Multiple sequence alignment - TraesCS1A01G060300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G060300 chr1A 100.000 2558 0 0 1 2558 41370976 41373533 0.000000e+00 4724.0
1 TraesCS1A01G060300 chr1A 97.299 1703 31 6 867 2558 42195723 42197421 0.000000e+00 2876.0
2 TraesCS1A01G060300 chr1A 85.604 389 54 2 147 535 333927461 333927847 8.520000e-110 407.0
3 TraesCS1A01G060300 chr1A 82.597 362 58 5 176 535 481931399 481931041 5.310000e-82 315.0
4 TraesCS1A01G060300 chr1A 81.606 386 60 9 153 534 473960221 473959843 2.470000e-80 309.0
5 TraesCS1A01G060300 chr1A 80.759 369 64 7 174 540 392497138 392496775 5.390000e-72 281.0
6 TraesCS1A01G060300 chr1A 81.928 332 56 4 143 473 488023515 488023187 6.970000e-71 278.0
7 TraesCS1A01G060300 chr1A 77.165 381 67 11 153 530 556095443 556095806 1.200000e-48 204.0
8 TraesCS1A01G060300 chr7A 93.137 1020 54 8 1555 2558 95817436 95816417 0.000000e+00 1482.0
9 TraesCS1A01G060300 chr7A 92.640 1019 54 8 1558 2558 616236837 616235822 0.000000e+00 1447.0
10 TraesCS1A01G060300 chr7A 85.593 118 14 1 1158 1275 149290534 149290420 1.240000e-23 121.0
11 TraesCS1A01G060300 chr3A 92.864 1023 52 12 1553 2558 243869942 243868924 0.000000e+00 1465.0
12 TraesCS1A01G060300 chr3A 91.977 1022 65 7 1554 2558 142659266 142660287 0.000000e+00 1417.0
13 TraesCS1A01G060300 chr3A 85.101 396 57 2 146 541 720086029 720085636 1.100000e-108 403.0
14 TraesCS1A01G060300 chr3A 83.938 386 55 7 153 535 32185413 32185794 1.870000e-96 363.0
15 TraesCS1A01G060300 chr3A 83.594 384 59 4 153 535 219859271 219859651 8.700000e-95 357.0
16 TraesCS1A01G060300 chr2A 92.843 1020 52 11 1557 2558 752021325 752020309 0.000000e+00 1459.0
17 TraesCS1A01G060300 chr2A 92.186 1011 63 11 1558 2558 775206626 775205622 0.000000e+00 1415.0
18 TraesCS1A01G060300 chr2A 84.595 383 58 1 152 533 619934930 619935312 1.860000e-101 379.0
19 TraesCS1A01G060300 chr2A 87.500 272 19 7 1282 1550 722817842 722818101 1.490000e-77 300.0
20 TraesCS1A01G060300 chr2A 83.509 285 26 13 1000 1268 722817518 722817797 1.970000e-61 246.0
21 TraesCS1A01G060300 chr2A 85.593 118 14 1 1158 1275 691022528 691022414 1.240000e-23 121.0
22 TraesCS1A01G060300 chr5A 92.490 1012 63 7 1558 2558 566618606 566617597 0.000000e+00 1435.0
23 TraesCS1A01G060300 chr5A 82.821 390 62 5 153 540 461805790 461805404 6.780000e-91 344.0
24 TraesCS1A01G060300 chr5A 82.292 384 59 8 153 532 622338870 622338492 8.830000e-85 324.0
25 TraesCS1A01G060300 chr5A 87.288 118 12 1 1158 1275 219650993 219650879 5.740000e-27 132.0
26 TraesCS1A01G060300 chr4A 92.035 1017 65 9 1558 2558 609572451 609571435 0.000000e+00 1415.0
27 TraesCS1A01G060300 chr2B 81.376 596 50 30 1000 1549 711531131 711531711 1.820000e-116 429.0
28 TraesCS1A01G060300 chr6B 84.848 396 60 0 140 535 175640066 175640461 1.430000e-107 399.0
29 TraesCS1A01G060300 chr3B 84.673 398 59 2 143 539 785633513 785633909 1.840000e-106 396.0
30 TraesCS1A01G060300 chr3B 79.780 455 39 22 1105 1550 800142412 800142002 5.390000e-72 281.0
31 TraesCS1A01G060300 chr7B 85.946 370 51 1 164 533 388157176 388156808 6.630000e-106 394.0
32 TraesCS1A01G060300 chr7D 83.679 386 60 3 153 537 582045767 582046150 6.730000e-96 361.0
33 TraesCS1A01G060300 chr7D 82.216 388 66 3 153 539 39037066 39037451 5.280000e-87 331.0
34 TraesCS1A01G060300 chr7D 82.308 390 62 6 153 539 100305934 100306319 5.280000e-87 331.0
35 TraesCS1A01G060300 chr1D 84.765 361 32 10 539 891 41572530 41572875 8.770000e-90 340.0
36 TraesCS1A01G060300 chr1D 80.157 383 61 6 153 533 279120598 279120229 3.240000e-69 272.0
37 TraesCS1A01G060300 chr1D 78.967 271 31 13 1281 1550 155886261 155886016 7.320000e-36 161.0
38 TraesCS1A01G060300 chr1D 84.000 150 9 2 923 1057 41573686 41573835 2.070000e-26 130.0
39 TraesCS1A01G060300 chr1D 83.000 100 16 1 1151 1249 155909595 155909496 3.510000e-14 89.8
40 TraesCS1A01G060300 chr5D 81.937 382 65 4 153 533 555498896 555498518 1.140000e-83 320.0
41 TraesCS1A01G060300 chr5D 84.365 307 45 3 221 526 14734189 14734493 5.350000e-77 298.0
42 TraesCS1A01G060300 chr4D 81.472 394 66 7 145 537 324003003 324003390 1.480000e-82 316.0
43 TraesCS1A01G060300 chr4D 80.418 383 61 4 153 534 505321930 505322299 1.940000e-71 279.0
44 TraesCS1A01G060300 chr4D 79.070 387 65 6 153 537 325364662 325364290 4.220000e-63 252.0
45 TraesCS1A01G060300 chr2D 87.361 269 19 6 1285 1550 588226572 588226828 6.920000e-76 294.0
46 TraesCS1A01G060300 chr2D 83.942 274 24 10 999 1255 588226241 588226511 7.070000e-61 244.0
47 TraesCS1A01G060300 chr4B 79.365 378 40 17 1013 1367 662564979 662565341 5.500000e-57 231.0
48 TraesCS1A01G060300 chr1B 88.136 118 10 1 539 656 61617402 61617515 1.230000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G060300 chr1A 41370976 41373533 2557 False 4724 4724 100.0000 1 2558 1 chr1A.!!$F1 2557
1 TraesCS1A01G060300 chr1A 42195723 42197421 1698 False 2876 2876 97.2990 867 2558 1 chr1A.!!$F2 1691
2 TraesCS1A01G060300 chr7A 95816417 95817436 1019 True 1482 1482 93.1370 1555 2558 1 chr7A.!!$R1 1003
3 TraesCS1A01G060300 chr7A 616235822 616236837 1015 True 1447 1447 92.6400 1558 2558 1 chr7A.!!$R3 1000
4 TraesCS1A01G060300 chr3A 243868924 243869942 1018 True 1465 1465 92.8640 1553 2558 1 chr3A.!!$R1 1005
5 TraesCS1A01G060300 chr3A 142659266 142660287 1021 False 1417 1417 91.9770 1554 2558 1 chr3A.!!$F2 1004
6 TraesCS1A01G060300 chr2A 752020309 752021325 1016 True 1459 1459 92.8430 1557 2558 1 chr2A.!!$R2 1001
7 TraesCS1A01G060300 chr2A 775205622 775206626 1004 True 1415 1415 92.1860 1558 2558 1 chr2A.!!$R3 1000
8 TraesCS1A01G060300 chr2A 722817518 722818101 583 False 273 300 85.5045 1000 1550 2 chr2A.!!$F2 550
9 TraesCS1A01G060300 chr5A 566617597 566618606 1009 True 1435 1435 92.4900 1558 2558 1 chr5A.!!$R3 1000
10 TraesCS1A01G060300 chr4A 609571435 609572451 1016 True 1415 1415 92.0350 1558 2558 1 chr4A.!!$R1 1000
11 TraesCS1A01G060300 chr2B 711531131 711531711 580 False 429 429 81.3760 1000 1549 1 chr2B.!!$F1 549
12 TraesCS1A01G060300 chr1D 41572530 41573835 1305 False 235 340 84.3825 539 1057 2 chr1D.!!$F1 518
13 TraesCS1A01G060300 chr2D 588226241 588226828 587 False 269 294 85.6515 999 1550 2 chr2D.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.028242 CAACCACGTTAAACTGCGCA 59.972 50.0 10.98 10.98 0.0 6.09 F
802 807 0.032813 CATCCACCTTCCCCAATGCT 60.033 55.0 0.00 0.00 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 2313 0.179936 CCTCTCCTTGTGGATCCTGC 59.820 60.0 14.23 6.63 42.29 4.85 R
1634 2498 0.247736 GGGCGTGACTGAGAGACATT 59.752 55.0 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.903208 GCCCCAGGCTGATCTAAAA 57.097 52.632 17.94 0.00 46.69 1.52
25 26 1.685148 GCCCCAGGCTGATCTAAAAG 58.315 55.000 17.94 0.00 46.69 2.27
26 27 1.685148 CCCCAGGCTGATCTAAAAGC 58.315 55.000 17.94 0.00 38.76 3.51
34 35 4.114058 GCTGATCTAAAAGCCAAATGCA 57.886 40.909 0.00 0.00 44.83 3.96
35 36 4.690122 GCTGATCTAAAAGCCAAATGCAT 58.310 39.130 0.00 0.00 44.83 3.96
36 37 4.743644 GCTGATCTAAAAGCCAAATGCATC 59.256 41.667 0.00 0.00 44.83 3.91
37 38 4.923893 TGATCTAAAAGCCAAATGCATCG 58.076 39.130 0.00 0.00 44.83 3.84
38 39 4.639755 TGATCTAAAAGCCAAATGCATCGA 59.360 37.500 0.00 0.00 44.83 3.59
39 40 4.355543 TCTAAAAGCCAAATGCATCGAC 57.644 40.909 0.00 0.00 44.83 4.20
40 41 2.368655 AAAAGCCAAATGCATCGACC 57.631 45.000 0.00 0.00 44.83 4.79
41 42 1.255882 AAAGCCAAATGCATCGACCA 58.744 45.000 0.00 0.00 44.83 4.02
42 43 1.255882 AAGCCAAATGCATCGACCAA 58.744 45.000 0.00 0.00 44.83 3.67
43 44 1.477553 AGCCAAATGCATCGACCAAT 58.522 45.000 0.00 0.00 44.83 3.16
44 45 2.653726 AGCCAAATGCATCGACCAATA 58.346 42.857 0.00 0.00 44.83 1.90
45 46 3.225104 AGCCAAATGCATCGACCAATAT 58.775 40.909 0.00 0.00 44.83 1.28
46 47 3.638160 AGCCAAATGCATCGACCAATATT 59.362 39.130 0.00 0.00 44.83 1.28
47 48 4.826733 AGCCAAATGCATCGACCAATATTA 59.173 37.500 0.00 0.00 44.83 0.98
48 49 4.917415 GCCAAATGCATCGACCAATATTAC 59.083 41.667 0.00 0.00 40.77 1.89
49 50 5.278463 GCCAAATGCATCGACCAATATTACT 60.278 40.000 0.00 0.00 40.77 2.24
50 51 6.373779 CCAAATGCATCGACCAATATTACTC 58.626 40.000 0.00 0.00 0.00 2.59
51 52 6.205464 CCAAATGCATCGACCAATATTACTCT 59.795 38.462 0.00 0.00 0.00 3.24
52 53 6.791887 AATGCATCGACCAATATTACTCTG 57.208 37.500 0.00 0.00 0.00 3.35
53 54 4.631131 TGCATCGACCAATATTACTCTGG 58.369 43.478 0.00 0.00 36.24 3.86
54 55 4.343814 TGCATCGACCAATATTACTCTGGA 59.656 41.667 0.00 0.00 34.16 3.86
55 56 4.926238 GCATCGACCAATATTACTCTGGAG 59.074 45.833 0.00 0.00 34.16 3.86
56 57 4.585955 TCGACCAATATTACTCTGGAGC 57.414 45.455 0.00 0.00 34.16 4.70
57 58 3.004419 TCGACCAATATTACTCTGGAGCG 59.996 47.826 0.00 1.89 34.91 5.03
58 59 3.004419 CGACCAATATTACTCTGGAGCGA 59.996 47.826 0.00 0.00 35.28 4.93
59 60 4.321304 CGACCAATATTACTCTGGAGCGAT 60.321 45.833 0.00 0.00 35.28 4.58
60 61 4.887748 ACCAATATTACTCTGGAGCGATG 58.112 43.478 0.00 0.00 34.16 3.84
61 62 4.588951 ACCAATATTACTCTGGAGCGATGA 59.411 41.667 0.00 0.00 34.16 2.92
62 63 5.247110 ACCAATATTACTCTGGAGCGATGAT 59.753 40.000 0.00 0.00 34.16 2.45
63 64 5.809562 CCAATATTACTCTGGAGCGATGATC 59.190 44.000 0.00 0.00 31.38 2.92
64 65 3.567576 ATTACTCTGGAGCGATGATCG 57.432 47.619 11.02 11.02 43.89 3.69
65 66 1.239347 TACTCTGGAGCGATGATCGG 58.761 55.000 17.27 0.00 40.84 4.18
66 67 1.288439 CTCTGGAGCGATGATCGGG 59.712 63.158 17.27 0.00 40.84 5.14
67 68 2.356793 CTGGAGCGATGATCGGGC 60.357 66.667 17.27 0.19 40.84 6.13
68 69 4.284860 TGGAGCGATGATCGGGCG 62.285 66.667 17.27 0.00 40.84 6.13
69 70 3.978491 GGAGCGATGATCGGGCGA 61.978 66.667 17.27 0.00 40.84 5.54
70 71 2.429907 GAGCGATGATCGGGCGAG 60.430 66.667 17.27 0.00 40.84 5.03
71 72 4.654412 AGCGATGATCGGGCGAGC 62.654 66.667 17.27 0.00 40.84 5.03
72 73 4.950062 GCGATGATCGGGCGAGCA 62.950 66.667 17.27 0.00 44.87 4.26
76 77 2.202919 TGATCGGGCGAGCATGTG 60.203 61.111 0.00 0.00 35.47 3.21
77 78 2.969238 GATCGGGCGAGCATGTGG 60.969 66.667 0.00 0.00 0.00 4.17
78 79 4.552365 ATCGGGCGAGCATGTGGG 62.552 66.667 0.00 0.00 0.00 4.61
82 83 3.512516 GGCGAGCATGTGGGCTTC 61.513 66.667 0.00 0.00 45.99 3.86
83 84 2.747460 GCGAGCATGTGGGCTTCA 60.747 61.111 0.00 0.00 45.99 3.02
84 85 2.334946 GCGAGCATGTGGGCTTCAA 61.335 57.895 0.00 0.00 45.99 2.69
85 86 1.865788 GCGAGCATGTGGGCTTCAAA 61.866 55.000 0.00 0.00 45.99 2.69
86 87 0.169672 CGAGCATGTGGGCTTCAAAG 59.830 55.000 0.00 0.00 45.99 2.77
87 88 1.251251 GAGCATGTGGGCTTCAAAGT 58.749 50.000 0.00 0.00 45.99 2.66
88 89 1.615392 GAGCATGTGGGCTTCAAAGTT 59.385 47.619 0.00 0.00 45.99 2.66
89 90 2.036346 GAGCATGTGGGCTTCAAAGTTT 59.964 45.455 0.00 0.00 45.99 2.66
90 91 2.137523 GCATGTGGGCTTCAAAGTTTG 58.862 47.619 9.44 9.44 0.00 2.93
91 92 2.224018 GCATGTGGGCTTCAAAGTTTGA 60.224 45.455 14.35 14.35 38.04 2.69
92 93 3.740764 GCATGTGGGCTTCAAAGTTTGAA 60.741 43.478 25.48 25.48 46.68 2.69
102 103 5.993748 TTCAAAGTTTGAAACCCACTTCT 57.006 34.783 25.15 0.00 45.94 2.85
103 104 5.576447 TCAAAGTTTGAAACCCACTTCTC 57.424 39.130 15.92 0.00 36.59 2.87
104 105 5.013547 TCAAAGTTTGAAACCCACTTCTCA 58.986 37.500 15.92 0.00 36.59 3.27
105 106 5.656416 TCAAAGTTTGAAACCCACTTCTCAT 59.344 36.000 15.92 0.00 36.59 2.90
106 107 5.520376 AAGTTTGAAACCCACTTCTCATG 57.480 39.130 4.14 0.00 0.00 3.07
107 108 4.792068 AGTTTGAAACCCACTTCTCATGA 58.208 39.130 4.14 0.00 0.00 3.07
108 109 4.580580 AGTTTGAAACCCACTTCTCATGAC 59.419 41.667 4.14 0.00 0.00 3.06
109 110 4.437682 TTGAAACCCACTTCTCATGACT 57.562 40.909 0.00 0.00 0.00 3.41
110 111 3.743521 TGAAACCCACTTCTCATGACTG 58.256 45.455 0.00 0.00 0.00 3.51
111 112 3.390967 TGAAACCCACTTCTCATGACTGA 59.609 43.478 0.00 0.00 0.00 3.41
112 113 4.141505 TGAAACCCACTTCTCATGACTGAA 60.142 41.667 0.00 0.00 0.00 3.02
113 114 3.409026 ACCCACTTCTCATGACTGAAC 57.591 47.619 0.00 0.00 0.00 3.18
114 115 2.975489 ACCCACTTCTCATGACTGAACT 59.025 45.455 0.00 0.00 0.00 3.01
115 116 3.007398 ACCCACTTCTCATGACTGAACTC 59.993 47.826 0.00 0.00 0.00 3.01
116 117 3.007290 CCCACTTCTCATGACTGAACTCA 59.993 47.826 0.00 0.00 0.00 3.41
117 118 4.503817 CCCACTTCTCATGACTGAACTCAA 60.504 45.833 0.00 0.00 0.00 3.02
118 119 4.450419 CCACTTCTCATGACTGAACTCAAC 59.550 45.833 0.00 0.00 0.00 3.18
119 120 4.450419 CACTTCTCATGACTGAACTCAACC 59.550 45.833 0.00 0.00 0.00 3.77
120 121 4.101585 ACTTCTCATGACTGAACTCAACCA 59.898 41.667 0.00 0.00 0.00 3.67
121 122 3.995199 TCTCATGACTGAACTCAACCAC 58.005 45.455 0.00 0.00 0.00 4.16
122 123 2.733552 CTCATGACTGAACTCAACCACG 59.266 50.000 0.00 0.00 0.00 4.94
123 124 2.102420 TCATGACTGAACTCAACCACGT 59.898 45.455 0.00 0.00 0.00 4.49
124 125 2.684001 TGACTGAACTCAACCACGTT 57.316 45.000 0.00 0.00 0.00 3.99
125 126 3.804786 TGACTGAACTCAACCACGTTA 57.195 42.857 0.00 0.00 0.00 3.18
126 127 4.126208 TGACTGAACTCAACCACGTTAA 57.874 40.909 0.00 0.00 0.00 2.01
127 128 4.505808 TGACTGAACTCAACCACGTTAAA 58.494 39.130 0.00 0.00 0.00 1.52
128 129 4.330620 TGACTGAACTCAACCACGTTAAAC 59.669 41.667 0.00 0.00 0.00 2.01
129 130 4.510571 ACTGAACTCAACCACGTTAAACT 58.489 39.130 0.00 0.00 0.00 2.66
130 131 4.331717 ACTGAACTCAACCACGTTAAACTG 59.668 41.667 0.00 0.00 0.00 3.16
131 132 3.064271 TGAACTCAACCACGTTAAACTGC 59.936 43.478 0.00 0.00 0.00 4.40
132 133 1.595794 ACTCAACCACGTTAAACTGCG 59.404 47.619 0.00 0.00 0.00 5.18
133 134 0.305313 TCAACCACGTTAAACTGCGC 59.695 50.000 0.00 0.00 0.00 6.09
134 135 0.028242 CAACCACGTTAAACTGCGCA 59.972 50.000 10.98 10.98 0.00 6.09
135 136 0.948678 AACCACGTTAAACTGCGCAT 59.051 45.000 12.24 0.00 0.00 4.73
136 137 0.515564 ACCACGTTAAACTGCGCATC 59.484 50.000 12.24 0.00 0.00 3.91
137 138 0.796312 CCACGTTAAACTGCGCATCT 59.204 50.000 12.24 0.00 0.00 2.90
138 139 1.201921 CCACGTTAAACTGCGCATCTC 60.202 52.381 12.24 0.00 0.00 2.75
139 140 1.726791 CACGTTAAACTGCGCATCTCT 59.273 47.619 12.24 0.00 0.00 3.10
140 141 2.921121 CACGTTAAACTGCGCATCTCTA 59.079 45.455 12.24 0.00 0.00 2.43
141 142 3.000674 CACGTTAAACTGCGCATCTCTAG 60.001 47.826 12.24 0.00 0.00 2.43
142 143 3.119602 ACGTTAAACTGCGCATCTCTAGA 60.120 43.478 12.24 0.00 0.00 2.43
143 144 3.240861 CGTTAAACTGCGCATCTCTAGAC 59.759 47.826 12.24 3.48 0.00 2.59
144 145 4.425520 GTTAAACTGCGCATCTCTAGACT 58.574 43.478 12.24 0.00 0.00 3.24
145 146 3.601443 AAACTGCGCATCTCTAGACTT 57.399 42.857 12.24 0.00 0.00 3.01
146 147 4.720649 AAACTGCGCATCTCTAGACTTA 57.279 40.909 12.24 0.00 0.00 2.24
147 148 3.980646 ACTGCGCATCTCTAGACTTAG 57.019 47.619 12.24 0.00 0.00 2.18
148 149 2.621055 ACTGCGCATCTCTAGACTTAGG 59.379 50.000 12.24 0.00 0.00 2.69
149 150 1.338337 TGCGCATCTCTAGACTTAGGC 59.662 52.381 5.66 0.00 0.00 3.93
150 151 1.611491 GCGCATCTCTAGACTTAGGCT 59.389 52.381 0.30 0.00 0.00 4.58
151 152 2.351350 GCGCATCTCTAGACTTAGGCTC 60.351 54.545 0.30 0.00 0.00 4.70
152 153 3.146066 CGCATCTCTAGACTTAGGCTCT 58.854 50.000 0.00 0.00 0.00 4.09
153 154 3.058293 CGCATCTCTAGACTTAGGCTCTG 60.058 52.174 0.00 0.00 0.00 3.35
154 155 3.888930 GCATCTCTAGACTTAGGCTCTGT 59.111 47.826 0.00 0.00 0.00 3.41
155 156 4.340950 GCATCTCTAGACTTAGGCTCTGTT 59.659 45.833 0.00 0.00 0.00 3.16
156 157 5.163457 GCATCTCTAGACTTAGGCTCTGTTT 60.163 44.000 0.00 0.00 0.00 2.83
157 158 5.906113 TCTCTAGACTTAGGCTCTGTTTG 57.094 43.478 0.00 0.00 0.00 2.93
158 159 4.707448 TCTCTAGACTTAGGCTCTGTTTGG 59.293 45.833 0.00 0.00 0.00 3.28
159 160 4.417437 TCTAGACTTAGGCTCTGTTTGGT 58.583 43.478 0.00 0.00 0.00 3.67
160 161 4.838986 TCTAGACTTAGGCTCTGTTTGGTT 59.161 41.667 0.00 0.00 0.00 3.67
161 162 4.009370 AGACTTAGGCTCTGTTTGGTTC 57.991 45.455 0.00 0.00 0.00 3.62
162 163 3.391296 AGACTTAGGCTCTGTTTGGTTCA 59.609 43.478 0.00 0.00 0.00 3.18
163 164 4.042187 AGACTTAGGCTCTGTTTGGTTCAT 59.958 41.667 0.00 0.00 0.00 2.57
164 165 5.248477 AGACTTAGGCTCTGTTTGGTTCATA 59.752 40.000 0.00 0.00 0.00 2.15
165 166 5.876357 ACTTAGGCTCTGTTTGGTTCATAA 58.124 37.500 0.00 0.00 0.00 1.90
166 167 5.940470 ACTTAGGCTCTGTTTGGTTCATAAG 59.060 40.000 0.00 0.00 0.00 1.73
167 168 4.373156 AGGCTCTGTTTGGTTCATAAGT 57.627 40.909 0.00 0.00 0.00 2.24
168 169 4.327680 AGGCTCTGTTTGGTTCATAAGTC 58.672 43.478 0.00 0.00 0.00 3.01
169 170 4.042187 AGGCTCTGTTTGGTTCATAAGTCT 59.958 41.667 0.00 0.00 0.00 3.24
170 171 4.762251 GGCTCTGTTTGGTTCATAAGTCTT 59.238 41.667 0.00 0.00 0.00 3.01
171 172 5.938125 GGCTCTGTTTGGTTCATAAGTCTTA 59.062 40.000 0.00 0.00 0.00 2.10
172 173 6.430000 GGCTCTGTTTGGTTCATAAGTCTTAA 59.570 38.462 0.00 0.00 0.00 1.85
173 174 7.361286 GGCTCTGTTTGGTTCATAAGTCTTAAG 60.361 40.741 0.00 0.00 0.00 1.85
174 175 7.387948 GCTCTGTTTGGTTCATAAGTCTTAAGA 59.612 37.037 0.00 0.00 0.00 2.10
175 176 8.603242 TCTGTTTGGTTCATAAGTCTTAAGAC 57.397 34.615 25.24 25.24 45.08 3.01
245 246 5.845391 CCTGTTTGTTTTCAGGGACTAAA 57.155 39.130 3.58 0.00 45.11 1.85
246 247 6.215495 CCTGTTTGTTTTCAGGGACTAAAA 57.785 37.500 3.58 0.00 45.11 1.52
247 248 6.635755 CCTGTTTGTTTTCAGGGACTAAAAA 58.364 36.000 3.58 0.00 45.11 1.94
248 249 6.756542 CCTGTTTGTTTTCAGGGACTAAAAAG 59.243 38.462 3.58 0.00 45.11 2.27
249 250 7.234661 TGTTTGTTTTCAGGGACTAAAAAGT 57.765 32.000 0.00 0.00 36.02 2.66
250 251 7.317390 TGTTTGTTTTCAGGGACTAAAAAGTC 58.683 34.615 0.00 0.00 36.02 3.01
261 262 5.341872 GACTAAAAAGTCCCTAGTCCCTC 57.658 47.826 0.00 0.00 36.91 4.30
262 263 4.102598 ACTAAAAAGTCCCTAGTCCCTCC 58.897 47.826 0.00 0.00 0.00 4.30
263 264 1.569653 AAAAGTCCCTAGTCCCTCCG 58.430 55.000 0.00 0.00 0.00 4.63
264 265 0.412640 AAAGTCCCTAGTCCCTCCGT 59.587 55.000 0.00 0.00 0.00 4.69
265 266 1.302907 AAGTCCCTAGTCCCTCCGTA 58.697 55.000 0.00 0.00 0.00 4.02
266 267 1.302907 AGTCCCTAGTCCCTCCGTAA 58.697 55.000 0.00 0.00 0.00 3.18
267 268 1.642762 AGTCCCTAGTCCCTCCGTAAA 59.357 52.381 0.00 0.00 0.00 2.01
268 269 2.030371 GTCCCTAGTCCCTCCGTAAAG 58.970 57.143 0.00 0.00 0.00 1.85
269 270 1.063417 TCCCTAGTCCCTCCGTAAAGG 60.063 57.143 0.00 0.00 42.97 3.11
270 271 1.342774 CCCTAGTCCCTCCGTAAAGGT 60.343 57.143 0.00 0.00 41.99 3.50
271 272 2.464782 CCTAGTCCCTCCGTAAAGGTT 58.535 52.381 0.00 0.00 41.99 3.50
272 273 3.628257 CCCTAGTCCCTCCGTAAAGGTTA 60.628 52.174 0.00 0.00 41.99 2.85
273 274 4.221530 CCTAGTCCCTCCGTAAAGGTTAT 58.778 47.826 0.00 0.00 41.99 1.89
274 275 5.388654 CCTAGTCCCTCCGTAAAGGTTATA 58.611 45.833 0.00 0.00 41.99 0.98
275 276 5.835280 CCTAGTCCCTCCGTAAAGGTTATAA 59.165 44.000 0.00 0.00 41.99 0.98
276 277 6.324770 CCTAGTCCCTCCGTAAAGGTTATAAA 59.675 42.308 0.00 0.00 41.99 1.40
277 278 6.625532 AGTCCCTCCGTAAAGGTTATAAAA 57.374 37.500 0.00 0.00 41.99 1.52
278 279 7.204243 AGTCCCTCCGTAAAGGTTATAAAAT 57.796 36.000 0.00 0.00 41.99 1.82
279 280 8.322905 AGTCCCTCCGTAAAGGTTATAAAATA 57.677 34.615 0.00 0.00 41.99 1.40
280 281 8.427276 AGTCCCTCCGTAAAGGTTATAAAATAG 58.573 37.037 0.00 0.00 41.99 1.73
281 282 7.172190 GTCCCTCCGTAAAGGTTATAAAATAGC 59.828 40.741 0.00 0.00 41.99 2.97
282 283 6.429078 CCCTCCGTAAAGGTTATAAAATAGCC 59.571 42.308 0.00 0.00 41.99 3.93
283 284 6.993902 CCTCCGTAAAGGTTATAAAATAGCCA 59.006 38.462 3.13 0.00 41.99 4.75
284 285 7.664318 CCTCCGTAAAGGTTATAAAATAGCCAT 59.336 37.037 3.13 0.00 41.99 4.40
285 286 8.385898 TCCGTAAAGGTTATAAAATAGCCATG 57.614 34.615 3.13 0.00 41.99 3.66
286 287 7.994334 TCCGTAAAGGTTATAAAATAGCCATGT 59.006 33.333 3.13 0.00 41.99 3.21
287 288 8.626526 CCGTAAAGGTTATAAAATAGCCATGTT 58.373 33.333 3.13 0.00 34.51 2.71
292 293 8.919777 AGGTTATAAAATAGCCATGTTACTCC 57.080 34.615 3.13 0.00 0.00 3.85
293 294 8.724310 AGGTTATAAAATAGCCATGTTACTCCT 58.276 33.333 3.13 0.00 0.00 3.69
294 295 8.784043 GGTTATAAAATAGCCATGTTACTCCTG 58.216 37.037 0.00 0.00 0.00 3.86
295 296 8.784043 GTTATAAAATAGCCATGTTACTCCTGG 58.216 37.037 0.00 0.00 35.40 4.45
296 297 4.862641 AAATAGCCATGTTACTCCTGGT 57.137 40.909 0.00 0.00 34.88 4.00
297 298 5.968676 AAATAGCCATGTTACTCCTGGTA 57.031 39.130 0.00 0.00 34.88 3.25
298 299 6.515512 AAATAGCCATGTTACTCCTGGTAT 57.484 37.500 0.00 0.00 34.88 2.73
299 300 7.626999 AAATAGCCATGTTACTCCTGGTATA 57.373 36.000 0.00 0.00 34.88 1.47
300 301 7.814693 AATAGCCATGTTACTCCTGGTATAT 57.185 36.000 0.00 0.00 34.88 0.86
301 302 8.911018 AATAGCCATGTTACTCCTGGTATATA 57.089 34.615 0.00 0.00 34.88 0.86
302 303 6.859112 AGCCATGTTACTCCTGGTATATAG 57.141 41.667 0.00 0.00 34.88 1.31
303 304 6.562228 AGCCATGTTACTCCTGGTATATAGA 58.438 40.000 0.00 0.00 34.88 1.98
304 305 7.016914 AGCCATGTTACTCCTGGTATATAGAA 58.983 38.462 0.00 0.00 34.88 2.10
305 306 7.512746 AGCCATGTTACTCCTGGTATATAGAAA 59.487 37.037 0.00 0.00 34.88 2.52
306 307 8.154856 GCCATGTTACTCCTGGTATATAGAAAA 58.845 37.037 0.00 0.00 34.88 2.29
330 331 9.874205 AAAATAACAATCAATCAACACCATAGG 57.126 29.630 0.00 0.00 0.00 2.57
331 332 5.920193 AACAATCAATCAACACCATAGGG 57.080 39.130 0.00 0.00 41.29 3.53
351 352 3.142838 GCGGGCCAATGAGTGCAT 61.143 61.111 4.39 0.00 35.92 3.96
352 353 2.802792 CGGGCCAATGAGTGCATG 59.197 61.111 4.39 0.00 34.26 4.06
353 354 2.777972 CGGGCCAATGAGTGCATGG 61.778 63.158 4.39 0.00 34.26 3.66
354 355 1.380246 GGGCCAATGAGTGCATGGA 60.380 57.895 4.39 0.00 34.26 3.41
355 356 1.389609 GGGCCAATGAGTGCATGGAG 61.390 60.000 4.39 0.00 34.26 3.86
356 357 1.389609 GGCCAATGAGTGCATGGAGG 61.390 60.000 7.48 0.00 34.26 4.30
357 358 1.389609 GCCAATGAGTGCATGGAGGG 61.390 60.000 7.48 0.00 34.26 4.30
358 359 0.754217 CCAATGAGTGCATGGAGGGG 60.754 60.000 0.00 0.00 34.26 4.79
359 360 1.076485 AATGAGTGCATGGAGGGGC 60.076 57.895 0.00 0.00 34.26 5.80
360 361 1.866483 AATGAGTGCATGGAGGGGCA 61.866 55.000 0.00 0.00 37.77 5.36
361 362 1.652187 ATGAGTGCATGGAGGGGCAT 61.652 55.000 0.00 0.00 42.75 4.40
362 363 1.076485 GAGTGCATGGAGGGGCATT 60.076 57.895 0.00 0.00 42.75 3.56
363 364 1.380785 AGTGCATGGAGGGGCATTG 60.381 57.895 0.00 0.00 42.75 2.82
364 365 2.760799 TGCATGGAGGGGCATTGC 60.761 61.111 0.00 0.00 34.58 3.56
365 366 2.443390 GCATGGAGGGGCATTGCT 60.443 61.111 8.82 0.00 0.00 3.91
366 367 2.792947 GCATGGAGGGGCATTGCTG 61.793 63.158 8.82 0.00 0.00 4.41
367 368 2.131709 CATGGAGGGGCATTGCTGG 61.132 63.158 8.82 0.00 0.00 4.85
368 369 2.318966 ATGGAGGGGCATTGCTGGA 61.319 57.895 8.82 0.00 0.00 3.86
369 370 1.877672 ATGGAGGGGCATTGCTGGAA 61.878 55.000 8.82 0.00 0.00 3.53
370 371 1.305213 GGAGGGGCATTGCTGGAAA 60.305 57.895 8.82 0.00 0.00 3.13
371 372 0.904394 GGAGGGGCATTGCTGGAAAA 60.904 55.000 8.82 0.00 0.00 2.29
372 373 0.533951 GAGGGGCATTGCTGGAAAAG 59.466 55.000 8.82 0.00 0.00 2.27
373 374 0.178924 AGGGGCATTGCTGGAAAAGT 60.179 50.000 8.82 0.00 0.00 2.66
374 375 0.247460 GGGGCATTGCTGGAAAAGTC 59.753 55.000 8.82 0.00 0.00 3.01
375 376 0.247460 GGGCATTGCTGGAAAAGTCC 59.753 55.000 8.82 0.00 45.21 3.85
376 377 0.247460 GGCATTGCTGGAAAAGTCCC 59.753 55.000 8.82 0.00 44.23 4.46
377 378 0.968405 GCATTGCTGGAAAAGTCCCA 59.032 50.000 0.16 0.00 44.23 4.37
378 379 1.344114 GCATTGCTGGAAAAGTCCCAA 59.656 47.619 0.16 0.00 44.23 4.12
379 380 2.224257 GCATTGCTGGAAAAGTCCCAAA 60.224 45.455 0.16 0.00 44.23 3.28
380 381 3.743899 GCATTGCTGGAAAAGTCCCAAAA 60.744 43.478 0.16 0.00 44.23 2.44
381 382 4.450053 CATTGCTGGAAAAGTCCCAAAAA 58.550 39.130 0.00 0.00 44.23 1.94
382 383 3.817709 TGCTGGAAAAGTCCCAAAAAG 57.182 42.857 0.00 0.00 44.23 2.27
383 384 3.103742 TGCTGGAAAAGTCCCAAAAAGT 58.896 40.909 0.00 0.00 44.23 2.66
384 385 3.132111 TGCTGGAAAAGTCCCAAAAAGTC 59.868 43.478 0.00 0.00 44.23 3.01
385 386 3.492656 GCTGGAAAAGTCCCAAAAAGTCC 60.493 47.826 0.00 0.00 44.23 3.85
386 387 3.704061 CTGGAAAAGTCCCAAAAAGTCCA 59.296 43.478 0.00 0.00 44.23 4.02
387 388 4.097418 TGGAAAAGTCCCAAAAAGTCCAA 58.903 39.130 0.00 0.00 44.23 3.53
388 389 4.532521 TGGAAAAGTCCCAAAAAGTCCAAA 59.467 37.500 0.00 0.00 44.23 3.28
389 390 5.013183 TGGAAAAGTCCCAAAAAGTCCAAAA 59.987 36.000 0.00 0.00 44.23 2.44
390 391 5.941058 GGAAAAGTCCCAAAAAGTCCAAAAA 59.059 36.000 0.00 0.00 38.08 1.94
416 417 7.118496 AGACTTTTCTTGAGAGTCTTCTTCA 57.882 36.000 0.00 0.00 45.77 3.02
417 418 7.734942 AGACTTTTCTTGAGAGTCTTCTTCAT 58.265 34.615 0.00 0.00 45.77 2.57
418 419 8.210265 AGACTTTTCTTGAGAGTCTTCTTCATT 58.790 33.333 0.00 0.00 45.77 2.57
419 420 8.744568 ACTTTTCTTGAGAGTCTTCTTCATTT 57.255 30.769 0.00 0.00 32.53 2.32
420 421 9.838339 ACTTTTCTTGAGAGTCTTCTTCATTTA 57.162 29.630 0.00 0.00 32.53 1.40
424 425 9.442047 TTCTTGAGAGTCTTCTTCATTTAATCC 57.558 33.333 0.00 0.00 32.53 3.01
425 426 8.820831 TCTTGAGAGTCTTCTTCATTTAATCCT 58.179 33.333 0.00 0.00 32.53 3.24
445 446 6.644248 TCCTAAAAAGCAACTTTTAGTCCC 57.356 37.500 17.43 0.00 41.98 4.46
446 447 6.370453 TCCTAAAAAGCAACTTTTAGTCCCT 58.630 36.000 17.43 0.00 41.98 4.20
447 448 7.519927 TCCTAAAAAGCAACTTTTAGTCCCTA 58.480 34.615 17.43 0.00 41.98 3.53
448 449 8.000127 TCCTAAAAAGCAACTTTTAGTCCCTAA 59.000 33.333 17.43 0.00 41.98 2.69
449 450 8.803235 CCTAAAAAGCAACTTTTAGTCCCTAAT 58.197 33.333 17.43 0.00 41.98 1.73
452 453 8.935614 AAAAGCAACTTTTAGTCCCTAATAGT 57.064 30.769 3.57 2.51 41.17 2.12
453 454 8.563123 AAAGCAACTTTTAGTCCCTAATAGTC 57.437 34.615 7.31 0.00 37.29 2.59
454 455 7.497773 AGCAACTTTTAGTCCCTAATAGTCT 57.502 36.000 7.31 1.15 37.29 3.24
455 456 7.919151 AGCAACTTTTAGTCCCTAATAGTCTT 58.081 34.615 7.31 0.00 37.29 3.01
456 457 8.383947 AGCAACTTTTAGTCCCTAATAGTCTTT 58.616 33.333 7.31 0.00 37.29 2.52
457 458 8.666573 GCAACTTTTAGTCCCTAATAGTCTTTC 58.333 37.037 7.31 0.00 37.29 2.62
458 459 9.163899 CAACTTTTAGTCCCTAATAGTCTTTCC 57.836 37.037 7.31 0.00 37.29 3.13
459 460 8.682297 ACTTTTAGTCCCTAATAGTCTTTCCT 57.318 34.615 2.51 0.00 34.75 3.36
460 461 8.541234 ACTTTTAGTCCCTAATAGTCTTTCCTG 58.459 37.037 2.51 0.00 34.75 3.86
461 462 8.445361 TTTTAGTCCCTAATAGTCTTTCCTGT 57.555 34.615 0.00 0.00 0.00 4.00
462 463 8.445361 TTTAGTCCCTAATAGTCTTTCCTGTT 57.555 34.615 0.00 0.00 0.00 3.16
463 464 6.954352 AGTCCCTAATAGTCTTTCCTGTTT 57.046 37.500 0.00 0.00 0.00 2.83
464 465 6.712276 AGTCCCTAATAGTCTTTCCTGTTTG 58.288 40.000 0.00 0.00 0.00 2.93
465 466 6.272558 AGTCCCTAATAGTCTTTCCTGTTTGT 59.727 38.462 0.00 0.00 0.00 2.83
466 467 6.940867 GTCCCTAATAGTCTTTCCTGTTTGTT 59.059 38.462 0.00 0.00 0.00 2.83
467 468 7.447545 GTCCCTAATAGTCTTTCCTGTTTGTTT 59.552 37.037 0.00 0.00 0.00 2.83
468 469 8.662255 TCCCTAATAGTCTTTCCTGTTTGTTTA 58.338 33.333 0.00 0.00 0.00 2.01
469 470 9.292195 CCCTAATAGTCTTTCCTGTTTGTTTAA 57.708 33.333 0.00 0.00 0.00 1.52
475 476 8.981724 AGTCTTTCCTGTTTGTTTAAAAAGTC 57.018 30.769 0.00 0.00 30.49 3.01
476 477 8.803235 AGTCTTTCCTGTTTGTTTAAAAAGTCT 58.197 29.630 0.00 0.00 30.49 3.24
477 478 9.419297 GTCTTTCCTGTTTGTTTAAAAAGTCTT 57.581 29.630 0.00 0.00 30.49 3.01
478 479 9.990360 TCTTTCCTGTTTGTTTAAAAAGTCTTT 57.010 25.926 0.00 0.00 30.49 2.52
516 517 9.915629 TTTCTAGTCTCTACATCAAAAAGTCTC 57.084 33.333 0.00 0.00 0.00 3.36
517 518 8.871629 TCTAGTCTCTACATCAAAAAGTCTCT 57.128 34.615 0.00 0.00 0.00 3.10
518 519 8.735315 TCTAGTCTCTACATCAAAAAGTCTCTG 58.265 37.037 0.00 0.00 0.00 3.35
519 520 7.531857 AGTCTCTACATCAAAAAGTCTCTGA 57.468 36.000 0.00 0.00 0.00 3.27
520 521 7.957002 AGTCTCTACATCAAAAAGTCTCTGAA 58.043 34.615 0.00 0.00 0.00 3.02
521 522 8.424918 AGTCTCTACATCAAAAAGTCTCTGAAA 58.575 33.333 0.00 0.00 0.00 2.69
522 523 9.046296 GTCTCTACATCAAAAAGTCTCTGAAAA 57.954 33.333 0.00 0.00 0.00 2.29
523 524 9.046296 TCTCTACATCAAAAAGTCTCTGAAAAC 57.954 33.333 0.00 0.00 0.00 2.43
524 525 8.731275 TCTACATCAAAAAGTCTCTGAAAACA 57.269 30.769 0.00 0.00 0.00 2.83
525 526 9.173021 TCTACATCAAAAAGTCTCTGAAAACAA 57.827 29.630 0.00 0.00 0.00 2.83
526 527 9.787532 CTACATCAAAAAGTCTCTGAAAACAAA 57.212 29.630 0.00 0.00 0.00 2.83
527 528 8.466086 ACATCAAAAAGTCTCTGAAAACAAAC 57.534 30.769 0.00 0.00 0.00 2.93
528 529 7.273381 ACATCAAAAAGTCTCTGAAAACAAACG 59.727 33.333 0.00 0.00 0.00 3.60
529 530 5.571357 TCAAAAAGTCTCTGAAAACAAACGC 59.429 36.000 0.00 0.00 0.00 4.84
530 531 3.692791 AAGTCTCTGAAAACAAACGCC 57.307 42.857 0.00 0.00 0.00 5.68
531 532 1.947456 AGTCTCTGAAAACAAACGCCC 59.053 47.619 0.00 0.00 0.00 6.13
532 533 1.001706 GTCTCTGAAAACAAACGCCCC 60.002 52.381 0.00 0.00 0.00 5.80
533 534 0.313987 CTCTGAAAACAAACGCCCCC 59.686 55.000 0.00 0.00 0.00 5.40
534 535 0.106419 TCTGAAAACAAACGCCCCCT 60.106 50.000 0.00 0.00 0.00 4.79
535 536 0.750249 CTGAAAACAAACGCCCCCTT 59.250 50.000 0.00 0.00 0.00 3.95
536 537 1.957877 CTGAAAACAAACGCCCCCTTA 59.042 47.619 0.00 0.00 0.00 2.69
537 538 2.362717 CTGAAAACAAACGCCCCCTTAA 59.637 45.455 0.00 0.00 0.00 1.85
546 547 3.503800 ACGCCCCCTTAATTAATCTCC 57.496 47.619 0.00 0.00 0.00 3.71
550 551 3.767711 CCCCCTTAATTAATCTCCTGCC 58.232 50.000 0.00 0.00 0.00 4.85
552 553 4.387437 CCCCCTTAATTAATCTCCTGCCAA 60.387 45.833 0.00 0.00 0.00 4.52
569 570 5.702670 CCTGCCAAATATGATAGTACACTGG 59.297 44.000 0.00 0.00 0.00 4.00
588 589 1.636003 GGTTTGGATCCCTCCTTCAGT 59.364 52.381 9.90 0.00 42.59 3.41
595 596 0.764890 TCCCTCCTTCAGTGTGTTGG 59.235 55.000 0.00 0.00 0.00 3.77
599 600 3.139077 CCTCCTTCAGTGTGTTGGTAAC 58.861 50.000 0.00 0.00 0.00 2.50
600 601 3.181454 CCTCCTTCAGTGTGTTGGTAACT 60.181 47.826 0.00 0.00 37.61 2.24
601 602 4.058817 CTCCTTCAGTGTGTTGGTAACTC 58.941 47.826 0.00 0.00 37.61 3.01
602 603 3.709653 TCCTTCAGTGTGTTGGTAACTCT 59.290 43.478 0.00 0.00 37.61 3.24
603 604 3.809832 CCTTCAGTGTGTTGGTAACTCTG 59.190 47.826 0.00 0.00 37.61 3.35
606 607 3.069586 TCAGTGTGTTGGTAACTCTGAGG 59.930 47.826 9.85 0.00 33.39 3.86
611 612 2.037251 TGTTGGTAACTCTGAGGCAGTC 59.963 50.000 9.85 0.00 32.61 3.51
617 618 0.607620 ACTCTGAGGCAGTCTGAAGC 59.392 55.000 9.85 0.00 33.10 3.86
618 619 0.896923 CTCTGAGGCAGTCTGAAGCT 59.103 55.000 3.32 0.00 33.10 3.74
634 635 7.281100 AGTCTGAAGCTATTTTAATTCTTCGGG 59.719 37.037 16.90 10.89 39.41 5.14
635 636 6.038271 TCTGAAGCTATTTTAATTCTTCGGGC 59.962 38.462 16.90 0.00 39.41 6.13
636 637 4.813296 AGCTATTTTAATTCTTCGGGCG 57.187 40.909 0.00 0.00 0.00 6.13
637 638 4.448210 AGCTATTTTAATTCTTCGGGCGA 58.552 39.130 0.00 0.00 0.00 5.54
678 679 2.109126 CGCCTCCCTTACTGCAAGC 61.109 63.158 0.00 0.00 37.60 4.01
698 699 2.782163 CGCTTCAACAATCTCTGCATG 58.218 47.619 0.00 0.00 0.00 4.06
699 700 2.417586 CGCTTCAACAATCTCTGCATGA 59.582 45.455 0.00 0.00 0.00 3.07
702 703 4.798907 GCTTCAACAATCTCTGCATGAATG 59.201 41.667 0.00 0.00 35.07 2.67
723 724 2.099756 GCAGCCTGAGAAAAACAACTGT 59.900 45.455 0.00 0.00 0.00 3.55
757 762 3.356639 CTCGCCGTTGCTGCTCCTA 62.357 63.158 0.00 0.00 34.43 2.94
790 795 1.378911 TGCAGCCATGTCATCCACC 60.379 57.895 0.00 0.00 0.00 4.61
792 797 0.682209 GCAGCCATGTCATCCACCTT 60.682 55.000 0.00 0.00 0.00 3.50
794 799 0.257039 AGCCATGTCATCCACCTTCC 59.743 55.000 0.00 0.00 0.00 3.46
802 807 0.032813 CATCCACCTTCCCCAATGCT 60.033 55.000 0.00 0.00 0.00 3.79
806 811 0.251742 CACCTTCCCCAATGCTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
807 812 0.040204 ACCTTCCCCAATGCTCCAAG 59.960 55.000 0.00 0.00 0.00 3.61
808 813 0.685458 CCTTCCCCAATGCTCCAAGG 60.685 60.000 0.00 0.00 0.00 3.61
809 814 1.305213 TTCCCCAATGCTCCAAGGC 60.305 57.895 0.00 0.00 0.00 4.35
810 815 2.761213 CCCCAATGCTCCAAGGCC 60.761 66.667 0.00 0.00 0.00 5.19
811 816 2.761213 CCCAATGCTCCAAGGCCC 60.761 66.667 0.00 0.00 0.00 5.80
812 817 2.761213 CCAATGCTCCAAGGCCCC 60.761 66.667 0.00 0.00 0.00 5.80
813 818 2.037687 CAATGCTCCAAGGCCCCA 59.962 61.111 0.00 0.00 0.00 4.96
814 819 2.056223 CAATGCTCCAAGGCCCCAG 61.056 63.158 0.00 0.00 0.00 4.45
815 820 2.240918 AATGCTCCAAGGCCCCAGA 61.241 57.895 0.00 0.00 0.00 3.86
846 851 4.745620 GTGACTTGTCCTCTTGTAACTGTC 59.254 45.833 0.00 0.00 0.00 3.51
847 852 4.202223 TGACTTGTCCTCTTGTAACTGTCC 60.202 45.833 0.00 0.00 0.00 4.02
848 853 3.967987 ACTTGTCCTCTTGTAACTGTCCT 59.032 43.478 0.00 0.00 0.00 3.85
981 1783 3.272581 TCGAGTTTCCCGTGAAGTTTTT 58.727 40.909 0.00 0.00 0.00 1.94
1369 2222 3.755628 GGACCGCCTCTGCACGTA 61.756 66.667 0.00 0.00 37.32 3.57
1421 2274 2.169789 CGTCATGCTTGCTCCTCGG 61.170 63.158 0.00 0.00 0.00 4.63
1460 2313 2.020016 GCTGTATTGCGTGCGTCG 59.980 61.111 0.00 0.00 43.12 5.12
1648 2512 3.764434 GGAGGTGTAATGTCTCTCAGTCA 59.236 47.826 0.00 0.00 0.00 3.41
2123 3019 1.158434 GGCTATCTCCTCGTACTCCG 58.842 60.000 0.00 0.00 38.13 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.685148 GCTTTTAGATCAGCCTGGGG 58.315 55.000 0.00 0.00 0.00 4.96
13 14 4.114058 TGCATTTGGCTTTTAGATCAGC 57.886 40.909 0.00 0.00 45.15 4.26
14 15 4.974275 CGATGCATTTGGCTTTTAGATCAG 59.026 41.667 0.00 0.00 45.15 2.90
15 16 4.639755 TCGATGCATTTGGCTTTTAGATCA 59.360 37.500 0.00 0.00 45.15 2.92
16 17 4.972440 GTCGATGCATTTGGCTTTTAGATC 59.028 41.667 0.00 0.00 45.15 2.75
17 18 4.202050 GGTCGATGCATTTGGCTTTTAGAT 60.202 41.667 0.00 0.00 45.15 1.98
18 19 3.128589 GGTCGATGCATTTGGCTTTTAGA 59.871 43.478 0.00 0.00 45.15 2.10
19 20 3.119531 TGGTCGATGCATTTGGCTTTTAG 60.120 43.478 0.00 0.00 45.15 1.85
20 21 2.822561 TGGTCGATGCATTTGGCTTTTA 59.177 40.909 0.00 0.00 45.15 1.52
21 22 1.617850 TGGTCGATGCATTTGGCTTTT 59.382 42.857 0.00 0.00 45.15 2.27
22 23 1.255882 TGGTCGATGCATTTGGCTTT 58.744 45.000 0.00 0.00 45.15 3.51
23 24 1.255882 TTGGTCGATGCATTTGGCTT 58.744 45.000 0.00 0.00 45.15 4.35
24 25 1.477553 ATTGGTCGATGCATTTGGCT 58.522 45.000 0.00 0.00 45.15 4.75
25 26 3.648339 ATATTGGTCGATGCATTTGGC 57.352 42.857 0.00 0.00 45.13 4.52
26 27 6.205464 AGAGTAATATTGGTCGATGCATTTGG 59.795 38.462 0.00 0.00 0.00 3.28
27 28 7.073883 CAGAGTAATATTGGTCGATGCATTTG 58.926 38.462 0.00 0.00 0.00 2.32
28 29 6.205464 CCAGAGTAATATTGGTCGATGCATTT 59.795 38.462 0.00 0.00 0.00 2.32
29 30 5.702670 CCAGAGTAATATTGGTCGATGCATT 59.297 40.000 0.00 0.00 0.00 3.56
30 31 5.012046 TCCAGAGTAATATTGGTCGATGCAT 59.988 40.000 0.00 0.00 33.65 3.96
31 32 4.343814 TCCAGAGTAATATTGGTCGATGCA 59.656 41.667 0.00 0.00 33.65 3.96
32 33 4.883083 TCCAGAGTAATATTGGTCGATGC 58.117 43.478 0.00 0.00 33.65 3.91
33 34 4.926238 GCTCCAGAGTAATATTGGTCGATG 59.074 45.833 0.00 0.00 33.65 3.84
34 35 4.321304 CGCTCCAGAGTAATATTGGTCGAT 60.321 45.833 0.00 0.00 33.98 3.59
35 36 3.004419 CGCTCCAGAGTAATATTGGTCGA 59.996 47.826 0.00 0.00 33.98 4.20
36 37 3.004419 TCGCTCCAGAGTAATATTGGTCG 59.996 47.826 0.00 0.74 33.65 4.79
37 38 4.585955 TCGCTCCAGAGTAATATTGGTC 57.414 45.455 0.00 0.00 33.65 4.02
38 39 4.588951 TCATCGCTCCAGAGTAATATTGGT 59.411 41.667 0.00 0.00 33.65 3.67
39 40 5.139435 TCATCGCTCCAGAGTAATATTGG 57.861 43.478 0.00 0.00 0.00 3.16
40 41 5.514559 CGATCATCGCTCCAGAGTAATATTG 59.485 44.000 0.00 0.00 31.14 1.90
41 42 5.393569 CCGATCATCGCTCCAGAGTAATATT 60.394 44.000 0.00 0.00 38.82 1.28
42 43 4.097135 CCGATCATCGCTCCAGAGTAATAT 59.903 45.833 0.00 0.00 38.82 1.28
43 44 3.440522 CCGATCATCGCTCCAGAGTAATA 59.559 47.826 0.00 0.00 38.82 0.98
44 45 2.230025 CCGATCATCGCTCCAGAGTAAT 59.770 50.000 0.00 0.00 38.82 1.89
45 46 1.609072 CCGATCATCGCTCCAGAGTAA 59.391 52.381 0.00 0.00 38.82 2.24
46 47 1.239347 CCGATCATCGCTCCAGAGTA 58.761 55.000 0.00 0.00 38.82 2.59
47 48 1.459455 CCCGATCATCGCTCCAGAGT 61.459 60.000 0.00 0.00 38.82 3.24
48 49 1.288439 CCCGATCATCGCTCCAGAG 59.712 63.158 0.00 0.00 38.82 3.35
49 50 2.861101 GCCCGATCATCGCTCCAGA 61.861 63.158 0.00 0.00 38.82 3.86
50 51 2.356793 GCCCGATCATCGCTCCAG 60.357 66.667 0.00 0.00 38.82 3.86
51 52 4.284860 CGCCCGATCATCGCTCCA 62.285 66.667 0.00 0.00 38.82 3.86
52 53 3.905705 CTCGCCCGATCATCGCTCC 62.906 68.421 0.00 0.00 38.82 4.70
53 54 2.429907 CTCGCCCGATCATCGCTC 60.430 66.667 0.00 0.00 38.82 5.03
54 55 4.654412 GCTCGCCCGATCATCGCT 62.654 66.667 0.00 0.00 38.82 4.93
55 56 4.950062 TGCTCGCCCGATCATCGC 62.950 66.667 0.00 0.00 38.82 4.58
56 57 2.048784 ATGCTCGCCCGATCATCG 60.049 61.111 0.00 0.00 40.07 3.84
57 58 1.301244 ACATGCTCGCCCGATCATC 60.301 57.895 4.26 0.00 29.74 2.92
58 59 1.596203 CACATGCTCGCCCGATCAT 60.596 57.895 1.59 1.59 32.01 2.45
59 60 2.202919 CACATGCTCGCCCGATCA 60.203 61.111 0.00 0.00 0.00 2.92
60 61 2.969238 CCACATGCTCGCCCGATC 60.969 66.667 0.00 0.00 0.00 3.69
61 62 4.552365 CCCACATGCTCGCCCGAT 62.552 66.667 0.00 0.00 0.00 4.18
65 66 3.512516 GAAGCCCACATGCTCGCC 61.513 66.667 0.00 0.00 41.80 5.54
66 67 1.865788 TTTGAAGCCCACATGCTCGC 61.866 55.000 0.00 0.00 41.80 5.03
67 68 0.169672 CTTTGAAGCCCACATGCTCG 59.830 55.000 0.00 0.00 41.80 5.03
68 69 1.251251 ACTTTGAAGCCCACATGCTC 58.749 50.000 0.00 0.00 41.80 4.26
69 70 1.708341 AACTTTGAAGCCCACATGCT 58.292 45.000 0.00 0.00 45.43 3.79
70 71 2.137523 CAAACTTTGAAGCCCACATGC 58.862 47.619 0.00 0.00 0.00 4.06
71 72 3.731652 TCAAACTTTGAAGCCCACATG 57.268 42.857 1.47 0.00 36.59 3.21
81 82 5.013547 TGAGAAGTGGGTTTCAAACTTTGA 58.986 37.500 0.00 0.00 34.37 2.69
82 83 5.323371 TGAGAAGTGGGTTTCAAACTTTG 57.677 39.130 0.00 0.00 34.37 2.77
83 84 5.656416 TCATGAGAAGTGGGTTTCAAACTTT 59.344 36.000 0.00 0.00 34.37 2.66
84 85 5.067805 GTCATGAGAAGTGGGTTTCAAACTT 59.932 40.000 0.00 0.00 36.87 2.66
85 86 4.580580 GTCATGAGAAGTGGGTTTCAAACT 59.419 41.667 0.00 0.00 0.00 2.66
86 87 4.580580 AGTCATGAGAAGTGGGTTTCAAAC 59.419 41.667 0.00 0.00 0.00 2.93
87 88 4.580167 CAGTCATGAGAAGTGGGTTTCAAA 59.420 41.667 0.00 0.00 0.00 2.69
88 89 4.136796 CAGTCATGAGAAGTGGGTTTCAA 58.863 43.478 0.00 0.00 0.00 2.69
89 90 3.390967 TCAGTCATGAGAAGTGGGTTTCA 59.609 43.478 0.00 0.00 0.00 2.69
90 91 4.008074 TCAGTCATGAGAAGTGGGTTTC 57.992 45.455 0.00 0.00 0.00 2.78
91 92 4.137543 GTTCAGTCATGAGAAGTGGGTTT 58.862 43.478 0.00 0.00 36.61 3.27
92 93 3.392616 AGTTCAGTCATGAGAAGTGGGTT 59.607 43.478 0.00 0.00 36.61 4.11
93 94 2.975489 AGTTCAGTCATGAGAAGTGGGT 59.025 45.455 0.00 0.00 36.61 4.51
94 95 3.007290 TGAGTTCAGTCATGAGAAGTGGG 59.993 47.826 9.19 0.00 36.61 4.61
95 96 4.263018 TGAGTTCAGTCATGAGAAGTGG 57.737 45.455 9.19 0.00 36.61 4.00
96 97 4.450419 GGTTGAGTTCAGTCATGAGAAGTG 59.550 45.833 9.19 0.01 36.61 3.16
97 98 4.101585 TGGTTGAGTTCAGTCATGAGAAGT 59.898 41.667 0.00 0.00 36.61 3.01
98 99 4.450419 GTGGTTGAGTTCAGTCATGAGAAG 59.550 45.833 0.00 0.00 36.61 2.85
99 100 4.380531 GTGGTTGAGTTCAGTCATGAGAA 58.619 43.478 0.00 0.00 36.61 2.87
100 101 3.552890 CGTGGTTGAGTTCAGTCATGAGA 60.553 47.826 0.00 0.00 36.61 3.27
101 102 2.733552 CGTGGTTGAGTTCAGTCATGAG 59.266 50.000 0.00 0.00 36.61 2.90
102 103 2.102420 ACGTGGTTGAGTTCAGTCATGA 59.898 45.455 0.00 0.00 0.00 3.07
103 104 2.483876 ACGTGGTTGAGTTCAGTCATG 58.516 47.619 0.00 0.00 0.00 3.07
104 105 2.910688 ACGTGGTTGAGTTCAGTCAT 57.089 45.000 0.00 0.00 0.00 3.06
105 106 2.684001 AACGTGGTTGAGTTCAGTCA 57.316 45.000 0.00 0.00 0.00 3.41
106 107 4.569564 AGTTTAACGTGGTTGAGTTCAGTC 59.430 41.667 0.00 0.00 0.00 3.51
107 108 4.331717 CAGTTTAACGTGGTTGAGTTCAGT 59.668 41.667 0.00 0.00 0.00 3.41
108 109 4.785341 GCAGTTTAACGTGGTTGAGTTCAG 60.785 45.833 0.00 0.00 0.00 3.02
109 110 3.064271 GCAGTTTAACGTGGTTGAGTTCA 59.936 43.478 0.00 0.00 0.00 3.18
110 111 3.614588 GCAGTTTAACGTGGTTGAGTTC 58.385 45.455 0.00 0.00 0.00 3.01
111 112 2.031191 CGCAGTTTAACGTGGTTGAGTT 59.969 45.455 0.00 0.00 0.00 3.01
112 113 1.595794 CGCAGTTTAACGTGGTTGAGT 59.404 47.619 0.00 0.00 0.00 3.41
113 114 1.659211 GCGCAGTTTAACGTGGTTGAG 60.659 52.381 0.30 0.00 0.00 3.02
114 115 0.305313 GCGCAGTTTAACGTGGTTGA 59.695 50.000 0.30 0.00 0.00 3.18
115 116 0.028242 TGCGCAGTTTAACGTGGTTG 59.972 50.000 5.66 0.00 0.00 3.77
116 117 0.948678 ATGCGCAGTTTAACGTGGTT 59.051 45.000 18.32 0.00 0.00 3.67
117 118 0.515564 GATGCGCAGTTTAACGTGGT 59.484 50.000 18.32 0.00 0.00 4.16
118 119 0.796312 AGATGCGCAGTTTAACGTGG 59.204 50.000 18.32 0.00 0.00 4.94
119 120 1.726791 AGAGATGCGCAGTTTAACGTG 59.273 47.619 18.32 0.00 0.00 4.49
120 121 2.080286 AGAGATGCGCAGTTTAACGT 57.920 45.000 18.32 0.00 0.00 3.99
121 122 3.240861 GTCTAGAGATGCGCAGTTTAACG 59.759 47.826 18.32 1.37 0.00 3.18
122 123 4.425520 AGTCTAGAGATGCGCAGTTTAAC 58.574 43.478 18.32 8.07 0.00 2.01
123 124 4.720649 AGTCTAGAGATGCGCAGTTTAA 57.279 40.909 18.32 0.00 0.00 1.52
124 125 4.720649 AAGTCTAGAGATGCGCAGTTTA 57.279 40.909 18.32 4.41 0.00 2.01
125 126 3.601443 AAGTCTAGAGATGCGCAGTTT 57.399 42.857 18.32 3.03 0.00 2.66
126 127 3.067461 CCTAAGTCTAGAGATGCGCAGTT 59.933 47.826 18.32 6.12 0.00 3.16
127 128 2.621055 CCTAAGTCTAGAGATGCGCAGT 59.379 50.000 18.32 5.26 0.00 4.40
128 129 2.606795 GCCTAAGTCTAGAGATGCGCAG 60.607 54.545 18.32 0.00 0.00 5.18
129 130 1.338337 GCCTAAGTCTAGAGATGCGCA 59.662 52.381 14.96 14.96 0.00 6.09
130 131 1.611491 AGCCTAAGTCTAGAGATGCGC 59.389 52.381 0.00 0.00 0.00 6.09
131 132 3.058293 CAGAGCCTAAGTCTAGAGATGCG 60.058 52.174 0.00 0.00 0.00 4.73
132 133 3.888930 ACAGAGCCTAAGTCTAGAGATGC 59.111 47.826 0.00 0.00 0.00 3.91
133 134 6.272318 CAAACAGAGCCTAAGTCTAGAGATG 58.728 44.000 0.00 0.00 0.00 2.90
134 135 5.362430 CCAAACAGAGCCTAAGTCTAGAGAT 59.638 44.000 0.00 0.00 0.00 2.75
135 136 4.707448 CCAAACAGAGCCTAAGTCTAGAGA 59.293 45.833 0.00 0.00 0.00 3.10
136 137 4.464597 ACCAAACAGAGCCTAAGTCTAGAG 59.535 45.833 0.00 0.00 0.00 2.43
137 138 4.417437 ACCAAACAGAGCCTAAGTCTAGA 58.583 43.478 0.00 0.00 0.00 2.43
138 139 4.810191 ACCAAACAGAGCCTAAGTCTAG 57.190 45.455 0.00 0.00 0.00 2.43
139 140 4.591498 TGAACCAAACAGAGCCTAAGTCTA 59.409 41.667 0.00 0.00 0.00 2.59
140 141 3.391296 TGAACCAAACAGAGCCTAAGTCT 59.609 43.478 0.00 0.00 0.00 3.24
141 142 3.740115 TGAACCAAACAGAGCCTAAGTC 58.260 45.455 0.00 0.00 0.00 3.01
142 143 3.857157 TGAACCAAACAGAGCCTAAGT 57.143 42.857 0.00 0.00 0.00 2.24
143 144 5.940470 ACTTATGAACCAAACAGAGCCTAAG 59.060 40.000 0.00 0.00 0.00 2.18
144 145 5.876357 ACTTATGAACCAAACAGAGCCTAA 58.124 37.500 0.00 0.00 0.00 2.69
145 146 5.248477 AGACTTATGAACCAAACAGAGCCTA 59.752 40.000 0.00 0.00 0.00 3.93
146 147 4.042187 AGACTTATGAACCAAACAGAGCCT 59.958 41.667 0.00 0.00 0.00 4.58
147 148 4.327680 AGACTTATGAACCAAACAGAGCC 58.672 43.478 0.00 0.00 0.00 4.70
148 149 5.948992 AAGACTTATGAACCAAACAGAGC 57.051 39.130 0.00 0.00 0.00 4.09
149 150 8.713271 GTCTTAAGACTTATGAACCAAACAGAG 58.287 37.037 25.30 0.00 41.65 3.35
150 151 8.603242 GTCTTAAGACTTATGAACCAAACAGA 57.397 34.615 25.30 0.00 41.65 3.41
224 225 7.320399 ACTTTTTAGTCCCTGAAAACAAACAG 58.680 34.615 0.00 0.00 28.65 3.16
225 226 7.234661 ACTTTTTAGTCCCTGAAAACAAACA 57.765 32.000 0.00 0.00 28.65 2.83
226 227 7.751047 GACTTTTTAGTCCCTGAAAACAAAC 57.249 36.000 0.00 0.00 32.97 2.93
239 240 4.161942 GGAGGGACTAGGGACTTTTTAGTC 59.838 50.000 0.00 3.01 41.55 2.59
240 241 4.102598 GGAGGGACTAGGGACTTTTTAGT 58.897 47.826 0.00 0.00 41.55 2.24
241 242 3.132467 CGGAGGGACTAGGGACTTTTTAG 59.868 52.174 0.00 0.00 41.55 1.85
242 243 3.102204 CGGAGGGACTAGGGACTTTTTA 58.898 50.000 0.00 0.00 41.55 1.52
243 244 1.907255 CGGAGGGACTAGGGACTTTTT 59.093 52.381 0.00 0.00 41.55 1.94
244 245 1.203275 ACGGAGGGACTAGGGACTTTT 60.203 52.381 0.00 0.00 41.55 2.27
245 246 0.412640 ACGGAGGGACTAGGGACTTT 59.587 55.000 0.00 0.00 41.55 2.66
246 247 1.302907 TACGGAGGGACTAGGGACTT 58.697 55.000 0.00 0.00 41.55 3.01
247 248 1.302907 TTACGGAGGGACTAGGGACT 58.697 55.000 0.00 0.00 41.55 3.85
248 249 2.030371 CTTTACGGAGGGACTAGGGAC 58.970 57.143 0.00 0.00 41.55 4.46
249 250 1.063417 CCTTTACGGAGGGACTAGGGA 60.063 57.143 0.00 0.00 41.55 4.20
250 251 1.342774 ACCTTTACGGAGGGACTAGGG 60.343 57.143 6.69 0.00 41.55 3.53
251 252 2.156102 ACCTTTACGGAGGGACTAGG 57.844 55.000 6.69 0.00 41.55 3.02
252 253 6.966534 TTATAACCTTTACGGAGGGACTAG 57.033 41.667 6.69 0.00 41.55 2.57
253 254 7.732222 TTTTATAACCTTTACGGAGGGACTA 57.268 36.000 6.69 0.00 41.55 2.59
255 256 7.172190 GCTATTTTATAACCTTTACGGAGGGAC 59.828 40.741 6.69 0.00 41.31 4.46
256 257 7.219322 GCTATTTTATAACCTTTACGGAGGGA 58.781 38.462 6.69 0.00 41.31 4.20
257 258 6.429078 GGCTATTTTATAACCTTTACGGAGGG 59.571 42.308 6.69 0.00 41.31 4.30
258 259 6.993902 TGGCTATTTTATAACCTTTACGGAGG 59.006 38.462 0.78 0.78 42.75 4.30
259 260 8.504005 CATGGCTATTTTATAACCTTTACGGAG 58.496 37.037 0.00 0.00 36.31 4.63
260 261 7.994334 ACATGGCTATTTTATAACCTTTACGGA 59.006 33.333 0.00 0.00 36.31 4.69
261 262 8.161699 ACATGGCTATTTTATAACCTTTACGG 57.838 34.615 0.00 0.00 39.35 4.02
266 267 9.350951 GGAGTAACATGGCTATTTTATAACCTT 57.649 33.333 0.00 0.00 0.00 3.50
267 268 8.724310 AGGAGTAACATGGCTATTTTATAACCT 58.276 33.333 0.00 0.56 0.00 3.50
268 269 8.784043 CAGGAGTAACATGGCTATTTTATAACC 58.216 37.037 0.00 0.00 0.00 2.85
269 270 8.784043 CCAGGAGTAACATGGCTATTTTATAAC 58.216 37.037 0.00 0.00 43.46 1.89
270 271 8.918202 CCAGGAGTAACATGGCTATTTTATAA 57.082 34.615 0.00 0.00 43.46 0.98
304 305 9.874205 CCTATGGTGTTGATTGATTGTTATTTT 57.126 29.630 0.00 0.00 0.00 1.82
305 306 8.477256 CCCTATGGTGTTGATTGATTGTTATTT 58.523 33.333 0.00 0.00 0.00 1.40
306 307 7.619302 ACCCTATGGTGTTGATTGATTGTTATT 59.381 33.333 0.00 0.00 45.58 1.40
307 308 7.125391 ACCCTATGGTGTTGATTGATTGTTAT 58.875 34.615 0.00 0.00 45.58 1.89
308 309 6.489603 ACCCTATGGTGTTGATTGATTGTTA 58.510 36.000 0.00 0.00 45.58 2.41
309 310 5.332743 ACCCTATGGTGTTGATTGATTGTT 58.667 37.500 0.00 0.00 45.58 2.83
310 311 4.934356 ACCCTATGGTGTTGATTGATTGT 58.066 39.130 0.00 0.00 45.58 2.71
334 335 3.142838 ATGCACTCATTGGCCCGC 61.143 61.111 0.00 0.00 0.00 6.13
335 336 2.777972 CCATGCACTCATTGGCCCG 61.778 63.158 0.00 0.00 0.00 6.13
336 337 1.380246 TCCATGCACTCATTGGCCC 60.380 57.895 0.00 0.00 0.00 5.80
337 338 1.389609 CCTCCATGCACTCATTGGCC 61.390 60.000 0.00 0.00 0.00 5.36
338 339 1.389609 CCCTCCATGCACTCATTGGC 61.390 60.000 0.00 0.00 0.00 4.52
339 340 0.754217 CCCCTCCATGCACTCATTGG 60.754 60.000 0.00 0.00 0.00 3.16
340 341 1.389609 GCCCCTCCATGCACTCATTG 61.390 60.000 0.00 0.00 0.00 2.82
341 342 1.076485 GCCCCTCCATGCACTCATT 60.076 57.895 0.00 0.00 0.00 2.57
342 343 1.652187 ATGCCCCTCCATGCACTCAT 61.652 55.000 0.00 0.00 40.88 2.90
343 344 1.866483 AATGCCCCTCCATGCACTCA 61.866 55.000 0.00 0.00 40.88 3.41
344 345 1.076485 AATGCCCCTCCATGCACTC 60.076 57.895 0.00 0.00 40.88 3.51
345 346 1.380785 CAATGCCCCTCCATGCACT 60.381 57.895 0.00 0.00 40.88 4.40
346 347 3.085119 GCAATGCCCCTCCATGCAC 62.085 63.158 0.00 0.00 40.88 4.57
347 348 2.760799 GCAATGCCCCTCCATGCA 60.761 61.111 0.00 0.00 42.52 3.96
348 349 2.443390 AGCAATGCCCCTCCATGC 60.443 61.111 0.00 0.00 0.00 4.06
349 350 2.131709 CCAGCAATGCCCCTCCATG 61.132 63.158 0.00 0.00 0.00 3.66
350 351 1.877672 TTCCAGCAATGCCCCTCCAT 61.878 55.000 0.00 0.00 0.00 3.41
351 352 2.091640 TTTCCAGCAATGCCCCTCCA 62.092 55.000 0.00 0.00 0.00 3.86
352 353 0.904394 TTTTCCAGCAATGCCCCTCC 60.904 55.000 0.00 0.00 0.00 4.30
353 354 0.533951 CTTTTCCAGCAATGCCCCTC 59.466 55.000 0.00 0.00 0.00 4.30
354 355 0.178924 ACTTTTCCAGCAATGCCCCT 60.179 50.000 0.00 0.00 0.00 4.79
355 356 0.247460 GACTTTTCCAGCAATGCCCC 59.753 55.000 0.00 0.00 0.00 5.80
356 357 0.247460 GGACTTTTCCAGCAATGCCC 59.753 55.000 0.00 0.00 42.30 5.36
357 358 0.247460 GGGACTTTTCCAGCAATGCC 59.753 55.000 0.00 0.00 44.98 4.40
358 359 0.968405 TGGGACTTTTCCAGCAATGC 59.032 50.000 0.00 0.00 44.98 3.56
359 360 3.749665 TTTGGGACTTTTCCAGCAATG 57.250 42.857 0.00 0.00 44.98 2.82
360 361 4.164030 ACTTTTTGGGACTTTTCCAGCAAT 59.836 37.500 0.00 0.00 44.98 3.56
361 362 3.517500 ACTTTTTGGGACTTTTCCAGCAA 59.482 39.130 0.00 0.00 44.98 3.91
362 363 3.103742 ACTTTTTGGGACTTTTCCAGCA 58.896 40.909 0.00 0.00 44.98 4.41
363 364 3.492656 GGACTTTTTGGGACTTTTCCAGC 60.493 47.826 0.00 0.00 44.98 4.85
364 365 3.704061 TGGACTTTTTGGGACTTTTCCAG 59.296 43.478 0.00 0.00 44.98 3.86
365 366 3.714144 TGGACTTTTTGGGACTTTTCCA 58.286 40.909 0.00 0.00 44.98 3.53
366 367 4.746535 TTGGACTTTTTGGGACTTTTCC 57.253 40.909 0.00 0.00 41.95 3.13
393 394 7.961325 ATGAAGAAGACTCTCAAGAAAAGTC 57.039 36.000 0.00 0.00 39.76 3.01
394 395 8.744568 AAATGAAGAAGACTCTCAAGAAAAGT 57.255 30.769 0.00 0.00 0.00 2.66
398 399 9.442047 GGATTAAATGAAGAAGACTCTCAAGAA 57.558 33.333 0.00 0.00 0.00 2.52
399 400 8.820831 AGGATTAAATGAAGAAGACTCTCAAGA 58.179 33.333 0.00 0.00 0.00 3.02
439 440 7.456902 ACAAACAGGAAAGACTATTAGGGACTA 59.543 37.037 0.00 0.00 41.75 2.59
440 441 6.272558 ACAAACAGGAAAGACTATTAGGGACT 59.727 38.462 0.00 0.00 46.37 3.85
441 442 6.473758 ACAAACAGGAAAGACTATTAGGGAC 58.526 40.000 0.00 0.00 0.00 4.46
442 443 6.697641 ACAAACAGGAAAGACTATTAGGGA 57.302 37.500 0.00 0.00 0.00 4.20
443 444 7.761038 AAACAAACAGGAAAGACTATTAGGG 57.239 36.000 0.00 0.00 0.00 3.53
450 451 8.803235 AGACTTTTTAAACAAACAGGAAAGACT 58.197 29.630 0.00 0.00 0.00 3.24
451 452 8.981724 AGACTTTTTAAACAAACAGGAAAGAC 57.018 30.769 0.00 0.00 0.00 3.01
452 453 9.990360 AAAGACTTTTTAAACAAACAGGAAAGA 57.010 25.926 0.00 0.00 0.00 2.52
490 491 9.915629 GAGACTTTTTGATGTAGAGACTAGAAA 57.084 33.333 0.00 0.00 0.00 2.52
491 492 9.303116 AGAGACTTTTTGATGTAGAGACTAGAA 57.697 33.333 0.00 0.00 0.00 2.10
492 493 8.735315 CAGAGACTTTTTGATGTAGAGACTAGA 58.265 37.037 0.00 0.00 0.00 2.43
493 494 8.735315 TCAGAGACTTTTTGATGTAGAGACTAG 58.265 37.037 0.00 0.00 0.00 2.57
494 495 8.637196 TCAGAGACTTTTTGATGTAGAGACTA 57.363 34.615 0.00 0.00 0.00 2.59
495 496 7.531857 TCAGAGACTTTTTGATGTAGAGACT 57.468 36.000 0.00 0.00 0.00 3.24
496 497 8.594881 TTTCAGAGACTTTTTGATGTAGAGAC 57.405 34.615 0.00 0.00 0.00 3.36
497 498 9.046296 GTTTTCAGAGACTTTTTGATGTAGAGA 57.954 33.333 0.00 0.00 0.00 3.10
498 499 8.830580 TGTTTTCAGAGACTTTTTGATGTAGAG 58.169 33.333 0.00 0.00 0.00 2.43
499 500 8.731275 TGTTTTCAGAGACTTTTTGATGTAGA 57.269 30.769 0.00 0.00 0.00 2.59
500 501 9.787532 TTTGTTTTCAGAGACTTTTTGATGTAG 57.212 29.630 0.00 0.00 0.00 2.74
501 502 9.567848 GTTTGTTTTCAGAGACTTTTTGATGTA 57.432 29.630 0.00 0.00 0.00 2.29
502 503 7.273381 CGTTTGTTTTCAGAGACTTTTTGATGT 59.727 33.333 0.00 0.00 0.00 3.06
503 504 7.603515 CGTTTGTTTTCAGAGACTTTTTGATG 58.396 34.615 0.00 0.00 0.00 3.07
504 505 6.253512 GCGTTTGTTTTCAGAGACTTTTTGAT 59.746 34.615 0.00 0.00 0.00 2.57
505 506 5.571357 GCGTTTGTTTTCAGAGACTTTTTGA 59.429 36.000 0.00 0.00 0.00 2.69
506 507 5.220209 GGCGTTTGTTTTCAGAGACTTTTTG 60.220 40.000 0.00 0.00 0.00 2.44
507 508 4.862574 GGCGTTTGTTTTCAGAGACTTTTT 59.137 37.500 0.00 0.00 0.00 1.94
508 509 4.421058 GGCGTTTGTTTTCAGAGACTTTT 58.579 39.130 0.00 0.00 0.00 2.27
509 510 3.181490 GGGCGTTTGTTTTCAGAGACTTT 60.181 43.478 0.00 0.00 0.00 2.66
510 511 2.357952 GGGCGTTTGTTTTCAGAGACTT 59.642 45.455 0.00 0.00 0.00 3.01
511 512 1.947456 GGGCGTTTGTTTTCAGAGACT 59.053 47.619 0.00 0.00 0.00 3.24
512 513 1.001706 GGGGCGTTTGTTTTCAGAGAC 60.002 52.381 0.00 0.00 0.00 3.36
513 514 1.314730 GGGGCGTTTGTTTTCAGAGA 58.685 50.000 0.00 0.00 0.00 3.10
514 515 0.313987 GGGGGCGTTTGTTTTCAGAG 59.686 55.000 0.00 0.00 0.00 3.35
515 516 0.106419 AGGGGGCGTTTGTTTTCAGA 60.106 50.000 0.00 0.00 0.00 3.27
516 517 0.750249 AAGGGGGCGTTTGTTTTCAG 59.250 50.000 0.00 0.00 0.00 3.02
517 518 2.068834 TAAGGGGGCGTTTGTTTTCA 57.931 45.000 0.00 0.00 0.00 2.69
518 519 3.671008 ATTAAGGGGGCGTTTGTTTTC 57.329 42.857 0.00 0.00 0.00 2.29
519 520 5.548181 TTAATTAAGGGGGCGTTTGTTTT 57.452 34.783 0.00 0.00 0.00 2.43
520 521 5.482526 AGATTAATTAAGGGGGCGTTTGTTT 59.517 36.000 3.94 0.00 0.00 2.83
521 522 5.020795 AGATTAATTAAGGGGGCGTTTGTT 58.979 37.500 3.94 0.00 0.00 2.83
522 523 4.606210 AGATTAATTAAGGGGGCGTTTGT 58.394 39.130 3.94 0.00 0.00 2.83
523 524 4.037565 GGAGATTAATTAAGGGGGCGTTTG 59.962 45.833 3.94 0.00 0.00 2.93
524 525 4.079385 AGGAGATTAATTAAGGGGGCGTTT 60.079 41.667 3.94 0.00 0.00 3.60
525 526 3.462205 AGGAGATTAATTAAGGGGGCGTT 59.538 43.478 3.94 0.00 0.00 4.84
526 527 3.053826 AGGAGATTAATTAAGGGGGCGT 58.946 45.455 3.94 0.00 0.00 5.68
527 528 3.412386 CAGGAGATTAATTAAGGGGGCG 58.588 50.000 3.94 0.00 0.00 6.13
528 529 3.157881 GCAGGAGATTAATTAAGGGGGC 58.842 50.000 3.94 0.00 0.00 5.80
529 530 3.140144 TGGCAGGAGATTAATTAAGGGGG 59.860 47.826 3.94 0.00 0.00 5.40
530 531 4.453480 TGGCAGGAGATTAATTAAGGGG 57.547 45.455 3.94 0.00 0.00 4.79
531 532 6.983906 ATTTGGCAGGAGATTAATTAAGGG 57.016 37.500 3.94 0.00 0.00 3.95
532 533 9.300681 TCATATTTGGCAGGAGATTAATTAAGG 57.699 33.333 3.94 0.00 0.00 2.69
546 547 6.291377 ACCAGTGTACTATCATATTTGGCAG 58.709 40.000 0.00 0.00 0.00 4.85
550 551 8.731275 TCCAAACCAGTGTACTATCATATTTG 57.269 34.615 0.00 0.00 0.00 2.32
552 553 8.157476 GGATCCAAACCAGTGTACTATCATATT 58.843 37.037 6.95 0.00 0.00 1.28
569 570 2.040412 ACACTGAAGGAGGGATCCAAAC 59.960 50.000 15.23 2.14 0.00 2.93
588 589 1.765904 TGCCTCAGAGTTACCAACACA 59.234 47.619 0.00 0.00 0.00 3.72
595 596 3.843999 CTTCAGACTGCCTCAGAGTTAC 58.156 50.000 0.00 0.00 35.18 2.50
599 600 0.896923 AGCTTCAGACTGCCTCAGAG 59.103 55.000 0.00 0.00 35.18 3.35
600 601 2.222227 TAGCTTCAGACTGCCTCAGA 57.778 50.000 0.00 0.00 35.18 3.27
601 602 3.540314 AATAGCTTCAGACTGCCTCAG 57.460 47.619 0.00 0.00 37.52 3.35
602 603 3.988976 AAATAGCTTCAGACTGCCTCA 57.011 42.857 0.00 0.00 0.00 3.86
603 604 6.934048 ATTAAAATAGCTTCAGACTGCCTC 57.066 37.500 0.00 0.00 0.00 4.70
606 607 7.637907 CGAAGAATTAAAATAGCTTCAGACTGC 59.362 37.037 0.00 0.00 35.82 4.40
611 612 6.202226 GCCCGAAGAATTAAAATAGCTTCAG 58.798 40.000 0.00 6.70 35.82 3.02
617 618 4.272504 TGCTCGCCCGAAGAATTAAAATAG 59.727 41.667 0.00 0.00 0.00 1.73
618 619 4.193090 TGCTCGCCCGAAGAATTAAAATA 58.807 39.130 0.00 0.00 0.00 1.40
650 651 0.109342 AAGGGAGGCGCTATCATTGG 59.891 55.000 7.64 0.00 0.00 3.16
678 679 2.417586 TCATGCAGAGATTGTTGAAGCG 59.582 45.455 0.00 0.00 0.00 4.68
698 699 3.648339 TGTTTTTCTCAGGCTGCATTC 57.352 42.857 10.34 0.00 0.00 2.67
699 700 3.385755 AGTTGTTTTTCTCAGGCTGCATT 59.614 39.130 10.34 0.00 0.00 3.56
702 703 2.099756 ACAGTTGTTTTTCTCAGGCTGC 59.900 45.455 10.34 0.00 0.00 5.25
705 706 5.751243 TTCTACAGTTGTTTTTCTCAGGC 57.249 39.130 0.00 0.00 0.00 4.85
712 713 4.532834 TGGGAGCTTCTACAGTTGTTTTT 58.467 39.130 0.00 0.00 0.00 1.94
723 724 1.204941 GCGAGTTTCTGGGAGCTTCTA 59.795 52.381 0.00 0.00 0.00 2.10
768 773 1.134310 TGGATGACATGGCTGCAGTAG 60.134 52.381 16.64 5.48 0.00 2.57
777 782 0.106519 GGGGAAGGTGGATGACATGG 60.107 60.000 0.00 0.00 0.00 3.66
790 795 1.325476 GCCTTGGAGCATTGGGGAAG 61.325 60.000 0.00 0.00 0.00 3.46
792 797 2.360191 GCCTTGGAGCATTGGGGA 59.640 61.111 0.00 0.00 0.00 4.81
794 799 2.761213 GGGCCTTGGAGCATTGGG 60.761 66.667 0.84 0.00 0.00 4.12
802 807 0.474854 TACAGTTCTGGGGCCTTGGA 60.475 55.000 0.84 0.00 0.00 3.53
806 811 1.535687 ACGTACAGTTCTGGGGCCT 60.536 57.895 0.84 0.00 0.00 5.19
807 812 1.375523 CACGTACAGTTCTGGGGCC 60.376 63.158 0.00 0.00 0.00 5.80
808 813 0.669625 GTCACGTACAGTTCTGGGGC 60.670 60.000 4.82 0.00 0.00 5.80
809 814 0.966920 AGTCACGTACAGTTCTGGGG 59.033 55.000 4.82 0.00 0.00 4.96
810 815 2.223971 ACAAGTCACGTACAGTTCTGGG 60.224 50.000 4.82 0.00 0.00 4.45
811 816 3.050619 GACAAGTCACGTACAGTTCTGG 58.949 50.000 4.82 0.00 0.00 3.86
812 817 3.050619 GGACAAGTCACGTACAGTTCTG 58.949 50.000 2.29 0.00 0.00 3.02
813 818 2.957006 AGGACAAGTCACGTACAGTTCT 59.043 45.455 2.29 0.00 0.00 3.01
814 819 3.004524 AGAGGACAAGTCACGTACAGTTC 59.995 47.826 2.29 0.00 0.00 3.01
815 820 2.957006 AGAGGACAAGTCACGTACAGTT 59.043 45.455 2.29 0.00 0.00 3.16
981 1783 2.905959 TTCGATTACTCGCGAACTCA 57.094 45.000 11.33 0.00 44.65 3.41
1369 2222 0.234884 CGCGGCGAGTTTCTTTTCTT 59.765 50.000 19.16 0.00 0.00 2.52
1460 2313 0.179936 CCTCTCCTTGTGGATCCTGC 59.820 60.000 14.23 6.63 42.29 4.85
1634 2498 0.247736 GGGCGTGACTGAGAGACATT 59.752 55.000 0.00 0.00 0.00 2.71
1640 2504 2.626780 CGTGAGGGCGTGACTGAGA 61.627 63.158 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.