Multiple sequence alignment - TraesCS1A01G063600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G063600 | chr1A | 100.000 | 5471 | 0 | 0 | 483 | 5953 | 44407600 | 44413070 | 0.000000e+00 | 10104.0 |
1 | TraesCS1A01G063600 | chr1A | 100.000 | 292 | 0 | 0 | 1 | 292 | 44407118 | 44407409 | 1.890000e-149 | 540.0 |
2 | TraesCS1A01G063600 | chr1A | 87.006 | 354 | 32 | 9 | 4906 | 5256 | 45296487 | 45296829 | 2.600000e-103 | 387.0 |
3 | TraesCS1A01G063600 | chr1B | 92.672 | 4626 | 220 | 51 | 483 | 5063 | 63960221 | 63964772 | 0.000000e+00 | 6554.0 |
4 | TraesCS1A01G063600 | chr1B | 90.326 | 920 | 63 | 9 | 4027 | 4924 | 63964868 | 63965783 | 0.000000e+00 | 1182.0 |
5 | TraesCS1A01G063600 | chr1B | 86.889 | 389 | 39 | 10 | 4905 | 5286 | 65274244 | 65274627 | 5.510000e-115 | 425.0 |
6 | TraesCS1A01G063600 | chr1B | 86.923 | 390 | 38 | 11 | 4905 | 5287 | 65279086 | 65279469 | 5.510000e-115 | 425.0 |
7 | TraesCS1A01G063600 | chr1B | 86.118 | 389 | 42 | 8 | 4905 | 5286 | 65277266 | 65277649 | 5.550000e-110 | 409.0 |
8 | TraesCS1A01G063600 | chr1B | 92.910 | 268 | 15 | 2 | 1 | 265 | 63959522 | 63959788 | 2.600000e-103 | 387.0 |
9 | TraesCS1A01G063600 | chr1B | 82.000 | 150 | 15 | 3 | 98 | 235 | 22738441 | 22738292 | 3.770000e-22 | 117.0 |
10 | TraesCS1A01G063600 | chr1B | 94.118 | 68 | 4 | 0 | 5048 | 5115 | 63964790 | 63964857 | 2.930000e-18 | 104.0 |
11 | TraesCS1A01G063600 | chr1D | 93.636 | 2027 | 110 | 7 | 3053 | 5063 | 44645362 | 44647385 | 0.000000e+00 | 3011.0 |
12 | TraesCS1A01G063600 | chr1D | 87.653 | 899 | 68 | 22 | 484 | 1371 | 44642559 | 44643425 | 0.000000e+00 | 1005.0 |
13 | TraesCS1A01G063600 | chr1D | 95.547 | 539 | 21 | 2 | 2520 | 3055 | 44644701 | 44645239 | 0.000000e+00 | 859.0 |
14 | TraesCS1A01G063600 | chr1D | 92.293 | 519 | 32 | 7 | 1952 | 2469 | 44643929 | 44644440 | 0.000000e+00 | 730.0 |
15 | TraesCS1A01G063600 | chr1D | 87.661 | 389 | 39 | 7 | 4905 | 5287 | 45276657 | 45277042 | 1.520000e-120 | 444.0 |
16 | TraesCS1A01G063600 | chr1D | 85.412 | 425 | 29 | 15 | 5549 | 5945 | 44647662 | 44648081 | 1.540000e-110 | 411.0 |
17 | TraesCS1A01G063600 | chr1D | 91.450 | 269 | 16 | 3 | 1 | 265 | 44641996 | 44642261 | 4.390000e-96 | 363.0 |
18 | TraesCS1A01G063600 | chr1D | 82.391 | 460 | 35 | 24 | 1409 | 1847 | 44643426 | 44643860 | 5.670000e-95 | 359.0 |
19 | TraesCS1A01G063600 | chr1D | 85.892 | 241 | 29 | 4 | 5048 | 5287 | 44647403 | 44647639 | 9.900000e-63 | 252.0 |
20 | TraesCS1A01G063600 | chr1D | 100.000 | 39 | 0 | 0 | 1854 | 1892 | 44643886 | 44643924 | 8.280000e-09 | 73.1 |
21 | TraesCS1A01G063600 | chr3A | 98.773 | 163 | 2 | 0 | 5303 | 5465 | 127271507 | 127271345 | 2.100000e-74 | 291.0 |
22 | TraesCS1A01G063600 | chr3A | 96.078 | 51 | 2 | 0 | 580 | 630 | 108218435 | 108218485 | 3.820000e-12 | 84.2 |
23 | TraesCS1A01G063600 | chr4A | 96.970 | 165 | 5 | 0 | 5303 | 5467 | 667379647 | 667379811 | 1.630000e-70 | 278.0 |
24 | TraesCS1A01G063600 | chr2B | 96.933 | 163 | 5 | 0 | 5303 | 5465 | 560443246 | 560443408 | 2.110000e-69 | 274.0 |
25 | TraesCS1A01G063600 | chr2B | 94.545 | 165 | 9 | 0 | 5303 | 5467 | 80195933 | 80195769 | 7.660000e-64 | 255.0 |
26 | TraesCS1A01G063600 | chr6B | 94.578 | 166 | 9 | 0 | 5301 | 5466 | 233173332 | 233173497 | 2.130000e-64 | 257.0 |
27 | TraesCS1A01G063600 | chr6B | 81.333 | 150 | 16 | 3 | 98 | 235 | 151488414 | 151488265 | 1.750000e-20 | 111.0 |
28 | TraesCS1A01G063600 | chr4B | 95.092 | 163 | 8 | 0 | 5303 | 5465 | 461850250 | 461850088 | 2.130000e-64 | 257.0 |
29 | TraesCS1A01G063600 | chr2A | 94.083 | 169 | 9 | 1 | 5299 | 5467 | 753421731 | 753421564 | 7.660000e-64 | 255.0 |
30 | TraesCS1A01G063600 | chr2A | 86.486 | 148 | 17 | 2 | 483 | 630 | 728718572 | 728718428 | 6.180000e-35 | 159.0 |
31 | TraesCS1A01G063600 | chr2D | 93.064 | 173 | 10 | 2 | 5303 | 5474 | 240791023 | 240791194 | 9.900000e-63 | 252.0 |
32 | TraesCS1A01G063600 | chr2D | 95.833 | 48 | 2 | 0 | 580 | 627 | 532378427 | 532378474 | 1.780000e-10 | 78.7 |
33 | TraesCS1A01G063600 | chr2D | 94.118 | 51 | 3 | 0 | 580 | 630 | 592919693 | 592919643 | 1.780000e-10 | 78.7 |
34 | TraesCS1A01G063600 | chr7A | 92.045 | 176 | 14 | 0 | 5303 | 5478 | 699482888 | 699482713 | 1.280000e-61 | 248.0 |
35 | TraesCS1A01G063600 | chr7B | 82.667 | 150 | 14 | 3 | 98 | 235 | 594730511 | 594730362 | 8.100000e-24 | 122.0 |
36 | TraesCS1A01G063600 | chr6A | 79.781 | 183 | 19 | 6 | 98 | 263 | 65262683 | 65262502 | 3.770000e-22 | 117.0 |
37 | TraesCS1A01G063600 | chr7D | 95.833 | 48 | 2 | 0 | 580 | 627 | 485653067 | 485653114 | 1.780000e-10 | 78.7 |
38 | TraesCS1A01G063600 | chr5D | 94.118 | 51 | 3 | 0 | 580 | 630 | 545794097 | 545794047 | 1.780000e-10 | 78.7 |
39 | TraesCS1A01G063600 | chr3D | 94.118 | 51 | 3 | 0 | 580 | 630 | 493419597 | 493419547 | 1.780000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G063600 | chr1A | 44407118 | 44413070 | 5952 | False | 5322.000000 | 10104 | 100.000000 | 1 | 5953 | 2 | chr1A.!!$F2 | 5952 |
1 | TraesCS1A01G063600 | chr1B | 63959522 | 63965783 | 6261 | False | 2056.750000 | 6554 | 92.506500 | 1 | 5115 | 4 | chr1B.!!$F1 | 5114 |
2 | TraesCS1A01G063600 | chr1B | 65274244 | 65279469 | 5225 | False | 419.666667 | 425 | 86.643333 | 4905 | 5287 | 3 | chr1B.!!$F2 | 382 |
3 | TraesCS1A01G063600 | chr1D | 44641996 | 44648081 | 6085 | False | 784.788889 | 3011 | 90.474889 | 1 | 5945 | 9 | chr1D.!!$F2 | 5944 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
288 | 680 | 0.107897 | ACACGCAGACAACCAGTTCA | 60.108 | 50.0 | 0.00 | 0.0 | 0.00 | 3.18 | F |
555 | 947 | 0.321564 | GGAGCAGGCACACACATACA | 60.322 | 55.0 | 0.00 | 0.0 | 0.00 | 2.29 | F |
841 | 1236 | 0.462047 | CGGTGGCTACTGGATTGGAC | 60.462 | 60.0 | 0.05 | 0.0 | 0.00 | 4.02 | F |
1023 | 1420 | 0.540365 | AAGCCACAATCACCCACCAG | 60.540 | 55.0 | 0.00 | 0.0 | 0.00 | 4.00 | F |
1816 | 2257 | 0.598065 | GCAAAATGTGGCTTCTCGGT | 59.402 | 50.0 | 0.00 | 0.0 | 0.00 | 4.69 | F |
2818 | 3503 | 0.169009 | GAGGACGCATTTGCCTTGAC | 59.831 | 55.0 | 0.00 | 0.0 | 37.91 | 3.18 | F |
4314 | 5124 | 0.250858 | TGTCAGGTCCAGTTGCCATG | 60.251 | 55.0 | 0.00 | 0.0 | 0.00 | 3.66 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1156 | 1553 | 0.107897 | TTCCCGTTCGATGATGTGGG | 60.108 | 55.000 | 0.00 | 0.0 | 38.02 | 4.61 | R |
1728 | 2169 | 0.397564 | AACCGACAATACAACCGGGT | 59.602 | 50.000 | 6.32 | 0.0 | 45.63 | 5.28 | R |
1831 | 2272 | 1.701704 | AACGAGTAAACCGGCGTTAG | 58.298 | 50.000 | 12.62 | 0.0 | 44.07 | 2.34 | R |
2283 | 2753 | 2.298163 | AGCCTGCACAAAAGGAAGATTG | 59.702 | 45.455 | 0.00 | 0.0 | 36.91 | 2.67 | R |
3743 | 4553 | 0.469917 | ACCTTCCACACTGTCACTGG | 59.530 | 55.000 | 0.00 | 0.0 | 0.00 | 4.00 | R |
4357 | 5167 | 1.019278 | GGACGATCGCTTTGGCTGAA | 61.019 | 55.000 | 16.60 | 0.0 | 36.09 | 3.02 | R |
5535 | 6399 | 0.179040 | ACCATAATTGCCCGTACCCG | 60.179 | 55.000 | 0.00 | 0.0 | 0.00 | 5.28 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
89 | 94 | 3.259374 | TGGTTTGTGCCAAGTTTTGAAGA | 59.741 | 39.130 | 0.00 | 0.00 | 35.25 | 2.87 |
91 | 96 | 4.494484 | GTTTGTGCCAAGTTTTGAAGAGT | 58.506 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
161 | 166 | 7.520131 | GCCTAAAAGTACAAGACTGAAAGAACC | 60.520 | 40.741 | 0.00 | 0.00 | 38.87 | 3.62 |
175 | 180 | 7.681862 | ACTGAAAGAACCCAAAAGGTACATCG | 61.682 | 42.308 | 0.00 | 0.00 | 44.08 | 3.84 |
185 | 190 | 6.645415 | CCCAAAAGGTACATCGTCTATGATAC | 59.355 | 42.308 | 0.00 | 0.00 | 39.07 | 2.24 |
211 | 216 | 7.593273 | CGTTTAGCATTTGTATTTGAACTGGAA | 59.407 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
222 | 227 | 7.560991 | TGTATTTGAACTGGAATAGGATTGCAT | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
276 | 668 | 2.354074 | AAAAGGCAGGCAACACGCAG | 62.354 | 55.000 | 0.00 | 0.00 | 45.17 | 5.18 |
281 | 673 | 1.009675 | CAGGCAACACGCAGACAAC | 60.010 | 57.895 | 0.00 | 0.00 | 45.17 | 3.32 |
282 | 674 | 2.186826 | AGGCAACACGCAGACAACC | 61.187 | 57.895 | 0.00 | 0.00 | 45.17 | 3.77 |
283 | 675 | 2.477176 | GGCAACACGCAGACAACCA | 61.477 | 57.895 | 0.00 | 0.00 | 45.17 | 3.67 |
284 | 676 | 1.009675 | GCAACACGCAGACAACCAG | 60.010 | 57.895 | 0.00 | 0.00 | 41.79 | 4.00 |
286 | 678 | 0.732571 | CAACACGCAGACAACCAGTT | 59.267 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
287 | 679 | 1.014352 | AACACGCAGACAACCAGTTC | 58.986 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
288 | 680 | 0.107897 | ACACGCAGACAACCAGTTCA | 60.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
289 | 681 | 1.229428 | CACGCAGACAACCAGTTCAT | 58.771 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
290 | 682 | 1.195448 | CACGCAGACAACCAGTTCATC | 59.805 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
291 | 683 | 0.798776 | CGCAGACAACCAGTTCATCC | 59.201 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
555 | 947 | 0.321564 | GGAGCAGGCACACACATACA | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
576 | 968 | 0.522626 | TCGCCTACGACGACATGAAA | 59.477 | 50.000 | 0.00 | 0.00 | 45.12 | 2.69 |
587 | 979 | 1.743996 | GACATGAAACCCTCAGGCTC | 58.256 | 55.000 | 0.00 | 0.00 | 39.53 | 4.70 |
631 | 1023 | 1.067212 | CCTTATTAGCTCAGGCGTCGT | 59.933 | 52.381 | 0.00 | 0.00 | 44.37 | 4.34 |
652 | 1044 | 1.602237 | GGGGAGCTGAATCCGACAA | 59.398 | 57.895 | 0.00 | 0.00 | 40.56 | 3.18 |
663 | 1055 | 0.678048 | ATCCGACAAGGGCAAGAAGC | 60.678 | 55.000 | 0.00 | 0.00 | 41.52 | 3.86 |
680 | 1072 | 1.490574 | AGCAAGCTAGTACCTGGGAG | 58.509 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
714 | 1106 | 1.700042 | ATGGGATTGGAGGAGGCGAC | 61.700 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
721 | 1113 | 2.637383 | GGAGGAGGCGACGTGAACT | 61.637 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
724 | 1116 | 2.254651 | GAGGCGACGTGAACTCGT | 59.745 | 61.111 | 0.00 | 1.71 | 46.88 | 4.18 |
733 | 1125 | 2.522436 | TGAACTCGTGACGGGGGT | 60.522 | 61.111 | 10.58 | 0.00 | 0.00 | 4.95 |
738 | 1130 | 4.988716 | TCGTGACGGGGGTGAGCT | 62.989 | 66.667 | 4.70 | 0.00 | 0.00 | 4.09 |
841 | 1236 | 0.462047 | CGGTGGCTACTGGATTGGAC | 60.462 | 60.000 | 0.05 | 0.00 | 0.00 | 4.02 |
845 | 1240 | 2.027192 | GTGGCTACTGGATTGGACTGAA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
848 | 1243 | 3.135530 | GGCTACTGGATTGGACTGAAGAT | 59.864 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
850 | 1245 | 3.641434 | ACTGGATTGGACTGAAGATGG | 57.359 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
861 | 1256 | 7.257790 | TGGACTGAAGATGGAGAAATAGAAA | 57.742 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
863 | 1258 | 7.607991 | TGGACTGAAGATGGAGAAATAGAAAAC | 59.392 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
870 | 1265 | 4.312443 | TGGAGAAATAGAAAACGCGAAGT | 58.688 | 39.130 | 15.93 | 0.00 | 0.00 | 3.01 |
887 | 1282 | 2.879103 | AGTTGGACCGTTGGATTGAT | 57.121 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
924 | 1319 | 1.961180 | GCAGTGCTGGGATCCGTAGT | 61.961 | 60.000 | 8.18 | 0.00 | 0.00 | 2.73 |
942 | 1339 | 1.349688 | AGTACACGCAAATGAGGGGAA | 59.650 | 47.619 | 0.00 | 0.00 | 0.00 | 3.97 |
948 | 1345 | 1.470285 | CGCAAATGAGGGGAATGCTTG | 60.470 | 52.381 | 0.00 | 0.00 | 34.93 | 4.01 |
991 | 1388 | 0.825425 | TGGTGAATTTGCTTCCGCCA | 60.825 | 50.000 | 0.00 | 0.00 | 36.30 | 5.69 |
1022 | 1419 | 0.827089 | CAAGCCACAATCACCCACCA | 60.827 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1023 | 1420 | 0.540365 | AAGCCACAATCACCCACCAG | 60.540 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1024 | 1421 | 1.978617 | GCCACAATCACCCACCAGG | 60.979 | 63.158 | 0.00 | 0.00 | 43.78 | 4.45 |
1086 | 1483 | 1.659954 | GCGCTGCTCCAGATCTACG | 60.660 | 63.158 | 0.00 | 0.00 | 32.44 | 3.51 |
1096 | 1493 | 2.202878 | GATCTACGGCCAAGCGCA | 60.203 | 61.111 | 11.47 | 0.00 | 40.31 | 6.09 |
1111 | 1508 | 2.941583 | GCACCCCTTCCCTTCCCT | 60.942 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
1112 | 1509 | 2.548547 | GCACCCCTTCCCTTCCCTT | 61.549 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
1113 | 1510 | 1.691823 | CACCCCTTCCCTTCCCTTC | 59.308 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
1114 | 1511 | 1.544151 | ACCCCTTCCCTTCCCTTCC | 60.544 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
1115 | 1512 | 2.317378 | CCCCTTCCCTTCCCTTCCC | 61.317 | 68.421 | 0.00 | 0.00 | 0.00 | 3.97 |
1118 | 1515 | 1.146544 | CCTTCCCTTCCCTTCCCCAA | 61.147 | 60.000 | 0.00 | 0.00 | 0.00 | 4.12 |
1169 | 1566 | 2.189257 | CGGCCCCACATCATCGAA | 59.811 | 61.111 | 0.00 | 0.00 | 0.00 | 3.71 |
1241 | 1638 | 2.767445 | CGACACATCTACGGCGGGA | 61.767 | 63.158 | 13.24 | 9.73 | 0.00 | 5.14 |
1242 | 1639 | 1.065928 | GACACATCTACGGCGGGAG | 59.934 | 63.158 | 13.24 | 8.43 | 0.00 | 4.30 |
1244 | 1641 | 2.125326 | CACATCTACGGCGGGAGGA | 61.125 | 63.158 | 19.60 | 9.20 | 0.00 | 3.71 |
1245 | 1642 | 1.828660 | ACATCTACGGCGGGAGGAG | 60.829 | 63.158 | 19.60 | 11.20 | 0.00 | 3.69 |
1246 | 1643 | 2.913060 | ATCTACGGCGGGAGGAGC | 60.913 | 66.667 | 13.24 | 0.00 | 0.00 | 4.70 |
1247 | 1644 | 3.438615 | ATCTACGGCGGGAGGAGCT | 62.439 | 63.158 | 13.24 | 0.00 | 34.52 | 4.09 |
1249 | 1646 | 4.124943 | TACGGCGGGAGGAGCTCT | 62.125 | 66.667 | 14.64 | 0.00 | 34.52 | 4.09 |
1261 | 1660 | 4.737476 | AGCTCTCCCTGCCCTGCT | 62.737 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
1376 | 1791 | 8.866970 | TGTTAATACATGACCATGATGCATAT | 57.133 | 30.769 | 16.07 | 1.54 | 41.20 | 1.78 |
1392 | 1807 | 7.819644 | TGATGCATATAATCATGTAACAAGCC | 58.180 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
1399 | 1814 | 5.435686 | AATCATGTAACAAGCCTCCTGTA | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
1407 | 1828 | 2.370189 | ACAAGCCTCCTGTATATCTGGC | 59.630 | 50.000 | 0.00 | 0.00 | 40.54 | 4.85 |
1484 | 1908 | 9.744468 | GATAATGATATTGTTTAACACCCAACC | 57.256 | 33.333 | 0.00 | 0.00 | 0.00 | 3.77 |
1485 | 1909 | 7.790782 | AATGATATTGTTTAACACCCAACCT | 57.209 | 32.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1486 | 1910 | 8.887264 | AATGATATTGTTTAACACCCAACCTA | 57.113 | 30.769 | 0.00 | 0.00 | 0.00 | 3.08 |
1487 | 1911 | 9.487442 | AATGATATTGTTTAACACCCAACCTAT | 57.513 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1488 | 1912 | 8.887264 | TGATATTGTTTAACACCCAACCTATT | 57.113 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
1489 | 1913 | 9.315363 | TGATATTGTTTAACACCCAACCTATTT | 57.685 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1513 | 1937 | 6.849085 | ATTTAGTGTTGTATCCATGGCAAA | 57.151 | 33.333 | 6.96 | 0.00 | 0.00 | 3.68 |
1545 | 1974 | 4.253685 | TGAAACAGCCTGTTACATAGCTC | 58.746 | 43.478 | 11.10 | 3.45 | 40.14 | 4.09 |
1583 | 2012 | 5.192327 | ACATAGCTGCTTATTTTGCATCC | 57.808 | 39.130 | 7.79 | 0.00 | 39.86 | 3.51 |
1593 | 2022 | 6.127925 | TGCTTATTTTGCATCCAACTCACTAG | 60.128 | 38.462 | 0.00 | 0.00 | 35.31 | 2.57 |
1604 | 2033 | 6.328641 | TCCAACTCACTAGTCTTACTGAAC | 57.671 | 41.667 | 0.00 | 0.00 | 33.75 | 3.18 |
1627 | 2056 | 4.055360 | TCGAGATTTGAAGAAAACGAGCA | 58.945 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
1632 | 2061 | 6.606768 | AGATTTGAAGAAAACGAGCATTCTC | 58.393 | 36.000 | 0.00 | 0.00 | 34.90 | 2.87 |
1643 | 2072 | 2.677902 | CGAGCATTCTCCAGTAGCCAAA | 60.678 | 50.000 | 0.00 | 0.00 | 35.94 | 3.28 |
1644 | 2073 | 3.549794 | GAGCATTCTCCAGTAGCCAAAT | 58.450 | 45.455 | 0.00 | 0.00 | 33.19 | 2.32 |
1645 | 2074 | 3.950395 | GAGCATTCTCCAGTAGCCAAATT | 59.050 | 43.478 | 0.00 | 0.00 | 33.19 | 1.82 |
1652 | 2081 | 8.571336 | CATTCTCCAGTAGCCAAATTATTAAGG | 58.429 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
1761 | 2202 | 3.070748 | TGTCGGTTGATGGTTGTATGTG | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
1766 | 2207 | 3.572255 | GGTTGATGGTTGTATGTGTTGGT | 59.428 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
1816 | 2257 | 0.598065 | GCAAAATGTGGCTTCTCGGT | 59.402 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1896 | 2358 | 3.002102 | GTTATAACGCCCGGTTGAAGAA | 58.998 | 45.455 | 0.00 | 0.00 | 39.75 | 2.52 |
1941 | 2403 | 2.807247 | ACCTTGGACTGGTGTTTGC | 58.193 | 52.632 | 0.00 | 0.00 | 36.30 | 3.68 |
2154 | 2624 | 5.278512 | GCTAACCTGGTTCTCTTGGAAAAAG | 60.279 | 44.000 | 16.75 | 4.34 | 35.51 | 2.27 |
2161 | 2631 | 4.021981 | GGTTCTCTTGGAAAAAGGGACATG | 60.022 | 45.833 | 0.00 | 0.00 | 35.51 | 3.21 |
2169 | 2639 | 4.523943 | TGGAAAAAGGGACATGTGAGATTG | 59.476 | 41.667 | 1.15 | 0.00 | 0.00 | 2.67 |
2283 | 2753 | 8.796475 | TCCAAAGATATGCTGATATTTAAAGGC | 58.204 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
2349 | 2821 | 1.924320 | GCTCAAGCTGCAAGGCTGAG | 61.924 | 60.000 | 16.23 | 16.23 | 42.24 | 3.35 |
2386 | 2858 | 6.371271 | AGAAAGAGATTAAACTTCTGCTCAGC | 59.629 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
2499 | 2971 | 1.872952 | CACCCATACACACACACACAG | 59.127 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
2516 | 2988 | 0.883833 | CAGTCATCCCAAACAGTGCC | 59.116 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2727 | 3412 | 0.179086 | TGACAGTCACGCTTGCTGAA | 60.179 | 50.000 | 17.20 | 6.30 | 33.55 | 3.02 |
2818 | 3503 | 0.169009 | GAGGACGCATTTGCCTTGAC | 59.831 | 55.000 | 0.00 | 0.00 | 37.91 | 3.18 |
3221 | 4031 | 9.199982 | CAAGTTTTTGACATAAATGCTCAATCT | 57.800 | 29.630 | 8.03 | 6.02 | 36.36 | 2.40 |
3228 | 4038 | 6.317140 | TGACATAAATGCTCAATCTTGGACTC | 59.683 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
3379 | 4189 | 2.470990 | ACTGATAGGCACAGACCATGA | 58.529 | 47.619 | 11.91 | 0.00 | 38.55 | 3.07 |
3437 | 4247 | 5.534654 | TGGAAGTTCCTAACAAAGATTGTGG | 59.465 | 40.000 | 22.41 | 0.00 | 39.79 | 4.17 |
3530 | 4340 | 2.355513 | CCAGCACTCTTAAGCAGGATGT | 60.356 | 50.000 | 0.00 | 0.00 | 39.51 | 3.06 |
3743 | 4553 | 1.202940 | AGAGGCTCCAAACCAAAGGAC | 60.203 | 52.381 | 11.71 | 0.00 | 0.00 | 3.85 |
3749 | 4559 | 1.566703 | TCCAAACCAAAGGACCAGTGA | 59.433 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3766 | 4576 | 3.039011 | AGTGACAGTGTGGAAGGTAAGT | 58.961 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
4006 | 4816 | 7.925622 | TGAATATATGGCTCCAGATCATCTTT | 58.074 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
4012 | 4822 | 3.876320 | GGCTCCAGATCATCTTTCTTCAC | 59.124 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
4015 | 4825 | 4.511527 | TCCAGATCATCTTTCTTCACTGC | 58.488 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
4040 | 4850 | 7.602265 | GCCAGGTTTTAATAATCTGCAGAAAAA | 59.398 | 33.333 | 22.50 | 18.44 | 0.00 | 1.94 |
4095 | 4905 | 2.771089 | TGTGCTGATCTGGTTCAAGAC | 58.229 | 47.619 | 1.46 | 0.00 | 0.00 | 3.01 |
4107 | 4917 | 7.009179 | TCTGGTTCAAGACAATTCTCATACT | 57.991 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
4120 | 4930 | 7.826252 | ACAATTCTCATACTGAGCATGTACTTT | 59.174 | 33.333 | 0.00 | 0.00 | 43.95 | 2.66 |
4252 | 5062 | 5.103940 | ACAAGTGACAAGGGATATAAGCCAT | 60.104 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4314 | 5124 | 0.250858 | TGTCAGGTCCAGTTGCCATG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
4357 | 5167 | 5.812127 | GGCTTTGTTGATTCACAGAAAAGTT | 59.188 | 36.000 | 0.00 | 0.00 | 36.26 | 2.66 |
4369 | 5179 | 2.791004 | CAGAAAAGTTTCAGCCAAAGCG | 59.209 | 45.455 | 6.56 | 0.00 | 39.61 | 4.68 |
4608 | 5418 | 5.419542 | TCAAGGTTATCGTTGATGAAGAGG | 58.580 | 41.667 | 5.10 | 0.00 | 41.48 | 3.69 |
4610 | 5420 | 3.197766 | AGGTTATCGTTGATGAAGAGGCA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
4666 | 5489 | 4.143115 | CGAAAACGTTGCTGTCATGTAGAT | 60.143 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
4744 | 5567 | 5.511377 | CGCACGTTTTGATGTTTATATTGCT | 59.489 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4962 | 5789 | 5.934043 | ACAATTTGGAAAAAGGATAGCTTGC | 59.066 | 36.000 | 0.00 | 0.00 | 0.00 | 4.01 |
4966 | 5793 | 5.835113 | TGGAAAAAGGATAGCTTGCATAC | 57.165 | 39.130 | 0.00 | 0.00 | 0.00 | 2.39 |
4985 | 5812 | 7.873739 | GCATACTTGCTTGTTCAGTAAAATT | 57.126 | 32.000 | 0.00 | 0.00 | 45.77 | 1.82 |
4991 | 5818 | 9.683069 | ACTTGCTTGTTCAGTAAAATTGATAAG | 57.317 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
5035 | 5862 | 6.997222 | GCATTCTTGCCATCTAATTTTTCAC | 58.003 | 36.000 | 0.00 | 0.00 | 43.38 | 3.18 |
5036 | 5863 | 6.591062 | GCATTCTTGCCATCTAATTTTTCACA | 59.409 | 34.615 | 0.00 | 0.00 | 43.38 | 3.58 |
5038 | 5865 | 8.814235 | CATTCTTGCCATCTAATTTTTCACATC | 58.186 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
5040 | 5867 | 8.806429 | TCTTGCCATCTAATTTTTCACATCTA | 57.194 | 30.769 | 0.00 | 0.00 | 0.00 | 1.98 |
5126 | 5983 | 0.988832 | TGTTCCCTCGTAAGCCCATT | 59.011 | 50.000 | 0.00 | 0.00 | 37.18 | 3.16 |
5132 | 5989 | 4.457466 | TCCCTCGTAAGCCCATTTATTTC | 58.543 | 43.478 | 0.00 | 0.00 | 37.18 | 2.17 |
5133 | 5990 | 3.568430 | CCCTCGTAAGCCCATTTATTTCC | 59.432 | 47.826 | 0.00 | 0.00 | 37.18 | 3.13 |
5136 | 5993 | 4.204012 | TCGTAAGCCCATTTATTTCCTGG | 58.796 | 43.478 | 0.00 | 0.00 | 37.18 | 4.45 |
5137 | 5994 | 3.243401 | CGTAAGCCCATTTATTTCCTGGC | 60.243 | 47.826 | 0.00 | 0.00 | 39.17 | 4.85 |
5141 | 5998 | 2.742856 | GCCCATTTATTTCCTGGCAAGC | 60.743 | 50.000 | 0.00 | 0.00 | 38.73 | 4.01 |
5172 | 6032 | 9.086336 | CATTCTGTATTTGTTTCAGTTGTTTGT | 57.914 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
5228 | 6092 | 6.915300 | TGACAATTTTGTACTGATTGTTTCCG | 59.085 | 34.615 | 17.14 | 0.00 | 42.31 | 4.30 |
5234 | 6098 | 8.934507 | TTTTGTACTGATTGTTTCCGAAAATT | 57.065 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
5243 | 6107 | 5.759506 | TGTTTCCGAAAATTACAAGCTGA | 57.240 | 34.783 | 0.00 | 0.00 | 0.00 | 4.26 |
5263 | 6127 | 5.562890 | GCTGAAAGGTCGCAAAATTTAGTCT | 60.563 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5272 | 6136 | 5.815740 | TCGCAAAATTTAGTCTCTATGGGAC | 59.184 | 40.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5276 | 6140 | 6.540438 | AAATTTAGTCTCTATGGGACGTCA | 57.460 | 37.500 | 18.91 | 0.00 | 38.58 | 4.35 |
5282 | 6146 | 8.563123 | TTAGTCTCTATGGGACGTCATATAAG | 57.437 | 38.462 | 18.91 | 13.29 | 38.58 | 1.73 |
5287 | 6151 | 7.554476 | TCTCTATGGGACGTCATATAAGATGAG | 59.446 | 40.741 | 18.91 | 15.22 | 0.00 | 2.90 |
5288 | 6152 | 5.667539 | ATGGGACGTCATATAAGATGAGG | 57.332 | 43.478 | 18.91 | 5.42 | 39.16 | 3.86 |
5289 | 6153 | 3.258372 | TGGGACGTCATATAAGATGAGGC | 59.742 | 47.826 | 18.91 | 0.00 | 37.41 | 4.70 |
5291 | 6155 | 2.917971 | GACGTCATATAAGATGAGGCGC | 59.082 | 50.000 | 11.55 | 0.00 | 37.41 | 6.53 |
5292 | 6156 | 2.263077 | CGTCATATAAGATGAGGCGCC | 58.737 | 52.381 | 21.89 | 21.89 | 0.00 | 6.53 |
5293 | 6157 | 2.622436 | GTCATATAAGATGAGGCGCCC | 58.378 | 52.381 | 26.15 | 15.80 | 0.00 | 6.13 |
5296 | 6160 | 0.976641 | TATAAGATGAGGCGCCCCTG | 59.023 | 55.000 | 26.15 | 0.00 | 43.12 | 4.45 |
5298 | 6162 | 2.889521 | TAAGATGAGGCGCCCCTGGA | 62.890 | 60.000 | 26.15 | 2.33 | 43.12 | 3.86 |
5300 | 6164 | 3.338250 | ATGAGGCGCCCCTGGAAA | 61.338 | 61.111 | 26.15 | 0.00 | 43.12 | 3.13 |
5301 | 6165 | 3.350031 | ATGAGGCGCCCCTGGAAAG | 62.350 | 63.158 | 26.15 | 0.00 | 43.12 | 2.62 |
5302 | 6166 | 4.035102 | GAGGCGCCCCTGGAAAGT | 62.035 | 66.667 | 26.15 | 0.00 | 43.12 | 2.66 |
5303 | 6167 | 2.609610 | AGGCGCCCCTGGAAAGTA | 60.610 | 61.111 | 26.15 | 0.00 | 40.94 | 2.24 |
5304 | 6168 | 2.437895 | GGCGCCCCTGGAAAGTAC | 60.438 | 66.667 | 18.11 | 0.00 | 0.00 | 2.73 |
5305 | 6169 | 2.669240 | GCGCCCCTGGAAAGTACT | 59.331 | 61.111 | 0.00 | 0.00 | 0.00 | 2.73 |
5306 | 6170 | 1.449778 | GCGCCCCTGGAAAGTACTC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 2.59 |
5307 | 6171 | 1.221021 | CGCCCCTGGAAAGTACTCC | 59.779 | 63.158 | 0.00 | 0.00 | 35.88 | 3.85 |
5308 | 6172 | 1.608154 | GCCCCTGGAAAGTACTCCC | 59.392 | 63.158 | 0.00 | 1.23 | 34.22 | 4.30 |
5310 | 6174 | 1.205055 | CCCCTGGAAAGTACTCCCTC | 58.795 | 60.000 | 13.46 | 4.06 | 34.22 | 4.30 |
5311 | 6175 | 1.205055 | CCCTGGAAAGTACTCCCTCC | 58.795 | 60.000 | 13.46 | 11.91 | 34.22 | 4.30 |
5312 | 6176 | 0.824759 | CCTGGAAAGTACTCCCTCCG | 59.175 | 60.000 | 13.46 | 8.62 | 34.22 | 4.63 |
5313 | 6177 | 1.558233 | CTGGAAAGTACTCCCTCCGT | 58.442 | 55.000 | 13.46 | 0.00 | 34.22 | 4.69 |
5314 | 6178 | 1.900486 | CTGGAAAGTACTCCCTCCGTT | 59.100 | 52.381 | 13.46 | 0.00 | 34.22 | 4.44 |
5315 | 6179 | 1.897802 | TGGAAAGTACTCCCTCCGTTC | 59.102 | 52.381 | 13.46 | 4.69 | 34.22 | 3.95 |
5316 | 6180 | 1.206610 | GGAAAGTACTCCCTCCGTTCC | 59.793 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
5317 | 6181 | 2.177734 | GAAAGTACTCCCTCCGTTCCT | 58.822 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
5318 | 6182 | 3.359950 | GAAAGTACTCCCTCCGTTCCTA | 58.640 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
5319 | 6183 | 3.463048 | AAGTACTCCCTCCGTTCCTAA | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
5320 | 6184 | 3.463048 | AGTACTCCCTCCGTTCCTAAA | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
5321 | 6185 | 3.991683 | AGTACTCCCTCCGTTCCTAAAT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
5322 | 6186 | 5.134725 | AGTACTCCCTCCGTTCCTAAATA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
5323 | 6187 | 5.713807 | AGTACTCCCTCCGTTCCTAAATAT | 58.286 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
5324 | 6188 | 6.856757 | AGTACTCCCTCCGTTCCTAAATATA | 58.143 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
5325 | 6189 | 7.300658 | AGTACTCCCTCCGTTCCTAAATATAA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
5326 | 6190 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
5327 | 6191 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5328 | 6192 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
5329 | 6193 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5330 | 6194 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
5331 | 6195 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
5332 | 6196 | 8.645110 | CCCTCCGTTCCTAAATATAAGTCTTTA | 58.355 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
5349 | 6213 | 7.989947 | AGTCTTTATAGGGTTTCCACTATGA | 57.010 | 36.000 | 0.00 | 0.00 | 32.51 | 2.15 |
5350 | 6214 | 8.388656 | AGTCTTTATAGGGTTTCCACTATGAA | 57.611 | 34.615 | 0.00 | 0.00 | 32.51 | 2.57 |
5351 | 6215 | 9.004231 | AGTCTTTATAGGGTTTCCACTATGAAT | 57.996 | 33.333 | 0.00 | 0.00 | 32.51 | 2.57 |
5352 | 6216 | 9.628500 | GTCTTTATAGGGTTTCCACTATGAATT | 57.372 | 33.333 | 0.00 | 0.00 | 32.51 | 2.17 |
5359 | 6223 | 6.990349 | AGGGTTTCCACTATGAATTACATACG | 59.010 | 38.462 | 0.00 | 0.00 | 36.63 | 3.06 |
5360 | 6224 | 6.204108 | GGGTTTCCACTATGAATTACATACGG | 59.796 | 42.308 | 0.00 | 0.00 | 40.07 | 4.02 |
5361 | 6225 | 6.987992 | GGTTTCCACTATGAATTACATACGGA | 59.012 | 38.462 | 0.00 | 0.00 | 40.07 | 4.69 |
5362 | 6226 | 7.660208 | GGTTTCCACTATGAATTACATACGGAT | 59.340 | 37.037 | 0.00 | 0.00 | 37.58 | 4.18 |
5363 | 6227 | 8.495949 | GTTTCCACTATGAATTACATACGGATG | 58.504 | 37.037 | 5.94 | 5.94 | 37.58 | 3.51 |
5365 | 6229 | 8.411991 | TCCACTATGAATTACATACGGATGTA | 57.588 | 34.615 | 16.71 | 16.71 | 44.77 | 2.29 |
5366 | 6230 | 9.031537 | TCCACTATGAATTACATACGGATGTAT | 57.968 | 33.333 | 20.99 | 7.47 | 45.77 | 2.29 |
5379 | 6243 | 9.890629 | ACATACGGATGTATATAGATGCATTTT | 57.109 | 29.630 | 12.79 | 0.00 | 44.77 | 1.82 |
5383 | 6247 | 9.944376 | ACGGATGTATATAGATGCATTTTAAGT | 57.056 | 29.630 | 11.19 | 0.00 | 38.38 | 2.24 |
5385 | 6249 | 9.994432 | GGATGTATATAGATGCATTTTAAGTGC | 57.006 | 33.333 | 0.00 | 5.47 | 38.38 | 4.40 |
5386 | 6250 | 9.694520 | GATGTATATAGATGCATTTTAAGTGCG | 57.305 | 33.333 | 0.00 | 0.00 | 45.37 | 5.34 |
5387 | 6251 | 8.028540 | TGTATATAGATGCATTTTAAGTGCGG | 57.971 | 34.615 | 0.00 | 0.00 | 45.37 | 5.69 |
5388 | 6252 | 7.875554 | TGTATATAGATGCATTTTAAGTGCGGA | 59.124 | 33.333 | 0.00 | 0.00 | 45.37 | 5.54 |
5389 | 6253 | 7.928307 | ATATAGATGCATTTTAAGTGCGGAT | 57.072 | 32.000 | 0.00 | 0.00 | 45.37 | 4.18 |
5390 | 6254 | 4.989279 | AGATGCATTTTAAGTGCGGATT | 57.011 | 36.364 | 0.00 | 0.00 | 45.37 | 3.01 |
5391 | 6255 | 4.925068 | AGATGCATTTTAAGTGCGGATTC | 58.075 | 39.130 | 0.00 | 3.04 | 45.37 | 2.52 |
5392 | 6256 | 4.398988 | AGATGCATTTTAAGTGCGGATTCA | 59.601 | 37.500 | 0.00 | 0.00 | 45.37 | 2.57 |
5393 | 6257 | 4.717233 | TGCATTTTAAGTGCGGATTCAT | 57.283 | 36.364 | 7.87 | 0.00 | 45.37 | 2.57 |
5394 | 6258 | 5.070770 | TGCATTTTAAGTGCGGATTCATT | 57.929 | 34.783 | 7.87 | 0.00 | 45.37 | 2.57 |
5395 | 6259 | 5.101628 | TGCATTTTAAGTGCGGATTCATTC | 58.898 | 37.500 | 7.87 | 0.00 | 45.37 | 2.67 |
5396 | 6260 | 5.101628 | GCATTTTAAGTGCGGATTCATTCA | 58.898 | 37.500 | 0.00 | 0.00 | 32.29 | 2.57 |
5397 | 6261 | 5.750067 | GCATTTTAAGTGCGGATTCATTCAT | 59.250 | 36.000 | 0.00 | 0.00 | 32.29 | 2.57 |
5398 | 6262 | 6.256321 | GCATTTTAAGTGCGGATTCATTCATT | 59.744 | 34.615 | 0.00 | 0.00 | 32.29 | 2.57 |
5399 | 6263 | 7.201548 | GCATTTTAAGTGCGGATTCATTCATTT | 60.202 | 33.333 | 0.00 | 0.00 | 32.29 | 2.32 |
5400 | 6264 | 8.658609 | CATTTTAAGTGCGGATTCATTCATTTT | 58.341 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
5401 | 6265 | 7.579589 | TTTAAGTGCGGATTCATTCATTTTG | 57.420 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5402 | 6266 | 3.514645 | AGTGCGGATTCATTCATTTTGC | 58.485 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
5403 | 6267 | 3.194116 | AGTGCGGATTCATTCATTTTGCT | 59.806 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
5404 | 6268 | 3.549070 | GTGCGGATTCATTCATTTTGCTC | 59.451 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
5405 | 6269 | 3.118542 | GCGGATTCATTCATTTTGCTCC | 58.881 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
5406 | 6270 | 3.365832 | CGGATTCATTCATTTTGCTCCG | 58.634 | 45.455 | 0.00 | 0.00 | 38.51 | 4.63 |
5407 | 6271 | 3.181497 | CGGATTCATTCATTTTGCTCCGT | 60.181 | 43.478 | 0.00 | 0.00 | 39.53 | 4.69 |
5408 | 6272 | 4.035091 | CGGATTCATTCATTTTGCTCCGTA | 59.965 | 41.667 | 0.00 | 0.00 | 39.53 | 4.02 |
5409 | 6273 | 5.277974 | CGGATTCATTCATTTTGCTCCGTAT | 60.278 | 40.000 | 0.00 | 0.00 | 39.53 | 3.06 |
5410 | 6274 | 5.916883 | GGATTCATTCATTTTGCTCCGTATG | 59.083 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
5411 | 6275 | 5.895636 | TTCATTCATTTTGCTCCGTATGT | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
5412 | 6276 | 6.993786 | TTCATTCATTTTGCTCCGTATGTA | 57.006 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
5413 | 6277 | 6.603237 | TCATTCATTTTGCTCCGTATGTAG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
5414 | 6278 | 4.875544 | TTCATTTTGCTCCGTATGTAGC | 57.124 | 40.909 | 0.00 | 0.00 | 39.25 | 3.58 |
5415 | 6279 | 3.202906 | TCATTTTGCTCCGTATGTAGCC | 58.797 | 45.455 | 0.00 | 0.00 | 37.97 | 3.93 |
5416 | 6280 | 2.032680 | TTTTGCTCCGTATGTAGCCC | 57.967 | 50.000 | 0.00 | 0.00 | 37.97 | 5.19 |
5417 | 6281 | 0.906066 | TTTGCTCCGTATGTAGCCCA | 59.094 | 50.000 | 0.00 | 0.00 | 37.97 | 5.36 |
5418 | 6282 | 1.128200 | TTGCTCCGTATGTAGCCCAT | 58.872 | 50.000 | 0.00 | 0.00 | 37.97 | 4.00 |
5419 | 6283 | 0.679505 | TGCTCCGTATGTAGCCCATC | 59.320 | 55.000 | 0.00 | 0.00 | 37.97 | 3.51 |
5420 | 6284 | 0.969894 | GCTCCGTATGTAGCCCATCT | 59.030 | 55.000 | 0.00 | 0.00 | 34.86 | 2.90 |
5421 | 6285 | 2.168496 | GCTCCGTATGTAGCCCATCTA | 58.832 | 52.381 | 0.00 | 0.00 | 34.86 | 1.98 |
5422 | 6286 | 2.164624 | GCTCCGTATGTAGCCCATCTAG | 59.835 | 54.545 | 0.00 | 0.00 | 34.86 | 2.43 |
5423 | 6287 | 3.422796 | CTCCGTATGTAGCCCATCTAGT | 58.577 | 50.000 | 0.00 | 0.00 | 34.86 | 2.57 |
5424 | 6288 | 3.154710 | TCCGTATGTAGCCCATCTAGTG | 58.845 | 50.000 | 0.00 | 0.00 | 34.86 | 2.74 |
5442 | 6306 | 9.442047 | CATCTAGTGGAATTTCTACAAAGACTT | 57.558 | 33.333 | 14.38 | 2.08 | 29.78 | 3.01 |
5444 | 6308 | 9.924650 | TCTAGTGGAATTTCTACAAAGACTTAC | 57.075 | 33.333 | 14.38 | 0.00 | 29.47 | 2.34 |
5445 | 6309 | 9.706691 | CTAGTGGAATTTCTACAAAGACTTACA | 57.293 | 33.333 | 14.38 | 0.00 | 29.47 | 2.41 |
5447 | 6311 | 9.574516 | AGTGGAATTTCTACAAAGACTTACATT | 57.425 | 29.630 | 14.38 | 0.00 | 29.47 | 2.71 |
5455 | 6319 | 8.752766 | TCTACAAAGACTTACATTTAGGAACG | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 3.95 |
5456 | 6320 | 6.796705 | ACAAAGACTTACATTTAGGAACGG | 57.203 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
5457 | 6321 | 6.527423 | ACAAAGACTTACATTTAGGAACGGA | 58.473 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5458 | 6322 | 6.649557 | ACAAAGACTTACATTTAGGAACGGAG | 59.350 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
5459 | 6323 | 5.340439 | AGACTTACATTTAGGAACGGAGG | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
5460 | 6324 | 4.161754 | AGACTTACATTTAGGAACGGAGGG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
5461 | 6325 | 4.098894 | ACTTACATTTAGGAACGGAGGGA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
5462 | 6326 | 4.161754 | ACTTACATTTAGGAACGGAGGGAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
5463 | 6327 | 2.547990 | ACATTTAGGAACGGAGGGAGT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
5464 | 6328 | 3.716431 | ACATTTAGGAACGGAGGGAGTA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
5465 | 6329 | 4.296056 | ACATTTAGGAACGGAGGGAGTAT | 58.704 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
5466 | 6330 | 4.720273 | ACATTTAGGAACGGAGGGAGTATT | 59.280 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
5481 | 6345 | 3.432326 | GGAGTATTGGTTAGTCTGCCTGG | 60.432 | 52.174 | 0.00 | 0.00 | 31.82 | 4.45 |
5483 | 6347 | 4.359105 | AGTATTGGTTAGTCTGCCTGGTA | 58.641 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
5488 | 6352 | 7.626999 | ATTGGTTAGTCTGCCTGGTAATATA | 57.373 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
5492 | 6356 | 9.161572 | TGGTTAGTCTGCCTGGTAATATATAAA | 57.838 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5511 | 6375 | 4.787260 | AAATAACATGTGCTGATGTGCA | 57.213 | 36.364 | 0.00 | 0.00 | 36.66 | 4.57 |
5512 | 6376 | 4.994907 | AATAACATGTGCTGATGTGCAT | 57.005 | 36.364 | 0.00 | 0.00 | 45.23 | 3.96 |
5513 | 6377 | 4.994907 | ATAACATGTGCTGATGTGCATT | 57.005 | 36.364 | 0.00 | 0.00 | 45.23 | 3.56 |
5514 | 6378 | 3.671008 | AACATGTGCTGATGTGCATTT | 57.329 | 38.095 | 0.00 | 0.00 | 45.23 | 2.32 |
5515 | 6379 | 3.226346 | ACATGTGCTGATGTGCATTTC | 57.774 | 42.857 | 0.00 | 0.00 | 45.23 | 2.17 |
5516 | 6380 | 2.182014 | CATGTGCTGATGTGCATTTCG | 58.818 | 47.619 | 0.00 | 0.00 | 45.23 | 3.46 |
5517 | 6381 | 0.522626 | TGTGCTGATGTGCATTTCGG | 59.477 | 50.000 | 0.00 | 0.00 | 45.23 | 4.30 |
5518 | 6382 | 0.179156 | GTGCTGATGTGCATTTCGGG | 60.179 | 55.000 | 9.07 | 0.56 | 45.23 | 5.14 |
5519 | 6383 | 1.226773 | GCTGATGTGCATTTCGGGC | 60.227 | 57.895 | 9.07 | 5.69 | 0.00 | 6.13 |
5520 | 6384 | 1.936436 | GCTGATGTGCATTTCGGGCA | 61.936 | 55.000 | 9.07 | 0.00 | 39.32 | 5.36 |
5521 | 6385 | 0.527113 | CTGATGTGCATTTCGGGCAA | 59.473 | 50.000 | 0.00 | 0.00 | 43.91 | 4.52 |
5522 | 6386 | 1.135527 | CTGATGTGCATTTCGGGCAAT | 59.864 | 47.619 | 0.00 | 0.00 | 43.91 | 3.56 |
5523 | 6387 | 1.549620 | TGATGTGCATTTCGGGCAATT | 59.450 | 42.857 | 0.00 | 0.00 | 43.91 | 2.32 |
5524 | 6388 | 2.028294 | TGATGTGCATTTCGGGCAATTT | 60.028 | 40.909 | 0.00 | 0.00 | 43.91 | 1.82 |
5525 | 6389 | 2.540265 | TGTGCATTTCGGGCAATTTT | 57.460 | 40.000 | 0.00 | 0.00 | 43.91 | 1.82 |
5526 | 6390 | 2.843701 | TGTGCATTTCGGGCAATTTTT | 58.156 | 38.095 | 0.00 | 0.00 | 43.91 | 1.94 |
5548 | 6412 | 1.179814 | TTTTTGCGGGTACGGGCAAT | 61.180 | 50.000 | 18.94 | 0.00 | 45.10 | 3.56 |
5570 | 6434 | 8.567948 | GCAATTATGGTATGCTTGTAGTGTTAT | 58.432 | 33.333 | 0.00 | 0.00 | 37.12 | 1.89 |
5598 | 6462 | 5.525378 | CAGGTTACTTCCTGCTATTCATGTC | 59.475 | 44.000 | 0.00 | 0.00 | 46.53 | 3.06 |
5610 | 6474 | 1.808411 | TTCATGTCCTTTGTCGCTCC | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
5635 | 6499 | 1.585297 | AACCTTTGCAAGCATGTTGC | 58.415 | 45.000 | 19.66 | 19.66 | 45.46 | 4.17 |
5636 | 6500 | 0.249996 | ACCTTTGCAAGCATGTTGCC | 60.250 | 50.000 | 22.02 | 10.68 | 46.52 | 4.52 |
5638 | 6502 | 1.286354 | CTTTGCAAGCATGTTGCCCG | 61.286 | 55.000 | 22.02 | 11.67 | 46.52 | 6.13 |
5644 | 6508 | 1.745087 | CAAGCATGTTGCCCGTATTCT | 59.255 | 47.619 | 0.00 | 0.00 | 46.52 | 2.40 |
5679 | 6543 | 0.551396 | AGGTTTGCCCCTACCATAGC | 59.449 | 55.000 | 0.00 | 0.00 | 36.87 | 2.97 |
5691 | 6555 | 1.048601 | ACCATAGCTGTCCATACGGG | 58.951 | 55.000 | 0.00 | 0.00 | 38.37 | 5.28 |
5721 | 6585 | 3.839490 | TCCATTGTAAAGACCTCGGGTTA | 59.161 | 43.478 | 0.00 | 0.00 | 35.25 | 2.85 |
5747 | 6639 | 1.607148 | GAGTTACACAGGCCAAACACC | 59.393 | 52.381 | 5.01 | 0.00 | 0.00 | 4.16 |
5766 | 6658 | 7.404671 | AACACCAAAGTTGAGAACACTTTAT | 57.595 | 32.000 | 0.00 | 0.00 | 33.05 | 1.40 |
5767 | 6659 | 7.404671 | ACACCAAAGTTGAGAACACTTTATT | 57.595 | 32.000 | 0.00 | 0.00 | 33.05 | 1.40 |
5768 | 6660 | 8.514330 | ACACCAAAGTTGAGAACACTTTATTA | 57.486 | 30.769 | 0.00 | 0.00 | 33.05 | 0.98 |
5769 | 6661 | 9.131791 | ACACCAAAGTTGAGAACACTTTATTAT | 57.868 | 29.630 | 0.00 | 0.00 | 33.05 | 1.28 |
5781 | 6673 | 6.505044 | ACACTTTATTATTTTGGGACGGAC | 57.495 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
5783 | 6675 | 4.637091 | ACTTTATTATTTTGGGACGGACCG | 59.363 | 41.667 | 13.61 | 13.61 | 40.11 | 4.79 |
5823 | 6715 | 0.036732 | TCCATATTCCGGCATGCTCC | 59.963 | 55.000 | 18.92 | 0.00 | 0.00 | 4.70 |
5839 | 6731 | 5.220854 | GCATGCTCCGATATGTTGTAAAACT | 60.221 | 40.000 | 11.37 | 0.00 | 0.00 | 2.66 |
5841 | 6733 | 7.567571 | CATGCTCCGATATGTTGTAAAACTAG | 58.432 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
5849 | 6741 | 9.671521 | CGATATGTTGTAAAACTAGTTTCTTCG | 57.328 | 33.333 | 20.78 | 13.53 | 31.45 | 3.79 |
5867 | 6759 | 4.328983 | TCTTCGACAGTGACAACAAAGAAC | 59.671 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
5874 | 6766 | 4.034510 | CAGTGACAACAAAGAACTCTCCAC | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
5889 | 6781 | 2.358898 | TCTCCACTTGTGCAAAAAGCTC | 59.641 | 45.455 | 9.71 | 0.00 | 45.94 | 4.09 |
5890 | 6782 | 2.360165 | CTCCACTTGTGCAAAAAGCTCT | 59.640 | 45.455 | 9.71 | 0.00 | 45.94 | 4.09 |
5891 | 6783 | 2.099592 | TCCACTTGTGCAAAAAGCTCTG | 59.900 | 45.455 | 9.71 | 2.57 | 45.94 | 3.35 |
5897 | 6789 | 2.957680 | TGTGCAAAAAGCTCTGATCCAA | 59.042 | 40.909 | 0.00 | 0.00 | 45.94 | 3.53 |
5908 | 6800 | 3.574749 | CTCTGATCCAAGATCCTCCTCA | 58.425 | 50.000 | 2.29 | 0.00 | 0.00 | 3.86 |
5946 | 8780 | 5.124457 | ACATGTGATTGCTTACCTGCTAAAG | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
5948 | 8782 | 4.695455 | TGTGATTGCTTACCTGCTAAAGAC | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
5952 | 8786 | 6.434028 | TGATTGCTTACCTGCTAAAGACATTT | 59.566 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
89 | 94 | 6.994496 | ACATAATACTCATGCAGCAATGTACT | 59.006 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
91 | 96 | 6.205270 | CCACATAATACTCATGCAGCAATGTA | 59.795 | 38.462 | 0.00 | 3.56 | 0.00 | 2.29 |
161 | 166 | 6.362551 | CGTATCATAGACGATGTACCTTTTGG | 59.637 | 42.308 | 0.00 | 0.00 | 42.98 | 3.28 |
185 | 190 | 7.081349 | TCCAGTTCAAATACAAATGCTAAACG | 58.919 | 34.615 | 0.00 | 0.00 | 0.00 | 3.60 |
222 | 227 | 4.002982 | AGATCACTTGTTGAATGCGCTTA | 58.997 | 39.130 | 9.73 | 0.00 | 37.92 | 3.09 |
517 | 909 | 3.998672 | GCGAGGTTGGTCCGGACA | 61.999 | 66.667 | 34.40 | 18.59 | 41.99 | 4.02 |
518 | 910 | 4.754667 | GGCGAGGTTGGTCCGGAC | 62.755 | 72.222 | 27.04 | 27.04 | 41.99 | 4.79 |
542 | 934 | 1.635663 | GGCGACTGTATGTGTGTGCC | 61.636 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
545 | 937 | 1.135489 | CGTAGGCGACTGTATGTGTGT | 60.135 | 52.381 | 0.00 | 0.00 | 43.88 | 3.72 |
570 | 962 | 0.622665 | AGGAGCCTGAGGGTTTCATG | 59.377 | 55.000 | 4.00 | 0.00 | 34.68 | 3.07 |
576 | 968 | 2.530151 | TTGCAGGAGCCTGAGGGT | 60.530 | 61.111 | 20.29 | 1.18 | 46.30 | 4.34 |
587 | 979 | 0.535780 | TTGTGTGCTCTCCTTGCAGG | 60.536 | 55.000 | 0.00 | 0.00 | 41.41 | 4.85 |
631 | 1023 | 1.615124 | TCGGATTCAGCTCCCCCAA | 60.615 | 57.895 | 0.00 | 0.00 | 31.04 | 4.12 |
652 | 1044 | 0.695347 | ACTAGCTTGCTTCTTGCCCT | 59.305 | 50.000 | 0.00 | 0.00 | 42.00 | 5.19 |
663 | 1055 | 0.103208 | CGCTCCCAGGTACTAGCTTG | 59.897 | 60.000 | 0.00 | 0.00 | 35.57 | 4.01 |
665 | 1057 | 1.455959 | CCGCTCCCAGGTACTAGCT | 60.456 | 63.158 | 0.00 | 0.00 | 35.57 | 3.32 |
666 | 1058 | 2.499827 | CCCGCTCCCAGGTACTAGC | 61.500 | 68.421 | 0.00 | 0.00 | 36.02 | 3.42 |
667 | 1059 | 2.499827 | GCCCGCTCCCAGGTACTAG | 61.500 | 68.421 | 0.00 | 0.00 | 36.02 | 2.57 |
668 | 1060 | 2.443390 | GCCCGCTCCCAGGTACTA | 60.443 | 66.667 | 0.00 | 0.00 | 36.02 | 1.82 |
692 | 1084 | 1.152368 | CCTCCTCCAATCCCATGCC | 59.848 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
695 | 1087 | 1.384502 | TCGCCTCCTCCAATCCCAT | 60.385 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
714 | 1106 | 2.430244 | CCCCGTCACGAGTTCACG | 60.430 | 66.667 | 0.00 | 0.00 | 39.31 | 4.35 |
721 | 1113 | 3.572447 | TAGCTCACCCCCGTCACGA | 62.572 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
724 | 1116 | 3.066190 | CGTAGCTCACCCCCGTCA | 61.066 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
733 | 1125 | 1.987855 | CCCCTTCACCCGTAGCTCA | 60.988 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
738 | 1130 | 2.686106 | GGAGCCCCTTCACCCGTA | 60.686 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
841 | 1236 | 6.481984 | GCGTTTTCTATTTCTCCATCTTCAG | 58.518 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
845 | 1240 | 4.755411 | TCGCGTTTTCTATTTCTCCATCT | 58.245 | 39.130 | 5.77 | 0.00 | 0.00 | 2.90 |
848 | 1243 | 4.312443 | ACTTCGCGTTTTCTATTTCTCCA | 58.688 | 39.130 | 5.77 | 0.00 | 0.00 | 3.86 |
850 | 1245 | 5.080068 | CCAACTTCGCGTTTTCTATTTCTC | 58.920 | 41.667 | 5.77 | 0.00 | 32.27 | 2.87 |
861 | 1256 | 1.522130 | AACGGTCCAACTTCGCGTT | 60.522 | 52.632 | 5.77 | 0.00 | 35.88 | 4.84 |
863 | 1258 | 2.549282 | CAACGGTCCAACTTCGCG | 59.451 | 61.111 | 0.00 | 0.00 | 0.00 | 5.87 |
870 | 1265 | 2.869101 | TCATCAATCCAACGGTCCAA | 57.131 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
887 | 1282 | 1.302366 | GCGATCTGTGCCATTCATCA | 58.698 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
904 | 1299 | 2.960957 | CTACGGATCCCAGCACTGCG | 62.961 | 65.000 | 6.06 | 0.00 | 0.00 | 5.18 |
924 | 1319 | 2.364632 | CATTCCCCTCATTTGCGTGTA | 58.635 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
929 | 1324 | 1.551883 | ACAAGCATTCCCCTCATTTGC | 59.448 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
942 | 1339 | 3.019564 | GGACCTCTTTGCATACAAGCAT | 58.980 | 45.455 | 0.00 | 0.00 | 45.19 | 3.79 |
948 | 1345 | 1.207329 | ACGAGGGACCTCTTTGCATAC | 59.793 | 52.381 | 15.83 | 0.00 | 40.69 | 2.39 |
991 | 1388 | 0.915364 | GTGGCTTGAAGGAGGAGGAT | 59.085 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1024 | 1421 | 3.462199 | GATAGGCGGGAGTGGTGGC | 62.462 | 68.421 | 0.00 | 0.00 | 0.00 | 5.01 |
1096 | 1493 | 1.544151 | GGAAGGGAAGGGAAGGGGT | 60.544 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
1111 | 1508 | 2.295602 | GGCGGGAGTAGTTGGGGAA | 61.296 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
1112 | 1509 | 2.686106 | GGCGGGAGTAGTTGGGGA | 60.686 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
1113 | 1510 | 4.157120 | CGGCGGGAGTAGTTGGGG | 62.157 | 72.222 | 0.00 | 0.00 | 0.00 | 4.96 |
1114 | 1511 | 2.573609 | CTTCGGCGGGAGTAGTTGGG | 62.574 | 65.000 | 7.21 | 0.00 | 0.00 | 4.12 |
1115 | 1512 | 1.153628 | CTTCGGCGGGAGTAGTTGG | 60.154 | 63.158 | 7.21 | 0.00 | 0.00 | 3.77 |
1118 | 1515 | 3.459063 | GCCTTCGGCGGGAGTAGT | 61.459 | 66.667 | 7.21 | 0.00 | 39.62 | 2.73 |
1156 | 1553 | 0.107897 | TTCCCGTTCGATGATGTGGG | 60.108 | 55.000 | 0.00 | 0.00 | 38.02 | 4.61 |
1225 | 1622 | 2.423898 | CCTCCCGCCGTAGATGTGT | 61.424 | 63.158 | 0.00 | 0.00 | 0.00 | 3.72 |
1244 | 1641 | 4.737476 | AGCAGGGCAGGGAGAGCT | 62.737 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
1245 | 1642 | 4.173924 | GAGCAGGGCAGGGAGAGC | 62.174 | 72.222 | 0.00 | 0.00 | 0.00 | 4.09 |
1246 | 1643 | 3.847602 | CGAGCAGGGCAGGGAGAG | 61.848 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
1373 | 1788 | 7.749666 | ACAGGAGGCTTGTTACATGATTATAT | 58.250 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
1376 | 1791 | 5.435686 | ACAGGAGGCTTGTTACATGATTA | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
1380 | 1795 | 6.648310 | CAGATATACAGGAGGCTTGTTACATG | 59.352 | 42.308 | 0.00 | 0.00 | 0.00 | 3.21 |
1383 | 1798 | 5.542779 | CCAGATATACAGGAGGCTTGTTAC | 58.457 | 45.833 | 0.00 | 0.00 | 0.00 | 2.50 |
1392 | 1807 | 6.582636 | TGTAGTTTTGCCAGATATACAGGAG | 58.417 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1399 | 1814 | 6.721318 | TCTTCCTTGTAGTTTTGCCAGATAT | 58.279 | 36.000 | 0.00 | 0.00 | 0.00 | 1.63 |
1407 | 1828 | 7.108847 | AGGATCTGATCTTCCTTGTAGTTTTG | 58.891 | 38.462 | 16.61 | 0.00 | 39.36 | 2.44 |
1545 | 1974 | 4.100189 | AGCTATGTAAACCTAGAGTGCAGG | 59.900 | 45.833 | 0.00 | 0.00 | 39.25 | 4.85 |
1583 | 2012 | 6.073167 | TCGAGTTCAGTAAGACTAGTGAGTTG | 60.073 | 42.308 | 0.00 | 0.00 | 38.45 | 3.16 |
1593 | 2022 | 7.085116 | TCTTCAAATCTCGAGTTCAGTAAGAC | 58.915 | 38.462 | 13.13 | 0.00 | 0.00 | 3.01 |
1604 | 2033 | 4.150627 | TGCTCGTTTTCTTCAAATCTCGAG | 59.849 | 41.667 | 5.93 | 5.93 | 38.77 | 4.04 |
1627 | 2056 | 8.282256 | ACCTTAATAATTTGGCTACTGGAGAAT | 58.718 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
1632 | 2061 | 9.574516 | AGATTACCTTAATAATTTGGCTACTGG | 57.425 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
1659 | 2088 | 6.707161 | TGGCTGAAGAATTTTTGGAAGATTTG | 59.293 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
1662 | 2091 | 5.305128 | TGTGGCTGAAGAATTTTTGGAAGAT | 59.695 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1726 | 2167 | 1.022451 | CCGACAATACAACCGGGTGG | 61.022 | 60.000 | 26.30 | 8.35 | 38.42 | 4.61 |
1728 | 2169 | 0.397564 | AACCGACAATACAACCGGGT | 59.602 | 50.000 | 6.32 | 0.00 | 45.63 | 5.28 |
1761 | 2202 | 7.807977 | ATCATTATCACCAACATAGACCAAC | 57.192 | 36.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1831 | 2272 | 1.701704 | AACGAGTAAACCGGCGTTAG | 58.298 | 50.000 | 12.62 | 0.00 | 44.07 | 2.34 |
1896 | 2358 | 5.472137 | ACACATGTTAAACACCGATTAAGCT | 59.528 | 36.000 | 0.00 | 0.00 | 0.00 | 3.74 |
1941 | 2403 | 4.440525 | CCATTCATCACGAGGGGAAATTTG | 60.441 | 45.833 | 0.00 | 0.00 | 0.00 | 2.32 |
2047 | 2509 | 2.762887 | TGGTTGTCAATTTTGTGCCAGA | 59.237 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
2117 | 2579 | 4.192317 | CCAGGTTAGCATGGTCTTACTTC | 58.808 | 47.826 | 0.00 | 0.00 | 41.31 | 3.01 |
2154 | 2624 | 6.127814 | CCATATAATGCAATCTCACATGTCCC | 60.128 | 42.308 | 0.00 | 0.00 | 0.00 | 4.46 |
2169 | 2639 | 8.697846 | TCGCAAGTAATACTACCATATAATGC | 57.302 | 34.615 | 0.00 | 0.00 | 39.48 | 3.56 |
2191 | 2661 | 5.799936 | ACACATTATTTTGCACAATACTCGC | 59.200 | 36.000 | 4.79 | 0.00 | 0.00 | 5.03 |
2282 | 2752 | 2.680577 | CCTGCACAAAAGGAAGATTGC | 58.319 | 47.619 | 0.00 | 0.00 | 36.91 | 3.56 |
2283 | 2753 | 2.298163 | AGCCTGCACAAAAGGAAGATTG | 59.702 | 45.455 | 0.00 | 0.00 | 36.91 | 2.67 |
2349 | 2821 | 9.980780 | GTTTAATCTCTTTCTGCATTCTTAGAC | 57.019 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2401 | 2873 | 7.398618 | TCCTCATCAGACAGATTAAGAGAAACT | 59.601 | 37.037 | 0.00 | 0.00 | 33.72 | 2.66 |
2499 | 2971 | 2.489938 | TAGGCACTGTTTGGGATGAC | 57.510 | 50.000 | 0.00 | 0.00 | 41.52 | 3.06 |
2543 | 3225 | 6.929049 | AGTAGAAAAGTCACATCAAATCGACA | 59.071 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
2727 | 3412 | 5.595952 | GGAGGTTGAAAAGGATATCTGCATT | 59.404 | 40.000 | 2.05 | 0.00 | 0.00 | 3.56 |
3221 | 4031 | 5.451937 | CGGATTAGCATACTTCTGAGTCCAA | 60.452 | 44.000 | 0.00 | 0.00 | 37.33 | 3.53 |
3228 | 4038 | 3.062763 | CTGCCGGATTAGCATACTTCTG | 58.937 | 50.000 | 5.05 | 0.00 | 40.04 | 3.02 |
3379 | 4189 | 4.823989 | CAGGTTCTGTGAGTTCTCCATTTT | 59.176 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
3437 | 4247 | 2.545731 | GCATCTTCTTTCGACTCCCTC | 58.454 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3548 | 4358 | 1.961394 | GAGTGGATACTGCCGTGGATA | 59.039 | 52.381 | 0.00 | 0.00 | 37.25 | 2.59 |
3624 | 4434 | 4.445453 | CACTATCAGCACTGGCAGAAATA | 58.555 | 43.478 | 23.66 | 9.61 | 44.61 | 1.40 |
3639 | 4449 | 9.567776 | TGTTTCTTTGAAATTACTCCACTATCA | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
3743 | 4553 | 0.469917 | ACCTTCCACACTGTCACTGG | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3749 | 4559 | 2.105993 | GGGAACTTACCTTCCACACTGT | 59.894 | 50.000 | 0.59 | 0.00 | 41.57 | 3.55 |
3766 | 4576 | 2.649312 | ACACTGGAAGATGATTGGGGAA | 59.351 | 45.455 | 0.00 | 0.00 | 37.43 | 3.97 |
4006 | 4816 | 7.121168 | CAGATTATTAAAACCTGGCAGTGAAGA | 59.879 | 37.037 | 14.43 | 0.00 | 0.00 | 2.87 |
4012 | 4822 | 5.357878 | TCTGCAGATTATTAAAACCTGGCAG | 59.642 | 40.000 | 13.74 | 7.75 | 34.00 | 4.85 |
4015 | 4825 | 9.143631 | CTTTTTCTGCAGATTATTAAAACCTGG | 57.856 | 33.333 | 19.04 | 5.38 | 0.00 | 4.45 |
4040 | 4850 | 4.982241 | TCCTTTGAAACATCTGAGGACT | 57.018 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
4107 | 4917 | 5.626142 | TGGGTTTTAGAAAGTACATGCTCA | 58.374 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
4252 | 5062 | 7.675161 | TCCTATCATCCTGTGAACAATTAGA | 57.325 | 36.000 | 0.00 | 0.00 | 40.97 | 2.10 |
4314 | 5124 | 3.003763 | AGGTCCCTGGTTCGGCTC | 61.004 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
4357 | 5167 | 1.019278 | GGACGATCGCTTTGGCTGAA | 61.019 | 55.000 | 16.60 | 0.00 | 36.09 | 3.02 |
4666 | 5489 | 4.012374 | GGGACATCTTCATCTTCAAAGCA | 58.988 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
4744 | 5567 | 3.188254 | CACAACAGTCGCCACATCATAAA | 59.812 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
4962 | 5789 | 9.630098 | ATCAATTTTACTGAACAAGCAAGTATG | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 2.39 |
4966 | 5793 | 9.683069 | ACTTATCAATTTTACTGAACAAGCAAG | 57.317 | 29.630 | 0.00 | 0.00 | 0.00 | 4.01 |
5032 | 5859 | 9.028284 | TGCTCACAGATATATGATTAGATGTGA | 57.972 | 33.333 | 3.93 | 4.80 | 42.38 | 3.58 |
5033 | 5860 | 9.649167 | TTGCTCACAGATATATGATTAGATGTG | 57.351 | 33.333 | 3.93 | 0.00 | 38.46 | 3.21 |
5034 | 5861 | 9.872721 | CTTGCTCACAGATATATGATTAGATGT | 57.127 | 33.333 | 3.93 | 0.00 | 0.00 | 3.06 |
5035 | 5862 | 8.819015 | GCTTGCTCACAGATATATGATTAGATG | 58.181 | 37.037 | 3.93 | 0.00 | 0.00 | 2.90 |
5036 | 5863 | 8.760735 | AGCTTGCTCACAGATATATGATTAGAT | 58.239 | 33.333 | 3.93 | 0.00 | 0.00 | 1.98 |
5038 | 5865 | 7.220491 | CGAGCTTGCTCACAGATATATGATTAG | 59.780 | 40.741 | 20.59 | 0.00 | 0.00 | 1.73 |
5040 | 5867 | 5.868258 | CGAGCTTGCTCACAGATATATGATT | 59.132 | 40.000 | 20.59 | 0.00 | 0.00 | 2.57 |
5115 | 5972 | 3.243401 | GCCAGGAAATAAATGGGCTTACG | 60.243 | 47.826 | 0.00 | 0.00 | 38.37 | 3.18 |
5126 | 5983 | 1.173043 | CACCGCTTGCCAGGAAATAA | 58.827 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5137 | 5994 | 3.173599 | CAAATACAGAATGCACCGCTTG | 58.826 | 45.455 | 0.00 | 0.00 | 42.53 | 4.01 |
5141 | 5998 | 4.793071 | TGAAACAAATACAGAATGCACCG | 58.207 | 39.130 | 0.00 | 0.00 | 42.53 | 4.94 |
5204 | 6068 | 7.136119 | TCGGAAACAATCAGTACAAAATTGTC | 58.864 | 34.615 | 16.16 | 8.51 | 41.47 | 3.18 |
5216 | 6080 | 6.863126 | AGCTTGTAATTTTCGGAAACAATCAG | 59.137 | 34.615 | 1.96 | 0.00 | 0.00 | 2.90 |
5228 | 6092 | 4.617223 | GCGACCTTTCAGCTTGTAATTTTC | 59.383 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
5234 | 6098 | 2.248280 | TTGCGACCTTTCAGCTTGTA | 57.752 | 45.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5243 | 6107 | 7.148239 | CCATAGAGACTAAATTTTGCGACCTTT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
5249 | 6113 | 5.276868 | CGTCCCATAGAGACTAAATTTTGCG | 60.277 | 44.000 | 0.00 | 0.00 | 31.83 | 4.85 |
5256 | 6120 | 8.929260 | TTATATGACGTCCCATAGAGACTAAA | 57.071 | 34.615 | 14.12 | 0.00 | 33.08 | 1.85 |
5257 | 6121 | 8.380867 | TCTTATATGACGTCCCATAGAGACTAA | 58.619 | 37.037 | 14.12 | 1.07 | 33.08 | 2.24 |
5263 | 6127 | 6.603599 | CCTCATCTTATATGACGTCCCATAGA | 59.396 | 42.308 | 14.12 | 9.68 | 33.08 | 1.98 |
5272 | 6136 | 2.263077 | GGCGCCTCATCTTATATGACG | 58.737 | 52.381 | 22.15 | 0.00 | 0.00 | 4.35 |
5276 | 6140 | 1.556911 | CAGGGGCGCCTCATCTTATAT | 59.443 | 52.381 | 31.81 | 0.48 | 0.00 | 0.86 |
5282 | 6146 | 3.344137 | TTTCCAGGGGCGCCTCATC | 62.344 | 63.158 | 31.81 | 11.01 | 0.00 | 2.92 |
5287 | 6151 | 2.437895 | GTACTTTCCAGGGGCGCC | 60.438 | 66.667 | 21.18 | 21.18 | 0.00 | 6.53 |
5288 | 6152 | 1.449778 | GAGTACTTTCCAGGGGCGC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
5289 | 6153 | 1.221021 | GGAGTACTTTCCAGGGGCG | 59.779 | 63.158 | 0.00 | 0.00 | 37.20 | 6.13 |
5291 | 6155 | 1.205055 | GAGGGAGTACTTTCCAGGGG | 58.795 | 60.000 | 15.66 | 0.00 | 39.09 | 4.79 |
5292 | 6156 | 1.205055 | GGAGGGAGTACTTTCCAGGG | 58.795 | 60.000 | 15.66 | 0.00 | 39.09 | 4.45 |
5293 | 6157 | 0.824759 | CGGAGGGAGTACTTTCCAGG | 59.175 | 60.000 | 17.17 | 5.39 | 39.09 | 4.45 |
5296 | 6160 | 1.206610 | GGAACGGAGGGAGTACTTTCC | 59.793 | 57.143 | 0.00 | 0.27 | 36.46 | 3.13 |
5298 | 6162 | 2.322339 | AGGAACGGAGGGAGTACTTT | 57.678 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5300 | 6164 | 3.463048 | TTTAGGAACGGAGGGAGTACT | 57.537 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
5301 | 6165 | 7.232330 | ACTTATATTTAGGAACGGAGGGAGTAC | 59.768 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
5302 | 6166 | 7.300658 | ACTTATATTTAGGAACGGAGGGAGTA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
5303 | 6167 | 6.141790 | ACTTATATTTAGGAACGGAGGGAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5304 | 6168 | 6.494146 | AGACTTATATTTAGGAACGGAGGGAG | 59.506 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
5305 | 6169 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5306 | 6170 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
5323 | 6187 | 9.496710 | TCATAGTGGAAACCCTATAAAGACTTA | 57.503 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
5324 | 6188 | 8.388656 | TCATAGTGGAAACCCTATAAAGACTT | 57.611 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
5325 | 6189 | 7.989947 | TCATAGTGGAAACCCTATAAAGACT | 57.010 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5326 | 6190 | 9.628500 | AATTCATAGTGGAAACCCTATAAAGAC | 57.372 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
5333 | 6197 | 8.145767 | CGTATGTAATTCATAGTGGAAACCCTA | 58.854 | 37.037 | 0.00 | 0.00 | 39.36 | 3.53 |
5334 | 6198 | 6.990349 | CGTATGTAATTCATAGTGGAAACCCT | 59.010 | 38.462 | 0.00 | 0.00 | 39.36 | 4.34 |
5335 | 6199 | 6.204108 | CCGTATGTAATTCATAGTGGAAACCC | 59.796 | 42.308 | 8.73 | 0.00 | 39.36 | 4.11 |
5336 | 6200 | 6.987992 | TCCGTATGTAATTCATAGTGGAAACC | 59.012 | 38.462 | 11.90 | 0.00 | 39.60 | 3.27 |
5337 | 6201 | 8.495949 | CATCCGTATGTAATTCATAGTGGAAAC | 58.504 | 37.037 | 15.16 | 0.00 | 42.65 | 2.78 |
5338 | 6202 | 8.208224 | ACATCCGTATGTAATTCATAGTGGAAA | 58.792 | 33.333 | 15.16 | 3.76 | 44.66 | 3.13 |
5339 | 6203 | 7.732025 | ACATCCGTATGTAATTCATAGTGGAA | 58.268 | 34.615 | 15.16 | 0.00 | 44.66 | 3.53 |
5340 | 6204 | 7.297936 | ACATCCGTATGTAATTCATAGTGGA | 57.702 | 36.000 | 14.34 | 14.34 | 44.66 | 4.02 |
5357 | 6221 | 9.944376 | ACTTAAAATGCATCTATATACATCCGT | 57.056 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
5359 | 6223 | 9.994432 | GCACTTAAAATGCATCTATATACATCC | 57.006 | 33.333 | 0.00 | 0.00 | 42.88 | 3.51 |
5360 | 6224 | 9.694520 | CGCACTTAAAATGCATCTATATACATC | 57.305 | 33.333 | 0.00 | 0.00 | 43.57 | 3.06 |
5361 | 6225 | 8.668353 | CCGCACTTAAAATGCATCTATATACAT | 58.332 | 33.333 | 0.00 | 0.00 | 43.57 | 2.29 |
5362 | 6226 | 7.875554 | TCCGCACTTAAAATGCATCTATATACA | 59.124 | 33.333 | 0.00 | 0.00 | 43.57 | 2.29 |
5363 | 6227 | 8.251750 | TCCGCACTTAAAATGCATCTATATAC | 57.748 | 34.615 | 0.00 | 0.00 | 43.57 | 1.47 |
5364 | 6228 | 9.448438 | AATCCGCACTTAAAATGCATCTATATA | 57.552 | 29.630 | 0.00 | 0.00 | 43.57 | 0.86 |
5365 | 6229 | 7.928307 | ATCCGCACTTAAAATGCATCTATAT | 57.072 | 32.000 | 0.00 | 0.00 | 43.57 | 0.86 |
5366 | 6230 | 7.443879 | TGAATCCGCACTTAAAATGCATCTATA | 59.556 | 33.333 | 0.00 | 0.00 | 43.57 | 1.31 |
5367 | 6231 | 6.262944 | TGAATCCGCACTTAAAATGCATCTAT | 59.737 | 34.615 | 0.00 | 0.00 | 43.57 | 1.98 |
5368 | 6232 | 5.588246 | TGAATCCGCACTTAAAATGCATCTA | 59.412 | 36.000 | 0.00 | 0.00 | 43.57 | 1.98 |
5369 | 6233 | 4.398988 | TGAATCCGCACTTAAAATGCATCT | 59.601 | 37.500 | 0.00 | 0.00 | 43.57 | 2.90 |
5370 | 6234 | 4.671377 | TGAATCCGCACTTAAAATGCATC | 58.329 | 39.130 | 0.00 | 5.04 | 43.57 | 3.91 |
5371 | 6235 | 4.717233 | TGAATCCGCACTTAAAATGCAT | 57.283 | 36.364 | 10.95 | 0.00 | 43.57 | 3.96 |
5372 | 6236 | 4.717233 | ATGAATCCGCACTTAAAATGCA | 57.283 | 36.364 | 10.95 | 0.00 | 43.57 | 3.96 |
5373 | 6237 | 5.101628 | TGAATGAATCCGCACTTAAAATGC | 58.898 | 37.500 | 1.96 | 1.96 | 39.81 | 3.56 |
5374 | 6238 | 7.760131 | AATGAATGAATCCGCACTTAAAATG | 57.240 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
5375 | 6239 | 8.658609 | CAAAATGAATGAATCCGCACTTAAAAT | 58.341 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
5376 | 6240 | 7.359933 | GCAAAATGAATGAATCCGCACTTAAAA | 60.360 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
5377 | 6241 | 6.090628 | GCAAAATGAATGAATCCGCACTTAAA | 59.909 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
5378 | 6242 | 5.576384 | GCAAAATGAATGAATCCGCACTTAA | 59.424 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
5379 | 6243 | 5.101628 | GCAAAATGAATGAATCCGCACTTA | 58.898 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
5380 | 6244 | 3.928375 | GCAAAATGAATGAATCCGCACTT | 59.072 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
5381 | 6245 | 3.194116 | AGCAAAATGAATGAATCCGCACT | 59.806 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
5382 | 6246 | 3.514645 | AGCAAAATGAATGAATCCGCAC | 58.485 | 40.909 | 0.00 | 0.00 | 0.00 | 5.34 |
5383 | 6247 | 3.429272 | GGAGCAAAATGAATGAATCCGCA | 60.429 | 43.478 | 0.00 | 0.00 | 0.00 | 5.69 |
5384 | 6248 | 3.118542 | GGAGCAAAATGAATGAATCCGC | 58.881 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
5385 | 6249 | 3.181497 | ACGGAGCAAAATGAATGAATCCG | 60.181 | 43.478 | 14.85 | 14.85 | 45.97 | 4.18 |
5386 | 6250 | 4.376340 | ACGGAGCAAAATGAATGAATCC | 57.624 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
5387 | 6251 | 6.498304 | ACATACGGAGCAAAATGAATGAATC | 58.502 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
5388 | 6252 | 6.455360 | ACATACGGAGCAAAATGAATGAAT | 57.545 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5389 | 6253 | 5.895636 | ACATACGGAGCAAAATGAATGAA | 57.104 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
5390 | 6254 | 5.007626 | GCTACATACGGAGCAAAATGAATGA | 59.992 | 40.000 | 0.00 | 0.00 | 38.62 | 2.57 |
5391 | 6255 | 5.207768 | GCTACATACGGAGCAAAATGAATG | 58.792 | 41.667 | 0.00 | 0.00 | 38.62 | 2.67 |
5392 | 6256 | 4.275936 | GGCTACATACGGAGCAAAATGAAT | 59.724 | 41.667 | 0.00 | 0.00 | 40.64 | 2.57 |
5393 | 6257 | 3.625764 | GGCTACATACGGAGCAAAATGAA | 59.374 | 43.478 | 0.00 | 0.00 | 40.64 | 2.57 |
5394 | 6258 | 3.202906 | GGCTACATACGGAGCAAAATGA | 58.797 | 45.455 | 0.00 | 0.00 | 40.64 | 2.57 |
5395 | 6259 | 2.290641 | GGGCTACATACGGAGCAAAATG | 59.709 | 50.000 | 0.00 | 0.00 | 40.64 | 2.32 |
5396 | 6260 | 2.092646 | TGGGCTACATACGGAGCAAAAT | 60.093 | 45.455 | 0.00 | 0.00 | 40.64 | 1.82 |
5397 | 6261 | 1.279558 | TGGGCTACATACGGAGCAAAA | 59.720 | 47.619 | 0.00 | 0.00 | 40.64 | 2.44 |
5398 | 6262 | 0.906066 | TGGGCTACATACGGAGCAAA | 59.094 | 50.000 | 0.00 | 0.00 | 40.64 | 3.68 |
5399 | 6263 | 1.070134 | GATGGGCTACATACGGAGCAA | 59.930 | 52.381 | 0.00 | 0.00 | 40.72 | 3.91 |
5400 | 6264 | 0.679505 | GATGGGCTACATACGGAGCA | 59.320 | 55.000 | 0.00 | 0.00 | 40.72 | 4.26 |
5401 | 6265 | 0.969894 | AGATGGGCTACATACGGAGC | 59.030 | 55.000 | 0.00 | 0.00 | 40.72 | 4.70 |
5402 | 6266 | 3.191581 | CACTAGATGGGCTACATACGGAG | 59.808 | 52.174 | 0.00 | 0.00 | 40.72 | 4.63 |
5403 | 6267 | 3.154710 | CACTAGATGGGCTACATACGGA | 58.845 | 50.000 | 0.00 | 0.00 | 40.72 | 4.69 |
5404 | 6268 | 2.231478 | CCACTAGATGGGCTACATACGG | 59.769 | 54.545 | 0.00 | 0.00 | 45.95 | 4.02 |
5405 | 6269 | 3.577649 | CCACTAGATGGGCTACATACG | 57.422 | 52.381 | 0.00 | 0.00 | 45.95 | 3.06 |
5414 | 6278 | 7.281100 | GTCTTTGTAGAAATTCCACTAGATGGG | 59.719 | 40.741 | 0.00 | 0.00 | 39.65 | 4.00 |
5415 | 6279 | 8.043710 | AGTCTTTGTAGAAATTCCACTAGATGG | 58.956 | 37.037 | 0.00 | 0.43 | 40.20 | 3.51 |
5416 | 6280 | 9.442047 | AAGTCTTTGTAGAAATTCCACTAGATG | 57.558 | 33.333 | 0.00 | 0.00 | 30.65 | 2.90 |
5418 | 6282 | 9.924650 | GTAAGTCTTTGTAGAAATTCCACTAGA | 57.075 | 33.333 | 0.00 | 0.00 | 30.65 | 2.43 |
5419 | 6283 | 9.706691 | TGTAAGTCTTTGTAGAAATTCCACTAG | 57.293 | 33.333 | 0.00 | 0.00 | 30.65 | 2.57 |
5421 | 6285 | 9.574516 | AATGTAAGTCTTTGTAGAAATTCCACT | 57.425 | 29.630 | 0.00 | 0.00 | 30.65 | 4.00 |
5429 | 6293 | 9.199982 | CGTTCCTAAATGTAAGTCTTTGTAGAA | 57.800 | 33.333 | 0.00 | 0.00 | 30.65 | 2.10 |
5430 | 6294 | 7.816031 | CCGTTCCTAAATGTAAGTCTTTGTAGA | 59.184 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
5431 | 6295 | 7.816031 | TCCGTTCCTAAATGTAAGTCTTTGTAG | 59.184 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
5432 | 6296 | 7.669427 | TCCGTTCCTAAATGTAAGTCTTTGTA | 58.331 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
5433 | 6297 | 6.527423 | TCCGTTCCTAAATGTAAGTCTTTGT | 58.473 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5434 | 6298 | 6.092259 | CCTCCGTTCCTAAATGTAAGTCTTTG | 59.908 | 42.308 | 0.00 | 0.00 | 0.00 | 2.77 |
5435 | 6299 | 6.171213 | CCTCCGTTCCTAAATGTAAGTCTTT | 58.829 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
5436 | 6300 | 5.338137 | CCCTCCGTTCCTAAATGTAAGTCTT | 60.338 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5437 | 6301 | 4.161754 | CCCTCCGTTCCTAAATGTAAGTCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
5438 | 6302 | 4.161001 | TCCCTCCGTTCCTAAATGTAAGTC | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
5439 | 6303 | 4.098894 | TCCCTCCGTTCCTAAATGTAAGT | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
5440 | 6304 | 4.161754 | ACTCCCTCCGTTCCTAAATGTAAG | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
5441 | 6305 | 4.098894 | ACTCCCTCCGTTCCTAAATGTAA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
5442 | 6306 | 3.716431 | ACTCCCTCCGTTCCTAAATGTA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
5443 | 6307 | 2.547990 | ACTCCCTCCGTTCCTAAATGT | 58.452 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
5444 | 6308 | 4.957684 | ATACTCCCTCCGTTCCTAAATG | 57.042 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
5445 | 6309 | 4.102681 | CCAATACTCCCTCCGTTCCTAAAT | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 1.40 |
5446 | 6310 | 3.453353 | CCAATACTCCCTCCGTTCCTAAA | 59.547 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
5447 | 6311 | 3.036091 | CCAATACTCCCTCCGTTCCTAA | 58.964 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
5448 | 6312 | 2.023695 | ACCAATACTCCCTCCGTTCCTA | 60.024 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
5449 | 6313 | 1.273666 | ACCAATACTCCCTCCGTTCCT | 60.274 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
5450 | 6314 | 1.201424 | ACCAATACTCCCTCCGTTCC | 58.799 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
5451 | 6315 | 3.450096 | ACTAACCAATACTCCCTCCGTTC | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
5452 | 6316 | 3.447950 | ACTAACCAATACTCCCTCCGTT | 58.552 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
5453 | 6317 | 3.029570 | GACTAACCAATACTCCCTCCGT | 58.970 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
5454 | 6318 | 3.068307 | CAGACTAACCAATACTCCCTCCG | 59.932 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
5455 | 6319 | 3.181464 | GCAGACTAACCAATACTCCCTCC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
5456 | 6320 | 3.181464 | GGCAGACTAACCAATACTCCCTC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
5457 | 6321 | 2.772515 | GGCAGACTAACCAATACTCCCT | 59.227 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5458 | 6322 | 2.772515 | AGGCAGACTAACCAATACTCCC | 59.227 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5459 | 6323 | 3.432326 | CCAGGCAGACTAACCAATACTCC | 60.432 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
5460 | 6324 | 3.197983 | ACCAGGCAGACTAACCAATACTC | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
5461 | 6325 | 3.182152 | ACCAGGCAGACTAACCAATACT | 58.818 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
5462 | 6326 | 3.629142 | ACCAGGCAGACTAACCAATAC | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
5463 | 6327 | 5.968676 | ATTACCAGGCAGACTAACCAATA | 57.031 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
5464 | 6328 | 4.862641 | ATTACCAGGCAGACTAACCAAT | 57.137 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
5465 | 6329 | 5.968676 | ATATTACCAGGCAGACTAACCAA | 57.031 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
5466 | 6330 | 8.730093 | TTATATATTACCAGGCAGACTAACCA | 57.270 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
5488 | 6352 | 6.453926 | TGCACATCAGCACATGTTATTTAT | 57.546 | 33.333 | 0.00 | 0.00 | 40.11 | 1.40 |
5501 | 6365 | 1.226773 | GCCCGAAATGCACATCAGC | 60.227 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
5503 | 6367 | 1.184431 | ATTGCCCGAAATGCACATCA | 58.816 | 45.000 | 0.00 | 0.00 | 38.72 | 3.07 |
5504 | 6368 | 2.298411 | AATTGCCCGAAATGCACATC | 57.702 | 45.000 | 0.00 | 0.00 | 38.72 | 3.06 |
5505 | 6369 | 2.766345 | AAATTGCCCGAAATGCACAT | 57.234 | 40.000 | 0.00 | 0.00 | 38.72 | 3.21 |
5529 | 6393 | 1.826921 | TTGCCCGTACCCGCAAAAA | 60.827 | 52.632 | 10.88 | 0.00 | 41.80 | 1.94 |
5530 | 6394 | 2.203308 | TTGCCCGTACCCGCAAAA | 60.203 | 55.556 | 10.88 | 0.00 | 41.80 | 2.44 |
5533 | 6397 | 0.816018 | CATAATTGCCCGTACCCGCA | 60.816 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
5534 | 6398 | 1.512156 | CCATAATTGCCCGTACCCGC | 61.512 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
5535 | 6399 | 0.179040 | ACCATAATTGCCCGTACCCG | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
5536 | 6400 | 2.934886 | TACCATAATTGCCCGTACCC | 57.065 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
5537 | 6401 | 2.486592 | GCATACCATAATTGCCCGTACC | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
5538 | 6402 | 3.408634 | AGCATACCATAATTGCCCGTAC | 58.591 | 45.455 | 0.00 | 0.00 | 37.07 | 3.67 |
5539 | 6403 | 3.780804 | AGCATACCATAATTGCCCGTA | 57.219 | 42.857 | 0.00 | 0.00 | 37.07 | 4.02 |
5540 | 6404 | 2.622942 | CAAGCATACCATAATTGCCCGT | 59.377 | 45.455 | 0.00 | 0.00 | 37.07 | 5.28 |
5548 | 6412 | 9.104965 | GTCAATAACACTACAAGCATACCATAA | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
5598 | 6462 | 2.225727 | GGTTTAACAGGAGCGACAAAGG | 59.774 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
5610 | 6474 | 4.370917 | ACATGCTTGCAAAGGTTTAACAG | 58.629 | 39.130 | 0.00 | 0.00 | 46.35 | 3.16 |
5644 | 6508 | 7.382898 | GGGCAAACCTATTTTTAACAGAATGA | 58.617 | 34.615 | 0.00 | 0.00 | 36.21 | 2.57 |
5679 | 6543 | 1.071471 | GGATGCCCCGTATGGACAG | 59.929 | 63.158 | 1.27 | 0.00 | 37.49 | 3.51 |
5691 | 6555 | 3.319122 | GGTCTTTACAATGGATGGATGCC | 59.681 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
5721 | 6585 | 2.546899 | TGGCCTGTGTAACTCACCTAT | 58.453 | 47.619 | 3.32 | 0.00 | 45.61 | 2.57 |
5766 | 6658 | 1.624813 | ACTCGGTCCGTCCCAAAATAA | 59.375 | 47.619 | 11.88 | 0.00 | 0.00 | 1.40 |
5767 | 6659 | 1.269012 | ACTCGGTCCGTCCCAAAATA | 58.731 | 50.000 | 11.88 | 0.00 | 0.00 | 1.40 |
5768 | 6660 | 1.269012 | TACTCGGTCCGTCCCAAAAT | 58.731 | 50.000 | 11.88 | 0.00 | 0.00 | 1.82 |
5769 | 6661 | 1.269012 | ATACTCGGTCCGTCCCAAAA | 58.731 | 50.000 | 11.88 | 0.00 | 0.00 | 2.44 |
5781 | 6673 | 3.793559 | CAGGGGTAGAACAAATACTCGG | 58.206 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5783 | 6675 | 4.443621 | GAGCAGGGGTAGAACAAATACTC | 58.556 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
5823 | 6715 | 9.671521 | CGAAGAAACTAGTTTTACAACATATCG | 57.328 | 33.333 | 21.40 | 14.19 | 35.05 | 2.92 |
5828 | 6720 | 7.546667 | ACTGTCGAAGAAACTAGTTTTACAACA | 59.453 | 33.333 | 21.40 | 18.41 | 39.69 | 3.33 |
5829 | 6721 | 7.844653 | CACTGTCGAAGAAACTAGTTTTACAAC | 59.155 | 37.037 | 21.40 | 15.49 | 39.69 | 3.32 |
5830 | 6722 | 7.760794 | TCACTGTCGAAGAAACTAGTTTTACAA | 59.239 | 33.333 | 21.40 | 5.06 | 39.69 | 2.41 |
5839 | 6731 | 5.001237 | TGTTGTCACTGTCGAAGAAACTA | 57.999 | 39.130 | 0.00 | 0.00 | 39.69 | 2.24 |
5841 | 6733 | 4.593597 | TTGTTGTCACTGTCGAAGAAAC | 57.406 | 40.909 | 0.00 | 0.00 | 39.69 | 2.78 |
5849 | 6741 | 4.271291 | GGAGAGTTCTTTGTTGTCACTGTC | 59.729 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
5867 | 6759 | 2.360165 | AGCTTTTTGCACAAGTGGAGAG | 59.640 | 45.455 | 2.00 | 0.85 | 45.94 | 3.20 |
5874 | 6766 | 3.005050 | TGGATCAGAGCTTTTTGCACAAG | 59.995 | 43.478 | 0.00 | 0.00 | 45.94 | 3.16 |
5889 | 6781 | 3.574749 | TCTGAGGAGGATCTTGGATCAG | 58.425 | 50.000 | 9.33 | 1.34 | 35.21 | 2.90 |
5890 | 6782 | 3.695357 | TCTGAGGAGGATCTTGGATCA | 57.305 | 47.619 | 9.33 | 0.00 | 33.73 | 2.92 |
5891 | 6783 | 5.307716 | AGAATTCTGAGGAGGATCTTGGATC | 59.692 | 44.000 | 7.30 | 0.00 | 33.73 | 3.36 |
5897 | 6789 | 4.813809 | TGCTAGAATTCTGAGGAGGATCT | 58.186 | 43.478 | 18.47 | 0.00 | 33.73 | 2.75 |
5908 | 6800 | 6.624423 | GCAATCACATGTGTTGCTAGAATTCT | 60.624 | 38.462 | 34.21 | 13.56 | 40.73 | 2.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.