Multiple sequence alignment - TraesCS1A01G058800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G058800 chr1A 100.000 3431 0 0 1 3431 39638187 39634757 0.000000e+00 6336.0
1 TraesCS1A01G058800 chr1A 99.237 131 1 0 1 131 57736307 57736177 1.590000e-58 237.0
2 TraesCS1A01G058800 chr1D 93.546 2789 134 15 181 2939 40001612 39998840 0.000000e+00 4111.0
3 TraesCS1A01G058800 chr1D 87.661 389 36 7 2087 2473 40007609 40007987 3.140000e-120 442.0
4 TraesCS1A01G058800 chr1D 81.529 157 18 7 181 333 6406568 6406419 6.010000e-23 119.0
5 TraesCS1A01G058800 chr1D 100.000 34 0 0 151 184 40001660 40001627 2.860000e-06 63.9
6 TraesCS1A01G058800 chr1B 90.481 1807 93 32 646 2431 59634010 59635758 0.000000e+00 2311.0
7 TraesCS1A01G058800 chr2D 96.130 491 18 1 2940 3429 360555299 360554809 0.000000e+00 800.0
8 TraesCS1A01G058800 chr2D 95.927 491 19 1 2940 3429 574117428 574116938 0.000000e+00 795.0
9 TraesCS1A01G058800 chr2D 94.908 491 24 1 2940 3429 618073815 618073325 0.000000e+00 767.0
10 TraesCS1A01G058800 chr2D 90.370 135 13 0 505 639 562307814 562307948 9.780000e-41 178.0
11 TraesCS1A01G058800 chr3A 95.732 492 21 0 2940 3431 437665390 437664899 0.000000e+00 793.0
12 TraesCS1A01G058800 chr5D 95.723 491 20 1 2940 3429 393750453 393750943 0.000000e+00 789.0
13 TraesCS1A01G058800 chr5D 81.646 158 17 8 181 333 138810633 138810783 1.670000e-23 121.0
14 TraesCS1A01G058800 chr3D 95.519 491 21 1 2940 3429 578666281 578666771 0.000000e+00 784.0
15 TraesCS1A01G058800 chr6D 94.726 493 24 2 2940 3431 301812291 301812782 0.000000e+00 765.0
16 TraesCS1A01G058800 chr6D 94.705 491 25 1 2940 3429 429906239 429906729 0.000000e+00 761.0
17 TraesCS1A01G058800 chr5A 94.309 492 28 0 2940 3431 634057272 634056781 0.000000e+00 754.0
18 TraesCS1A01G058800 chr5A 74.580 476 72 31 181 637 659423389 659422944 2.740000e-36 163.0
19 TraesCS1A01G058800 chr7A 81.184 760 126 12 1312 2067 444793284 444792538 2.280000e-166 595.0
20 TraesCS1A01G058800 chr7A 83.140 344 58 0 1313 1656 443964812 443964469 7.150000e-82 315.0
21 TraesCS1A01G058800 chr7A 97.692 130 3 0 1 130 673064551 673064422 1.240000e-54 224.0
22 TraesCS1A01G058800 chr7A 87.218 133 16 1 505 637 164810707 164810576 2.130000e-32 150.0
23 TraesCS1A01G058800 chr7A 80.892 157 19 7 181 333 19300575 19300724 2.800000e-21 113.0
24 TraesCS1A01G058800 chr7B 79.925 797 143 13 1275 2067 388954608 388953825 1.380000e-158 569.0
25 TraesCS1A01G058800 chr7B 79.793 772 127 23 1312 2067 63170810 63171568 5.040000e-148 534.0
26 TraesCS1A01G058800 chr7B 84.682 346 49 4 1313 1656 388597592 388597249 3.280000e-90 342.0
27 TraesCS1A01G058800 chr7B 99.219 128 1 0 3 130 692707867 692707740 7.400000e-57 231.0
28 TraesCS1A01G058800 chr7B 81.529 157 18 7 181 333 659930512 659930661 6.010000e-23 119.0
29 TraesCS1A01G058800 chr7D 80.526 760 131 13 1312 2067 392746467 392745721 4.970000e-158 568.0
30 TraesCS1A01G058800 chr7D 80.466 773 120 25 1312 2067 104749065 104748307 2.310000e-156 562.0
31 TraesCS1A01G058800 chr7D 85.294 136 20 0 504 639 587112408 587112273 1.280000e-29 141.0
32 TraesCS1A01G058800 chr7D 80.892 157 19 7 181 333 630512903 630512754 2.800000e-21 113.0
33 TraesCS1A01G058800 chr2B 84.348 345 54 0 1322 1666 784718461 784718117 4.240000e-89 339.0
34 TraesCS1A01G058800 chr2B 99.231 130 1 0 1 130 621186929 621187058 5.720000e-58 235.0
35 TraesCS1A01G058800 chr2B 92.623 122 9 0 502 623 1757052 1757173 3.520000e-40 176.0
36 TraesCS1A01G058800 chr2B 92.623 122 9 0 502 623 1772314 1772435 3.520000e-40 176.0
37 TraesCS1A01G058800 chr2B 80.892 157 19 7 181 333 406538846 406538697 2.800000e-21 113.0
38 TraesCS1A01G058800 chr5B 99.237 131 1 0 1 131 453671681 453671811 1.590000e-58 237.0
39 TraesCS1A01G058800 chr5B 87.500 136 16 1 502 637 429885740 429885874 4.580000e-34 156.0
40 TraesCS1A01G058800 chr4A 98.462 130 2 0 1 130 677752448 677752319 2.660000e-56 230.0
41 TraesCS1A01G058800 chr4A 93.182 132 7 2 1 131 191410082 191409952 3.490000e-45 193.0
42 TraesCS1A01G058800 chr3B 92.424 132 9 1 1 131 788908310 788908179 1.630000e-43 187.0
43 TraesCS1A01G058800 chr6A 91.473 129 10 1 1 129 426261611 426261738 3.520000e-40 176.0
44 TraesCS1A01G058800 chr4D 81.529 157 18 7 181 333 494070462 494070313 6.010000e-23 119.0
45 TraesCS1A01G058800 chr2A 80.892 157 19 7 181 333 770918688 770918539 2.800000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G058800 chr1A 39634757 39638187 3430 True 6336.00 6336 100.000 1 3431 1 chr1A.!!$R1 3430
1 TraesCS1A01G058800 chr1D 39998840 40001660 2820 True 2087.45 4111 96.773 151 2939 2 chr1D.!!$R2 2788
2 TraesCS1A01G058800 chr1B 59634010 59635758 1748 False 2311.00 2311 90.481 646 2431 1 chr1B.!!$F1 1785
3 TraesCS1A01G058800 chr7A 444792538 444793284 746 True 595.00 595 81.184 1312 2067 1 chr7A.!!$R3 755
4 TraesCS1A01G058800 chr7B 388953825 388954608 783 True 569.00 569 79.925 1275 2067 1 chr7B.!!$R2 792
5 TraesCS1A01G058800 chr7B 63170810 63171568 758 False 534.00 534 79.793 1312 2067 1 chr7B.!!$F1 755
6 TraesCS1A01G058800 chr7D 392745721 392746467 746 True 568.00 568 80.526 1312 2067 1 chr7D.!!$R2 755
7 TraesCS1A01G058800 chr7D 104748307 104749065 758 True 562.00 562 80.466 1312 2067 1 chr7D.!!$R1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.251877 TTTTAGAAAAGGGCCCCGGG 60.252 55.0 21.43 15.8 0.00 5.73 F
647 690 0.741221 GGATCTTTTCCGCTGCTCGT 60.741 55.0 0.00 0.0 33.93 4.18 F
1197 1259 0.107848 GCACCGCCAAGTGGTACTAT 60.108 55.0 0.00 0.0 45.40 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1028 1090 0.534203 TCCTCCTTGTTCAACCGCAC 60.534 55.0 0.0 0.0 0.0 5.34 R
2220 2285 0.887387 CGAAGCCTCCGAAAAACCCA 60.887 55.0 0.0 0.0 0.0 4.51 R
3085 3150 0.030908 CTATCTTCGGACGGACTGGC 59.969 60.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.701098 AGCATGCTTATTATTATTTTGATGGTG 57.299 29.630 16.30 0.00 0.00 4.17
46 47 9.480053 GCATGCTTATTATTATTTTGATGGTGT 57.520 29.630 11.37 0.00 0.00 4.16
63 64 3.590720 GTGTACAAACACGTGGTTACC 57.409 47.619 20.26 10.12 46.11 2.85
64 65 2.935201 GTGTACAAACACGTGGTTACCA 59.065 45.455 20.26 12.69 46.11 3.25
65 66 3.560896 GTGTACAAACACGTGGTTACCAT 59.439 43.478 20.26 7.62 46.11 3.55
66 67 4.035441 GTGTACAAACACGTGGTTACCATT 59.965 41.667 20.26 3.78 46.11 3.16
67 68 4.639310 TGTACAAACACGTGGTTACCATTT 59.361 37.500 20.26 5.33 39.29 2.32
68 69 4.722361 ACAAACACGTGGTTACCATTTT 57.278 36.364 20.26 4.54 39.29 1.82
69 70 5.074584 ACAAACACGTGGTTACCATTTTT 57.925 34.783 20.26 3.77 39.29 1.94
70 71 6.205101 ACAAACACGTGGTTACCATTTTTA 57.795 33.333 20.26 0.00 39.29 1.52
71 72 6.267070 ACAAACACGTGGTTACCATTTTTAG 58.733 36.000 20.26 4.94 39.29 1.85
72 73 6.095160 ACAAACACGTGGTTACCATTTTTAGA 59.905 34.615 20.26 0.00 39.29 2.10
73 74 6.696441 AACACGTGGTTACCATTTTTAGAA 57.304 33.333 21.57 0.00 38.15 2.10
74 75 6.696441 ACACGTGGTTACCATTTTTAGAAA 57.304 33.333 21.57 0.00 35.28 2.52
75 76 7.098074 ACACGTGGTTACCATTTTTAGAAAA 57.902 32.000 21.57 0.00 35.28 2.29
76 77 7.197703 ACACGTGGTTACCATTTTTAGAAAAG 58.802 34.615 21.57 0.00 35.28 2.27
77 78 6.639279 CACGTGGTTACCATTTTTAGAAAAGG 59.361 38.462 7.58 0.00 39.07 3.11
78 79 6.153756 CGTGGTTACCATTTTTAGAAAAGGG 58.846 40.000 7.58 13.46 37.81 3.95
79 80 5.929992 GTGGTTACCATTTTTAGAAAAGGGC 59.070 40.000 7.58 2.29 37.81 5.19
80 81 5.012251 TGGTTACCATTTTTAGAAAAGGGCC 59.988 40.000 14.60 0.00 37.81 5.80
81 82 5.484715 GTTACCATTTTTAGAAAAGGGCCC 58.515 41.667 16.46 16.46 37.81 5.80
82 83 2.910319 ACCATTTTTAGAAAAGGGCCCC 59.090 45.455 21.43 1.95 37.81 5.80
83 84 2.093711 CCATTTTTAGAAAAGGGCCCCG 60.094 50.000 21.43 0.00 31.54 5.73
84 85 1.634960 TTTTTAGAAAAGGGCCCCGG 58.365 50.000 21.43 0.00 0.00 5.73
85 86 0.251877 TTTTAGAAAAGGGCCCCGGG 60.252 55.000 21.43 15.80 0.00 5.73
86 87 1.437013 TTTAGAAAAGGGCCCCGGGT 61.437 55.000 21.43 0.03 0.00 5.28
87 88 1.437013 TTAGAAAAGGGCCCCGGGTT 61.437 55.000 21.43 7.45 0.00 4.11
88 89 1.855441 TAGAAAAGGGCCCCGGGTTC 61.855 60.000 21.43 16.63 0.00 3.62
89 90 3.190391 AAAAGGGCCCCGGGTTCT 61.190 61.111 21.43 10.79 0.00 3.01
90 91 1.853565 AAAAGGGCCCCGGGTTCTA 60.854 57.895 21.43 0.00 0.00 2.10
91 92 1.859841 AAAAGGGCCCCGGGTTCTAG 61.860 60.000 21.43 4.20 0.00 2.43
92 93 3.574395 AAGGGCCCCGGGTTCTAGT 62.574 63.158 21.43 0.00 0.00 2.57
93 94 3.013327 GGGCCCCGGGTTCTAGTT 61.013 66.667 21.85 0.00 0.00 2.24
94 95 2.609534 GGGCCCCGGGTTCTAGTTT 61.610 63.158 21.85 0.00 0.00 2.66
95 96 1.077930 GGCCCCGGGTTCTAGTTTC 60.078 63.158 21.85 0.00 0.00 2.78
96 97 1.449070 GCCCCGGGTTCTAGTTTCG 60.449 63.158 21.85 0.00 0.00 3.46
97 98 1.449070 CCCCGGGTTCTAGTTTCGC 60.449 63.158 21.85 0.00 0.00 4.70
98 99 1.449070 CCCGGGTTCTAGTTTCGCC 60.449 63.158 14.18 0.00 0.00 5.54
99 100 1.449070 CCGGGTTCTAGTTTCGCCC 60.449 63.158 0.00 0.00 36.08 6.13
100 101 1.449070 CGGGTTCTAGTTTCGCCCC 60.449 63.158 0.00 0.00 36.04 5.80
101 102 1.449070 GGGTTCTAGTTTCGCCCCG 60.449 63.158 0.00 0.00 33.40 5.73
102 103 1.449070 GGTTCTAGTTTCGCCCCGG 60.449 63.158 0.00 0.00 0.00 5.73
103 104 1.449070 GTTCTAGTTTCGCCCCGGG 60.449 63.158 15.80 15.80 0.00 5.73
104 105 3.319441 TTCTAGTTTCGCCCCGGGC 62.319 63.158 19.64 19.64 46.75 6.13
118 119 2.193248 GGGCCCCCGAAATCTCAG 59.807 66.667 12.23 0.00 0.00 3.35
119 120 2.193248 GGCCCCCGAAATCTCAGG 59.807 66.667 0.00 0.00 0.00 3.86
120 121 2.375345 GGCCCCCGAAATCTCAGGA 61.375 63.158 0.00 0.00 0.00 3.86
121 122 1.153147 GCCCCCGAAATCTCAGGAC 60.153 63.158 0.00 0.00 0.00 3.85
122 123 1.527370 CCCCCGAAATCTCAGGACC 59.473 63.158 0.00 0.00 0.00 4.46
123 124 1.144057 CCCCGAAATCTCAGGACCG 59.856 63.158 0.00 0.00 0.00 4.79
124 125 1.144057 CCCGAAATCTCAGGACCGG 59.856 63.158 0.00 0.00 34.41 5.28
125 126 1.521681 CCGAAATCTCAGGACCGGC 60.522 63.158 0.00 0.00 0.00 6.13
126 127 1.521681 CGAAATCTCAGGACCGGCC 60.522 63.158 0.00 3.58 0.00 6.13
127 128 1.153147 GAAATCTCAGGACCGGCCC 60.153 63.158 0.00 0.00 37.37 5.80
128 129 1.616628 AAATCTCAGGACCGGCCCT 60.617 57.895 2.07 2.07 37.37 5.19
216 235 7.538575 ACAATGTAAAGGAATGTTCATGTAGC 58.461 34.615 0.00 0.00 0.00 3.58
282 301 8.934507 TGTAGTTTTTGGAAAAATGTTACCAG 57.065 30.769 0.84 0.00 39.75 4.00
283 302 8.750298 TGTAGTTTTTGGAAAAATGTTACCAGA 58.250 29.630 0.84 0.00 39.75 3.86
290 309 7.537596 TGGAAAAATGTTACCAGACATTCAT 57.462 32.000 3.97 0.00 46.53 2.57
291 310 7.961351 TGGAAAAATGTTACCAGACATTCATT 58.039 30.769 3.97 3.48 46.53 2.57
292 311 8.428063 TGGAAAAATGTTACCAGACATTCATTT 58.572 29.630 3.97 2.87 46.53 2.32
293 312 9.271828 GGAAAAATGTTACCAGACATTCATTTT 57.728 29.630 3.97 0.00 46.53 1.82
454 478 9.573133 AGTTAGACATGTGTGAAAAAGAAAAAG 57.427 29.630 1.15 0.00 0.00 2.27
455 479 8.807581 GTTAGACATGTGTGAAAAAGAAAAAGG 58.192 33.333 1.15 0.00 0.00 3.11
460 484 8.503196 ACATGTGTGAAAAAGAAAAAGGAAAAC 58.497 29.630 0.00 0.00 0.00 2.43
499 526 2.020720 TCAAAGAAAAACCGCAGAGCA 58.979 42.857 0.00 0.00 0.00 4.26
509 536 3.006706 GCAGAGCACGCGAATACC 58.993 61.111 15.93 0.00 0.00 2.73
524 551 2.750141 ATACCGGCTAAGTCCTCTCA 57.250 50.000 0.00 0.00 0.00 3.27
542 569 5.477607 TCTCAAGGTTCAAAATAGACCGA 57.522 39.130 0.00 0.00 0.00 4.69
546 573 6.472887 TCAAGGTTCAAAATAGACCGAGATT 58.527 36.000 0.00 0.00 0.00 2.40
556 583 9.760660 CAAAATAGACCGAGATTAAAGAGTTTG 57.239 33.333 0.00 0.00 0.00 2.93
557 584 9.720769 AAAATAGACCGAGATTAAAGAGTTTGA 57.279 29.630 0.00 0.00 0.00 2.69
574 601 5.324409 AGTTTGATGTGCTGATTTTAGGGA 58.676 37.500 0.00 0.00 0.00 4.20
585 612 6.891361 TGCTGATTTTAGGGATTGAGATTTCA 59.109 34.615 0.00 0.00 0.00 2.69
594 621 4.958581 GGGATTGAGATTTCAGGGTTTGAT 59.041 41.667 0.00 0.00 35.27 2.57
624 666 4.599047 TGCCTACAAATTCAAGGTTTGG 57.401 40.909 3.97 0.00 40.08 3.28
631 673 6.000246 ACAAATTCAAGGTTTGGTTTGGAT 58.000 33.333 16.86 0.00 40.08 3.41
646 689 2.009888 GGATCTTTTCCGCTGCTCG 58.990 57.895 0.00 0.00 33.93 5.03
647 690 0.741221 GGATCTTTTCCGCTGCTCGT 60.741 55.000 0.00 0.00 33.93 4.18
649 692 1.061276 GATCTTTTCCGCTGCTCGTTC 59.939 52.381 0.00 0.00 36.19 3.95
650 693 1.130613 CTTTTCCGCTGCTCGTTCG 59.869 57.895 0.00 0.00 36.19 3.95
651 694 2.818296 CTTTTCCGCTGCTCGTTCGC 62.818 60.000 0.00 0.00 36.19 4.70
652 695 3.858868 TTTCCGCTGCTCGTTCGCT 62.859 57.895 0.00 0.00 36.19 4.93
865 927 3.077556 CGCTACCCACCTGCCTCT 61.078 66.667 0.00 0.00 0.00 3.69
905 967 0.761187 AAGAGGTGCAGAGCAAGACA 59.239 50.000 0.00 0.00 41.47 3.41
1017 1079 2.278332 TCATGGAGGTCGATCGATCT 57.722 50.000 30.20 30.20 38.47 2.75
1043 1105 2.051345 GCGTGCGGTTGAACAAGG 60.051 61.111 0.00 0.00 0.00 3.61
1052 1114 2.779506 GGTTGAACAAGGAGGAACGAT 58.220 47.619 0.00 0.00 0.00 3.73
1053 1115 2.484264 GGTTGAACAAGGAGGAACGATG 59.516 50.000 0.00 0.00 0.00 3.84
1054 1116 3.139077 GTTGAACAAGGAGGAACGATGT 58.861 45.455 0.00 0.00 0.00 3.06
1095 1157 4.957830 AGCTGGATATCATGGAGGAGTAT 58.042 43.478 4.83 0.00 0.00 2.12
1147 1209 1.603172 CGAAGCTCAAGGACGTGAACT 60.603 52.381 0.00 0.00 0.00 3.01
1155 1217 0.966920 AGGACGTGAACTTGGACGAT 59.033 50.000 0.00 0.00 38.94 3.73
1197 1259 0.107848 GCACCGCCAAGTGGTACTAT 60.108 55.000 0.00 0.00 45.40 2.12
1221 1283 1.885388 CTTCCACAACGTGACGGCA 60.885 57.895 10.66 0.00 35.23 5.69
1227 1289 1.206578 CAACGTGACGGCAATGGTC 59.793 57.895 10.66 0.00 34.99 4.02
1578 1640 4.163078 ACCTTCTTCATCATGATCTTCGGT 59.837 41.667 4.86 5.29 0.00 4.69
1635 1697 3.187699 CTCCATCTCCGGCGTCTCG 62.188 68.421 6.01 0.00 0.00 4.04
2079 2144 3.443045 CAGGTGTTCGCCATGCCC 61.443 66.667 5.19 0.00 0.00 5.36
2082 2147 3.799755 GTGTTCGCCATGCCCGTC 61.800 66.667 4.31 1.39 0.00 4.79
2220 2285 1.374758 CTTCTTCGACGGCCTGCTT 60.375 57.895 0.00 0.00 0.00 3.91
2226 2291 2.597510 GACGGCCTGCTTGGGTTT 60.598 61.111 0.00 0.00 36.00 3.27
2283 2348 1.455217 GCCCTGCATCATCTGGCTT 60.455 57.895 0.00 0.00 39.05 4.35
2289 2354 3.558533 CCTGCATCATCTGGCTTATGCTA 60.559 47.826 7.56 0.00 43.98 3.49
2365 2430 2.037136 GGAGTTGCGCTCATGCTGT 61.037 57.895 9.73 0.00 45.88 4.40
2373 2438 2.401766 GCTCATGCTGTTGTCCCCG 61.402 63.158 0.00 0.00 36.03 5.73
2379 2444 2.511600 CTGTTGTCCCCGATCGGC 60.512 66.667 29.12 15.71 0.00 5.54
2433 2498 7.727181 AGACTTTCAAGTTCTACTCTTAAGCA 58.273 34.615 0.00 0.00 39.88 3.91
2435 2500 7.272978 ACTTTCAAGTTCTACTCTTAAGCACA 58.727 34.615 0.00 0.00 35.21 4.57
2456 2521 7.826252 AGCACACAGTACAAGATTAGATGATTT 59.174 33.333 0.00 0.00 0.00 2.17
2459 2524 9.823647 ACACAGTACAAGATTAGATGATTTAGG 57.176 33.333 0.00 0.00 0.00 2.69
2462 2527 9.703892 CAGTACAAGATTAGATGATTTAGGAGG 57.296 37.037 0.00 0.00 0.00 4.30
2486 2551 9.189156 AGGATTTATTTAGCAAGCACAATAAGA 57.811 29.630 0.00 0.00 0.00 2.10
2594 2659 6.980593 TGCAGCACTAACTCAAAAACATTAT 58.019 32.000 0.00 0.00 0.00 1.28
2611 2676 9.632638 AAAACATTATGAGAGTATAAGGTGCAT 57.367 29.630 0.00 0.00 37.53 3.96
2676 2741 9.776158 TTATACATGTTGTTTATTAGTTTGGCG 57.224 29.630 2.30 0.00 0.00 5.69
2689 2754 3.541632 AGTTTGGCGGTAGATAATGTGG 58.458 45.455 0.00 0.00 0.00 4.17
2713 2778 5.560148 CAACTTCATATAGTCGGTTGTTGC 58.440 41.667 0.00 0.00 32.27 4.17
2727 2792 3.057526 GGTTGTTGCCTAGACACATTTCC 60.058 47.826 0.00 0.00 0.00 3.13
2733 2798 4.922206 TGCCTAGACACATTTCCATCTTT 58.078 39.130 0.00 0.00 0.00 2.52
2750 2815 5.802451 CCATCTTTACATGGATATCGTCTCG 59.198 44.000 0.00 0.00 45.79 4.04
2939 3004 7.377766 AGTTGCGTGAAAATACAATATGTCT 57.622 32.000 0.00 0.00 0.00 3.41
2940 3005 7.243487 AGTTGCGTGAAAATACAATATGTCTG 58.757 34.615 0.00 0.00 0.00 3.51
2941 3006 6.117911 TGCGTGAAAATACAATATGTCTGG 57.882 37.500 0.00 0.00 0.00 3.86
2942 3007 5.065859 TGCGTGAAAATACAATATGTCTGGG 59.934 40.000 0.00 0.00 0.00 4.45
2943 3008 5.510671 CGTGAAAATACAATATGTCTGGGC 58.489 41.667 0.00 0.00 0.00 5.36
2944 3009 5.296780 CGTGAAAATACAATATGTCTGGGCT 59.703 40.000 0.00 0.00 0.00 5.19
2945 3010 6.511767 CGTGAAAATACAATATGTCTGGGCTC 60.512 42.308 0.00 0.00 0.00 4.70
2946 3011 5.827797 TGAAAATACAATATGTCTGGGCTCC 59.172 40.000 0.00 0.00 0.00 4.70
2947 3012 5.387113 AAATACAATATGTCTGGGCTCCA 57.613 39.130 0.00 0.00 0.00 3.86
2948 3013 5.387113 AATACAATATGTCTGGGCTCCAA 57.613 39.130 0.00 0.00 30.80 3.53
2949 3014 3.287867 ACAATATGTCTGGGCTCCAAG 57.712 47.619 0.00 0.00 30.80 3.61
2950 3015 2.092212 ACAATATGTCTGGGCTCCAAGG 60.092 50.000 0.00 0.00 30.80 3.61
2951 3016 2.173356 CAATATGTCTGGGCTCCAAGGA 59.827 50.000 0.00 0.00 30.80 3.36
2952 3017 1.500474 TATGTCTGGGCTCCAAGGAG 58.500 55.000 11.80 11.80 44.56 3.69
2953 3018 1.277580 ATGTCTGGGCTCCAAGGAGG 61.278 60.000 17.34 1.38 42.19 4.30
2966 3031 3.896479 GGAGGCGCCTTCAAGAAG 58.104 61.111 33.34 2.83 38.14 2.85
2977 3042 2.280628 CTTCAAGAAGGATACGGCACC 58.719 52.381 1.86 0.00 46.39 5.01
2978 3043 0.174845 TCAAGAAGGATACGGCACCG 59.825 55.000 7.71 7.71 46.39 4.94
2979 3044 0.810031 CAAGAAGGATACGGCACCGG 60.810 60.000 14.51 0.00 44.69 5.28
2980 3045 0.974010 AAGAAGGATACGGCACCGGA 60.974 55.000 9.46 4.92 44.69 5.14
2981 3046 1.067582 GAAGGATACGGCACCGGAG 59.932 63.158 9.46 0.00 44.69 4.63
2982 3047 2.973180 GAAGGATACGGCACCGGAGC 62.973 65.000 16.31 16.31 44.69 4.70
2983 3048 4.944372 GGATACGGCACCGGAGCG 62.944 72.222 17.93 14.81 39.91 5.03
3006 3071 4.916314 ACCGCCCGATCCGAGGAT 62.916 66.667 3.97 3.97 37.59 3.24
3007 3072 4.057428 CCGCCCGATCCGAGGATC 62.057 72.222 19.46 19.46 45.42 3.36
3017 3082 3.828875 ATCCGAGGATCAGAGTTTTCC 57.171 47.619 0.00 0.00 33.17 3.13
3018 3083 1.831736 TCCGAGGATCAGAGTTTTCCC 59.168 52.381 0.00 0.00 33.17 3.97
3019 3084 1.834263 CCGAGGATCAGAGTTTTCCCT 59.166 52.381 0.00 0.00 33.17 4.20
3020 3085 2.419297 CCGAGGATCAGAGTTTTCCCTG 60.419 54.545 0.00 0.00 33.17 4.45
3021 3086 2.419297 CGAGGATCAGAGTTTTCCCTGG 60.419 54.545 0.00 0.00 33.17 4.45
3022 3087 2.840651 GAGGATCAGAGTTTTCCCTGGA 59.159 50.000 0.00 0.00 33.17 3.86
3023 3088 2.843113 AGGATCAGAGTTTTCCCTGGAG 59.157 50.000 0.00 0.00 0.00 3.86
3024 3089 2.637947 GATCAGAGTTTTCCCTGGAGC 58.362 52.381 0.00 0.00 0.00 4.70
3025 3090 1.434188 TCAGAGTTTTCCCTGGAGCA 58.566 50.000 0.00 0.00 0.00 4.26
3026 3091 1.774254 TCAGAGTTTTCCCTGGAGCAA 59.226 47.619 0.00 0.00 0.00 3.91
3027 3092 1.882623 CAGAGTTTTCCCTGGAGCAAC 59.117 52.381 0.00 0.00 0.00 4.17
3028 3093 1.494721 AGAGTTTTCCCTGGAGCAACA 59.505 47.619 0.00 0.00 0.00 3.33
3029 3094 1.609072 GAGTTTTCCCTGGAGCAACAC 59.391 52.381 0.00 3.74 0.00 3.32
3030 3095 0.310854 GTTTTCCCTGGAGCAACACG 59.689 55.000 0.00 0.00 0.00 4.49
3031 3096 0.181587 TTTTCCCTGGAGCAACACGA 59.818 50.000 0.00 0.00 0.00 4.35
3032 3097 0.400213 TTTCCCTGGAGCAACACGAT 59.600 50.000 0.00 0.00 0.00 3.73
3033 3098 0.321564 TTCCCTGGAGCAACACGATG 60.322 55.000 0.00 0.00 0.00 3.84
3034 3099 1.746615 CCCTGGAGCAACACGATGG 60.747 63.158 0.00 0.00 0.00 3.51
3035 3100 1.746615 CCTGGAGCAACACGATGGG 60.747 63.158 0.00 0.00 0.00 4.00
3036 3101 2.359850 TGGAGCAACACGATGGGC 60.360 61.111 0.00 0.00 0.00 5.36
3037 3102 2.359850 GGAGCAACACGATGGGCA 60.360 61.111 0.00 0.00 0.00 5.36
3038 3103 2.401766 GGAGCAACACGATGGGCAG 61.402 63.158 0.00 0.00 0.00 4.85
3039 3104 1.672356 GAGCAACACGATGGGCAGT 60.672 57.895 0.00 0.00 0.00 4.40
3040 3105 1.915614 GAGCAACACGATGGGCAGTG 61.916 60.000 0.00 0.00 43.46 3.66
3041 3106 1.965930 GCAACACGATGGGCAGTGA 60.966 57.895 0.00 0.00 40.56 3.41
3042 3107 1.308069 GCAACACGATGGGCAGTGAT 61.308 55.000 0.00 0.00 40.56 3.06
3043 3108 2.011548 GCAACACGATGGGCAGTGATA 61.012 52.381 0.00 0.00 40.56 2.15
3044 3109 1.935873 CAACACGATGGGCAGTGATAG 59.064 52.381 0.00 0.00 40.56 2.08
3045 3110 1.195115 ACACGATGGGCAGTGATAGT 58.805 50.000 0.00 0.00 40.56 2.12
3046 3111 1.137086 ACACGATGGGCAGTGATAGTC 59.863 52.381 0.00 0.00 40.56 2.59
3047 3112 0.385751 ACGATGGGCAGTGATAGTCG 59.614 55.000 0.00 0.45 0.00 4.18
3048 3113 0.941463 CGATGGGCAGTGATAGTCGC 60.941 60.000 0.00 0.00 0.00 5.19
3049 3114 0.941463 GATGGGCAGTGATAGTCGCG 60.941 60.000 0.00 0.00 30.95 5.87
3050 3115 1.391933 ATGGGCAGTGATAGTCGCGA 61.392 55.000 3.71 3.71 30.95 5.87
3051 3116 1.589196 GGGCAGTGATAGTCGCGAC 60.589 63.158 31.30 31.30 30.95 5.19
3052 3117 1.939785 GGCAGTGATAGTCGCGACG 60.940 63.158 31.56 17.47 36.20 5.12
3053 3118 1.062047 GCAGTGATAGTCGCGACGA 59.938 57.895 31.56 27.91 36.20 4.20
3065 3130 4.238385 CGACGACGCCTTCAAGAA 57.762 55.556 0.00 0.00 0.00 2.52
3066 3131 2.062779 CGACGACGCCTTCAAGAAG 58.937 57.895 2.83 2.83 38.14 2.85
3076 3141 2.977772 CTTCAAGAAGGGAGCGATCT 57.022 50.000 0.00 0.00 34.87 2.75
3077 3142 3.258971 CTTCAAGAAGGGAGCGATCTT 57.741 47.619 0.00 0.00 34.87 2.40
3078 3143 2.969628 TCAAGAAGGGAGCGATCTTC 57.030 50.000 0.00 0.00 39.55 2.87
3079 3144 1.135139 TCAAGAAGGGAGCGATCTTCG 59.865 52.381 0.00 0.00 42.85 3.79
3088 3153 4.847516 CGATCTTCGCCGTCGCCA 62.848 66.667 0.00 0.00 31.14 5.69
3089 3154 2.956964 GATCTTCGCCGTCGCCAG 60.957 66.667 0.00 0.00 35.26 4.85
3090 3155 3.701604 GATCTTCGCCGTCGCCAGT 62.702 63.158 0.00 0.00 35.26 4.00
3091 3156 3.701604 ATCTTCGCCGTCGCCAGTC 62.702 63.158 0.00 0.00 35.26 3.51
3099 3164 4.047059 GTCGCCAGTCCGTCCGAA 62.047 66.667 0.00 0.00 0.00 4.30
3100 3165 3.744719 TCGCCAGTCCGTCCGAAG 61.745 66.667 0.00 0.00 0.00 3.79
3101 3166 3.744719 CGCCAGTCCGTCCGAAGA 61.745 66.667 0.00 0.00 0.00 2.87
3102 3167 2.893398 GCCAGTCCGTCCGAAGAT 59.107 61.111 0.00 0.00 0.00 2.40
3103 3168 1.721664 CGCCAGTCCGTCCGAAGATA 61.722 60.000 0.00 0.00 0.00 1.98
3104 3169 0.030908 GCCAGTCCGTCCGAAGATAG 59.969 60.000 0.00 0.00 0.00 2.08
3105 3170 1.676746 CCAGTCCGTCCGAAGATAGA 58.323 55.000 0.00 0.00 0.00 1.98
3106 3171 1.604755 CCAGTCCGTCCGAAGATAGAG 59.395 57.143 0.00 0.00 0.00 2.43
3107 3172 2.562635 CAGTCCGTCCGAAGATAGAGA 58.437 52.381 0.00 0.00 0.00 3.10
3108 3173 2.546368 CAGTCCGTCCGAAGATAGAGAG 59.454 54.545 0.00 0.00 0.00 3.20
3109 3174 1.874872 GTCCGTCCGAAGATAGAGAGG 59.125 57.143 0.00 0.00 0.00 3.69
3110 3175 1.489649 TCCGTCCGAAGATAGAGAGGT 59.510 52.381 0.00 0.00 0.00 3.85
3111 3176 2.092538 TCCGTCCGAAGATAGAGAGGTT 60.093 50.000 0.00 0.00 0.00 3.50
3112 3177 2.688958 CCGTCCGAAGATAGAGAGGTTT 59.311 50.000 0.00 0.00 0.00 3.27
3113 3178 3.130693 CCGTCCGAAGATAGAGAGGTTTT 59.869 47.826 0.00 0.00 0.00 2.43
3114 3179 4.352887 CGTCCGAAGATAGAGAGGTTTTC 58.647 47.826 0.00 0.00 0.00 2.29
3115 3180 4.142447 CGTCCGAAGATAGAGAGGTTTTCA 60.142 45.833 0.00 0.00 0.00 2.69
3116 3181 5.103687 GTCCGAAGATAGAGAGGTTTTCAC 58.896 45.833 0.00 0.00 0.00 3.18
3117 3182 4.159879 TCCGAAGATAGAGAGGTTTTCACC 59.840 45.833 0.00 0.00 44.67 4.02
3118 3183 4.434520 CGAAGATAGAGAGGTTTTCACCC 58.565 47.826 0.00 0.00 45.63 4.61
3119 3184 4.680975 CGAAGATAGAGAGGTTTTCACCCC 60.681 50.000 0.00 0.00 45.63 4.95
3120 3185 2.766828 AGATAGAGAGGTTTTCACCCCG 59.233 50.000 0.00 0.00 45.63 5.73
3121 3186 1.272807 TAGAGAGGTTTTCACCCCGG 58.727 55.000 0.00 0.00 45.63 5.73
3122 3187 1.674651 GAGAGGTTTTCACCCCGGC 60.675 63.158 0.00 0.00 45.63 6.13
3123 3188 2.675423 GAGGTTTTCACCCCGGCC 60.675 66.667 0.00 0.00 45.63 6.13
3124 3189 3.501040 GAGGTTTTCACCCCGGCCA 62.501 63.158 2.24 0.00 45.63 5.36
3125 3190 2.522193 GGTTTTCACCCCGGCCAA 60.522 61.111 2.24 0.00 37.03 4.52
3126 3191 2.732016 GTTTTCACCCCGGCCAAC 59.268 61.111 2.24 0.00 0.00 3.77
3127 3192 2.128507 GTTTTCACCCCGGCCAACA 61.129 57.895 2.24 0.00 0.00 3.33
3128 3193 2.128507 TTTTCACCCCGGCCAACAC 61.129 57.895 2.24 0.00 0.00 3.32
3129 3194 2.856039 TTTTCACCCCGGCCAACACA 62.856 55.000 2.24 0.00 0.00 3.72
3130 3195 4.572571 TCACCCCGGCCAACACAC 62.573 66.667 2.24 0.00 0.00 3.82
3131 3196 4.885270 CACCCCGGCCAACACACA 62.885 66.667 2.24 0.00 0.00 3.72
3132 3197 4.887190 ACCCCGGCCAACACACAC 62.887 66.667 2.24 0.00 0.00 3.82
3138 3203 4.264638 GCCAACACACACCGCCAC 62.265 66.667 0.00 0.00 0.00 5.01
3139 3204 3.591835 CCAACACACACCGCCACC 61.592 66.667 0.00 0.00 0.00 4.61
3140 3205 3.947841 CAACACACACCGCCACCG 61.948 66.667 0.00 0.00 0.00 4.94
3141 3206 4.164087 AACACACACCGCCACCGA 62.164 61.111 0.00 0.00 36.29 4.69
3142 3207 3.683966 AACACACACCGCCACCGAA 62.684 57.895 0.00 0.00 36.29 4.30
3143 3208 3.645975 CACACACCGCCACCGAAC 61.646 66.667 0.00 0.00 36.29 3.95
3151 3216 3.799755 GCCACCGAACGCCACATC 61.800 66.667 0.00 0.00 0.00 3.06
3152 3217 3.124921 CCACCGAACGCCACATCC 61.125 66.667 0.00 0.00 0.00 3.51
3153 3218 3.124921 CACCGAACGCCACATCCC 61.125 66.667 0.00 0.00 0.00 3.85
3154 3219 4.752879 ACCGAACGCCACATCCCG 62.753 66.667 0.00 0.00 0.00 5.14
3161 3226 3.792736 GCCACATCCCGGCTACCA 61.793 66.667 0.00 0.00 46.56 3.25
3162 3227 2.189521 CCACATCCCGGCTACCAC 59.810 66.667 0.00 0.00 0.00 4.16
3163 3228 2.202878 CACATCCCGGCTACCACG 60.203 66.667 0.00 0.00 0.00 4.94
3164 3229 4.157120 ACATCCCGGCTACCACGC 62.157 66.667 0.00 0.00 0.00 5.34
3165 3230 4.910585 CATCCCGGCTACCACGCC 62.911 72.222 0.00 0.00 46.68 5.68
3192 3257 4.814294 GTCGTGGCAGCCGGGTAG 62.814 72.222 5.47 1.79 0.00 3.18
3195 3260 4.840005 GTGGCAGCCGGGTAGCTC 62.840 72.222 21.60 14.64 42.61 4.09
3204 3269 3.075005 GGGTAGCTCCGAGGCACA 61.075 66.667 0.00 0.00 37.00 4.57
3205 3270 2.656069 GGGTAGCTCCGAGGCACAA 61.656 63.158 0.00 0.00 37.00 3.33
3206 3271 1.153549 GGTAGCTCCGAGGCACAAG 60.154 63.158 0.00 0.00 34.17 3.16
3207 3272 1.811679 GTAGCTCCGAGGCACAAGC 60.812 63.158 0.00 0.00 41.10 4.01
3208 3273 1.984570 TAGCTCCGAGGCACAAGCT 60.985 57.895 12.17 12.17 46.35 3.74
3209 3274 1.949847 TAGCTCCGAGGCACAAGCTC 61.950 60.000 11.13 0.00 43.72 4.09
3210 3275 2.977178 CTCCGAGGCACAAGCTCT 59.023 61.111 0.00 0.00 41.70 4.09
3211 3276 1.447489 CTCCGAGGCACAAGCTCTG 60.447 63.158 0.00 0.00 41.70 3.35
3212 3277 3.123620 CCGAGGCACAAGCTCTGC 61.124 66.667 7.65 7.65 41.70 4.26
3217 3282 2.882876 GCACAAGCTCTGCCCATG 59.117 61.111 5.22 0.00 37.91 3.66
3218 3283 1.676635 GCACAAGCTCTGCCCATGA 60.677 57.895 5.22 0.00 37.91 3.07
3219 3284 1.654954 GCACAAGCTCTGCCCATGAG 61.655 60.000 5.22 0.00 37.91 2.90
3224 3289 2.513204 CTCTGCCCATGAGCACCG 60.513 66.667 0.00 0.00 38.00 4.94
3225 3290 4.783621 TCTGCCCATGAGCACCGC 62.784 66.667 0.00 0.00 38.00 5.68
3263 3328 2.513897 CGCCCCGGAATCCAAGAC 60.514 66.667 0.73 0.00 0.00 3.01
3264 3329 2.124278 GCCCCGGAATCCAAGACC 60.124 66.667 0.73 0.00 0.00 3.85
3265 3330 2.680370 GCCCCGGAATCCAAGACCT 61.680 63.158 0.73 0.00 0.00 3.85
3266 3331 1.999346 CCCCGGAATCCAAGACCTT 59.001 57.895 0.73 0.00 0.00 3.50
3267 3332 0.394352 CCCCGGAATCCAAGACCTTG 60.394 60.000 0.73 2.89 40.13 3.61
3268 3333 0.618458 CCCGGAATCCAAGACCTTGA 59.382 55.000 0.73 0.00 42.93 3.02
3269 3334 1.679032 CCCGGAATCCAAGACCTTGAC 60.679 57.143 0.73 0.97 42.93 3.18
3270 3335 1.003118 CCGGAATCCAAGACCTTGACA 59.997 52.381 11.06 0.00 42.93 3.58
3271 3336 2.076863 CGGAATCCAAGACCTTGACAC 58.923 52.381 11.06 0.97 42.93 3.67
3272 3337 2.437413 GGAATCCAAGACCTTGACACC 58.563 52.381 11.06 5.68 42.93 4.16
3273 3338 2.224769 GGAATCCAAGACCTTGACACCA 60.225 50.000 11.06 0.00 42.93 4.17
3274 3339 3.486383 GAATCCAAGACCTTGACACCAA 58.514 45.455 11.06 0.00 42.93 3.67
3276 3341 0.954452 CCAAGACCTTGACACCAAGC 59.046 55.000 11.06 0.00 46.42 4.01
3277 3342 0.954452 CAAGACCTTGACACCAAGCC 59.046 55.000 3.79 0.00 46.42 4.35
3278 3343 0.178990 AAGACCTTGACACCAAGCCC 60.179 55.000 0.00 0.00 46.42 5.19
3279 3344 1.062488 AGACCTTGACACCAAGCCCT 61.062 55.000 0.00 0.00 46.42 5.19
3280 3345 0.606673 GACCTTGACACCAAGCCCTC 60.607 60.000 0.00 0.00 46.42 4.30
3281 3346 1.303643 CCTTGACACCAAGCCCTCC 60.304 63.158 0.00 0.00 46.42 4.30
3282 3347 1.672356 CTTGACACCAAGCCCTCCG 60.672 63.158 0.00 0.00 42.72 4.63
3283 3348 2.111999 CTTGACACCAAGCCCTCCGA 62.112 60.000 0.00 0.00 42.72 4.55
3284 3349 2.111999 TTGACACCAAGCCCTCCGAG 62.112 60.000 0.00 0.00 0.00 4.63
3285 3350 3.959991 GACACCAAGCCCTCCGAGC 62.960 68.421 0.00 0.00 0.00 5.03
3286 3351 4.785453 CACCAAGCCCTCCGAGCC 62.785 72.222 0.00 0.00 0.00 4.70
3295 3360 2.520982 CTCCGAGCCCCACCGATA 60.521 66.667 0.00 0.00 0.00 2.92
3296 3361 2.042741 TCCGAGCCCCACCGATAA 60.043 61.111 0.00 0.00 0.00 1.75
3297 3362 2.108362 CCGAGCCCCACCGATAAC 59.892 66.667 0.00 0.00 0.00 1.89
3298 3363 2.108362 CGAGCCCCACCGATAACC 59.892 66.667 0.00 0.00 0.00 2.85
3299 3364 2.509422 GAGCCCCACCGATAACCC 59.491 66.667 0.00 0.00 0.00 4.11
3300 3365 2.285818 AGCCCCACCGATAACCCA 60.286 61.111 0.00 0.00 0.00 4.51
3301 3366 1.917336 GAGCCCCACCGATAACCCAA 61.917 60.000 0.00 0.00 0.00 4.12
3302 3367 1.751544 GCCCCACCGATAACCCAAC 60.752 63.158 0.00 0.00 0.00 3.77
3303 3368 1.077285 CCCCACCGATAACCCAACC 60.077 63.158 0.00 0.00 0.00 3.77
3304 3369 1.450669 CCCACCGATAACCCAACCG 60.451 63.158 0.00 0.00 0.00 4.44
3305 3370 2.110352 CCACCGATAACCCAACCGC 61.110 63.158 0.00 0.00 0.00 5.68
3306 3371 1.376166 CACCGATAACCCAACCGCA 60.376 57.895 0.00 0.00 0.00 5.69
3307 3372 1.078708 ACCGATAACCCAACCGCAG 60.079 57.895 0.00 0.00 0.00 5.18
3308 3373 1.219664 CCGATAACCCAACCGCAGA 59.780 57.895 0.00 0.00 0.00 4.26
3309 3374 0.810031 CCGATAACCCAACCGCAGAG 60.810 60.000 0.00 0.00 0.00 3.35
3310 3375 0.174845 CGATAACCCAACCGCAGAGA 59.825 55.000 0.00 0.00 0.00 3.10
3311 3376 1.653151 GATAACCCAACCGCAGAGAC 58.347 55.000 0.00 0.00 0.00 3.36
3312 3377 0.981183 ATAACCCAACCGCAGAGACA 59.019 50.000 0.00 0.00 0.00 3.41
3313 3378 0.320374 TAACCCAACCGCAGAGACAG 59.680 55.000 0.00 0.00 0.00 3.51
3314 3379 2.046892 CCCAACCGCAGAGACAGG 60.047 66.667 0.00 0.00 0.00 4.00
3315 3380 2.743928 CCAACCGCAGAGACAGGC 60.744 66.667 0.00 0.00 0.00 4.85
3321 3386 3.882025 GCAGAGACAGGCGGAAAG 58.118 61.111 0.00 0.00 0.00 2.62
3322 3387 1.743252 GCAGAGACAGGCGGAAAGG 60.743 63.158 0.00 0.00 0.00 3.11
3367 3432 4.473520 CCAGCGCCGAGACCCAAT 62.474 66.667 2.29 0.00 0.00 3.16
3368 3433 2.499205 CAGCGCCGAGACCCAATA 59.501 61.111 2.29 0.00 0.00 1.90
3369 3434 1.592669 CAGCGCCGAGACCCAATAG 60.593 63.158 2.29 0.00 0.00 1.73
3370 3435 2.280186 GCGCCGAGACCCAATAGG 60.280 66.667 0.00 0.00 43.78 2.57
3371 3436 2.280186 CGCCGAGACCCAATAGGC 60.280 66.667 0.00 0.00 44.00 3.93
3372 3437 2.111251 GCCGAGACCCAATAGGCC 59.889 66.667 0.00 0.00 41.81 5.19
3373 3438 2.421739 CCGAGACCCAATAGGCCG 59.578 66.667 0.00 0.00 40.58 6.13
3374 3439 2.421739 CGAGACCCAATAGGCCGG 59.578 66.667 0.00 0.00 40.58 6.13
3375 3440 2.111251 GAGACCCAATAGGCCGGC 59.889 66.667 21.18 21.18 40.58 6.13
3376 3441 3.809374 GAGACCCAATAGGCCGGCG 62.809 68.421 22.54 7.07 40.58 6.46
3377 3442 3.857038 GACCCAATAGGCCGGCGA 61.857 66.667 22.54 11.84 40.58 5.54
3378 3443 4.171103 ACCCAATAGGCCGGCGAC 62.171 66.667 22.54 7.61 40.58 5.19
3379 3444 4.169696 CCCAATAGGCCGGCGACA 62.170 66.667 22.54 8.19 0.00 4.35
3380 3445 2.124901 CCAATAGGCCGGCGACAA 60.125 61.111 22.54 5.64 0.00 3.18
3381 3446 2.180204 CCAATAGGCCGGCGACAAG 61.180 63.158 22.54 10.16 0.00 3.16
3391 3456 2.184322 GCGACAAGCCTCCATCGA 59.816 61.111 0.00 0.00 40.81 3.59
3392 3457 1.880340 GCGACAAGCCTCCATCGAG 60.880 63.158 0.00 0.00 40.81 4.04
3393 3458 1.880340 CGACAAGCCTCCATCGAGC 60.880 63.158 0.00 0.00 36.70 5.03
3394 3459 1.522580 GACAAGCCTCCATCGAGCC 60.523 63.158 0.00 0.00 34.49 4.70
3395 3460 2.587194 CAAGCCTCCATCGAGCCG 60.587 66.667 0.00 0.00 34.49 5.52
3396 3461 3.077556 AAGCCTCCATCGAGCCGT 61.078 61.111 0.00 0.00 34.49 5.68
3397 3462 3.082579 AAGCCTCCATCGAGCCGTC 62.083 63.158 0.00 0.00 34.49 4.79
3398 3463 4.593864 GCCTCCATCGAGCCGTCC 62.594 72.222 0.00 0.00 34.49 4.79
3399 3464 2.835431 CCTCCATCGAGCCGTCCT 60.835 66.667 0.00 0.00 34.49 3.85
3400 3465 2.415010 CTCCATCGAGCCGTCCTG 59.585 66.667 0.00 0.00 0.00 3.86
3401 3466 3.781770 CTCCATCGAGCCGTCCTGC 62.782 68.421 0.00 0.00 0.00 4.85
3403 3468 4.193334 CATCGAGCCGTCCTGCGA 62.193 66.667 0.00 0.00 44.77 5.10
3404 3469 4.194720 ATCGAGCCGTCCTGCGAC 62.195 66.667 0.00 0.00 44.77 5.19
3430 3495 3.805307 CGAGACGAGCGCAGTCCT 61.805 66.667 25.48 16.10 39.31 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.701098 CACCATCAAAATAATAATAAGCATGCT 57.299 29.630 16.30 16.30 0.00 3.79
20 21 9.480053 ACACCATCAAAATAATAATAAGCATGC 57.520 29.630 10.51 10.51 0.00 4.06
41 42 7.884172 ATGGTAACCACGTGTTTGTACACCA 62.884 44.000 17.24 17.24 42.67 4.17
42 43 5.513025 ATGGTAACCACGTGTTTGTACACC 61.513 45.833 15.65 11.34 42.67 4.16
43 44 3.560896 ATGGTAACCACGTGTTTGTACAC 59.439 43.478 15.65 1.21 42.43 2.90
44 45 3.257469 TGGTAACCACGTGTTTGTACA 57.743 42.857 15.65 4.93 38.42 2.90
45 46 4.816786 AATGGTAACCACGTGTTTGTAC 57.183 40.909 15.65 10.16 35.80 2.90
46 47 5.831702 AAAATGGTAACCACGTGTTTGTA 57.168 34.783 15.65 0.00 35.80 2.41
47 48 4.722361 AAAATGGTAACCACGTGTTTGT 57.278 36.364 15.65 2.06 35.80 2.83
48 49 6.496571 TCTAAAAATGGTAACCACGTGTTTG 58.503 36.000 15.65 1.33 35.80 2.93
49 50 6.696441 TCTAAAAATGGTAACCACGTGTTT 57.304 33.333 15.65 9.49 35.80 2.83
50 51 6.696441 TTCTAAAAATGGTAACCACGTGTT 57.304 33.333 15.65 11.23 35.80 3.32
51 52 6.696441 TTTCTAAAAATGGTAACCACGTGT 57.304 33.333 15.65 0.00 35.80 4.49
52 53 6.639279 CCTTTTCTAAAAATGGTAACCACGTG 59.361 38.462 9.08 9.08 35.80 4.49
53 54 6.239092 CCCTTTTCTAAAAATGGTAACCACGT 60.239 38.462 0.00 0.00 37.78 4.49
54 55 6.153756 CCCTTTTCTAAAAATGGTAACCACG 58.846 40.000 0.00 0.00 37.78 4.94
55 56 5.929992 GCCCTTTTCTAAAAATGGTAACCAC 59.070 40.000 7.86 0.00 37.78 4.16
56 57 5.012251 GGCCCTTTTCTAAAAATGGTAACCA 59.988 40.000 0.00 0.00 37.78 3.67
57 58 5.484715 GGCCCTTTTCTAAAAATGGTAACC 58.515 41.667 0.00 0.00 37.78 2.85
58 59 5.484715 GGGCCCTTTTCTAAAAATGGTAAC 58.515 41.667 17.04 1.42 37.78 2.50
59 60 4.532916 GGGGCCCTTTTCTAAAAATGGTAA 59.467 41.667 24.38 0.00 37.78 2.85
60 61 4.098155 GGGGCCCTTTTCTAAAAATGGTA 58.902 43.478 24.38 0.00 37.78 3.25
61 62 2.910319 GGGGCCCTTTTCTAAAAATGGT 59.090 45.455 24.38 0.00 37.78 3.55
62 63 2.093711 CGGGGCCCTTTTCTAAAAATGG 60.094 50.000 24.38 0.00 38.70 3.16
63 64 2.093711 CCGGGGCCCTTTTCTAAAAATG 60.094 50.000 24.38 0.00 0.00 2.32
64 65 2.184533 CCGGGGCCCTTTTCTAAAAAT 58.815 47.619 24.38 0.00 0.00 1.82
65 66 1.634960 CCGGGGCCCTTTTCTAAAAA 58.365 50.000 24.38 0.00 0.00 1.94
66 67 0.251877 CCCGGGGCCCTTTTCTAAAA 60.252 55.000 24.38 0.00 0.00 1.52
67 68 1.384975 CCCGGGGCCCTTTTCTAAA 59.615 57.895 24.38 0.00 0.00 1.85
68 69 1.437013 AACCCGGGGCCCTTTTCTAA 61.437 55.000 27.92 0.00 0.00 2.10
69 70 1.853565 AACCCGGGGCCCTTTTCTA 60.854 57.895 27.92 0.00 0.00 2.10
70 71 3.190391 AACCCGGGGCCCTTTTCT 61.190 61.111 27.92 0.31 0.00 2.52
71 72 1.855441 TAGAACCCGGGGCCCTTTTC 61.855 60.000 27.92 18.05 0.00 2.29
72 73 1.853565 TAGAACCCGGGGCCCTTTT 60.854 57.895 27.92 8.76 0.00 2.27
73 74 2.204182 TAGAACCCGGGGCCCTTT 60.204 61.111 27.92 9.65 0.00 3.11
74 75 2.691252 CTAGAACCCGGGGCCCTT 60.691 66.667 27.92 10.11 0.00 3.95
75 76 3.574395 AACTAGAACCCGGGGCCCT 62.574 63.158 27.92 20.05 0.00 5.19
76 77 2.547640 GAAACTAGAACCCGGGGCCC 62.548 65.000 27.92 15.76 0.00 5.80
77 78 1.077930 GAAACTAGAACCCGGGGCC 60.078 63.158 27.92 16.19 0.00 5.80
78 79 1.449070 CGAAACTAGAACCCGGGGC 60.449 63.158 27.92 16.97 0.00 5.80
79 80 1.449070 GCGAAACTAGAACCCGGGG 60.449 63.158 27.92 12.73 0.00 5.73
80 81 1.449070 GGCGAAACTAGAACCCGGG 60.449 63.158 22.25 22.25 0.00 5.73
81 82 1.449070 GGGCGAAACTAGAACCCGG 60.449 63.158 0.00 0.00 0.00 5.73
82 83 1.449070 GGGGCGAAACTAGAACCCG 60.449 63.158 0.00 0.00 41.83 5.28
83 84 1.449070 CGGGGCGAAACTAGAACCC 60.449 63.158 0.00 0.00 40.05 4.11
84 85 1.449070 CCGGGGCGAAACTAGAACC 60.449 63.158 0.00 0.00 0.00 3.62
85 86 1.449070 CCCGGGGCGAAACTAGAAC 60.449 63.158 14.71 0.00 0.00 3.01
86 87 2.983791 CCCGGGGCGAAACTAGAA 59.016 61.111 14.71 0.00 0.00 2.10
87 88 3.777910 GCCCGGGGCGAAACTAGA 61.778 66.667 24.63 0.00 39.62 2.43
101 102 2.193248 CTGAGATTTCGGGGGCCC 59.807 66.667 15.76 15.76 0.00 5.80
102 103 2.193248 CCTGAGATTTCGGGGGCC 59.807 66.667 3.02 0.00 44.82 5.80
107 108 1.521681 GCCGGTCCTGAGATTTCGG 60.522 63.158 1.90 0.00 36.58 4.30
108 109 1.521681 GGCCGGTCCTGAGATTTCG 60.522 63.158 1.90 0.00 0.00 3.46
109 110 1.153147 GGGCCGGTCCTGAGATTTC 60.153 63.158 20.78 0.00 34.39 2.17
110 111 1.616628 AGGGCCGGTCCTGAGATTT 60.617 57.895 31.20 0.00 35.47 2.17
111 112 2.041265 AGGGCCGGTCCTGAGATT 59.959 61.111 31.20 0.00 35.47 2.40
143 144 9.970395 TGTCACGTATATTCTATTAACGGAAAT 57.030 29.630 0.00 0.00 37.86 2.17
144 145 9.970395 ATGTCACGTATATTCTATTAACGGAAA 57.030 29.630 0.00 0.00 37.86 3.13
145 146 9.401873 CATGTCACGTATATTCTATTAACGGAA 57.598 33.333 0.00 0.00 37.86 4.30
146 147 8.570488 ACATGTCACGTATATTCTATTAACGGA 58.430 33.333 0.00 0.00 37.86 4.69
147 148 8.635983 CACATGTCACGTATATTCTATTAACGG 58.364 37.037 0.00 0.00 37.86 4.44
148 149 9.177304 ACACATGTCACGTATATTCTATTAACG 57.823 33.333 0.00 0.00 39.37 3.18
184 185 8.816640 GAACATTCCTTTACATTGTTCAACAT 57.183 30.769 8.72 0.00 43.44 2.71
377 401 7.552458 ACGCACACATGAAATATTCTTGATA 57.448 32.000 0.00 0.00 38.00 2.15
378 402 6.441093 ACGCACACATGAAATATTCTTGAT 57.559 33.333 0.00 0.00 38.00 2.57
379 403 5.878332 ACGCACACATGAAATATTCTTGA 57.122 34.783 0.00 0.00 38.00 3.02
380 404 8.446489 TTTAACGCACACATGAAATATTCTTG 57.554 30.769 0.00 4.89 39.81 3.02
383 407 9.674208 CATTTTTAACGCACACATGAAATATTC 57.326 29.630 0.00 0.00 0.00 1.75
427 451 9.921637 TTTTTCTTTTTCACACATGTCTAACTT 57.078 25.926 0.00 0.00 0.00 2.66
429 453 8.807581 CCTTTTTCTTTTTCACACATGTCTAAC 58.192 33.333 0.00 0.00 0.00 2.34
430 454 8.744652 TCCTTTTTCTTTTTCACACATGTCTAA 58.255 29.630 0.00 0.00 0.00 2.10
435 459 8.502387 TGTTTTCCTTTTTCTTTTTCACACATG 58.498 29.630 0.00 0.00 0.00 3.21
466 490 8.655970 CGGTTTTTCTTTGATTGTTTTTCTCTT 58.344 29.630 0.00 0.00 0.00 2.85
467 491 7.201522 GCGGTTTTTCTTTGATTGTTTTTCTCT 60.202 33.333 0.00 0.00 0.00 3.10
468 492 6.899771 GCGGTTTTTCTTTGATTGTTTTTCTC 59.100 34.615 0.00 0.00 0.00 2.87
469 493 6.370166 TGCGGTTTTTCTTTGATTGTTTTTCT 59.630 30.769 0.00 0.00 0.00 2.52
470 494 6.538444 TGCGGTTTTTCTTTGATTGTTTTTC 58.462 32.000 0.00 0.00 0.00 2.29
499 526 0.248784 GACTTAGCCGGTATTCGCGT 60.249 55.000 5.77 0.00 37.59 6.01
509 536 1.187087 ACCTTGAGAGGACTTAGCCG 58.813 55.000 0.00 0.00 46.74 5.52
524 551 8.857694 TTTAATCTCGGTCTATTTTGAACCTT 57.142 30.769 0.00 0.00 0.00 3.50
542 569 7.934855 ATCAGCACATCAAACTCTTTAATCT 57.065 32.000 0.00 0.00 0.00 2.40
546 573 8.514594 CCTAAAATCAGCACATCAAACTCTTTA 58.485 33.333 0.00 0.00 0.00 1.85
556 583 5.824624 TCTCAATCCCTAAAATCAGCACATC 59.175 40.000 0.00 0.00 0.00 3.06
557 584 5.759059 TCTCAATCCCTAAAATCAGCACAT 58.241 37.500 0.00 0.00 0.00 3.21
574 601 8.655935 ACTAAATCAAACCCTGAAATCTCAAT 57.344 30.769 0.00 0.00 37.67 2.57
585 612 5.887214 AGGCAAAAACTAAATCAAACCCT 57.113 34.783 0.00 0.00 0.00 4.34
594 621 8.261522 ACCTTGAATTTGTAGGCAAAAACTAAA 58.738 29.630 0.00 0.00 46.23 1.85
631 673 1.282248 CGAACGAGCAGCGGAAAAGA 61.282 55.000 4.06 0.00 46.49 2.52
646 689 0.603569 TTGGAGACTGGAGAGCGAAC 59.396 55.000 0.00 0.00 0.00 3.95
647 690 1.273606 CTTTGGAGACTGGAGAGCGAA 59.726 52.381 0.00 0.00 0.00 4.70
649 692 0.739112 GCTTTGGAGACTGGAGAGCG 60.739 60.000 0.00 0.00 0.00 5.03
650 693 0.612744 AGCTTTGGAGACTGGAGAGC 59.387 55.000 0.00 0.00 0.00 4.09
651 694 1.066286 CCAGCTTTGGAGACTGGAGAG 60.066 57.143 2.01 0.00 43.76 3.20
652 695 0.979665 CCAGCTTTGGAGACTGGAGA 59.020 55.000 2.01 0.00 43.76 3.71
771 824 2.190578 CCAGCCCACTCGGATTCC 59.809 66.667 0.00 0.00 0.00 3.01
865 927 1.441738 TCGATCGTGGTTCGTGAGTA 58.558 50.000 15.94 0.00 40.80 2.59
905 967 1.047739 GTTGTTCGATCGTCGTCGTT 58.952 50.000 15.94 0.00 41.35 3.85
1028 1090 0.534203 TCCTCCTTGTTCAACCGCAC 60.534 55.000 0.00 0.00 0.00 5.34
1066 1128 0.891373 ATGATATCCAGCTCCGACGG 59.109 55.000 7.84 7.84 0.00 4.79
1069 1131 2.174360 CTCCATGATATCCAGCTCCGA 58.826 52.381 0.00 0.00 0.00 4.55
1075 1137 5.105023 CCACATACTCCTCCATGATATCCAG 60.105 48.000 0.00 0.00 0.00 3.86
1095 1157 1.816863 GCTCCTTCACCGTCTCCACA 61.817 60.000 0.00 0.00 0.00 4.17
1147 1209 1.570857 ATGGGGAGCCAATCGTCCAA 61.571 55.000 0.00 0.00 36.11 3.53
1155 1217 2.308722 GGAGGTGATGGGGAGCCAA 61.309 63.158 0.00 0.00 0.00 4.52
1197 1259 1.890041 CACGTTGTGGAAGGCGGAA 60.890 57.895 0.00 0.00 0.00 4.30
1419 1481 3.518998 ACGACGATCCAGAGCCCG 61.519 66.667 0.00 0.00 0.00 6.13
1578 1640 1.000955 GAGAGCAGAAAGTGGACGGAA 59.999 52.381 0.00 0.00 0.00 4.30
2037 2102 2.202570 CCGATGACGTGGACGACC 60.203 66.667 6.12 0.00 43.02 4.79
2082 2147 1.135139 ACCGTCTCCATCATGTCGAAG 59.865 52.381 0.00 0.00 0.00 3.79
2220 2285 0.887387 CGAAGCCTCCGAAAAACCCA 60.887 55.000 0.00 0.00 0.00 4.51
2289 2354 3.781307 TATCTGGCGGGCTTGCGT 61.781 61.111 2.38 0.00 35.06 5.24
2379 2444 1.226660 GATGATTTGGCGCAACCCG 60.227 57.895 10.83 0.00 37.83 5.28
2412 2477 7.045416 TGTGTGCTTAAGAGTAGAACTTGAAA 58.955 34.615 6.67 0.00 0.00 2.69
2433 2498 9.823647 CCTAAATCATCTAATCTTGTACTGTGT 57.176 33.333 0.00 0.00 0.00 3.72
2456 2521 6.658849 TGTGCTTGCTAAATAAATCCTCCTA 58.341 36.000 0.00 0.00 0.00 2.94
2459 2524 9.455847 CTTATTGTGCTTGCTAAATAAATCCTC 57.544 33.333 11.41 0.00 0.00 3.71
2652 2717 7.094118 ACCGCCAAACTAATAAACAACATGTAT 60.094 33.333 0.00 0.00 0.00 2.29
2674 2739 2.561569 AGTTGCCACATTATCTACCGC 58.438 47.619 0.00 0.00 0.00 5.68
2676 2741 7.986085 ATATGAAGTTGCCACATTATCTACC 57.014 36.000 0.00 0.00 0.00 3.18
2689 2754 5.560148 CAACAACCGACTATATGAAGTTGC 58.440 41.667 0.00 0.00 38.47 4.17
2713 2778 7.012704 CCATGTAAAGATGGAAATGTGTCTAGG 59.987 40.741 0.00 0.00 45.24 3.02
2727 2792 5.287274 GCGAGACGATATCCATGTAAAGATG 59.713 44.000 0.00 0.00 0.00 2.90
2733 2798 3.408634 TCTGCGAGACGATATCCATGTA 58.591 45.455 0.00 0.00 0.00 2.29
2826 2891 6.443792 GGTTGGTTGTTTAGTGGAGTTATTG 58.556 40.000 0.00 0.00 0.00 1.90
2829 2894 4.128643 CGGTTGGTTGTTTAGTGGAGTTA 58.871 43.478 0.00 0.00 0.00 2.24
2949 3014 1.746991 CCTTCTTGAAGGCGCCTCC 60.747 63.158 32.93 20.64 32.43 4.30
2950 3015 0.107459 ATCCTTCTTGAAGGCGCCTC 60.107 55.000 32.93 22.94 39.80 4.70
2951 3016 1.134371 GTATCCTTCTTGAAGGCGCCT 60.134 52.381 27.08 27.08 39.80 5.52
2952 3017 1.300481 GTATCCTTCTTGAAGGCGCC 58.700 55.000 21.89 21.89 39.80 6.53
2953 3018 0.931005 CGTATCCTTCTTGAAGGCGC 59.069 55.000 21.16 0.00 39.80 6.53
2954 3019 1.571919 CCGTATCCTTCTTGAAGGCG 58.428 55.000 21.16 18.20 39.80 5.52
2955 3020 1.300481 GCCGTATCCTTCTTGAAGGC 58.700 55.000 21.16 8.52 39.80 4.35
2956 3021 2.280628 GTGCCGTATCCTTCTTGAAGG 58.719 52.381 20.21 20.21 41.35 3.46
2957 3022 2.280628 GGTGCCGTATCCTTCTTGAAG 58.719 52.381 3.55 3.55 0.00 3.02
2958 3023 1.404986 CGGTGCCGTATCCTTCTTGAA 60.405 52.381 1.93 0.00 34.35 2.69
2959 3024 0.174845 CGGTGCCGTATCCTTCTTGA 59.825 55.000 1.93 0.00 34.35 3.02
2960 3025 0.810031 CCGGTGCCGTATCCTTCTTG 60.810 60.000 9.90 0.00 37.81 3.02
2961 3026 0.974010 TCCGGTGCCGTATCCTTCTT 60.974 55.000 9.90 0.00 37.81 2.52
2962 3027 1.380785 TCCGGTGCCGTATCCTTCT 60.381 57.895 9.90 0.00 37.81 2.85
2963 3028 1.067582 CTCCGGTGCCGTATCCTTC 59.932 63.158 9.90 0.00 37.81 3.46
2964 3029 3.090219 GCTCCGGTGCCGTATCCTT 62.090 63.158 17.73 0.00 37.81 3.36
2965 3030 3.537874 GCTCCGGTGCCGTATCCT 61.538 66.667 17.73 0.00 37.81 3.24
2966 3031 4.944372 CGCTCCGGTGCCGTATCC 62.944 72.222 22.05 0.00 37.81 2.59
2989 3054 4.916314 ATCCTCGGATCGGGCGGT 62.916 66.667 0.00 0.00 0.00 5.68
2990 3055 4.057428 GATCCTCGGATCGGGCGG 62.057 72.222 9.99 2.31 41.09 6.13
2997 3062 2.436173 GGGAAAACTCTGATCCTCGGAT 59.564 50.000 0.00 0.00 37.59 4.18
2998 3063 1.831736 GGGAAAACTCTGATCCTCGGA 59.168 52.381 0.00 0.00 33.61 4.55
2999 3064 1.834263 AGGGAAAACTCTGATCCTCGG 59.166 52.381 0.00 0.00 33.61 4.63
3000 3065 2.419297 CCAGGGAAAACTCTGATCCTCG 60.419 54.545 0.00 0.00 33.61 4.63
3001 3066 2.840651 TCCAGGGAAAACTCTGATCCTC 59.159 50.000 0.00 0.00 33.61 3.71
3002 3067 2.843113 CTCCAGGGAAAACTCTGATCCT 59.157 50.000 0.00 0.00 33.61 3.24
3003 3068 2.682269 GCTCCAGGGAAAACTCTGATCC 60.682 54.545 0.00 0.00 33.11 3.36
3004 3069 2.026822 TGCTCCAGGGAAAACTCTGATC 60.027 50.000 0.00 0.00 33.11 2.92
3005 3070 1.988107 TGCTCCAGGGAAAACTCTGAT 59.012 47.619 0.00 0.00 33.11 2.90
3006 3071 1.434188 TGCTCCAGGGAAAACTCTGA 58.566 50.000 0.00 0.00 33.11 3.27
3007 3072 1.882623 GTTGCTCCAGGGAAAACTCTG 59.117 52.381 6.39 0.00 0.00 3.35
3008 3073 1.494721 TGTTGCTCCAGGGAAAACTCT 59.505 47.619 12.29 0.00 0.00 3.24
3009 3074 1.609072 GTGTTGCTCCAGGGAAAACTC 59.391 52.381 12.29 7.20 31.81 3.01
3010 3075 1.692411 GTGTTGCTCCAGGGAAAACT 58.308 50.000 12.29 0.00 31.81 2.66
3011 3076 0.310854 CGTGTTGCTCCAGGGAAAAC 59.689 55.000 6.61 6.61 31.26 2.43
3012 3077 0.181587 TCGTGTTGCTCCAGGGAAAA 59.818 50.000 0.00 0.00 0.00 2.29
3013 3078 0.400213 ATCGTGTTGCTCCAGGGAAA 59.600 50.000 0.00 0.00 0.00 3.13
3014 3079 0.321564 CATCGTGTTGCTCCAGGGAA 60.322 55.000 0.00 0.00 0.00 3.97
3015 3080 1.296392 CATCGTGTTGCTCCAGGGA 59.704 57.895 0.00 0.00 0.00 4.20
3016 3081 1.746615 CCATCGTGTTGCTCCAGGG 60.747 63.158 0.00 0.00 0.00 4.45
3017 3082 1.746615 CCCATCGTGTTGCTCCAGG 60.747 63.158 0.00 0.00 0.00 4.45
3018 3083 2.401766 GCCCATCGTGTTGCTCCAG 61.402 63.158 0.00 0.00 0.00 3.86
3019 3084 2.359850 GCCCATCGTGTTGCTCCA 60.360 61.111 0.00 0.00 0.00 3.86
3020 3085 2.359850 TGCCCATCGTGTTGCTCC 60.360 61.111 0.00 0.00 0.00 4.70
3021 3086 1.672356 ACTGCCCATCGTGTTGCTC 60.672 57.895 0.00 0.00 0.00 4.26
3022 3087 1.968017 CACTGCCCATCGTGTTGCT 60.968 57.895 0.00 0.00 0.00 3.91
3023 3088 1.308069 ATCACTGCCCATCGTGTTGC 61.308 55.000 0.00 0.00 33.07 4.17
3024 3089 1.935873 CTATCACTGCCCATCGTGTTG 59.064 52.381 0.00 0.00 33.07 3.33
3025 3090 1.555075 ACTATCACTGCCCATCGTGTT 59.445 47.619 0.00 0.00 33.07 3.32
3026 3091 1.137086 GACTATCACTGCCCATCGTGT 59.863 52.381 0.00 0.00 33.07 4.49
3027 3092 1.858091 GACTATCACTGCCCATCGTG 58.142 55.000 0.00 0.00 0.00 4.35
3028 3093 0.385751 CGACTATCACTGCCCATCGT 59.614 55.000 0.00 0.00 0.00 3.73
3029 3094 0.941463 GCGACTATCACTGCCCATCG 60.941 60.000 0.00 0.00 0.00 3.84
3030 3095 0.941463 CGCGACTATCACTGCCCATC 60.941 60.000 0.00 0.00 0.00 3.51
3031 3096 1.068083 CGCGACTATCACTGCCCAT 59.932 57.895 0.00 0.00 0.00 4.00
3032 3097 2.049767 TCGCGACTATCACTGCCCA 61.050 57.895 3.71 0.00 0.00 5.36
3033 3098 1.589196 GTCGCGACTATCACTGCCC 60.589 63.158 31.12 0.00 0.00 5.36
3034 3099 1.939785 CGTCGCGACTATCACTGCC 60.940 63.158 33.94 6.82 0.00 4.85
3035 3100 1.062047 TCGTCGCGACTATCACTGC 59.938 57.895 33.94 7.59 0.00 4.40
3048 3113 1.344942 CCTTCTTGAAGGCGTCGTCG 61.345 60.000 15.43 0.00 40.37 5.12
3049 3114 1.014564 CCCTTCTTGAAGGCGTCGTC 61.015 60.000 20.71 0.00 38.63 4.20
3050 3115 1.004918 CCCTTCTTGAAGGCGTCGT 60.005 57.895 20.71 0.00 38.63 4.34
3051 3116 0.737715 CTCCCTTCTTGAAGGCGTCG 60.738 60.000 20.71 9.66 38.63 5.12
3052 3117 1.021920 GCTCCCTTCTTGAAGGCGTC 61.022 60.000 20.71 9.58 38.63 5.19
3053 3118 1.003233 GCTCCCTTCTTGAAGGCGT 60.003 57.895 20.71 0.00 38.63 5.68
3054 3119 2.103042 CGCTCCCTTCTTGAAGGCG 61.103 63.158 20.71 17.24 38.63 5.52
3055 3120 0.107459 ATCGCTCCCTTCTTGAAGGC 60.107 55.000 20.71 10.77 38.63 4.35
3056 3121 1.484240 AGATCGCTCCCTTCTTGAAGG 59.516 52.381 19.53 19.53 39.68 3.46
3057 3122 2.977772 AGATCGCTCCCTTCTTGAAG 57.022 50.000 3.55 3.55 0.00 3.02
3058 3123 2.417379 CGAAGATCGCTCCCTTCTTGAA 60.417 50.000 0.00 0.00 37.29 2.69
3059 3124 1.135139 CGAAGATCGCTCCCTTCTTGA 59.865 52.381 0.00 0.00 37.29 3.02
3060 3125 1.565305 CGAAGATCGCTCCCTTCTTG 58.435 55.000 0.00 0.00 37.29 3.02
3071 3136 4.847516 TGGCGACGGCGAAGATCG 62.848 66.667 18.90 14.10 43.89 3.69
3072 3137 2.956964 CTGGCGACGGCGAAGATC 60.957 66.667 18.90 0.00 41.24 2.75
3073 3138 3.701604 GACTGGCGACGGCGAAGAT 62.702 63.158 18.90 1.40 41.93 2.40
3074 3139 4.415332 GACTGGCGACGGCGAAGA 62.415 66.667 18.90 0.00 41.93 2.87
3082 3147 3.966026 CTTCGGACGGACTGGCGAC 62.966 68.421 0.00 0.00 0.00 5.19
3083 3148 3.744719 CTTCGGACGGACTGGCGA 61.745 66.667 0.00 0.00 0.00 5.54
3084 3149 1.721664 TATCTTCGGACGGACTGGCG 61.722 60.000 0.00 0.00 0.00 5.69
3085 3150 0.030908 CTATCTTCGGACGGACTGGC 59.969 60.000 0.00 0.00 0.00 4.85
3086 3151 1.604755 CTCTATCTTCGGACGGACTGG 59.395 57.143 0.00 0.00 0.00 4.00
3087 3152 2.546368 CTCTCTATCTTCGGACGGACTG 59.454 54.545 0.00 0.00 0.00 3.51
3088 3153 2.485835 CCTCTCTATCTTCGGACGGACT 60.486 54.545 0.00 0.00 0.00 3.85
3089 3154 1.874872 CCTCTCTATCTTCGGACGGAC 59.125 57.143 0.00 0.00 0.00 4.79
3090 3155 1.489649 ACCTCTCTATCTTCGGACGGA 59.510 52.381 0.00 0.00 0.00 4.69
3091 3156 1.970092 ACCTCTCTATCTTCGGACGG 58.030 55.000 0.00 0.00 0.00 4.79
3092 3157 4.142447 TGAAAACCTCTCTATCTTCGGACG 60.142 45.833 0.00 0.00 0.00 4.79
3093 3158 5.103687 GTGAAAACCTCTCTATCTTCGGAC 58.896 45.833 0.00 0.00 0.00 4.79
3094 3159 4.159879 GGTGAAAACCTCTCTATCTTCGGA 59.840 45.833 0.00 0.00 0.00 4.55
3095 3160 4.434520 GGTGAAAACCTCTCTATCTTCGG 58.565 47.826 0.00 0.00 0.00 4.30
3096 3161 4.434520 GGGTGAAAACCTCTCTATCTTCG 58.565 47.826 0.00 0.00 0.00 3.79
3097 3162 4.680975 CGGGGTGAAAACCTCTCTATCTTC 60.681 50.000 0.00 0.00 0.00 2.87
3098 3163 3.197983 CGGGGTGAAAACCTCTCTATCTT 59.802 47.826 0.00 0.00 0.00 2.40
3099 3164 2.766828 CGGGGTGAAAACCTCTCTATCT 59.233 50.000 0.00 0.00 0.00 1.98
3100 3165 2.158943 CCGGGGTGAAAACCTCTCTATC 60.159 54.545 0.00 0.00 0.00 2.08
3101 3166 1.838077 CCGGGGTGAAAACCTCTCTAT 59.162 52.381 0.00 0.00 0.00 1.98
3102 3167 1.272807 CCGGGGTGAAAACCTCTCTA 58.727 55.000 0.00 0.00 0.00 2.43
3103 3168 2.067197 CCGGGGTGAAAACCTCTCT 58.933 57.895 0.00 0.00 0.00 3.10
3104 3169 1.674651 GCCGGGGTGAAAACCTCTC 60.675 63.158 2.18 0.00 0.00 3.20
3105 3170 2.434774 GCCGGGGTGAAAACCTCT 59.565 61.111 2.18 0.00 0.00 3.69
3106 3171 2.675423 GGCCGGGGTGAAAACCTC 60.675 66.667 2.18 0.00 0.00 3.85
3107 3172 3.076217 TTGGCCGGGGTGAAAACCT 62.076 57.895 2.18 0.00 0.00 3.50
3108 3173 2.522193 TTGGCCGGGGTGAAAACC 60.522 61.111 2.18 0.00 0.00 3.27
3109 3174 2.128507 TGTTGGCCGGGGTGAAAAC 61.129 57.895 2.18 0.00 0.00 2.43
3110 3175 2.128507 GTGTTGGCCGGGGTGAAAA 61.129 57.895 2.18 0.00 0.00 2.29
3111 3176 2.519780 GTGTTGGCCGGGGTGAAA 60.520 61.111 2.18 0.00 0.00 2.69
3112 3177 3.810188 TGTGTTGGCCGGGGTGAA 61.810 61.111 2.18 0.00 0.00 3.18
3113 3178 4.572571 GTGTGTTGGCCGGGGTGA 62.573 66.667 2.18 0.00 0.00 4.02
3114 3179 4.885270 TGTGTGTTGGCCGGGGTG 62.885 66.667 2.18 0.00 0.00 4.61
3115 3180 4.887190 GTGTGTGTTGGCCGGGGT 62.887 66.667 2.18 0.00 0.00 4.95
3121 3186 4.264638 GTGGCGGTGTGTGTTGGC 62.265 66.667 0.00 0.00 0.00 4.52
3122 3187 3.591835 GGTGGCGGTGTGTGTTGG 61.592 66.667 0.00 0.00 0.00 3.77
3123 3188 3.947841 CGGTGGCGGTGTGTGTTG 61.948 66.667 0.00 0.00 0.00 3.33
3124 3189 3.683966 TTCGGTGGCGGTGTGTGTT 62.684 57.895 0.00 0.00 0.00 3.32
3125 3190 4.164087 TTCGGTGGCGGTGTGTGT 62.164 61.111 0.00 0.00 0.00 3.72
3126 3191 3.645975 GTTCGGTGGCGGTGTGTG 61.646 66.667 0.00 0.00 0.00 3.82
3134 3199 3.799755 GATGTGGCGTTCGGTGGC 61.800 66.667 0.00 0.00 0.00 5.01
3135 3200 3.124921 GGATGTGGCGTTCGGTGG 61.125 66.667 0.00 0.00 0.00 4.61
3136 3201 3.124921 GGGATGTGGCGTTCGGTG 61.125 66.667 0.00 0.00 0.00 4.94
3137 3202 4.752879 CGGGATGTGGCGTTCGGT 62.753 66.667 0.00 0.00 0.00 4.69
3145 3210 2.189521 GTGGTAGCCGGGATGTGG 59.810 66.667 2.18 0.00 0.00 4.17
3146 3211 2.202878 CGTGGTAGCCGGGATGTG 60.203 66.667 2.18 0.00 0.00 3.21
3147 3212 4.157120 GCGTGGTAGCCGGGATGT 62.157 66.667 2.18 0.00 0.00 3.06
3175 3240 4.814294 CTACCCGGCTGCCACGAC 62.814 72.222 20.29 0.00 0.00 4.34
3178 3243 4.840005 GAGCTACCCGGCTGCCAC 62.840 72.222 20.29 0.13 43.20 5.01
3187 3252 2.579684 CTTGTGCCTCGGAGCTACCC 62.580 65.000 0.00 0.00 34.64 3.69
3188 3253 1.153549 CTTGTGCCTCGGAGCTACC 60.154 63.158 0.00 0.00 0.00 3.18
3189 3254 1.811679 GCTTGTGCCTCGGAGCTAC 60.812 63.158 0.00 1.41 32.54 3.58
3190 3255 1.949847 GAGCTTGTGCCTCGGAGCTA 61.950 60.000 0.00 0.00 44.88 3.32
3191 3256 3.317571 AGCTTGTGCCTCGGAGCT 61.318 61.111 0.00 0.00 40.44 4.09
3192 3257 2.817396 GAGCTTGTGCCTCGGAGC 60.817 66.667 0.00 0.00 40.80 4.70
3193 3258 1.447489 CAGAGCTTGTGCCTCGGAG 60.447 63.158 0.00 0.00 40.80 4.63
3194 3259 2.659016 CAGAGCTTGTGCCTCGGA 59.341 61.111 0.00 0.00 40.80 4.55
3195 3260 3.123620 GCAGAGCTTGTGCCTCGG 61.124 66.667 10.22 0.00 40.80 4.63
3200 3265 1.654954 CTCATGGGCAGAGCTTGTGC 61.655 60.000 12.45 12.45 40.42 4.57
3201 3266 2.478989 CTCATGGGCAGAGCTTGTG 58.521 57.895 0.00 0.00 0.00 3.33
3207 3272 2.513204 CGGTGCTCATGGGCAGAG 60.513 66.667 23.56 14.42 43.25 3.35
3208 3273 4.783621 GCGGTGCTCATGGGCAGA 62.784 66.667 23.56 0.00 43.25 4.26
3246 3311 2.513897 GTCTTGGATTCCGGGGCG 60.514 66.667 0.00 0.00 0.00 6.13
3247 3312 2.124278 GGTCTTGGATTCCGGGGC 60.124 66.667 0.00 0.00 0.00 5.80
3248 3313 0.394352 CAAGGTCTTGGATTCCGGGG 60.394 60.000 0.00 0.00 36.95 5.73
3249 3314 0.618458 TCAAGGTCTTGGATTCCGGG 59.382 55.000 0.00 0.00 40.78 5.73
3250 3315 1.003118 TGTCAAGGTCTTGGATTCCGG 59.997 52.381 10.39 0.00 40.78 5.14
3251 3316 2.076863 GTGTCAAGGTCTTGGATTCCG 58.923 52.381 10.39 0.00 40.78 4.30
3252 3317 2.224769 TGGTGTCAAGGTCTTGGATTCC 60.225 50.000 10.39 0.00 40.78 3.01
3253 3318 3.140325 TGGTGTCAAGGTCTTGGATTC 57.860 47.619 10.39 1.10 40.78 2.52
3254 3319 3.490348 CTTGGTGTCAAGGTCTTGGATT 58.510 45.455 10.39 0.00 44.89 3.01
3255 3320 3.146104 CTTGGTGTCAAGGTCTTGGAT 57.854 47.619 10.39 0.00 44.89 3.41
3256 3321 2.638480 CTTGGTGTCAAGGTCTTGGA 57.362 50.000 10.39 0.00 44.89 3.53
3265 3330 2.111999 CTCGGAGGGCTTGGTGTCAA 62.112 60.000 0.00 0.00 0.00 3.18
3266 3331 2.525629 TCGGAGGGCTTGGTGTCA 60.526 61.111 0.00 0.00 0.00 3.58
3267 3332 2.266055 CTCGGAGGGCTTGGTGTC 59.734 66.667 0.00 0.00 0.00 3.67
3268 3333 4.021925 GCTCGGAGGGCTTGGTGT 62.022 66.667 7.20 0.00 0.00 4.16
3269 3334 4.785453 GGCTCGGAGGGCTTGGTG 62.785 72.222 7.20 0.00 0.00 4.17
3278 3343 2.131709 TTATCGGTGGGGCTCGGAG 61.132 63.158 0.00 0.00 0.00 4.63
3279 3344 2.042741 TTATCGGTGGGGCTCGGA 60.043 61.111 0.00 0.00 0.00 4.55
3280 3345 2.108362 GTTATCGGTGGGGCTCGG 59.892 66.667 0.00 0.00 0.00 4.63
3281 3346 2.108362 GGTTATCGGTGGGGCTCG 59.892 66.667 0.00 0.00 0.00 5.03
3282 3347 1.917336 TTGGGTTATCGGTGGGGCTC 61.917 60.000 0.00 0.00 0.00 4.70
3283 3348 1.926489 TTGGGTTATCGGTGGGGCT 60.926 57.895 0.00 0.00 0.00 5.19
3284 3349 1.751544 GTTGGGTTATCGGTGGGGC 60.752 63.158 0.00 0.00 0.00 5.80
3285 3350 1.077285 GGTTGGGTTATCGGTGGGG 60.077 63.158 0.00 0.00 0.00 4.96
3286 3351 1.450669 CGGTTGGGTTATCGGTGGG 60.451 63.158 0.00 0.00 0.00 4.61
3287 3352 2.110352 GCGGTTGGGTTATCGGTGG 61.110 63.158 0.00 0.00 0.00 4.61
3288 3353 1.366111 CTGCGGTTGGGTTATCGGTG 61.366 60.000 0.00 0.00 0.00 4.94
3289 3354 1.078708 CTGCGGTTGGGTTATCGGT 60.079 57.895 0.00 0.00 0.00 4.69
3290 3355 0.810031 CTCTGCGGTTGGGTTATCGG 60.810 60.000 0.00 0.00 0.00 4.18
3291 3356 0.174845 TCTCTGCGGTTGGGTTATCG 59.825 55.000 0.00 0.00 0.00 2.92
3292 3357 1.066430 TGTCTCTGCGGTTGGGTTATC 60.066 52.381 0.00 0.00 0.00 1.75
3293 3358 0.981183 TGTCTCTGCGGTTGGGTTAT 59.019 50.000 0.00 0.00 0.00 1.89
3294 3359 0.320374 CTGTCTCTGCGGTTGGGTTA 59.680 55.000 0.00 0.00 0.00 2.85
3295 3360 1.071471 CTGTCTCTGCGGTTGGGTT 59.929 57.895 0.00 0.00 0.00 4.11
3296 3361 2.743718 CTGTCTCTGCGGTTGGGT 59.256 61.111 0.00 0.00 0.00 4.51
3297 3362 2.046892 CCTGTCTCTGCGGTTGGG 60.047 66.667 0.00 0.00 0.00 4.12
3298 3363 2.743928 GCCTGTCTCTGCGGTTGG 60.744 66.667 0.00 0.00 0.00 3.77
3299 3364 3.114616 CGCCTGTCTCTGCGGTTG 61.115 66.667 0.00 0.00 46.65 3.77
3304 3369 1.743252 CCTTTCCGCCTGTCTCTGC 60.743 63.158 0.00 0.00 0.00 4.26
3305 3370 1.743252 GCCTTTCCGCCTGTCTCTG 60.743 63.158 0.00 0.00 0.00 3.35
3306 3371 1.893919 GAGCCTTTCCGCCTGTCTCT 61.894 60.000 0.00 0.00 0.00 3.10
3307 3372 1.448717 GAGCCTTTCCGCCTGTCTC 60.449 63.158 0.00 0.00 0.00 3.36
3308 3373 2.665603 GAGCCTTTCCGCCTGTCT 59.334 61.111 0.00 0.00 0.00 3.41
3309 3374 2.436824 GGAGCCTTTCCGCCTGTC 60.437 66.667 0.00 0.00 35.91 3.51
3350 3415 2.978452 CTATTGGGTCTCGGCGCTGG 62.978 65.000 17.88 7.41 0.00 4.85
3351 3416 1.592669 CTATTGGGTCTCGGCGCTG 60.593 63.158 10.86 10.86 0.00 5.18
3352 3417 2.797278 CCTATTGGGTCTCGGCGCT 61.797 63.158 7.64 0.00 0.00 5.92
3353 3418 2.280186 CCTATTGGGTCTCGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
3354 3419 2.280186 GCCTATTGGGTCTCGGCG 60.280 66.667 0.00 0.00 37.43 6.46
3355 3420 2.111251 GGCCTATTGGGTCTCGGC 59.889 66.667 0.00 0.00 36.61 5.54
3356 3421 2.421739 CGGCCTATTGGGTCTCGG 59.578 66.667 0.00 0.00 37.61 4.63
3357 3422 2.421739 CCGGCCTATTGGGTCTCG 59.578 66.667 0.00 0.00 37.61 4.04
3358 3423 2.111251 GCCGGCCTATTGGGTCTC 59.889 66.667 18.11 0.00 37.61 3.36
3359 3424 3.861797 CGCCGGCCTATTGGGTCT 61.862 66.667 23.46 0.00 37.61 3.85
3360 3425 3.857038 TCGCCGGCCTATTGGGTC 61.857 66.667 23.46 0.00 37.43 4.46
3361 3426 4.171103 GTCGCCGGCCTATTGGGT 62.171 66.667 23.46 0.00 37.43 4.51
3362 3427 3.690685 TTGTCGCCGGCCTATTGGG 62.691 63.158 23.46 4.61 38.36 4.12
3363 3428 2.124901 TTGTCGCCGGCCTATTGG 60.125 61.111 23.46 5.48 0.00 3.16
3364 3429 2.823829 GCTTGTCGCCGGCCTATTG 61.824 63.158 23.46 6.36 0.00 1.90
3365 3430 2.513897 GCTTGTCGCCGGCCTATT 60.514 61.111 23.46 0.00 0.00 1.73
3374 3439 1.880340 CTCGATGGAGGCTTGTCGC 60.880 63.158 10.86 0.00 36.61 5.19
3375 3440 1.880340 GCTCGATGGAGGCTTGTCG 60.880 63.158 6.88 9.81 40.80 4.35
3376 3441 4.116878 GCTCGATGGAGGCTTGTC 57.883 61.111 6.88 0.00 40.80 3.18
3382 3447 2.835431 AGGACGGCTCGATGGAGG 60.835 66.667 6.88 0.00 40.80 4.30
3383 3448 2.415010 CAGGACGGCTCGATGGAG 59.585 66.667 0.00 0.00 43.46 3.86
3384 3449 3.838271 GCAGGACGGCTCGATGGA 61.838 66.667 1.50 0.00 0.00 3.41
3386 3451 4.193334 TCGCAGGACGGCTCGATG 62.193 66.667 1.50 0.00 43.89 3.84
3387 3452 4.194720 GTCGCAGGACGGCTCGAT 62.195 66.667 4.37 0.00 45.03 3.59
3413 3478 3.805307 AGGACTGCGCTCGTCTCG 61.805 66.667 22.99 2.32 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.