Multiple sequence alignment - TraesCS1A01G061500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G061500 chr1A 100.000 9074 0 0 1 9074 42112280 42103207 0.000000e+00 16757.0
1 TraesCS1A01G061500 chr1D 96.541 2602 79 7 1 2601 41994400 41991809 0.000000e+00 4296.0
2 TraesCS1A01G061500 chr1D 91.495 2034 130 14 4890 6882 41990740 41988709 0.000000e+00 2758.0
3 TraesCS1A01G061500 chr1D 91.094 1280 83 20 7695 8958 41987622 41986358 0.000000e+00 1703.0
4 TraesCS1A01G061500 chr1D 90.844 557 48 3 4890 5445 71042834 71043388 0.000000e+00 743.0
5 TraesCS1A01G061500 chr1D 90.698 559 41 7 7145 7696 41988258 41987704 0.000000e+00 734.0
6 TraesCS1A01G061500 chr1D 87.387 333 32 4 4561 4893 41991099 41990777 3.090000e-99 374.0
7 TraesCS1A01G061500 chr1D 84.356 326 24 8 6827 7152 41988714 41988416 2.480000e-75 294.0
8 TraesCS1A01G061500 chr1D 93.878 98 5 1 8947 9044 41985593 41985497 7.340000e-31 147.0
9 TraesCS1A01G061500 chr1D 83.582 134 14 7 3759 3884 2063698 2063831 1.600000e-22 119.0
10 TraesCS1A01G061500 chr1B 90.485 2806 202 32 6295 9074 62410887 62408121 0.000000e+00 3642.0
11 TraesCS1A01G061500 chr1B 90.858 1247 99 6 772 2018 62419838 62418607 0.000000e+00 1657.0
12 TraesCS1A01G061500 chr1B 84.661 1017 129 18 3770 4770 659517967 659516962 0.000000e+00 989.0
13 TraesCS1A01G061500 chr1B 90.860 558 49 2 4890 5446 659516839 659516283 0.000000e+00 747.0
14 TraesCS1A01G061500 chr1B 85.307 701 82 13 5542 6229 62415502 62414810 0.000000e+00 704.0
15 TraesCS1A01G061500 chr1B 85.301 449 59 2 4445 4893 12369419 12369860 2.990000e-124 457.0
16 TraesCS1A01G061500 chr1B 93.789 161 10 0 2096 2256 62418565 62418405 9.100000e-60 243.0
17 TraesCS1A01G061500 chr1B 85.845 219 25 5 2332 2548 62418407 62418193 2.550000e-55 228.0
18 TraesCS1A01G061500 chr7A 93.333 1140 54 5 2600 3725 134483702 134484833 0.000000e+00 1664.0
19 TraesCS1A01G061500 chr7A 91.728 544 44 1 4902 5444 700106812 700106269 0.000000e+00 754.0
20 TraesCS1A01G061500 chr7A 87.797 590 49 12 3151 3725 544569533 544570114 0.000000e+00 669.0
21 TraesCS1A01G061500 chr7A 83.101 574 49 27 3172 3728 543824447 543823905 6.370000e-131 479.0
22 TraesCS1A01G061500 chr7A 90.520 327 27 4 2591 2916 544569117 544569440 6.510000e-116 429.0
23 TraesCS1A01G061500 chr7A 90.196 306 26 3 2602 2903 543827655 543827350 6.600000e-106 396.0
24 TraesCS1A01G061500 chr7A 87.143 140 7 2 3046 3178 543825824 543825689 2.040000e-31 148.0
25 TraesCS1A01G061500 chr7A 93.827 81 4 1 2254 2333 701632340 701632260 4.450000e-23 121.0
26 TraesCS1A01G061500 chr2A 92.738 1143 47 16 2600 3728 54847544 54848664 0.000000e+00 1618.0
27 TraesCS1A01G061500 chr2A 87.706 1155 94 26 2601 3725 656833296 656834432 0.000000e+00 1303.0
28 TraesCS1A01G061500 chr2A 84.646 508 39 24 3242 3734 62135240 62134757 3.840000e-128 470.0
29 TraesCS1A01G061500 chr2A 87.943 282 25 4 2984 3257 62135539 62135259 3.160000e-84 324.0
30 TraesCS1A01G061500 chr3D 88.336 1166 77 24 2597 3728 337752275 337751135 0.000000e+00 1345.0
31 TraesCS1A01G061500 chr3D 87.042 764 48 27 2999 3735 272912664 272911925 0.000000e+00 815.0
32 TraesCS1A01G061500 chr3D 91.741 557 45 1 4890 5445 196945953 196945397 0.000000e+00 773.0
33 TraesCS1A01G061500 chr3D 83.136 759 72 27 2984 3725 593454886 593454167 7.680000e-180 641.0
34 TraesCS1A01G061500 chr5B 87.362 1179 98 29 2591 3737 313116444 313117603 0.000000e+00 1304.0
35 TraesCS1A01G061500 chr5B 90.698 559 50 2 4890 5447 355238342 355237785 0.000000e+00 743.0
36 TraesCS1A01G061500 chr5B 87.500 80 8 1 2259 2336 606015569 606015490 3.490000e-14 91.6
37 TraesCS1A01G061500 chr5B 87.013 77 8 1 2254 2328 606015493 606015569 1.620000e-12 86.1
38 TraesCS1A01G061500 chr5D 85.864 1146 132 23 3765 4893 35987222 35988354 0.000000e+00 1192.0
39 TraesCS1A01G061500 chr5D 90.991 555 44 4 4892 5445 514303618 514303069 0.000000e+00 743.0
40 TraesCS1A01G061500 chr2D 85.092 1147 122 21 3768 4893 82880445 82881563 0.000000e+00 1125.0
41 TraesCS1A01G061500 chr2D 89.386 782 38 21 2969 3725 242336742 242335981 0.000000e+00 942.0
42 TraesCS1A01G061500 chr2D 85.180 749 90 13 4159 4893 18252758 18252017 0.000000e+00 749.0
43 TraesCS1A01G061500 chr2D 91.496 341 20 5 2602 2941 242337063 242336731 2.310000e-125 460.0
44 TraesCS1A01G061500 chr2D 77.604 384 67 15 3770 4146 45501243 45500872 1.980000e-51 215.0
45 TraesCS1A01G061500 chr2D 85.185 189 20 5 3758 3939 18253758 18253571 4.330000e-43 187.0
46 TraesCS1A01G061500 chr2D 92.105 76 5 1 3767 3842 5078958 5078884 1.250000e-18 106.0
47 TraesCS1A01G061500 chr2D 85.417 96 12 2 2246 2339 79088079 79087984 2.090000e-16 99.0
48 TraesCS1A01G061500 chr2D 87.952 83 4 4 3775 3856 133782825 133782902 9.700000e-15 93.5
49 TraesCS1A01G061500 chr2D 85.556 90 7 1 2254 2337 70263795 70263706 1.250000e-13 89.8
50 TraesCS1A01G061500 chr2D 85.057 87 8 2 2252 2333 145889638 145889552 5.840000e-12 84.2
51 TraesCS1A01G061500 chr7B 82.780 1144 149 32 3768 4890 614545901 614547017 0.000000e+00 977.0
52 TraesCS1A01G061500 chr7D 85.013 794 98 13 4106 4893 631063749 631062971 0.000000e+00 787.0
53 TraesCS1A01G061500 chr3A 83.911 808 125 5 3967 4772 94385375 94386179 0.000000e+00 767.0
54 TraesCS1A01G061500 chr6B 84.282 808 102 16 4100 4893 716062178 716062974 0.000000e+00 765.0
55 TraesCS1A01G061500 chr6B 90.925 562 49 2 4890 5450 46620915 46621475 0.000000e+00 754.0
56 TraesCS1A01G061500 chr6B 91.023 557 47 3 4890 5445 41331848 41332402 0.000000e+00 749.0
57 TraesCS1A01G061500 chr6B 80.302 995 180 10 995 1978 17912311 17913300 0.000000e+00 737.0
58 TraesCS1A01G061500 chr6B 78.681 1046 194 23 913 1940 17064027 17062993 0.000000e+00 669.0
59 TraesCS1A01G061500 chr6B 79.116 996 181 21 1001 1978 17986329 17985343 0.000000e+00 662.0
60 TraesCS1A01G061500 chr6A 80.483 994 180 9 995 1978 9377360 9376371 0.000000e+00 749.0
61 TraesCS1A01G061500 chr6A 82.917 521 81 4 995 1508 11042036 11042555 6.420000e-126 462.0
62 TraesCS1A01G061500 chr6A 82.932 457 57 15 3272 3725 535375236 535375674 8.540000e-105 392.0
63 TraesCS1A01G061500 chr3B 80.341 997 176 14 995 1978 42037664 42036675 0.000000e+00 737.0
64 TraesCS1A01G061500 chr3B 83.887 782 101 14 4127 4893 543706956 543706185 0.000000e+00 723.0
65 TraesCS1A01G061500 chr4B 84.005 794 91 17 4100 4893 643301189 643300432 0.000000e+00 730.0
66 TraesCS1A01G061500 chr4B 85.811 444 56 3 4451 4893 586860831 586860394 1.780000e-126 464.0
67 TraesCS1A01G061500 chr4B 85.523 449 58 2 4445 4893 95111191 95110750 6.420000e-126 462.0
68 TraesCS1A01G061500 chrUn 79.958 958 178 10 995 1942 291413537 291414490 0.000000e+00 693.0
69 TraesCS1A01G061500 chrUn 81.988 805 126 14 913 1710 459436736 459435944 0.000000e+00 665.0
70 TraesCS1A01G061500 chrUn 86.905 84 5 5 3775 3856 104131483 104131404 1.250000e-13 89.8
71 TraesCS1A01G061500 chr2B 89.852 542 38 6 2601 3129 733102975 733102438 0.000000e+00 680.0
72 TraesCS1A01G061500 chr2B 83.713 614 41 26 3139 3730 733102378 733101802 8.070000e-145 525.0
73 TraesCS1A01G061500 chr2B 83.495 103 9 4 2233 2334 177587283 177587188 1.250000e-13 89.8
74 TraesCS1A01G061500 chr4A 87.224 407 43 3 4487 4893 625685017 625684620 1.070000e-123 455.0
75 TraesCS1A01G061500 chr6D 82.664 473 43 22 3270 3725 388934653 388935103 5.140000e-102 383.0
76 TraesCS1A01G061500 chr6D 81.517 422 40 12 4473 4893 331829008 331829392 6.840000e-81 313.0
77 TraesCS1A01G061500 chr4D 85.714 84 8 2 2254 2333 12547873 12547956 1.620000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G061500 chr1A 42103207 42112280 9073 True 16757.000000 16757 100.000000 1 9074 1 chr1A.!!$R1 9073
1 TraesCS1A01G061500 chr1D 41985497 41994400 8903 True 1472.285714 4296 90.778429 1 9044 7 chr1D.!!$R1 9043
2 TraesCS1A01G061500 chr1D 71042834 71043388 554 False 743.000000 743 90.844000 4890 5445 1 chr1D.!!$F2 555
3 TraesCS1A01G061500 chr1B 62408121 62419838 11717 True 1294.800000 3642 89.256800 772 9074 5 chr1B.!!$R1 8302
4 TraesCS1A01G061500 chr1B 659516283 659517967 1684 True 868.000000 989 87.760500 3770 5446 2 chr1B.!!$R2 1676
5 TraesCS1A01G061500 chr7A 134483702 134484833 1131 False 1664.000000 1664 93.333000 2600 3725 1 chr7A.!!$F1 1125
6 TraesCS1A01G061500 chr7A 700106269 700106812 543 True 754.000000 754 91.728000 4902 5444 1 chr7A.!!$R1 542
7 TraesCS1A01G061500 chr7A 544569117 544570114 997 False 549.000000 669 89.158500 2591 3725 2 chr7A.!!$F2 1134
8 TraesCS1A01G061500 chr7A 543823905 543827655 3750 True 341.000000 479 86.813333 2602 3728 3 chr7A.!!$R3 1126
9 TraesCS1A01G061500 chr2A 54847544 54848664 1120 False 1618.000000 1618 92.738000 2600 3728 1 chr2A.!!$F1 1128
10 TraesCS1A01G061500 chr2A 656833296 656834432 1136 False 1303.000000 1303 87.706000 2601 3725 1 chr2A.!!$F2 1124
11 TraesCS1A01G061500 chr2A 62134757 62135539 782 True 397.000000 470 86.294500 2984 3734 2 chr2A.!!$R1 750
12 TraesCS1A01G061500 chr3D 337751135 337752275 1140 True 1345.000000 1345 88.336000 2597 3728 1 chr3D.!!$R3 1131
13 TraesCS1A01G061500 chr3D 272911925 272912664 739 True 815.000000 815 87.042000 2999 3735 1 chr3D.!!$R2 736
14 TraesCS1A01G061500 chr3D 196945397 196945953 556 True 773.000000 773 91.741000 4890 5445 1 chr3D.!!$R1 555
15 TraesCS1A01G061500 chr3D 593454167 593454886 719 True 641.000000 641 83.136000 2984 3725 1 chr3D.!!$R4 741
16 TraesCS1A01G061500 chr5B 313116444 313117603 1159 False 1304.000000 1304 87.362000 2591 3737 1 chr5B.!!$F1 1146
17 TraesCS1A01G061500 chr5B 355237785 355238342 557 True 743.000000 743 90.698000 4890 5447 1 chr5B.!!$R1 557
18 TraesCS1A01G061500 chr5D 35987222 35988354 1132 False 1192.000000 1192 85.864000 3765 4893 1 chr5D.!!$F1 1128
19 TraesCS1A01G061500 chr5D 514303069 514303618 549 True 743.000000 743 90.991000 4892 5445 1 chr5D.!!$R1 553
20 TraesCS1A01G061500 chr2D 82880445 82881563 1118 False 1125.000000 1125 85.092000 3768 4893 1 chr2D.!!$F1 1125
21 TraesCS1A01G061500 chr2D 242335981 242337063 1082 True 701.000000 942 90.441000 2602 3725 2 chr2D.!!$R7 1123
22 TraesCS1A01G061500 chr2D 18252017 18253758 1741 True 468.000000 749 85.182500 3758 4893 2 chr2D.!!$R6 1135
23 TraesCS1A01G061500 chr7B 614545901 614547017 1116 False 977.000000 977 82.780000 3768 4890 1 chr7B.!!$F1 1122
24 TraesCS1A01G061500 chr7D 631062971 631063749 778 True 787.000000 787 85.013000 4106 4893 1 chr7D.!!$R1 787
25 TraesCS1A01G061500 chr3A 94385375 94386179 804 False 767.000000 767 83.911000 3967 4772 1 chr3A.!!$F1 805
26 TraesCS1A01G061500 chr6B 716062178 716062974 796 False 765.000000 765 84.282000 4100 4893 1 chr6B.!!$F4 793
27 TraesCS1A01G061500 chr6B 46620915 46621475 560 False 754.000000 754 90.925000 4890 5450 1 chr6B.!!$F3 560
28 TraesCS1A01G061500 chr6B 41331848 41332402 554 False 749.000000 749 91.023000 4890 5445 1 chr6B.!!$F2 555
29 TraesCS1A01G061500 chr6B 17912311 17913300 989 False 737.000000 737 80.302000 995 1978 1 chr6B.!!$F1 983
30 TraesCS1A01G061500 chr6B 17062993 17064027 1034 True 669.000000 669 78.681000 913 1940 1 chr6B.!!$R1 1027
31 TraesCS1A01G061500 chr6B 17985343 17986329 986 True 662.000000 662 79.116000 1001 1978 1 chr6B.!!$R2 977
32 TraesCS1A01G061500 chr6A 9376371 9377360 989 True 749.000000 749 80.483000 995 1978 1 chr6A.!!$R1 983
33 TraesCS1A01G061500 chr6A 11042036 11042555 519 False 462.000000 462 82.917000 995 1508 1 chr6A.!!$F1 513
34 TraesCS1A01G061500 chr3B 42036675 42037664 989 True 737.000000 737 80.341000 995 1978 1 chr3B.!!$R1 983
35 TraesCS1A01G061500 chr3B 543706185 543706956 771 True 723.000000 723 83.887000 4127 4893 1 chr3B.!!$R2 766
36 TraesCS1A01G061500 chr4B 643300432 643301189 757 True 730.000000 730 84.005000 4100 4893 1 chr4B.!!$R3 793
37 TraesCS1A01G061500 chrUn 291413537 291414490 953 False 693.000000 693 79.958000 995 1942 1 chrUn.!!$F1 947
38 TraesCS1A01G061500 chrUn 459435944 459436736 792 True 665.000000 665 81.988000 913 1710 1 chrUn.!!$R2 797
39 TraesCS1A01G061500 chr2B 733101802 733102975 1173 True 602.500000 680 86.782500 2601 3730 2 chr2B.!!$R2 1129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.109272 CCTACTTCACTCGCGAGCAA 60.109 55.0 34.83 25.16 0.00 3.91 F
1601 1617 0.679960 GAGGCCCAGCGTACCAAAAT 60.680 55.0 0.00 0.00 0.00 1.82 F
1765 1781 0.886938 TCAATGTTTCGCCGAGGCAA 60.887 50.0 15.03 5.05 42.06 4.52 F
3035 3203 0.035317 TTCCTGTGTGTGCAGCTAGG 59.965 55.0 0.00 0.00 35.28 3.02 F
3410 6223 0.541863 AGGCTAAATGGGGTCGTCAG 59.458 55.0 0.00 0.00 0.00 3.51 F
4784 8286 0.537188 CACGGTGCAATAGGACTCCT 59.463 55.0 2.31 2.31 36.20 3.69 F
5218 8801 0.914417 ATCCTCGGATTGGGTGGTGT 60.914 55.0 0.00 0.00 0.00 4.16 F
5323 8907 1.060163 AGTGCTAGGGGTGGTGTTGT 61.060 55.0 0.00 0.00 0.00 3.32 F
5369 8957 1.359459 TTGCGTGTGTGCGTGTGTTA 61.359 50.0 0.00 0.00 37.81 2.41 F
7302 17511 0.036577 CATCATGGCTCCTCCGATCC 60.037 60.0 0.00 0.00 37.80 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 1781 1.355720 CACCTTCTTCCCACTTCCCAT 59.644 52.381 0.00 0.0 0.00 4.00 R
3035 3203 0.530650 TCCTTGCTTGATCGATCCGC 60.531 55.000 22.31 22.5 0.00 5.54 R
3762 6601 1.202582 CAGACGAGACGAAGGGATTGT 59.797 52.381 0.00 0.0 0.00 2.71 R
4782 8284 0.179161 CGCGAGACAAGGTCAGTAGG 60.179 60.000 0.00 0.0 34.60 3.18 R
5353 8941 0.110867 CCATAACACACGCACACACG 60.111 55.000 0.00 0.0 39.50 4.49 R
5954 12071 0.316204 TTCGTCTCCTTCGACCCAAC 59.684 55.000 0.00 0.0 37.05 3.77 R
6521 16501 0.616395 TACGATCCAGGTCAAGGCCA 60.616 55.000 5.01 0.0 0.00 5.36 R
7038 17073 0.839946 ATTGCCTAGGATTCACCGCT 59.160 50.000 14.75 0.0 44.74 5.52 R
7334 17546 0.326264 GCCAGACTGACATGGGAAGT 59.674 55.000 3.32 0.0 37.05 3.01 R
8615 18920 0.411058 AAGGCTTTGGCAAGGGAGAT 59.589 50.000 11.55 0.0 40.87 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.684805 AGGAGGCCCTACTTCACTCG 60.685 60.000 0.00 0.00 42.15 4.18
29 30 0.109272 CCTACTTCACTCGCGAGCAA 60.109 55.000 34.83 25.16 0.00 3.91
39 40 2.010817 CGCGAGCAAAACAAGGCAC 61.011 57.895 0.00 0.00 0.00 5.01
44 45 0.751643 AGCAAAACAAGGCACTCGGT 60.752 50.000 0.00 0.00 38.49 4.69
70 71 2.683933 TGCCGGAGAAGGAGACCC 60.684 66.667 5.05 0.00 0.00 4.46
74 75 3.839432 GGAGAAGGAGACCCGCCG 61.839 72.222 0.00 0.00 37.58 6.46
92 93 1.353103 GCCCATTTCGCACATCTCG 59.647 57.895 0.00 0.00 0.00 4.04
126 127 3.630013 AGCCAGCCGAGCAAGACA 61.630 61.111 0.00 0.00 0.00 3.41
177 178 3.120792 CGCATACGTGGTTGCTATACTT 58.879 45.455 15.06 0.00 36.71 2.24
217 218 1.741401 CATCCAAGCTTCACGGCGA 60.741 57.895 16.62 0.00 37.29 5.54
218 219 1.091771 CATCCAAGCTTCACGGCGAT 61.092 55.000 16.62 0.00 37.29 4.58
254 255 2.027745 TGTTGTTGCCTCTCTCATCCTC 60.028 50.000 0.00 0.00 0.00 3.71
273 274 2.806244 CTCGTTCATCGGTTCTTTGGTT 59.194 45.455 0.00 0.00 40.32 3.67
292 293 5.634118 TGGTTGGTTTCTTGAATCAGAGAT 58.366 37.500 0.00 0.00 28.18 2.75
391 392 1.927527 AGCAGGGCCACTCCAGAAT 60.928 57.895 6.18 0.00 36.21 2.40
420 421 4.496336 GGCCTCGCAGATTGGGCT 62.496 66.667 0.00 0.00 43.77 5.19
438 439 2.167662 GCTACTCTCTCCTCTATGGCC 58.832 57.143 0.00 0.00 35.26 5.36
447 448 1.048724 CCTCTATGGCCGAGGGTTGA 61.049 60.000 15.54 0.00 43.47 3.18
455 456 1.157585 GCCGAGGGTTGAGAACTTTC 58.842 55.000 0.00 0.00 0.00 2.62
465 466 4.519147 GTTGAGAACTTTCGAAGCAAGAC 58.481 43.478 0.00 0.00 0.00 3.01
479 480 1.439679 CAAGACAGGAACCGGCTAAC 58.560 55.000 0.00 0.00 0.00 2.34
519 520 3.494336 CTTCAGGGCTGCTTCGCG 61.494 66.667 0.00 0.00 0.00 5.87
579 580 8.867112 TTATTCTTACCTTTCTGTGCTATACG 57.133 34.615 0.00 0.00 0.00 3.06
821 822 7.498900 TGAATCGCTTACACATATTTGGAAGAT 59.501 33.333 16.56 1.19 0.00 2.40
827 828 7.201767 GCTTACACATATTTGGAAGATGAAGCT 60.202 37.037 16.56 0.00 32.38 3.74
1080 1087 7.549615 ACTTAAAAGAGTGGACAACAACTAC 57.450 36.000 0.00 0.00 0.00 2.73
1601 1617 0.679960 GAGGCCCAGCGTACCAAAAT 60.680 55.000 0.00 0.00 0.00 1.82
1765 1781 0.886938 TCAATGTTTCGCCGAGGCAA 60.887 50.000 15.03 5.05 42.06 4.52
1773 1789 2.044946 GCCGAGGCAATGGGAAGT 60.045 61.111 9.58 0.00 41.49 3.01
1981 2000 6.882678 GGGTGAAAGCTCTACAGGTAATTAAA 59.117 38.462 0.00 0.00 0.00 1.52
2085 2104 7.361127 AGATACTATCGACAAACACGGATAAG 58.639 38.462 0.00 0.00 0.00 1.73
2093 2112 5.404366 CGACAAACACGGATAAGAAAGAAGA 59.596 40.000 0.00 0.00 0.00 2.87
2228 2248 7.542824 GGCAAAACACACAAACTTTAGTTTCTA 59.457 33.333 4.93 0.00 45.54 2.10
2278 2298 5.163088 ACTCCCTCTGTTCCAAAATACTTGT 60.163 40.000 0.00 0.00 0.00 3.16
2300 2320 6.774084 TGTCGTGGTTTTAGTTTGAAGTAAC 58.226 36.000 0.00 0.00 0.00 2.50
2307 2327 4.799419 TTAGTTTGAAGTAACACCACGC 57.201 40.909 0.00 0.00 0.00 5.34
2328 2348 3.132824 GCCAAGTATTTTGGAATGGAGGG 59.867 47.826 9.99 0.00 42.06 4.30
2501 2523 5.376625 TGCATTAGAACCTCAGTTTCAGTT 58.623 37.500 0.00 0.00 35.94 3.16
2598 2647 4.883585 TGCACCATGTTTGCCAAAATAAAA 59.116 33.333 12.65 0.00 39.39 1.52
2714 2765 2.884012 TGGTGCCTTATGTGACACTTTG 59.116 45.455 7.20 0.00 33.53 2.77
2772 2826 1.351076 AAGACAATTTTGCCCCTGGG 58.649 50.000 5.50 5.50 38.57 4.45
3035 3203 0.035317 TTCCTGTGTGTGCAGCTAGG 59.965 55.000 0.00 0.00 35.28 3.02
3223 5986 2.362736 ACTCGCGTAGTCTGTATTGGA 58.637 47.619 5.77 0.00 30.33 3.53
3253 6017 1.296392 TGCCACGTATTGCAGCTCT 59.704 52.632 2.80 0.00 32.77 4.09
3403 6216 3.244249 GCTACAGTAGAGGCTAAATGGGG 60.244 52.174 12.15 0.00 0.00 4.96
3410 6223 0.541863 AGGCTAAATGGGGTCGTCAG 59.458 55.000 0.00 0.00 0.00 3.51
3430 6243 6.535150 CGTCAGTGTTCCACTCATTGTATTAT 59.465 38.462 0.00 0.00 43.43 1.28
3645 6482 6.553100 ACATAGGGAACAAAATGAAGTTTGGA 59.447 34.615 7.98 0.00 41.82 3.53
3660 6497 4.492646 AGTTTGGATGTCAAAAAGGGGAT 58.507 39.130 0.00 0.00 45.74 3.85
3748 6587 0.611896 AAAAGGGCGGGAAGTGATGG 60.612 55.000 0.00 0.00 0.00 3.51
3761 6600 5.828328 GGGAAGTGATGGGGAGTAATAAAAG 59.172 44.000 0.00 0.00 0.00 2.27
3762 6601 6.353602 GGGAAGTGATGGGGAGTAATAAAAGA 60.354 42.308 0.00 0.00 0.00 2.52
3766 6605 7.643123 AGTGATGGGGAGTAATAAAAGACAAT 58.357 34.615 0.00 0.00 0.00 2.71
3781 6620 1.473278 GACAATCCCTTCGTCTCGTCT 59.527 52.381 0.00 0.00 0.00 4.18
3956 6806 2.046988 CGTCACAGCATGGAGGCA 60.047 61.111 0.00 0.00 43.62 4.75
3974 6824 2.125552 CGCCATTCTGCAGGACGA 60.126 61.111 15.13 0.00 0.00 4.20
4012 6862 4.405671 GGCAGAGCAGCAGAGGCA 62.406 66.667 0.00 0.00 44.61 4.75
4103 6954 4.933064 GCGTCTCGGCCCAGATCG 62.933 72.222 2.45 10.29 0.00 3.69
4226 7669 2.266055 GAGCTGTCCTGGTTCCGG 59.734 66.667 0.00 0.00 0.00 5.14
4308 7806 4.363990 CTCCTGTGCGCAGTCGGT 62.364 66.667 24.85 0.00 41.02 4.69
4431 7929 3.590574 GTGCCCCTCCCCTTTGGT 61.591 66.667 0.00 0.00 34.77 3.67
4441 7939 2.030562 CCTTTGGTGCCTCGACGT 59.969 61.111 0.00 0.00 0.00 4.34
4595 8093 2.579657 ATGTCCTGGCGTCGGTTCA 61.580 57.895 0.00 0.00 0.00 3.18
4597 8095 1.375523 GTCCTGGCGTCGGTTCATT 60.376 57.895 0.00 0.00 0.00 2.57
4682 8182 4.056805 CTGGCCTTCTCCCAGCTA 57.943 61.111 3.32 0.00 42.98 3.32
4779 8281 2.817834 GCGCACGGTGCAATAGGA 60.818 61.111 30.23 0.00 45.36 2.94
4780 8282 3.089784 CGCACGGTGCAATAGGAC 58.910 61.111 30.23 1.18 45.36 3.85
4781 8283 1.447838 CGCACGGTGCAATAGGACT 60.448 57.895 30.23 0.00 45.36 3.85
4782 8284 1.421410 CGCACGGTGCAATAGGACTC 61.421 60.000 30.23 0.00 45.36 3.36
4783 8285 1.090052 GCACGGTGCAATAGGACTCC 61.090 60.000 27.10 0.00 44.26 3.85
4784 8286 0.537188 CACGGTGCAATAGGACTCCT 59.463 55.000 2.31 2.31 36.20 3.69
4793 8295 3.707102 GCAATAGGACTCCTACTGACCTT 59.293 47.826 16.31 0.00 35.61 3.50
4825 8327 4.329545 GGTGCGGGACCAAGCTCA 62.330 66.667 14.36 0.00 45.34 4.26
4839 8341 2.436646 CTCACCTTGCGCCCGATT 60.437 61.111 4.18 0.00 0.00 3.34
4852 8354 2.202932 CGATTCTGCAGGACGGGG 60.203 66.667 15.13 0.00 0.00 5.73
4915 8497 1.695242 TCTCTTTGGTTGGGTTAGCGA 59.305 47.619 0.00 0.00 0.00 4.93
4948 8530 1.416401 GAGGTGGTGTCAAGGTCTTGA 59.584 52.381 9.13 9.13 46.27 3.02
4959 8541 2.361104 GTCTTGAATGCGGGGGCA 60.361 61.111 0.00 0.00 0.00 5.36
5155 8738 1.741770 CCCTTCTTGAAGGCGTCGG 60.742 63.158 20.71 6.15 38.63 4.79
5218 8801 0.914417 ATCCTCGGATTGGGTGGTGT 60.914 55.000 0.00 0.00 0.00 4.16
5261 8845 3.883744 CTGAAGGCGCCGTCTTGGT 62.884 63.158 36.30 10.23 41.21 3.67
5287 8871 1.665679 CGGTTCGTCATATGCAGCTTT 59.334 47.619 0.00 0.00 0.00 3.51
5302 8886 1.476891 AGCTTTATCTCTTCGCGGTGA 59.523 47.619 6.13 3.83 0.00 4.02
5323 8907 1.060163 AGTGCTAGGGGTGGTGTTGT 61.060 55.000 0.00 0.00 0.00 3.32
5353 8941 1.466167 CGCCTATGTATCATGCCTTGC 59.534 52.381 0.00 0.00 0.00 4.01
5369 8957 1.359459 TTGCGTGTGTGCGTGTGTTA 61.359 50.000 0.00 0.00 37.81 2.41
5438 9026 4.481368 AAAGTGGGGTGAAAACCTTTTC 57.519 40.909 3.90 3.90 45.13 2.29
5450 9038 7.303261 GTGAAAACCTTTTCCGGTAATAGAAG 58.697 38.462 0.00 0.00 44.48 2.85
5473 9061 3.901844 GGCTGGTATAGAAGGGTACATGA 59.098 47.826 0.00 0.00 0.00 3.07
5499 9087 4.457603 CCGTAGTTTTGTCATTCCCATTCA 59.542 41.667 0.00 0.00 0.00 2.57
5501 9089 6.029607 CGTAGTTTTGTCATTCCCATTCATG 58.970 40.000 0.00 0.00 0.00 3.07
5502 9090 6.349280 CGTAGTTTTGTCATTCCCATTCATGT 60.349 38.462 0.00 0.00 0.00 3.21
5503 9091 5.786311 AGTTTTGTCATTCCCATTCATGTG 58.214 37.500 0.00 0.00 0.00 3.21
5504 9092 5.305128 AGTTTTGTCATTCCCATTCATGTGT 59.695 36.000 0.00 0.00 0.00 3.72
5505 9093 4.787260 TTGTCATTCCCATTCATGTGTG 57.213 40.909 0.00 0.00 0.00 3.82
5506 9094 2.492881 TGTCATTCCCATTCATGTGTGC 59.507 45.455 0.00 0.00 0.00 4.57
5507 9095 2.756760 GTCATTCCCATTCATGTGTGCT 59.243 45.455 0.00 0.00 0.00 4.40
5508 9096 3.947196 GTCATTCCCATTCATGTGTGCTA 59.053 43.478 0.00 0.00 0.00 3.49
5510 9098 4.641541 TCATTCCCATTCATGTGTGCTAAG 59.358 41.667 0.00 0.00 0.00 2.18
5570 11683 9.668497 AAGTAATGAAACTTTACCTCCTCATAC 57.332 33.333 0.00 0.00 31.72 2.39
5637 11750 8.773033 ATAATTGGCACATAAGAAGAGGAAAT 57.227 30.769 0.00 0.00 39.30 2.17
5724 11837 4.023536 GGTGCTCTAATAGGAGAGAGTTCG 60.024 50.000 4.63 0.00 45.03 3.95
5778 11891 1.401905 GGACCGGAATCTGCATTCAAC 59.598 52.381 9.46 0.00 40.41 3.18
5954 12071 1.726791 CGTTGTCCAACTTCTCGGATG 59.273 52.381 8.40 0.00 39.08 3.51
6045 12162 1.542915 CACAGCAAGGGTGAGGAATTG 59.457 52.381 2.05 0.00 38.54 2.32
6090 12207 1.981254 AAACACGCAATATGCAGCAC 58.019 45.000 0.00 0.00 45.36 4.40
6135 12252 9.353999 GGAAAAATAGTATGTCAATTCAACACC 57.646 33.333 0.00 0.00 0.00 4.16
6181 12305 4.991687 CACTCAAAAGAACTCACCCTCTAC 59.008 45.833 0.00 0.00 0.00 2.59
6201 12326 9.394477 CCTCTACGAAACCTTCAATTTTAAAAG 57.606 33.333 6.79 0.00 0.00 2.27
6220 12345 5.864418 AAAGACTTAGTGTGGTGTGTCTA 57.136 39.130 0.00 0.00 34.23 2.59
6246 12423 3.506067 TGTGATACGAGTGACATGTCTGT 59.494 43.478 25.55 19.23 38.67 3.41
6288 12465 3.547746 GTCACAGGTAAAAAGGGTGTCA 58.452 45.455 0.00 0.00 0.00 3.58
6480 16460 1.555075 ACGCTGGTATCTCCAATGTGT 59.445 47.619 0.00 0.00 46.59 3.72
6498 16478 2.942376 GTGTTGGTCAGTGACAACATGA 59.058 45.455 28.13 14.03 36.66 3.07
6503 16483 3.895041 TGGTCAGTGACAACATGAGTAGA 59.105 43.478 24.20 0.00 33.68 2.59
6531 16511 3.421844 AGTTTTAGATGTGGCCTTGACC 58.578 45.455 3.32 0.00 0.00 4.02
6532 16512 3.074538 AGTTTTAGATGTGGCCTTGACCT 59.925 43.478 3.32 0.00 0.00 3.85
6552 16532 3.593096 CTGGATCGTATGGATGGTCATG 58.407 50.000 0.00 0.00 34.82 3.07
6561 16541 3.192541 TGGATGGTCATGGTTATCACG 57.807 47.619 0.00 0.00 0.00 4.35
6563 16543 3.181466 TGGATGGTCATGGTTATCACGAG 60.181 47.826 0.00 0.00 0.00 4.18
6582 16562 4.039245 ACGAGGATGATTACCATGTCGATT 59.961 41.667 11.16 0.00 39.16 3.34
6748 16728 1.889573 GCGAGAAGGGCCTATGCAC 60.890 63.158 6.41 0.00 43.06 4.57
6788 16768 5.010282 CCCTTTATATGGGTATGCCTTGAC 58.990 45.833 0.00 0.00 39.82 3.18
6831 16815 4.398319 AGGTGCATTAGCTAAACTGTTGT 58.602 39.130 10.85 0.00 42.74 3.32
6871 16855 7.610692 CAGGCATACATCAATTCTATGGAAGAT 59.389 37.037 0.00 0.00 34.70 2.40
6884 16919 8.722480 TTCTATGGAAGATAATGTGTTGACAG 57.278 34.615 0.00 0.00 32.26 3.51
6893 16928 7.865707 AGATAATGTGTTGACAGAAACAAGTC 58.134 34.615 0.00 0.00 41.52 3.01
6951 16986 2.505819 GGCTTGAAGGAGATTACCCTCA 59.494 50.000 0.00 0.00 34.94 3.86
6974 17009 5.645929 CACAATGCTGTTACCAAGGTATGTA 59.354 40.000 0.00 0.00 31.64 2.29
6975 17010 6.318648 CACAATGCTGTTACCAAGGTATGTAT 59.681 38.462 0.00 0.00 31.64 2.29
6976 17011 6.889722 ACAATGCTGTTACCAAGGTATGTATT 59.110 34.615 0.00 3.22 28.57 1.89
6977 17012 7.396055 ACAATGCTGTTACCAAGGTATGTATTT 59.604 33.333 0.00 0.00 28.57 1.40
6978 17013 7.954666 ATGCTGTTACCAAGGTATGTATTTT 57.045 32.000 0.00 0.00 0.00 1.82
6979 17014 7.768807 TGCTGTTACCAAGGTATGTATTTTT 57.231 32.000 0.00 0.00 0.00 1.94
7015 17050 8.627403 CAATGTATGCATTTTATCCTGAACTCT 58.373 33.333 3.54 0.00 42.91 3.24
7038 17073 8.121305 TCTACCATGTTTAACCGAGTAAACTA 57.879 34.615 16.75 8.11 42.17 2.24
7063 17098 0.819259 GAATCCTAGGCAATGGCGCA 60.819 55.000 10.83 0.00 42.47 6.09
7079 17114 2.478539 GGCGCAAGGAGATGTCATTTTC 60.479 50.000 10.83 0.00 38.28 2.29
7080 17115 2.162208 GCGCAAGGAGATGTCATTTTCA 59.838 45.455 0.30 0.00 38.28 2.69
7086 17121 3.191371 AGGAGATGTCATTTTCAAACCGC 59.809 43.478 0.00 0.00 0.00 5.68
7114 17149 9.754382 GTAGTCTATTCCACCAAATAAACGATA 57.246 33.333 0.00 0.00 0.00 2.92
7161 17361 4.901868 AGTTAATTCAACGTTCTAGCCCA 58.098 39.130 0.00 0.00 42.35 5.36
7168 17368 4.706035 TCAACGTTCTAGCCCAAAGTTTA 58.294 39.130 0.00 0.00 0.00 2.01
7227 17427 4.522114 ACCCCCAAGTTTCAAATTTGTTG 58.478 39.130 17.47 13.63 0.00 3.33
7247 17455 1.078848 CCACCTGCGAAGGGAAGAG 60.079 63.158 15.83 0.00 0.00 2.85
7269 17477 0.691078 AGCACCCCACACGATCCTAT 60.691 55.000 0.00 0.00 0.00 2.57
7302 17511 0.036577 CATCATGGCTCCTCCGATCC 60.037 60.000 0.00 0.00 37.80 3.36
7313 17522 2.359107 CCGATCCCATCATGGCCG 60.359 66.667 0.00 1.16 35.79 6.13
7480 17692 9.942526 AAAATTGAGGATAAATCTTCTGGGTAT 57.057 29.630 4.05 0.00 34.37 2.73
7481 17693 8.930846 AATTGAGGATAAATCTTCTGGGTATG 57.069 34.615 4.05 0.00 34.37 2.39
7483 17695 7.690454 TGAGGATAAATCTTCTGGGTATGAA 57.310 36.000 4.05 0.00 34.37 2.57
7498 17710 2.981859 ATGAAGATAAACCCGCTCGT 57.018 45.000 0.00 0.00 0.00 4.18
7529 17741 2.306847 TCCAGTGAGGCAAAGAAAACC 58.693 47.619 0.00 0.00 37.29 3.27
7532 17744 1.029681 GTGAGGCAAAGAAAACCGGT 58.970 50.000 0.00 0.00 0.00 5.28
7535 17747 3.254903 GTGAGGCAAAGAAAACCGGTAAT 59.745 43.478 8.00 0.00 0.00 1.89
7580 17792 4.082571 AGGAAGCAACGAAAATCAATCCAG 60.083 41.667 0.00 0.00 0.00 3.86
7595 17807 9.479549 AAATCAATCCAGGTAACATGTTAAGAT 57.520 29.630 19.63 15.27 41.41 2.40
7600 17812 7.437713 TCCAGGTAACATGTTAAGATCTGAT 57.562 36.000 25.02 0.00 41.41 2.90
7668 17881 3.201708 AGGAAGCCTATTCATCAGCAACT 59.798 43.478 0.00 0.00 28.47 3.16
7711 18007 7.637709 TGATTAATAGCGTACAGTGCATTAG 57.362 36.000 0.00 0.00 33.85 1.73
7733 18029 2.031120 CCTTGAAAGCAACCTTGACCA 58.969 47.619 0.00 0.00 0.00 4.02
7738 18034 0.468029 AAGCAACCTTGACCACCCTG 60.468 55.000 0.00 0.00 0.00 4.45
7776 18072 2.023673 CTTTGTGAGTTTCACCAGCCA 58.976 47.619 6.74 0.00 46.40 4.75
7870 18166 3.572642 AGGGGGTAAAAAGGTGAAACTG 58.427 45.455 0.00 0.00 36.74 3.16
7879 18175 6.435430 AAAAAGGTGAAACTGATTTTTGGC 57.565 33.333 0.00 0.00 36.42 4.52
7890 18186 8.907222 AAACTGATTTTTGGCATAATCTTTGT 57.093 26.923 18.07 13.09 33.08 2.83
7900 18196 5.183713 TGGCATAATCTTTGTGTTCTTGAGG 59.816 40.000 0.00 0.00 0.00 3.86
7933 18229 4.180057 CAAGTGACTGCTCTCCTGATTAC 58.820 47.826 0.00 0.00 0.00 1.89
7935 18231 4.093011 AGTGACTGCTCTCCTGATTACTT 58.907 43.478 0.00 0.00 0.00 2.24
7938 18234 4.774726 TGACTGCTCTCCTGATTACTTTCT 59.225 41.667 0.00 0.00 0.00 2.52
7940 18236 6.120507 ACTGCTCTCCTGATTACTTTCTTT 57.879 37.500 0.00 0.00 0.00 2.52
8068 18364 0.603707 CGAGCCATGTGACTTGGTGT 60.604 55.000 17.44 6.77 36.57 4.16
8302 18599 2.106566 TGTTTGCACTGGATTTGGTGT 58.893 42.857 0.00 0.00 36.03 4.16
8341 18643 3.623703 TGCTGTCCGTACCTATCTGTAA 58.376 45.455 0.00 0.00 0.00 2.41
8364 18666 2.286872 CTAACTGCTTCTCCTGCCATG 58.713 52.381 0.00 0.00 0.00 3.66
8373 18675 0.531532 CTCCTGCCATGTCGATCCAC 60.532 60.000 0.00 0.00 0.00 4.02
8402 18707 6.884832 TGAAGTTCAGAAGGTCTTCAGTTTA 58.115 36.000 12.54 0.00 40.46 2.01
8417 18722 7.394641 GTCTTCAGTTTATGAGAAGGGGAAATT 59.605 37.037 0.00 0.00 39.68 1.82
8425 18730 4.655963 TGAGAAGGGGAAATTGTTCTCTG 58.344 43.478 11.18 0.00 43.55 3.35
8433 18738 0.036732 AATTGTTCTCTGGCGCCTGA 59.963 50.000 30.96 30.96 0.00 3.86
8450 18755 3.169099 CCTGAAGTCCCGGATGAGATAT 58.831 50.000 0.73 0.00 0.00 1.63
8453 18758 5.215252 TGAAGTCCCGGATGAGATATTTC 57.785 43.478 0.73 0.00 0.00 2.17
8518 18823 7.781693 AGATTCACAGGTATAATGCTTTGGATT 59.218 33.333 0.00 0.00 0.00 3.01
8578 18883 8.367660 ACTAAGAGTTACCATGAAATCTCTCA 57.632 34.615 0.00 0.00 32.82 3.27
8579 18884 8.986991 ACTAAGAGTTACCATGAAATCTCTCAT 58.013 33.333 0.00 0.00 32.82 2.90
8596 18901 7.969536 TCTCTCATATAAATAGCAAACAGGC 57.030 36.000 0.00 0.00 0.00 4.85
8615 18920 2.632377 GCGATCACTCAAAATCTGGGA 58.368 47.619 0.00 0.00 0.00 4.37
8638 18943 1.508088 CCTTGCCAAAGCCTTAGCG 59.492 57.895 0.00 0.00 46.67 4.26
8860 19171 6.820335 AGCTAGTCAAGACATATGCATACAA 58.180 36.000 8.99 0.00 0.00 2.41
8961 20047 4.870123 TTGCAATTACACCAAAGATGCT 57.130 36.364 0.00 0.00 33.66 3.79
8973 20059 6.599638 ACACCAAAGATGCTAAGGAGAATTAC 59.400 38.462 0.00 0.00 0.00 1.89
9036 20122 0.555769 TGGAAAACAAGCTGGGTCCT 59.444 50.000 8.68 0.00 0.00 3.85
9071 20158 7.064490 GGTTAATTATTCATTTGTTGCAGGGTG 59.936 37.037 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.661483 GAGTGCCTTGTTTTGCTCGC 60.661 55.000 0.00 0.00 0.00 5.03
29 30 2.404083 CACACCGAGTGCCTTGTTT 58.596 52.632 4.23 0.00 42.15 2.83
74 75 1.353103 CGAGATGTGCGAAATGGGC 59.647 57.895 0.00 0.00 0.00 5.36
78 79 0.097674 GCAAGCGAGATGTGCGAAAT 59.902 50.000 0.00 0.00 37.44 2.17
92 93 1.311651 GCTGGAGGAGGAAAGCAAGC 61.312 60.000 0.00 0.00 35.69 4.01
126 127 3.688991 GCTAGGAGCTAGTCTGGTACCTT 60.689 52.174 14.36 0.00 38.45 3.50
159 160 5.593679 AGACAAGTATAGCAACCACGTAT 57.406 39.130 0.00 0.00 0.00 3.06
160 161 5.395682 AAGACAAGTATAGCAACCACGTA 57.604 39.130 0.00 0.00 0.00 3.57
177 178 5.157395 TGGATGGATCATGGATCTAAGACA 58.843 41.667 6.22 0.00 38.91 3.41
254 255 2.350388 CCAACCAAAGAACCGATGAACG 60.350 50.000 0.00 0.00 42.18 3.95
273 274 5.494724 CTCCATCTCTGATTCAAGAAACCA 58.505 41.667 3.69 0.00 0.00 3.67
292 293 5.188434 CAGAGCAATTTCATTCTACCTCCA 58.812 41.667 0.00 0.00 0.00 3.86
375 376 1.928868 AAAATTCTGGAGTGGCCCTG 58.071 50.000 0.00 0.00 34.97 4.45
376 377 2.702270 AAAAATTCTGGAGTGGCCCT 57.298 45.000 0.00 0.00 34.97 5.19
400 401 1.821332 CCCAATCTGCGAGGCCTTC 60.821 63.158 6.77 2.26 0.00 3.46
404 405 1.889573 GTAGCCCAATCTGCGAGGC 60.890 63.158 0.00 0.00 46.13 4.70
420 421 2.039216 CTCGGCCATAGAGGAGAGAGTA 59.961 54.545 2.24 0.00 42.65 2.59
438 439 2.433868 TCGAAAGTTCTCAACCCTCG 57.566 50.000 0.00 2.74 37.34 4.63
447 448 3.134458 CCTGTCTTGCTTCGAAAGTTCT 58.866 45.455 0.00 0.00 0.00 3.01
455 456 1.291877 CCGGTTCCTGTCTTGCTTCG 61.292 60.000 0.00 0.00 0.00 3.79
465 466 1.740296 CCACGTTAGCCGGTTCCTG 60.740 63.158 1.90 0.00 42.24 3.86
556 557 6.875076 ACGTATAGCACAGAAAGGTAAGAAT 58.125 36.000 0.00 0.00 0.00 2.40
579 580 5.419760 ACAGAAAAAGCTAAACCGAAGAC 57.580 39.130 0.00 0.00 0.00 3.01
821 822 5.709631 TCACTGGCATTACAAAATAGCTTCA 59.290 36.000 0.00 0.00 0.00 3.02
827 828 4.157656 GGCTGTCACTGGCATTACAAAATA 59.842 41.667 3.10 0.00 0.00 1.40
895 896 8.759641 CAGTGTCCTTGAGATTAAAATCTATCG 58.240 37.037 5.22 0.00 45.39 2.92
1080 1087 1.939934 TCAGTGAAAGACCGCAGTTTG 59.060 47.619 0.00 0.00 0.00 2.93
1601 1617 7.710676 ACATAACCTATGCAACCAATAACAA 57.289 32.000 0.00 0.00 39.79 2.83
1765 1781 1.355720 CACCTTCTTCCCACTTCCCAT 59.644 52.381 0.00 0.00 0.00 4.00
1773 1789 2.104792 CAGTTGTCTCACCTTCTTCCCA 59.895 50.000 0.00 0.00 0.00 4.37
1981 2000 6.594159 ACTTTGAAGTATAGCAGCGTACATTT 59.406 34.615 11.93 1.22 37.52 2.32
2077 2096 8.041323 ACAACATATGTCTTCTTTCTTATCCGT 58.959 33.333 9.23 0.00 37.96 4.69
2085 2104 6.316390 CCACCCTACAACATATGTCTTCTTTC 59.684 42.308 9.23 0.00 42.70 2.62
2093 2112 3.435026 GCATCCCACCCTACAACATATGT 60.435 47.826 1.41 1.41 46.36 2.29
2278 2298 6.183360 GGTGTTACTTCAAACTAAAACCACGA 60.183 38.462 0.00 0.00 0.00 4.35
2300 2320 1.883275 TCCAAAATACTTGGCGTGGTG 59.117 47.619 0.00 0.00 39.38 4.17
2307 2327 4.609301 TCCCTCCATTCCAAAATACTTGG 58.391 43.478 0.00 0.00 40.87 3.61
2480 2502 7.496529 TTGAACTGAAACTGAGGTTCTAATG 57.503 36.000 11.99 2.23 38.86 1.90
2501 2523 3.202906 CCTTCAAACTCCACGTCTTTGA 58.797 45.455 0.00 0.00 33.17 2.69
2694 2745 3.146066 TCAAAGTGTCACATAAGGCACC 58.854 45.455 5.62 0.00 32.75 5.01
2772 2826 9.930693 CTACCCTTTTCTAATGACATACTATCC 57.069 37.037 0.00 0.00 0.00 2.59
2944 3112 0.596082 GCATTTACCACACTTGCCGT 59.404 50.000 0.00 0.00 0.00 5.68
2961 3129 6.146601 TCTTTGTGTCAATTTGAGATTGCA 57.853 33.333 0.00 0.00 0.00 4.08
3035 3203 0.530650 TCCTTGCTTGATCGATCCGC 60.531 55.000 22.31 22.50 0.00 5.54
3223 5986 2.118404 CGTGGCAGGTTGTGTTGGT 61.118 57.895 0.00 0.00 0.00 3.67
3253 6017 2.381752 TCGATTGGCTCTCAGGGATA 57.618 50.000 0.00 0.00 0.00 2.59
3552 6389 7.503566 ACCTAAAAAGACTGTTTTACCCCTAAC 59.496 37.037 0.00 0.00 32.95 2.34
3645 6482 9.639563 AATTTTGTTTTATCCCCTTTTTGACAT 57.360 25.926 0.00 0.00 0.00 3.06
3660 6497 6.319911 CCTTTTTGGCCCAGAATTTTGTTTTA 59.680 34.615 0.00 0.00 0.00 1.52
3748 6587 6.260271 CGAAGGGATTGTCTTTTATTACTCCC 59.740 42.308 0.00 0.00 41.20 4.30
3761 6600 1.473278 AGACGAGACGAAGGGATTGTC 59.527 52.381 0.00 0.00 42.05 3.18
3762 6601 1.202582 CAGACGAGACGAAGGGATTGT 59.797 52.381 0.00 0.00 0.00 2.71
3766 6605 1.303398 AGCAGACGAGACGAAGGGA 60.303 57.895 0.00 0.00 0.00 4.20
3941 6791 2.046988 CGTGCCTCCATGCTGTGA 60.047 61.111 0.00 0.00 0.00 3.58
3956 6806 2.434884 CGTCCTGCAGAATGGCGT 60.435 61.111 17.39 0.00 35.86 5.68
3961 6811 1.079819 CCACGTCGTCCTGCAGAAT 60.080 57.895 17.39 0.00 0.00 2.40
4000 6850 2.590645 CAGGATGCCTCTGCTGCT 59.409 61.111 0.00 0.00 38.71 4.24
4006 6856 2.988839 GCCAACCCAGGATGCCTCT 61.989 63.158 0.00 0.00 31.97 3.69
4030 6880 4.749310 CTTGACGAGCAGCCGCCT 62.749 66.667 3.49 0.00 39.83 5.52
4194 7637 4.521062 CTCCCGAAGCGGCCAGAG 62.521 72.222 2.24 0.00 46.86 3.35
4415 7913 3.589542 CACCAAAGGGGAGGGGCA 61.590 66.667 0.00 0.00 41.15 5.36
4417 7915 4.382541 GGCACCAAAGGGGAGGGG 62.383 72.222 0.00 0.00 41.15 4.79
4431 7929 4.293648 CACCCACACGTCGAGGCA 62.294 66.667 4.75 0.00 0.00 4.75
4467 7965 4.161295 CCCGCCGAGCTCCAATCA 62.161 66.667 8.47 0.00 0.00 2.57
4578 8076 2.107041 AATGAACCGACGCCAGGACA 62.107 55.000 0.00 0.00 0.00 4.02
4595 8093 1.602165 CGATACAAGCCGCCTACGAAT 60.602 52.381 0.00 0.00 43.93 3.34
4597 8095 1.357690 CGATACAAGCCGCCTACGA 59.642 57.895 0.00 0.00 43.93 3.43
4638 8138 1.138036 CGAACATAGCGACCGGACA 59.862 57.895 9.46 0.00 0.00 4.02
4682 8182 0.388134 CGAGACAAACGATGGACCGT 60.388 55.000 0.00 0.00 45.64 4.83
4708 8210 3.260483 GAGCTCGGACATGCGCAG 61.260 66.667 18.32 10.85 0.00 5.18
4736 8238 2.662596 CTTAGTCCAGCGGCACCA 59.337 61.111 1.45 0.00 0.00 4.17
4745 8247 1.801332 GCGAGACGAGCTTAGTCCA 59.199 57.895 16.50 0.00 39.31 4.02
4779 8281 2.438411 CGAGACAAGGTCAGTAGGAGT 58.562 52.381 0.00 0.00 34.60 3.85
4780 8282 1.133407 GCGAGACAAGGTCAGTAGGAG 59.867 57.143 0.00 0.00 34.60 3.69
4781 8283 1.174783 GCGAGACAAGGTCAGTAGGA 58.825 55.000 0.00 0.00 34.60 2.94
4782 8284 0.179161 CGCGAGACAAGGTCAGTAGG 60.179 60.000 0.00 0.00 34.60 3.18
4783 8285 0.798771 GCGCGAGACAAGGTCAGTAG 60.799 60.000 12.10 0.00 34.60 2.57
4784 8286 1.211969 GCGCGAGACAAGGTCAGTA 59.788 57.895 12.10 0.00 34.60 2.74
4825 8327 2.436646 CAGAATCGGGCGCAAGGT 60.437 61.111 10.83 0.00 38.28 3.50
4852 8354 4.864334 CCACCTGGCCTCCATCGC 62.864 72.222 3.32 0.00 30.82 4.58
4915 8497 4.640690 ACCTCACCCGAGCCCTGT 62.641 66.667 0.00 0.00 38.00 4.00
5123 8706 1.133915 AGAAGGGAACGAGTTTTGCCA 60.134 47.619 0.00 0.00 39.40 4.92
5261 8845 0.461163 CATATGACGAACCGTGGGCA 60.461 55.000 0.00 0.00 41.37 5.36
5287 8871 2.031069 GCACTATCACCGCGAAGAGATA 60.031 50.000 8.23 8.51 0.00 1.98
5302 8886 1.559682 CAACACCACCCCTAGCACTAT 59.440 52.381 0.00 0.00 0.00 2.12
5353 8941 0.110867 CCATAACACACGCACACACG 60.111 55.000 0.00 0.00 39.50 4.49
5369 8957 1.598407 TACAAACGCACGCCACCAT 60.598 52.632 0.00 0.00 0.00 3.55
5421 9009 1.404843 CGGAAAAGGTTTTCACCCCA 58.595 50.000 15.31 0.00 46.34 4.96
5438 9026 1.129058 ACCAGCCCTTCTATTACCGG 58.871 55.000 0.00 0.00 0.00 5.28
5450 9038 2.686119 TGTACCCTTCTATACCAGCCC 58.314 52.381 0.00 0.00 0.00 5.19
5473 9061 3.143728 GGGAATGACAAAACTACGGTGT 58.856 45.455 0.00 0.00 0.00 4.16
5504 9092 5.063438 CGCTTAGAGTAAATTGTGCTTAGCA 59.937 40.000 1.39 1.39 35.60 3.49
5505 9093 5.063564 ACGCTTAGAGTAAATTGTGCTTAGC 59.936 40.000 0.00 0.00 0.00 3.09
5506 9094 6.090898 ACACGCTTAGAGTAAATTGTGCTTAG 59.909 38.462 0.00 0.00 0.00 2.18
5507 9095 5.929992 ACACGCTTAGAGTAAATTGTGCTTA 59.070 36.000 0.00 0.00 0.00 3.09
5508 9096 4.755123 ACACGCTTAGAGTAAATTGTGCTT 59.245 37.500 0.00 0.00 0.00 3.91
5510 9098 4.389077 AGACACGCTTAGAGTAAATTGTGC 59.611 41.667 0.00 0.00 0.00 4.57
5570 11683 7.039270 GGGGCCTTAAATAAACAACAGTATTG 58.961 38.462 0.84 0.00 0.00 1.90
5637 11750 4.568072 AATAGTTGGTACATCCTGTGCA 57.432 40.909 0.00 0.00 39.30 4.57
5724 11837 3.715628 TTGAAGAAAACTCTGCCTTGC 57.284 42.857 0.00 0.00 0.00 4.01
5778 11891 8.574737 ACCTTCAAATCAATTTCTTGAGAAGAG 58.425 33.333 13.24 8.57 44.32 2.85
5954 12071 0.316204 TTCGTCTCCTTCGACCCAAC 59.684 55.000 0.00 0.00 37.05 3.77
5999 12116 2.444004 ATCATGCAAGGTGCCACCCA 62.444 55.000 11.06 1.46 44.23 4.51
6058 12175 9.936108 CATATTGCGTGTTTTTATAACAAACTG 57.064 29.630 16.86 12.83 35.50 3.16
6090 12207 8.956533 TTTTTCCCTTCAATAAAAGAAAGGTG 57.043 30.769 0.00 0.00 30.35 4.00
6201 12326 4.850347 ACTAGACACACCACACTAAGTC 57.150 45.455 0.00 0.00 0.00 3.01
6209 12334 5.065602 TCGTATCACATACTAGACACACCAC 59.934 44.000 0.00 0.00 33.59 4.16
6220 12345 5.590663 AGACATGTCACTCGTATCACATACT 59.409 40.000 27.02 0.00 33.59 2.12
6246 12423 6.984474 GTGACCATAAACCAGAAGAATATCGA 59.016 38.462 0.00 0.00 0.00 3.59
6288 12465 2.234296 CCCTTGACTTGGCTCCCCT 61.234 63.158 0.00 0.00 0.00 4.79
6480 16460 3.558931 ACTCATGTTGTCACTGACCAA 57.441 42.857 6.72 0.00 0.00 3.67
6498 16478 7.928706 GCCACATCTAAAACTATGACATCTACT 59.071 37.037 0.00 0.00 0.00 2.57
6503 16483 6.006275 AGGCCACATCTAAAACTATGACAT 57.994 37.500 5.01 0.00 0.00 3.06
6521 16501 0.616395 TACGATCCAGGTCAAGGCCA 60.616 55.000 5.01 0.00 0.00 5.36
6531 16511 3.593096 CATGACCATCCATACGATCCAG 58.407 50.000 0.00 0.00 0.00 3.86
6532 16512 2.302733 CCATGACCATCCATACGATCCA 59.697 50.000 0.00 0.00 0.00 3.41
6552 16532 5.209818 TGGTAATCATCCTCGTGATAACC 57.790 43.478 0.00 0.00 37.85 2.85
6561 16541 9.823647 ATATAAATCGACATGGTAATCATCCTC 57.176 33.333 0.00 0.00 32.92 3.71
6582 16562 5.128663 TGCACTGTCCAGTAGCAGAATATAA 59.871 40.000 15.65 0.00 40.20 0.98
6588 16568 1.047801 TTGCACTGTCCAGTAGCAGA 58.952 50.000 17.57 10.65 42.11 4.26
6748 16728 1.203050 AGGGGTTCTTGTCACAATGGG 60.203 52.381 0.00 0.00 0.00 4.00
6788 16768 8.285394 GCACCTTATCAAGACATTATACACATG 58.715 37.037 0.00 0.00 0.00 3.21
6831 16815 1.689984 TGCCTGTGCATCAAAGTCAA 58.310 45.000 0.00 0.00 44.23 3.18
6871 16855 7.624360 AAGACTTGTTTCTGTCAACACATTA 57.376 32.000 0.00 0.00 36.36 1.90
6880 16915 7.954788 ATCTTCACTAAGACTTGTTTCTGTC 57.045 36.000 0.00 0.00 44.40 3.51
6884 16919 8.713271 CACCTTATCTTCACTAAGACTTGTTTC 58.287 37.037 0.00 0.00 44.40 2.78
6893 16928 3.553511 CGCTGCACCTTATCTTCACTAAG 59.446 47.826 0.00 0.00 0.00 2.18
6977 17012 4.678256 TGCATACATTGGTCCCCTAAAAA 58.322 39.130 0.00 0.00 0.00 1.94
6978 17013 4.323569 TGCATACATTGGTCCCCTAAAA 57.676 40.909 0.00 0.00 0.00 1.52
6979 17014 4.534647 ATGCATACATTGGTCCCCTAAA 57.465 40.909 0.00 0.00 30.07 1.85
6980 17015 4.534647 AATGCATACATTGGTCCCCTAA 57.465 40.909 0.00 0.00 44.90 2.69
6981 17016 4.534647 AAATGCATACATTGGTCCCCTA 57.465 40.909 0.00 0.00 45.90 3.53
6982 17017 3.403228 AAATGCATACATTGGTCCCCT 57.597 42.857 0.00 0.00 45.90 4.79
6983 17018 5.279456 GGATAAAATGCATACATTGGTCCCC 60.279 44.000 0.00 0.00 45.90 4.81
6984 17019 5.539955 AGGATAAAATGCATACATTGGTCCC 59.460 40.000 0.00 4.12 45.90 4.46
6985 17020 6.265196 TCAGGATAAAATGCATACATTGGTCC 59.735 38.462 0.00 8.37 45.90 4.46
6986 17021 7.275888 TCAGGATAAAATGCATACATTGGTC 57.724 36.000 0.00 0.05 45.90 4.02
6987 17022 7.342799 AGTTCAGGATAAAATGCATACATTGGT 59.657 33.333 0.00 0.00 45.90 3.67
6988 17023 7.719483 AGTTCAGGATAAAATGCATACATTGG 58.281 34.615 0.00 0.00 45.90 3.16
6989 17024 8.627403 AGAGTTCAGGATAAAATGCATACATTG 58.373 33.333 0.00 0.00 45.90 2.82
6991 17026 9.277783 GTAGAGTTCAGGATAAAATGCATACAT 57.722 33.333 0.00 0.00 38.49 2.29
6992 17027 7.715249 GGTAGAGTTCAGGATAAAATGCATACA 59.285 37.037 0.00 0.00 0.00 2.29
6993 17028 7.715249 TGGTAGAGTTCAGGATAAAATGCATAC 59.285 37.037 0.00 0.00 0.00 2.39
6994 17029 7.801104 TGGTAGAGTTCAGGATAAAATGCATA 58.199 34.615 0.00 0.00 0.00 3.14
6995 17030 6.662755 TGGTAGAGTTCAGGATAAAATGCAT 58.337 36.000 0.00 0.00 0.00 3.96
6996 17031 6.061022 TGGTAGAGTTCAGGATAAAATGCA 57.939 37.500 0.00 0.00 0.00 3.96
6997 17032 6.543831 ACATGGTAGAGTTCAGGATAAAATGC 59.456 38.462 0.00 0.00 0.00 3.56
6998 17033 8.511604 AACATGGTAGAGTTCAGGATAAAATG 57.488 34.615 0.00 0.00 0.00 2.32
7015 17050 6.813152 GCTAGTTTACTCGGTTAAACATGGTA 59.187 38.462 16.97 5.24 38.31 3.25
7038 17073 0.839946 ATTGCCTAGGATTCACCGCT 59.160 50.000 14.75 0.00 44.74 5.52
7063 17098 4.321230 GCGGTTTGAAAATGACATCTCCTT 60.321 41.667 0.00 0.00 0.00 3.36
7079 17114 3.617263 GTGGAATAGACTACAGCGGTTTG 59.383 47.826 0.00 0.00 0.00 2.93
7080 17115 3.369157 GGTGGAATAGACTACAGCGGTTT 60.369 47.826 0.00 0.00 0.00 3.27
7086 17121 7.762615 TCGTTTATTTGGTGGAATAGACTACAG 59.237 37.037 0.00 0.00 29.24 2.74
7114 17149 9.956640 CTCTTATAGCAATGGAGATTAAATCCT 57.043 33.333 10.50 0.00 37.74 3.24
7143 17343 4.142038 ACTTTGGGCTAGAACGTTGAATT 58.858 39.130 5.00 0.00 0.00 2.17
7154 17354 5.589050 GGTACCTTGATAAACTTTGGGCTAG 59.411 44.000 4.06 0.00 0.00 3.42
7227 17427 4.344865 TTCCCTTCGCAGGTGGCC 62.345 66.667 0.00 0.00 38.79 5.36
7247 17455 1.153429 GATCGTGTGGGGTGCTACC 60.153 63.158 0.00 0.00 37.60 3.18
7269 17477 2.423803 CCATGATGAAGAGGGCCAATGA 60.424 50.000 6.18 0.00 0.00 2.57
7318 17530 4.702826 GTGCAGCGAACGTGCGAC 62.703 66.667 22.89 11.39 44.35 5.19
7334 17546 0.326264 GCCAGACTGACATGGGAAGT 59.674 55.000 3.32 0.00 37.05 3.01
7480 17692 1.274167 ACACGAGCGGGTTTATCTTCA 59.726 47.619 0.00 0.00 0.00 3.02
7481 17693 1.925185 GACACGAGCGGGTTTATCTTC 59.075 52.381 0.00 0.00 0.00 2.87
7483 17695 0.892755 TGACACGAGCGGGTTTATCT 59.107 50.000 0.00 0.00 0.00 1.98
7488 17700 1.006102 CTCTTGACACGAGCGGGTT 60.006 57.895 0.00 0.00 0.00 4.11
7498 17710 1.277273 CCTCACTGGATGCTCTTGACA 59.723 52.381 0.00 0.00 38.35 3.58
7511 17723 1.001378 CCGGTTTTCTTTGCCTCACTG 60.001 52.381 0.00 0.00 0.00 3.66
7529 17741 5.640732 AGCTTTTTGTGCAATAGATTACCG 58.359 37.500 0.00 0.00 0.00 4.02
7532 17744 8.109705 TGAGAAGCTTTTTGTGCAATAGATTA 57.890 30.769 0.00 0.00 0.00 1.75
7535 17747 5.048504 CCTGAGAAGCTTTTTGTGCAATAGA 60.049 40.000 0.00 0.00 0.00 1.98
7569 17781 8.877864 TCTTAACATGTTACCTGGATTGATTT 57.122 30.769 17.85 0.00 0.00 2.17
7580 17792 6.017605 CCTGCATCAGATCTTAACATGTTACC 60.018 42.308 17.85 7.85 32.44 2.85
7617 17829 5.181622 TGTTTGTACAAAGTCGGTGTCTTTT 59.818 36.000 21.12 0.00 33.58 2.27
7621 17833 3.545426 GCTGTTTGTACAAAGTCGGTGTC 60.545 47.826 21.12 7.70 32.92 3.67
7622 17834 2.353579 GCTGTTTGTACAAAGTCGGTGT 59.646 45.455 21.12 0.00 32.92 4.16
7623 17835 2.612212 AGCTGTTTGTACAAAGTCGGTG 59.388 45.455 21.12 8.94 32.92 4.94
7625 17837 2.869801 TGAGCTGTTTGTACAAAGTCGG 59.130 45.455 21.12 15.63 32.92 4.79
7627 17839 4.127171 TCCTGAGCTGTTTGTACAAAGTC 58.873 43.478 21.12 14.87 32.92 3.01
7628 17840 4.150897 TCCTGAGCTGTTTGTACAAAGT 57.849 40.909 21.12 6.70 32.92 2.66
7629 17841 5.100751 CTTCCTGAGCTGTTTGTACAAAG 57.899 43.478 21.12 11.75 32.92 2.77
7668 17881 0.846427 AAGATGGGGGTTCTGGAGCA 60.846 55.000 0.00 0.00 0.00 4.26
7711 18007 1.039856 TCAAGGTTGCTTTCAAGGCC 58.960 50.000 0.00 0.00 31.93 5.19
7733 18029 0.407139 ATCTCAAGCCAAAGCAGGGT 59.593 50.000 0.00 0.00 43.56 4.34
7738 18034 3.930634 AAGACAATCTCAAGCCAAAGC 57.069 42.857 0.00 0.00 40.32 3.51
7776 18072 6.137104 AGGATATGAAATAAGGAGCAGCAT 57.863 37.500 0.00 0.00 29.06 3.79
7788 18084 6.533730 TCCGTAATGCAGAAGGATATGAAAT 58.466 36.000 2.46 0.00 0.00 2.17
7870 18166 8.538409 AGAACACAAAGATTATGCCAAAAATC 57.462 30.769 0.00 0.00 33.21 2.17
7879 18175 9.166173 TCATACCTCAAGAACACAAAGATTATG 57.834 33.333 0.00 0.00 0.00 1.90
7890 18186 2.838202 GGTCCCTCATACCTCAAGAACA 59.162 50.000 0.00 0.00 33.97 3.18
7900 18196 2.678190 GCAGTCACTTGGTCCCTCATAC 60.678 54.545 0.00 0.00 0.00 2.39
7940 18236 1.070445 CACCCATCTGCTTGCCAAAAA 59.930 47.619 0.00 0.00 0.00 1.94
7968 18264 4.393062 GGATTATAATGCACACATAGCGCT 59.607 41.667 17.26 17.26 34.62 5.92
7981 18277 6.286240 TGGTCGGAGATCTGGATTATAATG 57.714 41.667 0.00 0.00 39.28 1.90
7986 18282 3.772572 TGTTTGGTCGGAGATCTGGATTA 59.227 43.478 0.00 0.00 39.28 1.75
8068 18364 4.518590 CCCCGCAATGTGTATATTTCATGA 59.481 41.667 0.00 0.00 0.00 3.07
8118 18415 1.449246 GATCTTGTGCAGCTCGGCT 60.449 57.895 0.00 0.00 40.77 5.52
8251 18548 5.598005 ACATTCCTCATTCCAAAAGTGACAA 59.402 36.000 0.00 0.00 0.00 3.18
8302 18599 6.149129 ACAGCAGATAATCTGTCGATGTTA 57.851 37.500 0.00 0.00 45.94 2.41
8331 18633 7.341445 AGAAGCAGTTAGTCTTACAGATAGG 57.659 40.000 0.00 0.00 0.00 2.57
8341 18643 1.552792 GGCAGGAGAAGCAGTTAGTCT 59.447 52.381 0.00 0.00 0.00 3.24
8354 18656 0.531532 GTGGATCGACATGGCAGGAG 60.532 60.000 5.99 0.00 0.00 3.69
8356 18658 1.884464 CGTGGATCGACATGGCAGG 60.884 63.158 8.67 0.00 42.86 4.85
8364 18666 0.526662 ACTTCAGTCCGTGGATCGAC 59.473 55.000 0.00 0.00 42.86 4.20
8373 18675 2.297597 AGACCTTCTGAACTTCAGTCCG 59.702 50.000 16.75 8.73 44.58 4.79
8390 18695 4.225267 TCCCCTTCTCATAAACTGAAGACC 59.775 45.833 0.00 0.00 39.42 3.85
8391 18696 5.422214 TCCCCTTCTCATAAACTGAAGAC 57.578 43.478 0.00 0.00 39.42 3.01
8402 18707 5.259632 CAGAGAACAATTTCCCCTTCTCAT 58.740 41.667 8.54 0.00 40.71 2.90
8417 18722 1.004560 CTTCAGGCGCCAGAGAACA 60.005 57.895 31.54 10.19 0.00 3.18
8480 18785 3.119137 CCTGTGAATCTGTGATGGTCGTA 60.119 47.826 0.00 0.00 0.00 3.43
8533 18838 5.643379 AGTTTTCAGAGTTGCTTTTGTGA 57.357 34.783 0.00 0.00 0.00 3.58
8578 18883 6.936900 AGTGATCGCCTGTTTGCTATTTATAT 59.063 34.615 1.76 0.00 0.00 0.86
8579 18884 6.288294 AGTGATCGCCTGTTTGCTATTTATA 58.712 36.000 1.76 0.00 0.00 0.98
8583 18888 2.939103 GAGTGATCGCCTGTTTGCTATT 59.061 45.455 1.76 0.00 0.00 1.73
8593 18898 2.636830 CCAGATTTTGAGTGATCGCCT 58.363 47.619 1.76 0.00 0.00 5.52
8595 18900 2.632377 TCCCAGATTTTGAGTGATCGC 58.368 47.619 0.00 0.00 0.00 4.58
8596 18901 4.701765 AGATCCCAGATTTTGAGTGATCG 58.298 43.478 0.00 0.00 33.97 3.69
8615 18920 0.411058 AAGGCTTTGGCAAGGGAGAT 59.589 50.000 11.55 0.00 40.87 2.75
8672 18977 2.903855 GGCCCATCTGATGCCACG 60.904 66.667 12.17 0.00 44.70 4.94
8892 19203 8.641498 AAACATCTATGTCAACCATCTTTTCT 57.359 30.769 0.00 0.00 40.80 2.52
8952 19263 6.825721 AGTGGTAATTCTCCTTAGCATCTTTG 59.174 38.462 0.00 0.00 40.18 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.