGCAA 59.387 50.000 0.50 0.00 0.00 4.08
2312 2400 1.480789 TACTAATCGGAGTGGCTGCA 58.519 50.000 0.50 0.00 0.00 4.41
2313 2401 2.821991 ATACTAATCGGAGTGGCTGC 57.178 50.000 0.00 0.00 0.00 5.25
2316 2404 8.828688 AATTAAACTATACTAATCGGAGTGGC 57.171 34.615 0.00 0.00 0.00 5.01
2400 2489 8.983307 ACTGTTAAAGTACTAATCAGTAGTGC 57.017 34.615 15.29 0.00 43.24 4.40
2404 2493 8.689972 GCCCTACTGTTAAAGTACTAATCAGTA 58.310 37.037 18.72 18.72 40.56 2.74
2471 2566 3.577848 TGTTTAGTTAGGTTAGTGCCGGA 59.422 43.478 5.05 0.00 0.00 5.14
2488 2583 7.523052 GCTTTAGGTCCATTCAATGTGTGTTTA 60.523 37.037 0.00 0.00 0.00 2.01
2522 2617 5.014858 AGGAGCATCAACATCTCAACATTT 58.985 37.500 0.00 0.00 36.25 2.32
2530 2625 5.359009 CCAAATGTTAGGAGCATCAACATCT 59.641 40.000 6.49 0.00 40.94 2.90
2581 2676 7.289310 GGTTACTACTATCTTCTACCACCTCT 58.711 42.308 0.00 0.00 0.00 3.69
2613 2708 0.685458 GGAGTTCAATGGCCATGGCT 60.685 55.000 34.70 15.14 41.60 4.75
2705 2800 3.554129 GCTCCAAAACGGTAGGCAAATTT 60.554 43.478 0.00 0.00 35.57 1.82
2778 2873 4.688321 GCAAGAATTCAGGCTCTAATCCCT 60.688 45.833 8.44 0.00 0.00 4.20
2780 2875 4.202441 TGCAAGAATTCAGGCTCTAATCC 58.798 43.478 18.37 0.00 0.00 3.01
2781 2876 5.824904 TTGCAAGAATTCAGGCTCTAATC 57.175 39.130 18.37 0.00 0.00 1.75
2787 2882 4.221262 TGCTTATTTGCAAGAATTCAGGCT 59.779 37.500 18.37 5.31 40.29 4.58
2815 2910 9.893305 CATCTAGTGTCGGTTAAAAGAAAATTT 57.107 29.630 0.00 0.00 0.00 1.82
2816 2911 8.021396 GCATCTAGTGTCGGTTAAAAGAAAATT 58.979 33.333 0.00 0.00 0.00 1.82
2869 2964 1.473434 GGACAGCTACGAGGGAAATGG 60.473 57.143 0.00 0.00 0.00 3.16
2877 2972 4.202161 ACAATATTGGAGGACAGCTACGAG 60.202 45.833 19.37 0.00 0.00 4.18
3006 3102 3.832490 GGAGGTCAAATGTTAGGCCTTTT 59.168 43.478 12.58 1.45 0.00 2.27
3060 3156 7.505585 AGGATTTGATTTACAGTCTCCACAAAA 59.494 33.333 0.00 0.00 31.61 2.44
3105 3201 9.453572 TCATGAAAGTCAGAATGCTACTATTTT 57.546 29.630 0.00 0.00 34.76 1.82
3110 3206 6.047511 ACTCATGAAAGTCAGAATGCTACT 57.952 37.500 0.00 0.00 34.76 2.57
3219 3318 8.785329 TTTTAAAAAGAAAAACACCATGCTCT 57.215 26.923 0.00 0.00 0.00 4.09
3421 3525 1.832167 GCCCCCAGAAAAGCACACA 60.832 57.895 0.00 0.00 0.00 3.72
3422 3526 1.832167 TGCCCCCAGAAAAGCACAC 60.832 57.895 0.00 0.00 0.00 3.82
3423 3527 2.605873 TGCCCCCAGAAAAGCACA 59.394 55.556 0.00 0.00 0.00 4.57
3532 3636 5.120830 CCAGACTGTACTGTACTTCATTTGC 59.879 44.000 17.98 1.20 36.30 3.68
3549 3653 0.245539 CCAATGCCAAAGCCAGACTG 59.754 55.000 0.00 0.00 38.69 3.51
3651 3755 8.283699 AGGCAAACAGTACAAAAGTTTAAGTA 57.716 30.769 0.00 0.00 34.03 2.24
3652 3756 7.165460 AGGCAAACAGTACAAAAGTTTAAGT 57.835 32.000 0.00 0.00 34.03 2.24
3653 3757 9.744468 ATTAGGCAAACAGTACAAAAGTTTAAG 57.256 29.630 0.00 0.00 34.03 1.85
3655 3759 9.522804 CAATTAGGCAAACAGTACAAAAGTTTA 57.477 29.630 0.00 0.00 34.03 2.01
3662 3766 4.513198 GGCAATTAGGCAAACAGTACAA 57.487 40.909 0.00 0.00 43.51 2.41
3709 3813 7.496263 TCAAACACTACTGCAAACAATGTACTA 59.504 33.333 0.00 0.00 0.00 1.82
3733 3837 3.650281 ATGCAATGTATGGTCAGGTCA 57.350 42.857 0.00 0.00 0.00 4.02
3734 3838 3.696051 ACAATGCAATGTATGGTCAGGTC 59.304 43.478 5.37 0.00 0.00 3.85
3735 3839 3.444742 CACAATGCAATGTATGGTCAGGT 59.555 43.478 7.18 0.00 30.84 4.00
3736 3840 3.695556 TCACAATGCAATGTATGGTCAGG 59.304 43.478 7.18 0.00 30.84 3.86
3737 3841 4.968812 TCACAATGCAATGTATGGTCAG 57.031 40.909 7.18 0.00 30.84 3.51
3769 3873 1.346538 GAGCGCAAGACTTCATCGC 59.653 57.895 11.47 14.57 45.34 4.58
3771 3875 1.071605 AACGAGCGCAAGACTTCATC 58.928 50.000 11.47 0.00 43.02 2.92
3772 3876 0.792640 CAACGAGCGCAAGACTTCAT 59.207 50.000 11.47 0.00 43.02 2.57
3774 3878 0.161870 GACAACGAGCGCAAGACTTC 59.838 55.000 11.47 0.00 43.02 3.01
3803 3911 0.039978 ACGAGTGACGAACAGCTGAG 60.040 55.000 23.35 13.56 45.77 3.35
3804 3912 0.040336 GACGAGTGACGAACAGCTGA 60.040 55.000 23.35 0.00 45.77 4.26
3805 3913 1.330779 CGACGAGTGACGAACAGCTG 61.331 60.000 13.48 13.48 45.77 4.24
3806 3914 1.082038 CGACGAGTGACGAACAGCT 60.082 57.895 0.00 0.00 45.77 4.24
3810 3983 1.443872 ATGCCGACGAGTGACGAAC 60.444 57.895 0.00 0.00 45.77 3.95
3833 4006 4.574674 AGACTAAATCATCCACTTGCCA 57.425 40.909 0.00 0.00 0.00 4.92
3943 4116 1.626825 TCTAAAACTTCCTCCCACCCG 59.373 52.381 0.00 0.00 0.00 5.28
4114 4287 2.027385 GCCCAGAATTAGGCTCCAAAG 58.973 52.381 0.00 0.00 46.14 2.77
4115 4288 2.143876 GCCCAGAATTAGGCTCCAAA 57.856 50.000 0.00 0.00 46.14 3.28
4116 4289 3.903208 GCCCAGAATTAGGCTCCAA 57.097 52.632 0.00 0.00 46.14 3.53
4207 4380 5.731686 GCATGTAATTCAAGAGTTAGCTGCC 60.732 44.000 0.00 0.00 0.00 4.85
4208 4381 5.065731 AGCATGTAATTCAAGAGTTAGCTGC 59.934 40.000 0.00 0.00 0.00 5.25
4229 4402 3.138884 TCCAATAGTCACTTGCAAGCA 57.861 42.857 26.27 10.53 0.00 3.91
4231 4404 7.741027 ATATCATCCAATAGTCACTTGCAAG 57.259 36.000 24.84 24.84 0.00 4.01
4245 4418 8.916062 ACAATGCATCAAGTAAATATCATCCAA 58.084 29.630 0.00 0.00 0.00 3.53
4262 4435 7.035840 AGAAGGAACATCAATACAATGCATC 57.964 36.000 0.00 0.00 0.00 3.91
4269 4442 8.106462 TCAACCATTAGAAGGAACATCAATACA 58.894 33.333 0.00 0.00 0.00 2.29
4270 4443 8.506168 TCAACCATTAGAAGGAACATCAATAC 57.494 34.615 0.00 0.00 0.00 1.89
4272 4445 8.421249 TTTCAACCATTAGAAGGAACATCAAT 57.579 30.769 0.00 0.00 0.00 2.57
4273 4446 7.831691 TTTCAACCATTAGAAGGAACATCAA 57.168 32.000 0.00 0.00 0.00 2.57
4285 4458 3.131046 GCCCTGTCCATTTCAACCATTAG 59.869 47.826 0.00 0.00 0.00 1.73
4291 4464 0.958822 AACGCCCTGTCCATTTCAAC 59.041 50.000 0.00 0.00 0.00 3.18
4425 4598 0.250295 ATGTCACTGAACGGGTGGTG 60.250 55.000 0.00 0.00 35.61 4.17
4734 4907 1.001378 GTGTGTGGCCTGATCAACAAC 60.001 52.381 3.32 0.00 0.00 3.32
4777 4950 6.645415 GGTATAGATAAGTAGTTGCGCAATGT 59.355 38.462 27.79 18.86 0.00 2.71
4821 4994 9.918630 CAAATCTTCTTCAAATTCCACAACTAT 57.081 29.630 0.00 0.00 0.00 2.12
5195 5375 8.512138 ACAACATTACTTAACCATTCAGCTAAC 58.488 33.333 0.00 0.00 0.00 2.34
5240 5420 3.963793 TCAGGGCTGAGGAGATCAT 57.036 52.632 0.00 0.00 37.28 2.45
5252 5432 6.365970 TCAGATAGGAAAATATCTCAGGGC 57.634 41.667 0.00 0.00 39.89 5.19
5265 5445 3.432186 CGGGCAGTGAATTCAGATAGGAA 60.432 47.826 8.80 0.00 0.00 3.36
5587 5768 2.066393 TGAGGGATTCGCAGAGGGG 61.066 63.158 3.36 0.00 38.43 4.79
5738 5920 8.215050 TCCTGTTGAGTAACCAAAAGAAAGATA 58.785 33.333 0.00 0.00 34.12 1.98
5798 5980 0.680921 ACCAATCATGCCACGGGAAG 60.681 55.000 0.00 0.00 0.00 3.46
5804 5986 0.108520 CCTGCAACCAATCATGCCAC 60.109 55.000 0.00 0.00 41.87 5.01
5927 6109 1.617233 GGGGGTGTTGGGGCTACTA 60.617 63.158 0.00 0.00 0.00 1.82
5942 6124 3.745799 GGTTTTGGTTTTGGTTATGGGG 58.254 45.455 0.00 0.00 0.00 4.96
5945 6127 2.803386 GGCGGTTTTGGTTTTGGTTATG 59.197 45.455 0.00 0.00 0.00 1.90
5947 6129 1.829222 TGGCGGTTTTGGTTTTGGTTA 59.171 42.857 0.00 0.00 0.00 2.85
6006 6188 0.460987 GCTCCTGTTCAGTCCCATCG 60.461 60.000 0.00 0.00 0.00 3.84
6011 6193 3.149196 TGATTTTGCTCCTGTTCAGTCC 58.851 45.455 0.00 0.00 0.00 3.85
6025 6207 2.279741 TCTTCTCCGCGGATGATTTTG 58.720 47.619 31.19 15.53 0.00 2.44
6032 6214 0.108615 CACTGTTCTTCTCCGCGGAT 60.109 55.000 31.19 7.41 0.00 4.18
6053 6235 9.716507 CATTTACTTACATAAACTCCATTTCCG 57.283 33.333 0.00 0.00 0.00 4.30
6057 6239 8.466798 GCCACATTTACTTACATAAACTCCATT 58.533 33.333 0.00 0.00 0.00 3.16
6058 6240 7.201696 CGCCACATTTACTTACATAAACTCCAT 60.202 37.037 0.00 0.00 0.00 3.41
6066 6251 7.436430 TGTTTTCGCCACATTTACTTACATA 57.564 32.000 0.00 0.00 0.00 2.29
6095 6280 1.889170 CAGCAACCTTCCTCCTTTTCC 59.111 52.381 0.00 0.00 0.00 3.13
6097 6282 1.133356 AGCAGCAACCTTCCTCCTTTT 60.133 47.619 0.00 0.00 0.00 2.27
6388 6597 6.814644 TCATTTATGCTGAAATTTGCTGGAAG 59.185 34.615 0.00 0.00 0.00 3.46
6424 6634 5.863397 TCTGAACAACAGCAAAGAAAAACAG 59.137 36.000 0.00 0.00 45.38 3.16
6449 6667 9.474920 CTAAATTGTTCTGGATTTTACAGCAAA 57.525 29.630 0.00 0.00 35.94 3.68
6468 6686 8.940768 TTTCTCCCAAACAAGAAACTAAATTG 57.059 30.769 0.00 0.00 36.76 2.32
6480 6698 3.096092 ACAGCTGTTTTCTCCCAAACAA 58.904 40.909 15.25 0.00 44.21 2.83
6485 6703 0.106769 TGCACAGCTGTTTTCTCCCA 60.107 50.000 18.94 3.07 0.00 4.37
6681 6911 0.108615 CAGGAATCGGACTTCGCTGT 60.109 55.000 0.00 0.00 39.05 4.40
6727 6957 2.916052 GCACAGCACAGCACAGCAT 61.916 57.895 0.00 0.00 0.00 3.79
6736 6966 2.903350 CCAGCACAGCACAGCACA 60.903 61.111 0.00 0.00 0.00 4.57
6737 6967 2.903855 ACCAGCACAGCACAGCAC 60.904 61.111 0.00 0.00 0.00 4.40
6738 6968 2.903350 CACCAGCACAGCACAGCA 60.903 61.111 0.00 0.00 0.00 4.41
6739 6969 4.338539 GCACCAGCACAGCACAGC 62.339 66.667 0.00 0.00 41.58 4.40
6761 6991 0.467290 GTCAGAAAGCCCACCCACAA 60.467 55.000 0.00 0.00 0.00 3.33
6777 7007 0.179148 CCGTTCCGTGATCATCGTCA 60.179 55.000 0.00 0.00 0.00 4.35
6780 7010 1.200483 CTTCCGTTCCGTGATCATCG 58.800 55.000 0.00 4.68 0.00 3.84
6800 7030 4.314522 TTTCATTTCACAGGGATGGCTA 57.685 40.909 0.00 0.00 0.00 3.93
6832 7067 3.672447 TGCGTTCGAGCGTGGGTA 61.672 61.111 22.62 2.50 40.67 3.69
6858 7093 1.110518 TGAACCAAAGGGGGCGTTTC 61.111 55.000 0.00 0.00 42.91 2.78
6862 7097 1.184970 AACATGAACCAAAGGGGGCG 61.185 55.000 0.00 0.00 42.91 6.13
6863 7098 1.055849 AAACATGAACCAAAGGGGGC 58.944 50.000 0.00 0.00 42.91 5.80
6864 7099 2.038426 GGAAAACATGAACCAAAGGGGG 59.962 50.000 0.00 0.00 42.91 5.40
6878 7113 4.534500 TCCTCCATTGCTACTAGGAAAACA 59.466 41.667 0.00 0.00 33.45 2.83
6879 7114 5.099042 TCCTCCATTGCTACTAGGAAAAC 57.901 43.478 0.00 0.00 33.45 2.43
6880 7115 5.428457 TGATCCTCCATTGCTACTAGGAAAA 59.572 40.000 0.00 0.00 39.68 2.29
6881 7116 4.968719 TGATCCTCCATTGCTACTAGGAAA 59.031 41.667 0.00 0.00 39.68 3.13
6882 7117 4.556697 TGATCCTCCATTGCTACTAGGAA 58.443 43.478 0.00 0.00 39.68 3.36
6883 7118 4.199002 TGATCCTCCATTGCTACTAGGA 57.801 45.455 0.00 0.00 40.50 2.94
6884 7119 4.963318 TTGATCCTCCATTGCTACTAGG 57.037 45.455 0.00 0.00 0.00 3.02
6885 7120 6.429385 GGATTTTGATCCTCCATTGCTACTAG 59.571 42.308 0.00 0.00 37.73 2.57
6886 7121 6.299141 GGATTTTGATCCTCCATTGCTACTA 58.701 40.000 0.00 0.00 37.73 1.82
6887 7122 5.136105 GGATTTTGATCCTCCATTGCTACT 58.864 41.667 0.00 0.00 37.73 2.57
6888 7123 5.444663 GGATTTTGATCCTCCATTGCTAC 57.555 43.478 0.00 0.00 37.73 3.58
6906 7141 9.479549 ACCAACATGTGATATTTTCTAAGGATT 57.520 29.630 0.00 0.00 0.00 3.01
6908 7143 9.967451 TTACCAACATGTGATATTTTCTAAGGA 57.033 29.630 0.00 0.00 0.00 3.36
6945 7180 9.991388 GTCTGTGTGTTTACTGTGTTTAAAATA 57.009 29.630 0.00 0.00 0.00 1.40
6946 7181 7.694784 CGTCTGTGTGTTTACTGTGTTTAAAAT 59.305 33.333 0.00 0.00 0.00 1.82
6947 7182 7.016466 CGTCTGTGTGTTTACTGTGTTTAAAA 58.984 34.615 0.00 0.00 0.00 1.52
6948 7183 6.535811 CGTCTGTGTGTTTACTGTGTTTAAA 58.464 36.000 0.00 0.00 0.00 1.52
6949 7184 5.446206 GCGTCTGTGTGTTTACTGTGTTTAA 60.446 40.000 0.00 0.00 0.00 1.52
6950 7185 4.033129 GCGTCTGTGTGTTTACTGTGTTTA 59.967 41.667 0.00 0.00 0.00 2.01
6951 7186 3.181514 GCGTCTGTGTGTTTACTGTGTTT 60.182 43.478 0.00 0.00 0.00 2.83
6952 7187 2.350498 GCGTCTGTGTGTTTACTGTGTT 59.650 45.455 0.00 0.00 0.00 3.32
6953 7188 1.931172 GCGTCTGTGTGTTTACTGTGT 59.069 47.619 0.00 0.00 0.00 3.72
6954 7189 2.201732 AGCGTCTGTGTGTTTACTGTG 58.798 47.619 0.00 0.00 0.00 3.66
6955 7190 2.159156 TGAGCGTCTGTGTGTTTACTGT 60.159 45.455 0.00 0.00 0.00 3.55
6956 7191 2.469826 TGAGCGTCTGTGTGTTTACTG 58.530 47.619 0.00 0.00 0.00 2.74
6957 7192 2.882927 TGAGCGTCTGTGTGTTTACT 57.117 45.000 0.00 0.00 0.00 2.24
6958 7193 3.985279 TGTATGAGCGTCTGTGTGTTTAC 59.015 43.478 0.00 0.00 0.00 2.01
6959 7194 4.245845 TGTATGAGCGTCTGTGTGTTTA 57.754 40.909 0.00 0.00 0.00 2.01
6960 7195 3.106242 TGTATGAGCGTCTGTGTGTTT 57.894 42.857 0.00 0.00 0.00 2.83
6961 7196 2.812358 TGTATGAGCGTCTGTGTGTT 57.188 45.000 0.00 0.00 0.00 3.32
6962 7197 3.730963 CGTATGTATGAGCGTCTGTGTGT 60.731 47.826 0.00 0.00 0.00 3.72
6963 7198 2.783832 CGTATGTATGAGCGTCTGTGTG 59.216 50.000 0.00 0.00 0.00 3.82
6964 7199 2.794981 GCGTATGTATGAGCGTCTGTGT 60.795 50.000 0.00 0.00 0.00 3.72
6965 7200 1.781429 GCGTATGTATGAGCGTCTGTG 59.219 52.381 0.00 0.00 0.00 3.66
6966 7201 1.404035 TGCGTATGTATGAGCGTCTGT 59.596 47.619 0.00 0.00 0.00 3.41
6967 7202 1.781429 GTGCGTATGTATGAGCGTCTG 59.219 52.381 0.00 0.00 0.00 3.51
6968 7203 1.404035 TGTGCGTATGTATGAGCGTCT 59.596 47.619 0.00 0.00 0.00 4.18
6969 7204 1.835121 TGTGCGTATGTATGAGCGTC 58.165 50.000 0.00 0.00 0.00 5.19
6970 7205 2.509052 ATGTGCGTATGTATGAGCGT 57.491 45.000 0.00 0.00 0.00 5.07
6971 7206 3.119628 GTGTATGTGCGTATGTATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
6972 7207 4.299155 AGTGTATGTGCGTATGTATGAGC 58.701 43.478 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.