Multiple sequence alignment - TraesCS1A01G063600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G063600 chr1A 100.000 5471 0 0 483 5953 44407600 44413070 0.000000e+00 10104.0
1 TraesCS1A01G063600 chr1A 100.000 292 0 0 1 292 44407118 44407409 1.890000e-149 540.0
2 TraesCS1A01G063600 chr1A 87.006 354 32 9 4906 5256 45296487 45296829 2.600000e-103 387.0
3 TraesCS1A01G063600 chr1B 92.672 4626 220 51 483 5063 63960221 63964772 0.000000e+00 6554.0
4 TraesCS1A01G063600 chr1B 90.326 920 63 9 4027 4924 63964868 63965783 0.000000e+00 1182.0
5 TraesCS1A01G063600 chr1B 86.889 389 39 10 4905 5286 65274244 65274627 5.510000e-115 425.0
6 TraesCS1A01G063600 chr1B 86.923 390 38 11 4905 5287 65279086 65279469 5.510000e-115 425.0
7 TraesCS1A01G063600 chr1B 86.118 389 42 8 4905 5286 65277266 65277649 5.550000e-110 409.0
8 TraesCS1A01G063600 chr1B 92.910 268 15 2 1 265 63959522 63959788 2.600000e-103 387.0
9 TraesCS1A01G063600 chr1B 82.000 150 15 3 98 235 22738441 22738292 3.770000e-22 117.0
10 TraesCS1A01G063600 chr1B 94.118 68 4 0 5048 5115 63964790 63964857 2.930000e-18 104.0
11 TraesCS1A01G063600 chr1D 93.636 2027 110 7 3053 5063 44645362 44647385 0.000000e+00 3011.0
12 TraesCS1A01G063600 chr1D 87.653 899 68 22 484 1371 44642559 44643425 0.000000e+00 1005.0
13 TraesCS1A01G063600 chr1D 95.547 539 21 2 2520 3055 44644701 44645239 0.000000e+00 859.0
14 TraesCS1A01G063600 chr1D 92.293 519 32 7 1952 2469 44643929 44644440 0.000000e+00 730.0
15 TraesCS1A01G063600 chr1D 87.661 389 39 7 4905 5287 45276657 45277042 1.520000e-120 444.0
16 TraesCS1A01G063600 chr1D 85.412 425 29 15 5549 5945 44647662 44648081 1.540000e-110 411.0
17 TraesCS1A01G063600 chr1D 91.450 269 16 3 1 265 44641996 44642261 4.390000e-96 363.0
18 TraesCS1A01G063600 chr1D 82.391 460 35 24 1409 1847 44643426 44643860 5.670000e-95 359.0
19 TraesCS1A01G063600 chr1D 85.892 241 29 4 5048 5287 44647403 44647639 9.900000e-63 252.0
20 TraesCS1A01G063600 chr1D 100.000 39 0 0 1854 1892 44643886 44643924 8.280000e-09 73.1
21 TraesCS1A01G063600 chr3A 98.773 163 2 0 5303 5465 127271507 127271345 2.100000e-74 291.0
22 TraesCS1A01G063600 chr3A 96.078 51 2 0 580 630 108218435 108218485 3.820000e-12 84.2
23 TraesCS1A01G063600 chr4A 96.970 165 5 0 5303 5467 667379647 667379811 1.630000e-70 278.0
24 TraesCS1A01G063600 chr2B 96.933 163 5 0 5303 5465 560443246 560443408 2.110000e-69 274.0
25 TraesCS1A01G063600 chr2B 94.545 165 9 0 5303 5467 80195933 80195769 7.660000e-64 255.0
26 TraesCS1A01G063600 chr6B 94.578 166 9 0 5301 5466 233173332 233173497 2.130000e-64 257.0
27 TraesCS1A01G063600 chr6B 81.333 150 16 3 98 235 151488414 151488265 1.750000e-20 111.0
28 TraesCS1A01G063600 chr4B 95.092 163 8 0 5303 5465 461850250 461850088 2.130000e-64 257.0
29 TraesCS1A01G063600 chr2A 94.083 169 9 1 5299 5467 753421731 753421564 7.660000e-64 255.0
30 TraesCS1A01G063600 chr2A 86.486 148 17 2 483 630 728718572 728718428 6.180000e-35 159.0
31 TraesCS1A01G063600 chr2D 93.064 173 10 2 5303 5474 240791023 240791194 9.900000e-63 252.0
32 TraesCS1A01G063600 chr2D 95.833 48 2 0 580 627 532378427 532378474 1.780000e-10 78.7
33 TraesCS1A01G063600 chr2D 94.118 51 3 0 580 630 592919693 592919643 1.780000e-10 78.7
34 TraesCS1A01G063600 chr7A 92.045 176 14 0 5303 5478 699482888 699482713 1.280000e-61 248.0
35 TraesCS1A01G063600 chr7B 82.667 150 14 3 98 235 594730511 594730362 8.100000e-24 122.0
36 TraesCS1A01G063600 chr6A 79.781 183 19 6 98 263 65262683 65262502 3.770000e-22 117.0
37 TraesCS1A01G063600 chr7D 95.833 48 2 0 580 627 485653067 485653114 1.780000e-10 78.7
38 TraesCS1A01G063600 chr5D 94.118 51 3 0 580 630 545794097 545794047 1.780000e-10 78.7
39 TraesCS1A01G063600 chr3D 94.118 51 3 0 580 630 493419597 493419547 1.780000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G063600 chr1A 44407118 44413070 5952 False 5322.000000 10104 100.000000 1 5953 2 chr1A.!!$F2 5952
1 TraesCS1A01G063600 chr1B 63959522 63965783 6261 False 2056.750000 6554 92.506500 1 5115 4 chr1B.!!$F1 5114
2 TraesCS1A01G063600 chr1B 65274244 65279469 5225 False 419.666667 425 86.643333 4905 5287 3 chr1B.!!$F2 382
3 TraesCS1A01G063600 chr1D 44641996 44648081 6085 False 784.788889 3011 90.474889 1 5945 9 chr1D.!!$F2 5944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 680 0.107897 ACACGCAGACAACCAGTTCA 60.108 50.0 0.00 0.0 0.00 3.18 F
555 947 0.321564 GGAGCAGGCACACACATACA 60.322 55.0 0.00 0.0 0.00 2.29 F
841 1236 0.462047 CGGTGGCTACTGGATTGGAC 60.462 60.0 0.05 0.0 0.00 4.02 F
1023 1420 0.540365 AAGCCACAATCACCCACCAG 60.540 55.0 0.00 0.0 0.00 4.00 F
1816 2257 0.598065 GCAAAATGTGGCTTCTCGGT 59.402 50.0 0.00 0.0 0.00 4.69 F
2818 3503 0.169009 GAGGACGCATTTGCCTTGAC 59.831 55.0 0.00 0.0 37.91 3.18 F
4314 5124 0.250858 TGTCAGGTCCAGTTGCCATG 60.251 55.0 0.00 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1156 1553 0.107897 TTCCCGTTCGATGATGTGGG 60.108 55.000 0.00 0.0 38.02 4.61 R
1728 2169 0.397564 AACCGACAATACAACCGGGT 59.602 50.000 6.32 0.0 45.63 5.28 R
1831 2272 1.701704 AACGAGTAAACCGGCGTTAG 58.298 50.000 12.62 0.0 44.07 2.34 R
2283 2753 2.298163 AGCCTGCACAAAAGGAAGATTG 59.702 45.455 0.00 0.0 36.91 2.67 R
3743 4553 0.469917 ACCTTCCACACTGTCACTGG 59.530 55.000 0.00 0.0 0.00 4.00 R
4357 5167 1.019278 GGACGATCGCTTTGGCTGAA 61.019 55.000 16.60 0.0 36.09 3.02 R
5535 6399 0.179040 ACCATAATTGCCCGTACCCG 60.179 55.000 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 3.259374 TGGTTTGTGCCAAGTTTTGAAGA 59.741 39.130 0.00 0.00 35.25 2.87
91 96 4.494484 GTTTGTGCCAAGTTTTGAAGAGT 58.506 39.130 0.00 0.00 0.00 3.24
161 166 7.520131 GCCTAAAAGTACAAGACTGAAAGAACC 60.520 40.741 0.00 0.00 38.87 3.62
175 180 7.681862 ACTGAAAGAACCCAAAAGGTACATCG 61.682 42.308 0.00 0.00 44.08 3.84
185 190 6.645415 CCCAAAAGGTACATCGTCTATGATAC 59.355 42.308 0.00 0.00 39.07 2.24
211 216 7.593273 CGTTTAGCATTTGTATTTGAACTGGAA 59.407 33.333 0.00 0.00 0.00 3.53
222 227 7.560991 TGTATTTGAACTGGAATAGGATTGCAT 59.439 33.333 0.00 0.00 0.00 3.96
276 668 2.354074 AAAAGGCAGGCAACACGCAG 62.354 55.000 0.00 0.00 45.17 5.18
281 673 1.009675 CAGGCAACACGCAGACAAC 60.010 57.895 0.00 0.00 45.17 3.32
282 674 2.186826 AGGCAACACGCAGACAACC 61.187 57.895 0.00 0.00 45.17 3.77
283 675 2.477176 GGCAACACGCAGACAACCA 61.477 57.895 0.00 0.00 45.17 3.67
284 676 1.009675 GCAACACGCAGACAACCAG 60.010 57.895 0.00 0.00 41.79 4.00
286 678 0.732571 CAACACGCAGACAACCAGTT 59.267 50.000 0.00 0.00 0.00 3.16
287 679 1.014352 AACACGCAGACAACCAGTTC 58.986 50.000 0.00 0.00 0.00 3.01
288 680 0.107897 ACACGCAGACAACCAGTTCA 60.108 50.000 0.00 0.00 0.00 3.18
289 681 1.229428 CACGCAGACAACCAGTTCAT 58.771 50.000 0.00 0.00 0.00 2.57
290 682 1.195448 CACGCAGACAACCAGTTCATC 59.805 52.381 0.00 0.00 0.00 2.92
291 683 0.798776 CGCAGACAACCAGTTCATCC 59.201 55.000 0.00 0.00 0.00 3.51
555 947 0.321564 GGAGCAGGCACACACATACA 60.322 55.000 0.00 0.00 0.00 2.29
576 968 0.522626 TCGCCTACGACGACATGAAA 59.477 50.000 0.00 0.00 45.12 2.69
587 979 1.743996 GACATGAAACCCTCAGGCTC 58.256 55.000 0.00 0.00 39.53 4.70
631 1023 1.067212 CCTTATTAGCTCAGGCGTCGT 59.933 52.381 0.00 0.00 44.37 4.34
652 1044 1.602237 GGGGAGCTGAATCCGACAA 59.398 57.895 0.00 0.00 40.56 3.18
663 1055 0.678048 ATCCGACAAGGGCAAGAAGC 60.678 55.000 0.00 0.00 41.52 3.86
680 1072 1.490574 AGCAAGCTAGTACCTGGGAG 58.509 55.000 0.00 0.00 0.00 4.30
714 1106 1.700042 ATGGGATTGGAGGAGGCGAC 61.700 60.000 0.00 0.00 0.00 5.19
721 1113 2.637383 GGAGGAGGCGACGTGAACT 61.637 63.158 0.00 0.00 0.00 3.01
724 1116 2.254651 GAGGCGACGTGAACTCGT 59.745 61.111 0.00 1.71 46.88 4.18
733 1125 2.522436 TGAACTCGTGACGGGGGT 60.522 61.111 10.58 0.00 0.00 4.95
738 1130 4.988716 TCGTGACGGGGGTGAGCT 62.989 66.667 4.70 0.00 0.00 4.09
841 1236 0.462047 CGGTGGCTACTGGATTGGAC 60.462 60.000 0.05 0.00 0.00 4.02
845 1240 2.027192 GTGGCTACTGGATTGGACTGAA 60.027 50.000 0.00 0.00 0.00 3.02
848 1243 3.135530 GGCTACTGGATTGGACTGAAGAT 59.864 47.826 0.00 0.00 0.00 2.40
850 1245 3.641434 ACTGGATTGGACTGAAGATGG 57.359 47.619 0.00 0.00 0.00 3.51
861 1256 7.257790 TGGACTGAAGATGGAGAAATAGAAA 57.742 36.000 0.00 0.00 0.00 2.52
863 1258 7.607991 TGGACTGAAGATGGAGAAATAGAAAAC 59.392 37.037 0.00 0.00 0.00 2.43
870 1265 4.312443 TGGAGAAATAGAAAACGCGAAGT 58.688 39.130 15.93 0.00 0.00 3.01
887 1282 2.879103 AGTTGGACCGTTGGATTGAT 57.121 45.000 0.00 0.00 0.00 2.57
924 1319 1.961180 GCAGTGCTGGGATCCGTAGT 61.961 60.000 8.18 0.00 0.00 2.73
942 1339 1.349688 AGTACACGCAAATGAGGGGAA 59.650 47.619 0.00 0.00 0.00 3.97
948 1345 1.470285 CGCAAATGAGGGGAATGCTTG 60.470 52.381 0.00 0.00 34.93 4.01
991 1388 0.825425 TGGTGAATTTGCTTCCGCCA 60.825 50.000 0.00 0.00 36.30 5.69
1022 1419 0.827089 CAAGCCACAATCACCCACCA 60.827 55.000 0.00 0.00 0.00 4.17
1023 1420 0.540365 AAGCCACAATCACCCACCAG 60.540 55.000 0.00 0.00 0.00 4.00
1024 1421 1.978617 GCCACAATCACCCACCAGG 60.979 63.158 0.00 0.00 43.78 4.45
1086 1483 1.659954 GCGCTGCTCCAGATCTACG 60.660 63.158 0.00 0.00 32.44 3.51
1096 1493 2.202878 GATCTACGGCCAAGCGCA 60.203 61.111 11.47 0.00 40.31 6.09
1111 1508 2.941583 GCACCCCTTCCCTTCCCT 60.942 66.667 0.00 0.00 0.00 4.20
1112 1509 2.548547 GCACCCCTTCCCTTCCCTT 61.549 63.158 0.00 0.00 0.00 3.95
1113 1510 1.691823 CACCCCTTCCCTTCCCTTC 59.308 63.158 0.00 0.00 0.00 3.46
1114 1511 1.544151 ACCCCTTCCCTTCCCTTCC 60.544 63.158 0.00 0.00 0.00 3.46
1115 1512 2.317378 CCCCTTCCCTTCCCTTCCC 61.317 68.421 0.00 0.00 0.00 3.97
1118 1515 1.146544 CCTTCCCTTCCCTTCCCCAA 61.147 60.000 0.00 0.00 0.00 4.12
1169 1566 2.189257 CGGCCCCACATCATCGAA 59.811 61.111 0.00 0.00 0.00 3.71
1241 1638 2.767445 CGACACATCTACGGCGGGA 61.767 63.158 13.24 9.73 0.00 5.14
1242 1639 1.065928 GACACATCTACGGCGGGAG 59.934 63.158 13.24 8.43 0.00 4.30
1244 1641 2.125326 CACATCTACGGCGGGAGGA 61.125 63.158 19.60 9.20 0.00 3.71
1245 1642 1.828660 ACATCTACGGCGGGAGGAG 60.829 63.158 19.60 11.20 0.00 3.69
1246 1643 2.913060 ATCTACGGCGGGAGGAGC 60.913 66.667 13.24 0.00 0.00 4.70
1247 1644 3.438615 ATCTACGGCGGGAGGAGCT 62.439 63.158 13.24 0.00 34.52 4.09
1249 1646 4.124943 TACGGCGGGAGGAGCTCT 62.125 66.667 14.64 0.00 34.52 4.09
1261 1660 4.737476 AGCTCTCCCTGCCCTGCT 62.737 66.667 0.00 0.00 0.00 4.24
1376 1791 8.866970 TGTTAATACATGACCATGATGCATAT 57.133 30.769 16.07 1.54 41.20 1.78
1392 1807 7.819644 TGATGCATATAATCATGTAACAAGCC 58.180 34.615 0.00 0.00 0.00 4.35
1399 1814 5.435686 AATCATGTAACAAGCCTCCTGTA 57.564 39.130 0.00 0.00 0.00 2.74
1407 1828 2.370189 ACAAGCCTCCTGTATATCTGGC 59.630 50.000 0.00 0.00 40.54 4.85
1484 1908 9.744468 GATAATGATATTGTTTAACACCCAACC 57.256 33.333 0.00 0.00 0.00 3.77
1485 1909 7.790782 AATGATATTGTTTAACACCCAACCT 57.209 32.000 0.00 0.00 0.00 3.50
1486 1910 8.887264 AATGATATTGTTTAACACCCAACCTA 57.113 30.769 0.00 0.00 0.00 3.08
1487 1911 9.487442 AATGATATTGTTTAACACCCAACCTAT 57.513 29.630 0.00 0.00 0.00 2.57
1488 1912 8.887264 TGATATTGTTTAACACCCAACCTATT 57.113 30.769 0.00 0.00 0.00 1.73
1489 1913 9.315363 TGATATTGTTTAACACCCAACCTATTT 57.685 29.630 0.00 0.00 0.00 1.40
1513 1937 6.849085 ATTTAGTGTTGTATCCATGGCAAA 57.151 33.333 6.96 0.00 0.00 3.68
1545 1974 4.253685 TGAAACAGCCTGTTACATAGCTC 58.746 43.478 11.10 3.45 40.14 4.09
1583 2012 5.192327 ACATAGCTGCTTATTTTGCATCC 57.808 39.130 7.79 0.00 39.86 3.51
1593 2022 6.127925 TGCTTATTTTGCATCCAACTCACTAG 60.128 38.462 0.00 0.00 35.31 2.57
1604 2033 6.328641 TCCAACTCACTAGTCTTACTGAAC 57.671 41.667 0.00 0.00 33.75 3.18
1627 2056 4.055360 TCGAGATTTGAAGAAAACGAGCA 58.945 39.130 0.00 0.00 0.00 4.26
1632 2061 6.606768 AGATTTGAAGAAAACGAGCATTCTC 58.393 36.000 0.00 0.00 34.90 2.87
1643 2072 2.677902 CGAGCATTCTCCAGTAGCCAAA 60.678 50.000 0.00 0.00 35.94 3.28
1644 2073 3.549794 GAGCATTCTCCAGTAGCCAAAT 58.450 45.455 0.00 0.00 33.19 2.32
1645 2074 3.950395 GAGCATTCTCCAGTAGCCAAATT 59.050 43.478 0.00 0.00 33.19 1.82
1652 2081 8.571336 CATTCTCCAGTAGCCAAATTATTAAGG 58.429 37.037 0.00 0.00 0.00 2.69
1761 2202 3.070748 TGTCGGTTGATGGTTGTATGTG 58.929 45.455 0.00 0.00 0.00 3.21
1766 2207 3.572255 GGTTGATGGTTGTATGTGTTGGT 59.428 43.478 0.00 0.00 0.00 3.67
1816 2257 0.598065 GCAAAATGTGGCTTCTCGGT 59.402 50.000 0.00 0.00 0.00 4.69
1896 2358 3.002102 GTTATAACGCCCGGTTGAAGAA 58.998 45.455 0.00 0.00 39.75 2.52
1941 2403 2.807247 ACCTTGGACTGGTGTTTGC 58.193 52.632 0.00 0.00 36.30 3.68
2154 2624 5.278512 GCTAACCTGGTTCTCTTGGAAAAAG 60.279 44.000 16.75 4.34 35.51 2.27
2161 2631 4.021981 GGTTCTCTTGGAAAAAGGGACATG 60.022 45.833 0.00 0.00 35.51 3.21
2169 2639 4.523943 TGGAAAAAGGGACATGTGAGATTG 59.476 41.667 1.15 0.00 0.00 2.67
2283 2753 8.796475 TCCAAAGATATGCTGATATTTAAAGGC 58.204 33.333 0.00 0.00 0.00 4.35
2349 2821 1.924320 GCTCAAGCTGCAAGGCTGAG 61.924 60.000 16.23 16.23 42.24 3.35
2386 2858 6.371271 AGAAAGAGATTAAACTTCTGCTCAGC 59.629 38.462 0.00 0.00 0.00 4.26
2499 2971 1.872952 CACCCATACACACACACACAG 59.127 52.381 0.00 0.00 0.00 3.66
2516 2988 0.883833 CAGTCATCCCAAACAGTGCC 59.116 55.000 0.00 0.00 0.00 5.01
2727 3412 0.179086 TGACAGTCACGCTTGCTGAA 60.179 50.000 17.20 6.30 33.55 3.02
2818 3503 0.169009 GAGGACGCATTTGCCTTGAC 59.831 55.000 0.00 0.00 37.91 3.18
3221 4031 9.199982 CAAGTTTTTGACATAAATGCTCAATCT 57.800 29.630 8.03 6.02 36.36 2.40
3228 4038 6.317140 TGACATAAATGCTCAATCTTGGACTC 59.683 38.462 0.00 0.00 0.00 3.36
3379 4189 2.470990 ACTGATAGGCACAGACCATGA 58.529 47.619 11.91 0.00 38.55 3.07
3437 4247 5.534654 TGGAAGTTCCTAACAAAGATTGTGG 59.465 40.000 22.41 0.00 39.79 4.17
3530 4340 2.355513 CCAGCACTCTTAAGCAGGATGT 60.356 50.000 0.00 0.00 39.51 3.06
3743 4553 1.202940 AGAGGCTCCAAACCAAAGGAC 60.203 52.381 11.71 0.00 0.00 3.85
3749 4559 1.566703 TCCAAACCAAAGGACCAGTGA 59.433 47.619 0.00 0.00 0.00 3.41
3766 4576 3.039011 AGTGACAGTGTGGAAGGTAAGT 58.961 45.455 0.00 0.00 0.00 2.24
4006 4816 7.925622 TGAATATATGGCTCCAGATCATCTTT 58.074 34.615 0.00 0.00 0.00 2.52
4012 4822 3.876320 GGCTCCAGATCATCTTTCTTCAC 59.124 47.826 0.00 0.00 0.00 3.18
4015 4825 4.511527 TCCAGATCATCTTTCTTCACTGC 58.488 43.478 0.00 0.00 0.00 4.40
4040 4850 7.602265 GCCAGGTTTTAATAATCTGCAGAAAAA 59.398 33.333 22.50 18.44 0.00 1.94
4095 4905 2.771089 TGTGCTGATCTGGTTCAAGAC 58.229 47.619 1.46 0.00 0.00 3.01
4107 4917 7.009179 TCTGGTTCAAGACAATTCTCATACT 57.991 36.000 0.00 0.00 0.00 2.12
4120 4930 7.826252 ACAATTCTCATACTGAGCATGTACTTT 59.174 33.333 0.00 0.00 43.95 2.66
4252 5062 5.103940 ACAAGTGACAAGGGATATAAGCCAT 60.104 40.000 0.00 0.00 0.00 4.40
4314 5124 0.250858 TGTCAGGTCCAGTTGCCATG 60.251 55.000 0.00 0.00 0.00 3.66
4357 5167 5.812127 GGCTTTGTTGATTCACAGAAAAGTT 59.188 36.000 0.00 0.00 36.26 2.66
4369 5179 2.791004 CAGAAAAGTTTCAGCCAAAGCG 59.209 45.455 6.56 0.00 39.61 4.68
4608 5418 5.419542 TCAAGGTTATCGTTGATGAAGAGG 58.580 41.667 5.10 0.00 41.48 3.69
4610 5420 3.197766 AGGTTATCGTTGATGAAGAGGCA 59.802 43.478 0.00 0.00 0.00 4.75
4666 5489 4.143115 CGAAAACGTTGCTGTCATGTAGAT 60.143 41.667 0.00 0.00 0.00 1.98
4744 5567 5.511377 CGCACGTTTTGATGTTTATATTGCT 59.489 36.000 0.00 0.00 0.00 3.91
4962 5789 5.934043 ACAATTTGGAAAAAGGATAGCTTGC 59.066 36.000 0.00 0.00 0.00 4.01
4966 5793 5.835113 TGGAAAAAGGATAGCTTGCATAC 57.165 39.130 0.00 0.00 0.00 2.39
4985 5812 7.873739 GCATACTTGCTTGTTCAGTAAAATT 57.126 32.000 0.00 0.00 45.77 1.82
4991 5818 9.683069 ACTTGCTTGTTCAGTAAAATTGATAAG 57.317 29.630 0.00 0.00 0.00 1.73
5035 5862 6.997222 GCATTCTTGCCATCTAATTTTTCAC 58.003 36.000 0.00 0.00 43.38 3.18
5036 5863 6.591062 GCATTCTTGCCATCTAATTTTTCACA 59.409 34.615 0.00 0.00 43.38 3.58
5038 5865 8.814235 CATTCTTGCCATCTAATTTTTCACATC 58.186 33.333 0.00 0.00 0.00 3.06
5040 5867 8.806429 TCTTGCCATCTAATTTTTCACATCTA 57.194 30.769 0.00 0.00 0.00 1.98
5126 5983 0.988832 TGTTCCCTCGTAAGCCCATT 59.011 50.000 0.00 0.00 37.18 3.16
5132 5989 4.457466 TCCCTCGTAAGCCCATTTATTTC 58.543 43.478 0.00 0.00 37.18 2.17
5133 5990 3.568430 CCCTCGTAAGCCCATTTATTTCC 59.432 47.826 0.00 0.00 37.18 3.13
5136 5993 4.204012 TCGTAAGCCCATTTATTTCCTGG 58.796 43.478 0.00 0.00 37.18 4.45
5137 5994 3.243401 CGTAAGCCCATTTATTTCCTGGC 60.243 47.826 0.00 0.00 39.17 4.85
5141 5998 2.742856 GCCCATTTATTTCCTGGCAAGC 60.743 50.000 0.00 0.00 38.73 4.01
5172 6032 9.086336 CATTCTGTATTTGTTTCAGTTGTTTGT 57.914 29.630 0.00 0.00 0.00 2.83
5228 6092 6.915300 TGACAATTTTGTACTGATTGTTTCCG 59.085 34.615 17.14 0.00 42.31 4.30
5234 6098 8.934507 TTTTGTACTGATTGTTTCCGAAAATT 57.065 26.923 0.00 0.00 0.00 1.82
5243 6107 5.759506 TGTTTCCGAAAATTACAAGCTGA 57.240 34.783 0.00 0.00 0.00 4.26
5263 6127 5.562890 GCTGAAAGGTCGCAAAATTTAGTCT 60.563 40.000 0.00 0.00 0.00 3.24
5272 6136 5.815740 TCGCAAAATTTAGTCTCTATGGGAC 59.184 40.000 0.00 0.00 0.00 4.46
5276 6140 6.540438 AAATTTAGTCTCTATGGGACGTCA 57.460 37.500 18.91 0.00 38.58 4.35
5282 6146 8.563123 TTAGTCTCTATGGGACGTCATATAAG 57.437 38.462 18.91 13.29 38.58 1.73
5287 6151 7.554476 TCTCTATGGGACGTCATATAAGATGAG 59.446 40.741 18.91 15.22 0.00 2.90
5288 6152 5.667539 ATGGGACGTCATATAAGATGAGG 57.332 43.478 18.91 5.42 39.16 3.86
5289 6153 3.258372 TGGGACGTCATATAAGATGAGGC 59.742 47.826 18.91 0.00 37.41 4.70
5291 6155 2.917971 GACGTCATATAAGATGAGGCGC 59.082 50.000 11.55 0.00 37.41 6.53
5292 6156 2.263077 CGTCATATAAGATGAGGCGCC 58.737 52.381 21.89 21.89 0.00 6.53
5293 6157 2.622436 GTCATATAAGATGAGGCGCCC 58.378 52.381 26.15 15.80 0.00 6.13
5296 6160 0.976641 TATAAGATGAGGCGCCCCTG 59.023 55.000 26.15 0.00 43.12 4.45
5298 6162 2.889521 TAAGATGAGGCGCCCCTGGA 62.890 60.000 26.15 2.33 43.12 3.86
5300 6164 3.338250 ATGAGGCGCCCCTGGAAA 61.338 61.111 26.15 0.00 43.12 3.13
5301 6165 3.350031 ATGAGGCGCCCCTGGAAAG 62.350 63.158 26.15 0.00 43.12 2.62
5302 6166 4.035102 GAGGCGCCCCTGGAAAGT 62.035 66.667 26.15 0.00 43.12 2.66
5303 6167 2.609610 AGGCGCCCCTGGAAAGTA 60.610 61.111 26.15 0.00 40.94 2.24
5304 6168 2.437895 GGCGCCCCTGGAAAGTAC 60.438 66.667 18.11 0.00 0.00 2.73
5305 6169 2.669240 GCGCCCCTGGAAAGTACT 59.331 61.111 0.00 0.00 0.00 2.73
5306 6170 1.449778 GCGCCCCTGGAAAGTACTC 60.450 63.158 0.00 0.00 0.00 2.59
5307 6171 1.221021 CGCCCCTGGAAAGTACTCC 59.779 63.158 0.00 0.00 35.88 3.85
5308 6172 1.608154 GCCCCTGGAAAGTACTCCC 59.392 63.158 0.00 1.23 34.22 4.30
5310 6174 1.205055 CCCCTGGAAAGTACTCCCTC 58.795 60.000 13.46 4.06 34.22 4.30
5311 6175 1.205055 CCCTGGAAAGTACTCCCTCC 58.795 60.000 13.46 11.91 34.22 4.30
5312 6176 0.824759 CCTGGAAAGTACTCCCTCCG 59.175 60.000 13.46 8.62 34.22 4.63
5313 6177 1.558233 CTGGAAAGTACTCCCTCCGT 58.442 55.000 13.46 0.00 34.22 4.69
5314 6178 1.900486 CTGGAAAGTACTCCCTCCGTT 59.100 52.381 13.46 0.00 34.22 4.44
5315 6179 1.897802 TGGAAAGTACTCCCTCCGTTC 59.102 52.381 13.46 4.69 34.22 3.95
5316 6180 1.206610 GGAAAGTACTCCCTCCGTTCC 59.793 57.143 0.00 0.00 0.00 3.62
5317 6181 2.177734 GAAAGTACTCCCTCCGTTCCT 58.822 52.381 0.00 0.00 0.00 3.36
5318 6182 3.359950 GAAAGTACTCCCTCCGTTCCTA 58.640 50.000 0.00 0.00 0.00 2.94
5319 6183 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
5320 6184 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5321 6185 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5322 6186 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5323 6187 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5324 6188 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
5325 6189 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
5326 6190 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5327 6191 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5328 6192 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5329 6193 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5330 6194 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5331 6195 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5332 6196 8.645110 CCCTCCGTTCCTAAATATAAGTCTTTA 58.355 37.037 0.00 0.00 0.00 1.85
5349 6213 7.989947 AGTCTTTATAGGGTTTCCACTATGA 57.010 36.000 0.00 0.00 32.51 2.15
5350 6214 8.388656 AGTCTTTATAGGGTTTCCACTATGAA 57.611 34.615 0.00 0.00 32.51 2.57
5351 6215 9.004231 AGTCTTTATAGGGTTTCCACTATGAAT 57.996 33.333 0.00 0.00 32.51 2.57
5352 6216 9.628500 GTCTTTATAGGGTTTCCACTATGAATT 57.372 33.333 0.00 0.00 32.51 2.17
5359 6223 6.990349 AGGGTTTCCACTATGAATTACATACG 59.010 38.462 0.00 0.00 36.63 3.06
5360 6224 6.204108 GGGTTTCCACTATGAATTACATACGG 59.796 42.308 0.00 0.00 40.07 4.02
5361 6225 6.987992 GGTTTCCACTATGAATTACATACGGA 59.012 38.462 0.00 0.00 40.07 4.69
5362 6226 7.660208 GGTTTCCACTATGAATTACATACGGAT 59.340 37.037 0.00 0.00 37.58 4.18
5363 6227 8.495949 GTTTCCACTATGAATTACATACGGATG 58.504 37.037 5.94 5.94 37.58 3.51
5365 6229 8.411991 TCCACTATGAATTACATACGGATGTA 57.588 34.615 16.71 16.71 44.77 2.29
5366 6230 9.031537 TCCACTATGAATTACATACGGATGTAT 57.968 33.333 20.99 7.47 45.77 2.29
5379 6243 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
5383 6247 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
5385 6249 9.994432 GGATGTATATAGATGCATTTTAAGTGC 57.006 33.333 0.00 5.47 38.38 4.40
5386 6250 9.694520 GATGTATATAGATGCATTTTAAGTGCG 57.305 33.333 0.00 0.00 45.37 5.34
5387 6251 8.028540 TGTATATAGATGCATTTTAAGTGCGG 57.971 34.615 0.00 0.00 45.37 5.69
5388 6252 7.875554 TGTATATAGATGCATTTTAAGTGCGGA 59.124 33.333 0.00 0.00 45.37 5.54
5389 6253 7.928307 ATATAGATGCATTTTAAGTGCGGAT 57.072 32.000 0.00 0.00 45.37 4.18
5390 6254 4.989279 AGATGCATTTTAAGTGCGGATT 57.011 36.364 0.00 0.00 45.37 3.01
5391 6255 4.925068 AGATGCATTTTAAGTGCGGATTC 58.075 39.130 0.00 3.04 45.37 2.52
5392 6256 4.398988 AGATGCATTTTAAGTGCGGATTCA 59.601 37.500 0.00 0.00 45.37 2.57
5393 6257 4.717233 TGCATTTTAAGTGCGGATTCAT 57.283 36.364 7.87 0.00 45.37 2.57
5394 6258 5.070770 TGCATTTTAAGTGCGGATTCATT 57.929 34.783 7.87 0.00 45.37 2.57
5395 6259 5.101628 TGCATTTTAAGTGCGGATTCATTC 58.898 37.500 7.87 0.00 45.37 2.67
5396 6260 5.101628 GCATTTTAAGTGCGGATTCATTCA 58.898 37.500 0.00 0.00 32.29 2.57
5397 6261 5.750067 GCATTTTAAGTGCGGATTCATTCAT 59.250 36.000 0.00 0.00 32.29 2.57
5398 6262 6.256321 GCATTTTAAGTGCGGATTCATTCATT 59.744 34.615 0.00 0.00 32.29 2.57
5399 6263 7.201548 GCATTTTAAGTGCGGATTCATTCATTT 60.202 33.333 0.00 0.00 32.29 2.32
5400 6264 8.658609 CATTTTAAGTGCGGATTCATTCATTTT 58.341 29.630 0.00 0.00 0.00 1.82
5401 6265 7.579589 TTTAAGTGCGGATTCATTCATTTTG 57.420 32.000 0.00 0.00 0.00 2.44
5402 6266 3.514645 AGTGCGGATTCATTCATTTTGC 58.485 40.909 0.00 0.00 0.00 3.68
5403 6267 3.194116 AGTGCGGATTCATTCATTTTGCT 59.806 39.130 0.00 0.00 0.00 3.91
5404 6268 3.549070 GTGCGGATTCATTCATTTTGCTC 59.451 43.478 0.00 0.00 0.00 4.26
5405 6269 3.118542 GCGGATTCATTCATTTTGCTCC 58.881 45.455 0.00 0.00 0.00 4.70
5406 6270 3.365832 CGGATTCATTCATTTTGCTCCG 58.634 45.455 0.00 0.00 38.51 4.63
5407 6271 3.181497 CGGATTCATTCATTTTGCTCCGT 60.181 43.478 0.00 0.00 39.53 4.69
5408 6272 4.035091 CGGATTCATTCATTTTGCTCCGTA 59.965 41.667 0.00 0.00 39.53 4.02
5409 6273 5.277974 CGGATTCATTCATTTTGCTCCGTAT 60.278 40.000 0.00 0.00 39.53 3.06
5410 6274 5.916883 GGATTCATTCATTTTGCTCCGTATG 59.083 40.000 0.00 0.00 0.00 2.39
5411 6275 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
5412 6276 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
5413 6277 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
5414 6278 4.875544 TTCATTTTGCTCCGTATGTAGC 57.124 40.909 0.00 0.00 39.25 3.58
5415 6279 3.202906 TCATTTTGCTCCGTATGTAGCC 58.797 45.455 0.00 0.00 37.97 3.93
5416 6280 2.032680 TTTTGCTCCGTATGTAGCCC 57.967 50.000 0.00 0.00 37.97 5.19
5417 6281 0.906066 TTTGCTCCGTATGTAGCCCA 59.094 50.000 0.00 0.00 37.97 5.36
5418 6282 1.128200 TTGCTCCGTATGTAGCCCAT 58.872 50.000 0.00 0.00 37.97 4.00
5419 6283 0.679505 TGCTCCGTATGTAGCCCATC 59.320 55.000 0.00 0.00 37.97 3.51
5420 6284 0.969894 GCTCCGTATGTAGCCCATCT 59.030 55.000 0.00 0.00 34.86 2.90
5421 6285 2.168496 GCTCCGTATGTAGCCCATCTA 58.832 52.381 0.00 0.00 34.86 1.98
5422 6286 2.164624 GCTCCGTATGTAGCCCATCTAG 59.835 54.545 0.00 0.00 34.86 2.43
5423 6287 3.422796 CTCCGTATGTAGCCCATCTAGT 58.577 50.000 0.00 0.00 34.86 2.57
5424 6288 3.154710 TCCGTATGTAGCCCATCTAGTG 58.845 50.000 0.00 0.00 34.86 2.74
5442 6306 9.442047 CATCTAGTGGAATTTCTACAAAGACTT 57.558 33.333 14.38 2.08 29.78 3.01
5444 6308 9.924650 TCTAGTGGAATTTCTACAAAGACTTAC 57.075 33.333 14.38 0.00 29.47 2.34
5445 6309 9.706691 CTAGTGGAATTTCTACAAAGACTTACA 57.293 33.333 14.38 0.00 29.47 2.41
5447 6311 9.574516 AGTGGAATTTCTACAAAGACTTACATT 57.425 29.630 14.38 0.00 29.47 2.71
5455 6319 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
5456 6320 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
5457 6321 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
5458 6322 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
5459 6323 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
5460 6324 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
5461 6325 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
5462 6326 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
5463 6327 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
5464 6328 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
5465 6329 4.296056 ACATTTAGGAACGGAGGGAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
5466 6330 4.720273 ACATTTAGGAACGGAGGGAGTATT 59.280 41.667 0.00 0.00 0.00 1.89
5481 6345 3.432326 GGAGTATTGGTTAGTCTGCCTGG 60.432 52.174 0.00 0.00 31.82 4.45
5483 6347 4.359105 AGTATTGGTTAGTCTGCCTGGTA 58.641 43.478 0.00 0.00 0.00 3.25
5488 6352 7.626999 ATTGGTTAGTCTGCCTGGTAATATA 57.373 36.000 0.00 0.00 0.00 0.86
5492 6356 9.161572 TGGTTAGTCTGCCTGGTAATATATAAA 57.838 33.333 0.00 0.00 0.00 1.40
5511 6375 4.787260 AAATAACATGTGCTGATGTGCA 57.213 36.364 0.00 0.00 36.66 4.57
5512 6376 4.994907 AATAACATGTGCTGATGTGCAT 57.005 36.364 0.00 0.00 45.23 3.96
5513 6377 4.994907 ATAACATGTGCTGATGTGCATT 57.005 36.364 0.00 0.00 45.23 3.56
5514 6378 3.671008 AACATGTGCTGATGTGCATTT 57.329 38.095 0.00 0.00 45.23 2.32
5515 6379 3.226346 ACATGTGCTGATGTGCATTTC 57.774 42.857 0.00 0.00 45.23 2.17
5516 6380 2.182014 CATGTGCTGATGTGCATTTCG 58.818 47.619 0.00 0.00 45.23 3.46
5517 6381 0.522626 TGTGCTGATGTGCATTTCGG 59.477 50.000 0.00 0.00 45.23 4.30
5518 6382 0.179156 GTGCTGATGTGCATTTCGGG 60.179 55.000 9.07 0.56 45.23 5.14
5519 6383 1.226773 GCTGATGTGCATTTCGGGC 60.227 57.895 9.07 5.69 0.00 6.13
5520 6384 1.936436 GCTGATGTGCATTTCGGGCA 61.936 55.000 9.07 0.00 39.32 5.36
5521 6385 0.527113 CTGATGTGCATTTCGGGCAA 59.473 50.000 0.00 0.00 43.91 4.52
5522 6386 1.135527 CTGATGTGCATTTCGGGCAAT 59.864 47.619 0.00 0.00 43.91 3.56
5523 6387 1.549620 TGATGTGCATTTCGGGCAATT 59.450 42.857 0.00 0.00 43.91 2.32
5524 6388 2.028294 TGATGTGCATTTCGGGCAATTT 60.028 40.909 0.00 0.00 43.91 1.82
5525 6389 2.540265 TGTGCATTTCGGGCAATTTT 57.460 40.000 0.00 0.00 43.91 1.82
5526 6390 2.843701 TGTGCATTTCGGGCAATTTTT 58.156 38.095 0.00 0.00 43.91 1.94
5548 6412 1.179814 TTTTTGCGGGTACGGGCAAT 61.180 50.000 18.94 0.00 45.10 3.56
5570 6434 8.567948 GCAATTATGGTATGCTTGTAGTGTTAT 58.432 33.333 0.00 0.00 37.12 1.89
5598 6462 5.525378 CAGGTTACTTCCTGCTATTCATGTC 59.475 44.000 0.00 0.00 46.53 3.06
5610 6474 1.808411 TTCATGTCCTTTGTCGCTCC 58.192 50.000 0.00 0.00 0.00 4.70
5635 6499 1.585297 AACCTTTGCAAGCATGTTGC 58.415 45.000 19.66 19.66 45.46 4.17
5636 6500 0.249996 ACCTTTGCAAGCATGTTGCC 60.250 50.000 22.02 10.68 46.52 4.52
5638 6502 1.286354 CTTTGCAAGCATGTTGCCCG 61.286 55.000 22.02 11.67 46.52 6.13
5644 6508 1.745087 CAAGCATGTTGCCCGTATTCT 59.255 47.619 0.00 0.00 46.52 2.40
5679 6543 0.551396 AGGTTTGCCCCTACCATAGC 59.449 55.000 0.00 0.00 36.87 2.97
5691 6555 1.048601 ACCATAGCTGTCCATACGGG 58.951 55.000 0.00 0.00 38.37 5.28
5721 6585 3.839490 TCCATTGTAAAGACCTCGGGTTA 59.161 43.478 0.00 0.00 35.25 2.85
5747 6639 1.607148 GAGTTACACAGGCCAAACACC 59.393 52.381 5.01 0.00 0.00 4.16
5766 6658 7.404671 AACACCAAAGTTGAGAACACTTTAT 57.595 32.000 0.00 0.00 33.05 1.40
5767 6659 7.404671 ACACCAAAGTTGAGAACACTTTATT 57.595 32.000 0.00 0.00 33.05 1.40
5768 6660 8.514330 ACACCAAAGTTGAGAACACTTTATTA 57.486 30.769 0.00 0.00 33.05 0.98
5769 6661 9.131791 ACACCAAAGTTGAGAACACTTTATTAT 57.868 29.630 0.00 0.00 33.05 1.28
5781 6673 6.505044 ACACTTTATTATTTTGGGACGGAC 57.495 37.500 0.00 0.00 0.00 4.79
5783 6675 4.637091 ACTTTATTATTTTGGGACGGACCG 59.363 41.667 13.61 13.61 40.11 4.79
5823 6715 0.036732 TCCATATTCCGGCATGCTCC 59.963 55.000 18.92 0.00 0.00 4.70
5839 6731 5.220854 GCATGCTCCGATATGTTGTAAAACT 60.221 40.000 11.37 0.00 0.00 2.66
5841 6733 7.567571 CATGCTCCGATATGTTGTAAAACTAG 58.432 38.462 0.00 0.00 0.00 2.57
5849 6741 9.671521 CGATATGTTGTAAAACTAGTTTCTTCG 57.328 33.333 20.78 13.53 31.45 3.79
5867 6759 4.328983 TCTTCGACAGTGACAACAAAGAAC 59.671 41.667 0.00 0.00 0.00 3.01
5874 6766 4.034510 CAGTGACAACAAAGAACTCTCCAC 59.965 45.833 0.00 0.00 0.00 4.02
5889 6781 2.358898 TCTCCACTTGTGCAAAAAGCTC 59.641 45.455 9.71 0.00 45.94 4.09
5890 6782 2.360165 CTCCACTTGTGCAAAAAGCTCT 59.640 45.455 9.71 0.00 45.94 4.09
5891 6783 2.099592 TCCACTTGTGCAAAAAGCTCTG 59.900 45.455 9.71 2.57 45.94 3.35
5897 6789 2.957680 TGTGCAAAAAGCTCTGATCCAA 59.042 40.909 0.00 0.00 45.94 3.53
5908 6800 3.574749 CTCTGATCCAAGATCCTCCTCA 58.425 50.000 2.29 0.00 0.00 3.86
5946 8780 5.124457 ACATGTGATTGCTTACCTGCTAAAG 59.876 40.000 0.00 0.00 0.00 1.85
5948 8782 4.695455 TGTGATTGCTTACCTGCTAAAGAC 59.305 41.667 0.00 0.00 0.00 3.01
5952 8786 6.434028 TGATTGCTTACCTGCTAAAGACATTT 59.566 34.615 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 6.994496 ACATAATACTCATGCAGCAATGTACT 59.006 34.615 0.00 0.00 0.00 2.73
91 96 6.205270 CCACATAATACTCATGCAGCAATGTA 59.795 38.462 0.00 3.56 0.00 2.29
161 166 6.362551 CGTATCATAGACGATGTACCTTTTGG 59.637 42.308 0.00 0.00 42.98 3.28
185 190 7.081349 TCCAGTTCAAATACAAATGCTAAACG 58.919 34.615 0.00 0.00 0.00 3.60
222 227 4.002982 AGATCACTTGTTGAATGCGCTTA 58.997 39.130 9.73 0.00 37.92 3.09
517 909 3.998672 GCGAGGTTGGTCCGGACA 61.999 66.667 34.40 18.59 41.99 4.02
518 910 4.754667 GGCGAGGTTGGTCCGGAC 62.755 72.222 27.04 27.04 41.99 4.79
542 934 1.635663 GGCGACTGTATGTGTGTGCC 61.636 60.000 0.00 0.00 0.00 5.01
545 937 1.135489 CGTAGGCGACTGTATGTGTGT 60.135 52.381 0.00 0.00 43.88 3.72
570 962 0.622665 AGGAGCCTGAGGGTTTCATG 59.377 55.000 4.00 0.00 34.68 3.07
576 968 2.530151 TTGCAGGAGCCTGAGGGT 60.530 61.111 20.29 1.18 46.30 4.34
587 979 0.535780 TTGTGTGCTCTCCTTGCAGG 60.536 55.000 0.00 0.00 41.41 4.85
631 1023 1.615124 TCGGATTCAGCTCCCCCAA 60.615 57.895 0.00 0.00 31.04 4.12
652 1044 0.695347 ACTAGCTTGCTTCTTGCCCT 59.305 50.000 0.00 0.00 42.00 5.19
663 1055 0.103208 CGCTCCCAGGTACTAGCTTG 59.897 60.000 0.00 0.00 35.57 4.01
665 1057 1.455959 CCGCTCCCAGGTACTAGCT 60.456 63.158 0.00 0.00 35.57 3.32
666 1058 2.499827 CCCGCTCCCAGGTACTAGC 61.500 68.421 0.00 0.00 36.02 3.42
667 1059 2.499827 GCCCGCTCCCAGGTACTAG 61.500 68.421 0.00 0.00 36.02 2.57
668 1060 2.443390 GCCCGCTCCCAGGTACTA 60.443 66.667 0.00 0.00 36.02 1.82
692 1084 1.152368 CCTCCTCCAATCCCATGCC 59.848 63.158 0.00 0.00 0.00 4.40
695 1087 1.384502 TCGCCTCCTCCAATCCCAT 60.385 57.895 0.00 0.00 0.00 4.00
714 1106 2.430244 CCCCGTCACGAGTTCACG 60.430 66.667 0.00 0.00 39.31 4.35
721 1113 3.572447 TAGCTCACCCCCGTCACGA 62.572 63.158 0.00 0.00 0.00 4.35
724 1116 3.066190 CGTAGCTCACCCCCGTCA 61.066 66.667 0.00 0.00 0.00 4.35
733 1125 1.987855 CCCCTTCACCCGTAGCTCA 60.988 63.158 0.00 0.00 0.00 4.26
738 1130 2.686106 GGAGCCCCTTCACCCGTA 60.686 66.667 0.00 0.00 0.00 4.02
841 1236 6.481984 GCGTTTTCTATTTCTCCATCTTCAG 58.518 40.000 0.00 0.00 0.00 3.02
845 1240 4.755411 TCGCGTTTTCTATTTCTCCATCT 58.245 39.130 5.77 0.00 0.00 2.90
848 1243 4.312443 ACTTCGCGTTTTCTATTTCTCCA 58.688 39.130 5.77 0.00 0.00 3.86
850 1245 5.080068 CCAACTTCGCGTTTTCTATTTCTC 58.920 41.667 5.77 0.00 32.27 2.87
861 1256 1.522130 AACGGTCCAACTTCGCGTT 60.522 52.632 5.77 0.00 35.88 4.84
863 1258 2.549282 CAACGGTCCAACTTCGCG 59.451 61.111 0.00 0.00 0.00 5.87
870 1265 2.869101 TCATCAATCCAACGGTCCAA 57.131 45.000 0.00 0.00 0.00 3.53
887 1282 1.302366 GCGATCTGTGCCATTCATCA 58.698 50.000 0.00 0.00 0.00 3.07
904 1299 2.960957 CTACGGATCCCAGCACTGCG 62.961 65.000 6.06 0.00 0.00 5.18
924 1319 2.364632 CATTCCCCTCATTTGCGTGTA 58.635 47.619 0.00 0.00 0.00 2.90
929 1324 1.551883 ACAAGCATTCCCCTCATTTGC 59.448 47.619 0.00 0.00 0.00 3.68
942 1339 3.019564 GGACCTCTTTGCATACAAGCAT 58.980 45.455 0.00 0.00 45.19 3.79
948 1345 1.207329 ACGAGGGACCTCTTTGCATAC 59.793 52.381 15.83 0.00 40.69 2.39
991 1388 0.915364 GTGGCTTGAAGGAGGAGGAT 59.085 55.000 0.00 0.00 0.00 3.24
1024 1421 3.462199 GATAGGCGGGAGTGGTGGC 62.462 68.421 0.00 0.00 0.00 5.01
1096 1493 1.544151 GGAAGGGAAGGGAAGGGGT 60.544 63.158 0.00 0.00 0.00 4.95
1111 1508 2.295602 GGCGGGAGTAGTTGGGGAA 61.296 63.158 0.00 0.00 0.00 3.97
1112 1509 2.686106 GGCGGGAGTAGTTGGGGA 60.686 66.667 0.00 0.00 0.00 4.81
1113 1510 4.157120 CGGCGGGAGTAGTTGGGG 62.157 72.222 0.00 0.00 0.00 4.96
1114 1511 2.573609 CTTCGGCGGGAGTAGTTGGG 62.574 65.000 7.21 0.00 0.00 4.12
1115 1512 1.153628 CTTCGGCGGGAGTAGTTGG 60.154 63.158 7.21 0.00 0.00 3.77
1118 1515 3.459063 GCCTTCGGCGGGAGTAGT 61.459 66.667 7.21 0.00 39.62 2.73
1156 1553 0.107897 TTCCCGTTCGATGATGTGGG 60.108 55.000 0.00 0.00 38.02 4.61
1225 1622 2.423898 CCTCCCGCCGTAGATGTGT 61.424 63.158 0.00 0.00 0.00 3.72
1244 1641 4.737476 AGCAGGGCAGGGAGAGCT 62.737 66.667 0.00 0.00 0.00 4.09
1245 1642 4.173924 GAGCAGGGCAGGGAGAGC 62.174 72.222 0.00 0.00 0.00 4.09
1246 1643 3.847602 CGAGCAGGGCAGGGAGAG 61.848 72.222 0.00 0.00 0.00 3.20
1373 1788 7.749666 ACAGGAGGCTTGTTACATGATTATAT 58.250 34.615 0.00 0.00 0.00 0.86
1376 1791 5.435686 ACAGGAGGCTTGTTACATGATTA 57.564 39.130 0.00 0.00 0.00 1.75
1380 1795 6.648310 CAGATATACAGGAGGCTTGTTACATG 59.352 42.308 0.00 0.00 0.00 3.21
1383 1798 5.542779 CCAGATATACAGGAGGCTTGTTAC 58.457 45.833 0.00 0.00 0.00 2.50
1392 1807 6.582636 TGTAGTTTTGCCAGATATACAGGAG 58.417 40.000 0.00 0.00 0.00 3.69
1399 1814 6.721318 TCTTCCTTGTAGTTTTGCCAGATAT 58.279 36.000 0.00 0.00 0.00 1.63
1407 1828 7.108847 AGGATCTGATCTTCCTTGTAGTTTTG 58.891 38.462 16.61 0.00 39.36 2.44
1545 1974 4.100189 AGCTATGTAAACCTAGAGTGCAGG 59.900 45.833 0.00 0.00 39.25 4.85
1583 2012 6.073167 TCGAGTTCAGTAAGACTAGTGAGTTG 60.073 42.308 0.00 0.00 38.45 3.16
1593 2022 7.085116 TCTTCAAATCTCGAGTTCAGTAAGAC 58.915 38.462 13.13 0.00 0.00 3.01
1604 2033 4.150627 TGCTCGTTTTCTTCAAATCTCGAG 59.849 41.667 5.93 5.93 38.77 4.04
1627 2056 8.282256 ACCTTAATAATTTGGCTACTGGAGAAT 58.718 33.333 0.00 0.00 0.00 2.40
1632 2061 9.574516 AGATTACCTTAATAATTTGGCTACTGG 57.425 33.333 0.00 0.00 0.00 4.00
1659 2088 6.707161 TGGCTGAAGAATTTTTGGAAGATTTG 59.293 34.615 0.00 0.00 0.00 2.32
1662 2091 5.305128 TGTGGCTGAAGAATTTTTGGAAGAT 59.695 36.000 0.00 0.00 0.00 2.40
1726 2167 1.022451 CCGACAATACAACCGGGTGG 61.022 60.000 26.30 8.35 38.42 4.61
1728 2169 0.397564 AACCGACAATACAACCGGGT 59.602 50.000 6.32 0.00 45.63 5.28
1761 2202 7.807977 ATCATTATCACCAACATAGACCAAC 57.192 36.000 0.00 0.00 0.00 3.77
1831 2272 1.701704 AACGAGTAAACCGGCGTTAG 58.298 50.000 12.62 0.00 44.07 2.34
1896 2358 5.472137 ACACATGTTAAACACCGATTAAGCT 59.528 36.000 0.00 0.00 0.00 3.74
1941 2403 4.440525 CCATTCATCACGAGGGGAAATTTG 60.441 45.833 0.00 0.00 0.00 2.32
2047 2509 2.762887 TGGTTGTCAATTTTGTGCCAGA 59.237 40.909 0.00 0.00 0.00 3.86
2117 2579 4.192317 CCAGGTTAGCATGGTCTTACTTC 58.808 47.826 0.00 0.00 41.31 3.01
2154 2624 6.127814 CCATATAATGCAATCTCACATGTCCC 60.128 42.308 0.00 0.00 0.00 4.46
2169 2639 8.697846 TCGCAAGTAATACTACCATATAATGC 57.302 34.615 0.00 0.00 39.48 3.56
2191 2661 5.799936 ACACATTATTTTGCACAATACTCGC 59.200 36.000 4.79 0.00 0.00 5.03
2282 2752 2.680577 CCTGCACAAAAGGAAGATTGC 58.319 47.619 0.00 0.00 36.91 3.56
2283 2753 2.298163 AGCCTGCACAAAAGGAAGATTG 59.702 45.455 0.00 0.00 36.91 2.67
2349 2821 9.980780 GTTTAATCTCTTTCTGCATTCTTAGAC 57.019 33.333 0.00 0.00 0.00 2.59
2401 2873 7.398618 TCCTCATCAGACAGATTAAGAGAAACT 59.601 37.037 0.00 0.00 33.72 2.66
2499 2971 2.489938 TAGGCACTGTTTGGGATGAC 57.510 50.000 0.00 0.00 41.52 3.06
2543 3225 6.929049 AGTAGAAAAGTCACATCAAATCGACA 59.071 34.615 0.00 0.00 0.00 4.35
2727 3412 5.595952 GGAGGTTGAAAAGGATATCTGCATT 59.404 40.000 2.05 0.00 0.00 3.56
3221 4031 5.451937 CGGATTAGCATACTTCTGAGTCCAA 60.452 44.000 0.00 0.00 37.33 3.53
3228 4038 3.062763 CTGCCGGATTAGCATACTTCTG 58.937 50.000 5.05 0.00 40.04 3.02
3379 4189 4.823989 CAGGTTCTGTGAGTTCTCCATTTT 59.176 41.667 0.00 0.00 0.00 1.82
3437 4247 2.545731 GCATCTTCTTTCGACTCCCTC 58.454 52.381 0.00 0.00 0.00 4.30
3548 4358 1.961394 GAGTGGATACTGCCGTGGATA 59.039 52.381 0.00 0.00 37.25 2.59
3624 4434 4.445453 CACTATCAGCACTGGCAGAAATA 58.555 43.478 23.66 9.61 44.61 1.40
3639 4449 9.567776 TGTTTCTTTGAAATTACTCCACTATCA 57.432 29.630 0.00 0.00 0.00 2.15
3743 4553 0.469917 ACCTTCCACACTGTCACTGG 59.530 55.000 0.00 0.00 0.00 4.00
3749 4559 2.105993 GGGAACTTACCTTCCACACTGT 59.894 50.000 0.59 0.00 41.57 3.55
3766 4576 2.649312 ACACTGGAAGATGATTGGGGAA 59.351 45.455 0.00 0.00 37.43 3.97
4006 4816 7.121168 CAGATTATTAAAACCTGGCAGTGAAGA 59.879 37.037 14.43 0.00 0.00 2.87
4012 4822 5.357878 TCTGCAGATTATTAAAACCTGGCAG 59.642 40.000 13.74 7.75 34.00 4.85
4015 4825 9.143631 CTTTTTCTGCAGATTATTAAAACCTGG 57.856 33.333 19.04 5.38 0.00 4.45
4040 4850 4.982241 TCCTTTGAAACATCTGAGGACT 57.018 40.909 0.00 0.00 0.00 3.85
4107 4917 5.626142 TGGGTTTTAGAAAGTACATGCTCA 58.374 37.500 0.00 0.00 0.00 4.26
4252 5062 7.675161 TCCTATCATCCTGTGAACAATTAGA 57.325 36.000 0.00 0.00 40.97 2.10
4314 5124 3.003763 AGGTCCCTGGTTCGGCTC 61.004 66.667 0.00 0.00 0.00 4.70
4357 5167 1.019278 GGACGATCGCTTTGGCTGAA 61.019 55.000 16.60 0.00 36.09 3.02
4666 5489 4.012374 GGGACATCTTCATCTTCAAAGCA 58.988 43.478 0.00 0.00 0.00 3.91
4744 5567 3.188254 CACAACAGTCGCCACATCATAAA 59.812 43.478 0.00 0.00 0.00 1.40
4962 5789 9.630098 ATCAATTTTACTGAACAAGCAAGTATG 57.370 29.630 0.00 0.00 0.00 2.39
4966 5793 9.683069 ACTTATCAATTTTACTGAACAAGCAAG 57.317 29.630 0.00 0.00 0.00 4.01
5032 5859 9.028284 TGCTCACAGATATATGATTAGATGTGA 57.972 33.333 3.93 4.80 42.38 3.58
5033 5860 9.649167 TTGCTCACAGATATATGATTAGATGTG 57.351 33.333 3.93 0.00 38.46 3.21
5034 5861 9.872721 CTTGCTCACAGATATATGATTAGATGT 57.127 33.333 3.93 0.00 0.00 3.06
5035 5862 8.819015 GCTTGCTCACAGATATATGATTAGATG 58.181 37.037 3.93 0.00 0.00 2.90
5036 5863 8.760735 AGCTTGCTCACAGATATATGATTAGAT 58.239 33.333 3.93 0.00 0.00 1.98
5038 5865 7.220491 CGAGCTTGCTCACAGATATATGATTAG 59.780 40.741 20.59 0.00 0.00 1.73
5040 5867 5.868258 CGAGCTTGCTCACAGATATATGATT 59.132 40.000 20.59 0.00 0.00 2.57
5115 5972 3.243401 GCCAGGAAATAAATGGGCTTACG 60.243 47.826 0.00 0.00 38.37 3.18
5126 5983 1.173043 CACCGCTTGCCAGGAAATAA 58.827 50.000 0.00 0.00 0.00 1.40
5137 5994 3.173599 CAAATACAGAATGCACCGCTTG 58.826 45.455 0.00 0.00 42.53 4.01
5141 5998 4.793071 TGAAACAAATACAGAATGCACCG 58.207 39.130 0.00 0.00 42.53 4.94
5204 6068 7.136119 TCGGAAACAATCAGTACAAAATTGTC 58.864 34.615 16.16 8.51 41.47 3.18
5216 6080 6.863126 AGCTTGTAATTTTCGGAAACAATCAG 59.137 34.615 1.96 0.00 0.00 2.90
5228 6092 4.617223 GCGACCTTTCAGCTTGTAATTTTC 59.383 41.667 0.00 0.00 0.00 2.29
5234 6098 2.248280 TTGCGACCTTTCAGCTTGTA 57.752 45.000 0.00 0.00 0.00 2.41
5243 6107 7.148239 CCATAGAGACTAAATTTTGCGACCTTT 60.148 37.037 0.00 0.00 0.00 3.11
5249 6113 5.276868 CGTCCCATAGAGACTAAATTTTGCG 60.277 44.000 0.00 0.00 31.83 4.85
5256 6120 8.929260 TTATATGACGTCCCATAGAGACTAAA 57.071 34.615 14.12 0.00 33.08 1.85
5257 6121 8.380867 TCTTATATGACGTCCCATAGAGACTAA 58.619 37.037 14.12 1.07 33.08 2.24
5263 6127 6.603599 CCTCATCTTATATGACGTCCCATAGA 59.396 42.308 14.12 9.68 33.08 1.98
5272 6136 2.263077 GGCGCCTCATCTTATATGACG 58.737 52.381 22.15 0.00 0.00 4.35
5276 6140 1.556911 CAGGGGCGCCTCATCTTATAT 59.443 52.381 31.81 0.48 0.00 0.86
5282 6146 3.344137 TTTCCAGGGGCGCCTCATC 62.344 63.158 31.81 11.01 0.00 2.92
5287 6151 2.437895 GTACTTTCCAGGGGCGCC 60.438 66.667 21.18 21.18 0.00 6.53
5288 6152 1.449778 GAGTACTTTCCAGGGGCGC 60.450 63.158 0.00 0.00 0.00 6.53
5289 6153 1.221021 GGAGTACTTTCCAGGGGCG 59.779 63.158 0.00 0.00 37.20 6.13
5291 6155 1.205055 GAGGGAGTACTTTCCAGGGG 58.795 60.000 15.66 0.00 39.09 4.79
5292 6156 1.205055 GGAGGGAGTACTTTCCAGGG 58.795 60.000 15.66 0.00 39.09 4.45
5293 6157 0.824759 CGGAGGGAGTACTTTCCAGG 59.175 60.000 17.17 5.39 39.09 4.45
5296 6160 1.206610 GGAACGGAGGGAGTACTTTCC 59.793 57.143 0.00 0.27 36.46 3.13
5298 6162 2.322339 AGGAACGGAGGGAGTACTTT 57.678 50.000 0.00 0.00 0.00 2.66
5300 6164 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
5301 6165 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
5302 6166 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5303 6167 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5304 6168 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5305 6169 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5306 6170 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5323 6187 9.496710 TCATAGTGGAAACCCTATAAAGACTTA 57.503 33.333 0.00 0.00 0.00 2.24
5324 6188 8.388656 TCATAGTGGAAACCCTATAAAGACTT 57.611 34.615 0.00 0.00 0.00 3.01
5325 6189 7.989947 TCATAGTGGAAACCCTATAAAGACT 57.010 36.000 0.00 0.00 0.00 3.24
5326 6190 9.628500 AATTCATAGTGGAAACCCTATAAAGAC 57.372 33.333 0.00 0.00 0.00 3.01
5333 6197 8.145767 CGTATGTAATTCATAGTGGAAACCCTA 58.854 37.037 0.00 0.00 39.36 3.53
5334 6198 6.990349 CGTATGTAATTCATAGTGGAAACCCT 59.010 38.462 0.00 0.00 39.36 4.34
5335 6199 6.204108 CCGTATGTAATTCATAGTGGAAACCC 59.796 42.308 8.73 0.00 39.36 4.11
5336 6200 6.987992 TCCGTATGTAATTCATAGTGGAAACC 59.012 38.462 11.90 0.00 39.60 3.27
5337 6201 8.495949 CATCCGTATGTAATTCATAGTGGAAAC 58.504 37.037 15.16 0.00 42.65 2.78
5338 6202 8.208224 ACATCCGTATGTAATTCATAGTGGAAA 58.792 33.333 15.16 3.76 44.66 3.13
5339 6203 7.732025 ACATCCGTATGTAATTCATAGTGGAA 58.268 34.615 15.16 0.00 44.66 3.53
5340 6204 7.297936 ACATCCGTATGTAATTCATAGTGGA 57.702 36.000 14.34 14.34 44.66 4.02
5357 6221 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
5359 6223 9.994432 GCACTTAAAATGCATCTATATACATCC 57.006 33.333 0.00 0.00 42.88 3.51
5360 6224 9.694520 CGCACTTAAAATGCATCTATATACATC 57.305 33.333 0.00 0.00 43.57 3.06
5361 6225 8.668353 CCGCACTTAAAATGCATCTATATACAT 58.332 33.333 0.00 0.00 43.57 2.29
5362 6226 7.875554 TCCGCACTTAAAATGCATCTATATACA 59.124 33.333 0.00 0.00 43.57 2.29
5363 6227 8.251750 TCCGCACTTAAAATGCATCTATATAC 57.748 34.615 0.00 0.00 43.57 1.47
5364 6228 9.448438 AATCCGCACTTAAAATGCATCTATATA 57.552 29.630 0.00 0.00 43.57 0.86
5365 6229 7.928307 ATCCGCACTTAAAATGCATCTATAT 57.072 32.000 0.00 0.00 43.57 0.86
5366 6230 7.443879 TGAATCCGCACTTAAAATGCATCTATA 59.556 33.333 0.00 0.00 43.57 1.31
5367 6231 6.262944 TGAATCCGCACTTAAAATGCATCTAT 59.737 34.615 0.00 0.00 43.57 1.98
5368 6232 5.588246 TGAATCCGCACTTAAAATGCATCTA 59.412 36.000 0.00 0.00 43.57 1.98
5369 6233 4.398988 TGAATCCGCACTTAAAATGCATCT 59.601 37.500 0.00 0.00 43.57 2.90
5370 6234 4.671377 TGAATCCGCACTTAAAATGCATC 58.329 39.130 0.00 5.04 43.57 3.91
5371 6235 4.717233 TGAATCCGCACTTAAAATGCAT 57.283 36.364 10.95 0.00 43.57 3.96
5372 6236 4.717233 ATGAATCCGCACTTAAAATGCA 57.283 36.364 10.95 0.00 43.57 3.96
5373 6237 5.101628 TGAATGAATCCGCACTTAAAATGC 58.898 37.500 1.96 1.96 39.81 3.56
5374 6238 7.760131 AATGAATGAATCCGCACTTAAAATG 57.240 32.000 0.00 0.00 0.00 2.32
5375 6239 8.658609 CAAAATGAATGAATCCGCACTTAAAAT 58.341 29.630 0.00 0.00 0.00 1.82
5376 6240 7.359933 GCAAAATGAATGAATCCGCACTTAAAA 60.360 33.333 0.00 0.00 0.00 1.52
5377 6241 6.090628 GCAAAATGAATGAATCCGCACTTAAA 59.909 34.615 0.00 0.00 0.00 1.52
5378 6242 5.576384 GCAAAATGAATGAATCCGCACTTAA 59.424 36.000 0.00 0.00 0.00 1.85
5379 6243 5.101628 GCAAAATGAATGAATCCGCACTTA 58.898 37.500 0.00 0.00 0.00 2.24
5380 6244 3.928375 GCAAAATGAATGAATCCGCACTT 59.072 39.130 0.00 0.00 0.00 3.16
5381 6245 3.194116 AGCAAAATGAATGAATCCGCACT 59.806 39.130 0.00 0.00 0.00 4.40
5382 6246 3.514645 AGCAAAATGAATGAATCCGCAC 58.485 40.909 0.00 0.00 0.00 5.34
5383 6247 3.429272 GGAGCAAAATGAATGAATCCGCA 60.429 43.478 0.00 0.00 0.00 5.69
5384 6248 3.118542 GGAGCAAAATGAATGAATCCGC 58.881 45.455 0.00 0.00 0.00 5.54
5385 6249 3.181497 ACGGAGCAAAATGAATGAATCCG 60.181 43.478 14.85 14.85 45.97 4.18
5386 6250 4.376340 ACGGAGCAAAATGAATGAATCC 57.624 40.909 0.00 0.00 0.00 3.01
5387 6251 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
5388 6252 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
5389 6253 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
5390 6254 5.007626 GCTACATACGGAGCAAAATGAATGA 59.992 40.000 0.00 0.00 38.62 2.57
5391 6255 5.207768 GCTACATACGGAGCAAAATGAATG 58.792 41.667 0.00 0.00 38.62 2.67
5392 6256 4.275936 GGCTACATACGGAGCAAAATGAAT 59.724 41.667 0.00 0.00 40.64 2.57
5393 6257 3.625764 GGCTACATACGGAGCAAAATGAA 59.374 43.478 0.00 0.00 40.64 2.57
5394 6258 3.202906 GGCTACATACGGAGCAAAATGA 58.797 45.455 0.00 0.00 40.64 2.57
5395 6259 2.290641 GGGCTACATACGGAGCAAAATG 59.709 50.000 0.00 0.00 40.64 2.32
5396 6260 2.092646 TGGGCTACATACGGAGCAAAAT 60.093 45.455 0.00 0.00 40.64 1.82
5397 6261 1.279558 TGGGCTACATACGGAGCAAAA 59.720 47.619 0.00 0.00 40.64 2.44
5398 6262 0.906066 TGGGCTACATACGGAGCAAA 59.094 50.000 0.00 0.00 40.64 3.68
5399 6263 1.070134 GATGGGCTACATACGGAGCAA 59.930 52.381 0.00 0.00 40.72 3.91
5400 6264 0.679505 GATGGGCTACATACGGAGCA 59.320 55.000 0.00 0.00 40.72 4.26
5401 6265 0.969894 AGATGGGCTACATACGGAGC 59.030 55.000 0.00 0.00 40.72 4.70
5402 6266 3.191581 CACTAGATGGGCTACATACGGAG 59.808 52.174 0.00 0.00 40.72 4.63
5403 6267 3.154710 CACTAGATGGGCTACATACGGA 58.845 50.000 0.00 0.00 40.72 4.69
5404 6268 2.231478 CCACTAGATGGGCTACATACGG 59.769 54.545 0.00 0.00 45.95 4.02
5405 6269 3.577649 CCACTAGATGGGCTACATACG 57.422 52.381 0.00 0.00 45.95 3.06
5414 6278 7.281100 GTCTTTGTAGAAATTCCACTAGATGGG 59.719 40.741 0.00 0.00 39.65 4.00
5415 6279 8.043710 AGTCTTTGTAGAAATTCCACTAGATGG 58.956 37.037 0.00 0.43 40.20 3.51
5416 6280 9.442047 AAGTCTTTGTAGAAATTCCACTAGATG 57.558 33.333 0.00 0.00 30.65 2.90
5418 6282 9.924650 GTAAGTCTTTGTAGAAATTCCACTAGA 57.075 33.333 0.00 0.00 30.65 2.43
5419 6283 9.706691 TGTAAGTCTTTGTAGAAATTCCACTAG 57.293 33.333 0.00 0.00 30.65 2.57
5421 6285 9.574516 AATGTAAGTCTTTGTAGAAATTCCACT 57.425 29.630 0.00 0.00 30.65 4.00
5429 6293 9.199982 CGTTCCTAAATGTAAGTCTTTGTAGAA 57.800 33.333 0.00 0.00 30.65 2.10
5430 6294 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
5431 6295 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
5432 6296 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
5433 6297 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
5434 6298 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
5435 6299 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
5436 6300 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
5437 6301 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
5438 6302 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
5439 6303 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
5440 6304 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
5441 6305 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
5442 6306 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
5443 6307 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
5444 6308 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
5445 6309 4.102681 CCAATACTCCCTCCGTTCCTAAAT 59.897 45.833 0.00 0.00 0.00 1.40
5446 6310 3.453353 CCAATACTCCCTCCGTTCCTAAA 59.547 47.826 0.00 0.00 0.00 1.85
5447 6311 3.036091 CCAATACTCCCTCCGTTCCTAA 58.964 50.000 0.00 0.00 0.00 2.69
5448 6312 2.023695 ACCAATACTCCCTCCGTTCCTA 60.024 50.000 0.00 0.00 0.00 2.94
5449 6313 1.273666 ACCAATACTCCCTCCGTTCCT 60.274 52.381 0.00 0.00 0.00 3.36
5450 6314 1.201424 ACCAATACTCCCTCCGTTCC 58.799 55.000 0.00 0.00 0.00 3.62
5451 6315 3.450096 ACTAACCAATACTCCCTCCGTTC 59.550 47.826 0.00 0.00 0.00 3.95
5452 6316 3.447950 ACTAACCAATACTCCCTCCGTT 58.552 45.455 0.00 0.00 0.00 4.44
5453 6317 3.029570 GACTAACCAATACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
5454 6318 3.068307 CAGACTAACCAATACTCCCTCCG 59.932 52.174 0.00 0.00 0.00 4.63
5455 6319 3.181464 GCAGACTAACCAATACTCCCTCC 60.181 52.174 0.00 0.00 0.00 4.30
5456 6320 3.181464 GGCAGACTAACCAATACTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
5457 6321 2.772515 GGCAGACTAACCAATACTCCCT 59.227 50.000 0.00 0.00 0.00 4.20
5458 6322 2.772515 AGGCAGACTAACCAATACTCCC 59.227 50.000 0.00 0.00 0.00 4.30
5459 6323 3.432326 CCAGGCAGACTAACCAATACTCC 60.432 52.174 0.00 0.00 0.00 3.85
5460 6324 3.197983 ACCAGGCAGACTAACCAATACTC 59.802 47.826 0.00 0.00 0.00 2.59
5461 6325 3.182152 ACCAGGCAGACTAACCAATACT 58.818 45.455 0.00 0.00 0.00 2.12
5462 6326 3.629142 ACCAGGCAGACTAACCAATAC 57.371 47.619 0.00 0.00 0.00 1.89
5463 6327 5.968676 ATTACCAGGCAGACTAACCAATA 57.031 39.130 0.00 0.00 0.00 1.90
5464 6328 4.862641 ATTACCAGGCAGACTAACCAAT 57.137 40.909 0.00 0.00 0.00 3.16
5465 6329 5.968676 ATATTACCAGGCAGACTAACCAA 57.031 39.130 0.00 0.00 0.00 3.67
5466 6330 8.730093 TTATATATTACCAGGCAGACTAACCA 57.270 34.615 0.00 0.00 0.00 3.67
5488 6352 6.453926 TGCACATCAGCACATGTTATTTAT 57.546 33.333 0.00 0.00 40.11 1.40
5501 6365 1.226773 GCCCGAAATGCACATCAGC 60.227 57.895 0.00 0.00 0.00 4.26
5503 6367 1.184431 ATTGCCCGAAATGCACATCA 58.816 45.000 0.00 0.00 38.72 3.07
5504 6368 2.298411 AATTGCCCGAAATGCACATC 57.702 45.000 0.00 0.00 38.72 3.06
5505 6369 2.766345 AAATTGCCCGAAATGCACAT 57.234 40.000 0.00 0.00 38.72 3.21
5529 6393 1.826921 TTGCCCGTACCCGCAAAAA 60.827 52.632 10.88 0.00 41.80 1.94
5530 6394 2.203308 TTGCCCGTACCCGCAAAA 60.203 55.556 10.88 0.00 41.80 2.44
5533 6397 0.816018 CATAATTGCCCGTACCCGCA 60.816 55.000 0.00 0.00 0.00 5.69
5534 6398 1.512156 CCATAATTGCCCGTACCCGC 61.512 60.000 0.00 0.00 0.00 6.13
5535 6399 0.179040 ACCATAATTGCCCGTACCCG 60.179 55.000 0.00 0.00 0.00 5.28
5536 6400 2.934886 TACCATAATTGCCCGTACCC 57.065 50.000 0.00 0.00 0.00 3.69
5537 6401 2.486592 GCATACCATAATTGCCCGTACC 59.513 50.000 0.00 0.00 0.00 3.34
5538 6402 3.408634 AGCATACCATAATTGCCCGTAC 58.591 45.455 0.00 0.00 37.07 3.67
5539 6403 3.780804 AGCATACCATAATTGCCCGTA 57.219 42.857 0.00 0.00 37.07 4.02
5540 6404 2.622942 CAAGCATACCATAATTGCCCGT 59.377 45.455 0.00 0.00 37.07 5.28
5548 6412 9.104965 GTCAATAACACTACAAGCATACCATAA 57.895 33.333 0.00 0.00 0.00 1.90
5598 6462 2.225727 GGTTTAACAGGAGCGACAAAGG 59.774 50.000 0.00 0.00 0.00 3.11
5610 6474 4.370917 ACATGCTTGCAAAGGTTTAACAG 58.629 39.130 0.00 0.00 46.35 3.16
5644 6508 7.382898 GGGCAAACCTATTTTTAACAGAATGA 58.617 34.615 0.00 0.00 36.21 2.57
5679 6543 1.071471 GGATGCCCCGTATGGACAG 59.929 63.158 1.27 0.00 37.49 3.51
5691 6555 3.319122 GGTCTTTACAATGGATGGATGCC 59.681 47.826 0.00 0.00 0.00 4.40
5721 6585 2.546899 TGGCCTGTGTAACTCACCTAT 58.453 47.619 3.32 0.00 45.61 2.57
5766 6658 1.624813 ACTCGGTCCGTCCCAAAATAA 59.375 47.619 11.88 0.00 0.00 1.40
5767 6659 1.269012 ACTCGGTCCGTCCCAAAATA 58.731 50.000 11.88 0.00 0.00 1.40
5768 6660 1.269012 TACTCGGTCCGTCCCAAAAT 58.731 50.000 11.88 0.00 0.00 1.82
5769 6661 1.269012 ATACTCGGTCCGTCCCAAAA 58.731 50.000 11.88 0.00 0.00 2.44
5781 6673 3.793559 CAGGGGTAGAACAAATACTCGG 58.206 50.000 0.00 0.00 0.00 4.63
5783 6675 4.443621 GAGCAGGGGTAGAACAAATACTC 58.556 47.826 0.00 0.00 0.00 2.59
5823 6715 9.671521 CGAAGAAACTAGTTTTACAACATATCG 57.328 33.333 21.40 14.19 35.05 2.92
5828 6720 7.546667 ACTGTCGAAGAAACTAGTTTTACAACA 59.453 33.333 21.40 18.41 39.69 3.33
5829 6721 7.844653 CACTGTCGAAGAAACTAGTTTTACAAC 59.155 37.037 21.40 15.49 39.69 3.32
5830 6722 7.760794 TCACTGTCGAAGAAACTAGTTTTACAA 59.239 33.333 21.40 5.06 39.69 2.41
5839 6731 5.001237 TGTTGTCACTGTCGAAGAAACTA 57.999 39.130 0.00 0.00 39.69 2.24
5841 6733 4.593597 TTGTTGTCACTGTCGAAGAAAC 57.406 40.909 0.00 0.00 39.69 2.78
5849 6741 4.271291 GGAGAGTTCTTTGTTGTCACTGTC 59.729 45.833 0.00 0.00 0.00 3.51
5867 6759 2.360165 AGCTTTTTGCACAAGTGGAGAG 59.640 45.455 2.00 0.85 45.94 3.20
5874 6766 3.005050 TGGATCAGAGCTTTTTGCACAAG 59.995 43.478 0.00 0.00 45.94 3.16
5889 6781 3.574749 TCTGAGGAGGATCTTGGATCAG 58.425 50.000 9.33 1.34 35.21 2.90
5890 6782 3.695357 TCTGAGGAGGATCTTGGATCA 57.305 47.619 9.33 0.00 33.73 2.92
5891 6783 5.307716 AGAATTCTGAGGAGGATCTTGGATC 59.692 44.000 7.30 0.00 33.73 3.36
5897 6789 4.813809 TGCTAGAATTCTGAGGAGGATCT 58.186 43.478 18.47 0.00 33.73 2.75
5908 6800 6.624423 GCAATCACATGTGTTGCTAGAATTCT 60.624 38.462 34.21 13.56 40.73 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.