Multiple sequence alignment - TraesCS1A01G058700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G058700 chr1A 100.000 3277 0 0 1 3277 39411027 39407751 0.000000e+00 6052
1 TraesCS1A01G058700 chr1A 93.220 177 12 0 3027 3203 39407944 39407768 9.020000e-66 261
2 TraesCS1A01G058700 chr1A 93.220 177 12 0 3084 3260 39408001 39407825 9.020000e-66 261
3 TraesCS1A01G058700 chr1A 93.431 137 8 1 1 137 574125602 574125737 5.540000e-48 202
4 TraesCS1A01G058700 chr1A 93.162 117 8 0 3030 3146 39407884 39407768 4.350000e-39 172
5 TraesCS1A01G058700 chr1A 93.162 117 8 0 3144 3260 39407998 39407882 4.350000e-39 172
6 TraesCS1A01G058700 chr1D 91.148 1751 65 27 614 2284 39950931 39949191 0.000000e+00 2292
7 TraesCS1A01G058700 chr1D 92.013 626 38 8 2587 3204 39948766 39948145 0.000000e+00 869
8 TraesCS1A01G058700 chr1D 93.046 302 16 2 205 505 39951309 39951012 1.400000e-118 436
9 TraesCS1A01G058700 chr1D 94.037 218 13 0 2353 2570 39949149 39948932 6.780000e-87 331
10 TraesCS1A01G058700 chr1D 94.330 194 11 0 3084 3277 39948322 39948129 6.870000e-77 298
11 TraesCS1A01G058700 chr1D 98.230 113 2 0 3144 3256 39948319 39948207 7.170000e-47 198
12 TraesCS1A01G058700 chr1D 94.215 121 7 0 3027 3147 39948265 39948145 5.580000e-43 185
13 TraesCS1A01G058700 chr1B 89.676 1821 71 35 556 2284 59604335 59602540 0.000000e+00 2213
14 TraesCS1A01G058700 chr1B 89.202 852 52 14 2365 3203 59602486 59601662 0.000000e+00 1027
15 TraesCS1A01G058700 chr1B 90.000 300 17 7 215 513 59604641 59604354 3.090000e-100 375
16 TraesCS1A01G058700 chr1B 94.845 194 10 0 3084 3277 59601838 59601645 1.480000e-78 303
17 TraesCS1A01G058700 chr1B 93.333 120 8 0 3027 3146 59601781 59601662 9.340000e-41 178
18 TraesCS1A01G058700 chr1B 94.643 112 6 0 3144 3255 59601835 59601724 1.210000e-39 174
19 TraesCS1A01G058700 chr5B 93.919 148 9 0 1 148 662046835 662046982 1.180000e-54 224
20 TraesCS1A01G058700 chr2B 96.324 136 5 0 1 136 780230924 780231059 1.180000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G058700 chr1A 39407751 39411027 3276 True 1383.600000 6052 94.552800 1 3277 5 chr1A.!!$R1 3276
1 TraesCS1A01G058700 chr1D 39948129 39951309 3180 True 658.428571 2292 93.859857 205 3277 7 chr1D.!!$R1 3072
2 TraesCS1A01G058700 chr1B 59601645 59604641 2996 True 711.666667 2213 91.949833 215 3277 6 chr1B.!!$R1 3062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 572 0.106569 TCTCTTACGGCCGGGATGTA 60.107 55.0 31.76 9.51 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2314 2466 0.03563 ACAAGCACATCTCCAGGAGC 60.036 55.0 12.26 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.508648 GTTTGCATGCATGTGACAAAC 57.491 42.857 29.18 29.18 38.09 2.93
21 22 3.125316 GTTTGCATGCATGTGACAAACT 58.875 40.909 32.22 0.00 39.79 2.66
22 23 3.455990 TTGCATGCATGTGACAAACTT 57.544 38.095 26.79 0.00 0.00 2.66
23 24 3.015934 TGCATGCATGTGACAAACTTC 57.984 42.857 26.79 7.53 0.00 3.01
24 25 2.288334 TGCATGCATGTGACAAACTTCC 60.288 45.455 26.79 7.03 0.00 3.46
25 26 2.927871 GCATGCATGTGACAAACTTCCC 60.928 50.000 26.79 2.60 0.00 3.97
26 27 0.950836 TGCATGTGACAAACTTCCCG 59.049 50.000 0.00 0.00 0.00 5.14
27 28 0.951558 GCATGTGACAAACTTCCCGT 59.048 50.000 0.00 0.00 0.00 5.28
28 29 2.147958 GCATGTGACAAACTTCCCGTA 58.852 47.619 0.00 0.00 0.00 4.02
29 30 2.159627 GCATGTGACAAACTTCCCGTAG 59.840 50.000 0.00 0.00 0.00 3.51
54 55 4.403137 GGCTGCATGCGCGTTTGA 62.403 61.111 22.03 0.53 44.05 2.69
55 56 2.202518 GCTGCATGCGCGTTTGAT 60.203 55.556 14.09 0.00 42.97 2.57
56 57 1.062365 GCTGCATGCGCGTTTGATA 59.938 52.632 14.09 0.00 42.97 2.15
57 58 0.523125 GCTGCATGCGCGTTTGATAA 60.523 50.000 14.09 0.00 42.97 1.75
58 59 1.893759 CTGCATGCGCGTTTGATAAA 58.106 45.000 14.09 0.00 42.97 1.40
59 60 1.578915 CTGCATGCGCGTTTGATAAAC 59.421 47.619 14.09 0.00 42.97 2.01
60 61 1.068954 TGCATGCGCGTTTGATAAACA 60.069 42.857 14.09 0.00 42.97 2.83
61 62 1.982223 GCATGCGCGTTTGATAAACAA 59.018 42.857 8.43 0.00 41.44 2.83
62 63 2.598192 GCATGCGCGTTTGATAAACAAT 59.402 40.909 8.43 0.00 41.44 2.71
63 64 3.539975 GCATGCGCGTTTGATAAACAATG 60.540 43.478 8.43 0.00 41.44 2.82
64 65 1.982223 TGCGCGTTTGATAAACAATGC 59.018 42.857 8.43 5.70 41.44 3.56
67 68 3.600026 GCGTTTGATAAACAATGCGTG 57.400 42.857 5.42 0.00 41.44 5.34
68 69 3.230355 GCGTTTGATAAACAATGCGTGA 58.770 40.909 5.42 0.00 41.44 4.35
69 70 3.851403 GCGTTTGATAAACAATGCGTGAT 59.149 39.130 5.42 0.00 41.44 3.06
70 71 4.323336 GCGTTTGATAAACAATGCGTGATT 59.677 37.500 5.42 0.00 41.44 2.57
71 72 5.509972 GCGTTTGATAAACAATGCGTGATTA 59.490 36.000 5.42 0.00 41.44 1.75
72 73 6.290540 GCGTTTGATAAACAATGCGTGATTAG 60.291 38.462 5.42 0.00 41.44 1.73
73 74 6.740905 CGTTTGATAAACAATGCGTGATTAGT 59.259 34.615 5.42 0.00 41.44 2.24
74 75 7.270365 CGTTTGATAAACAATGCGTGATTAGTT 59.730 33.333 5.42 0.00 41.44 2.24
75 76 8.365210 GTTTGATAAACAATGCGTGATTAGTTG 58.635 33.333 0.00 0.00 41.04 3.16
76 77 7.139896 TGATAAACAATGCGTGATTAGTTGT 57.860 32.000 0.00 0.00 34.74 3.32
77 78 7.020602 TGATAAACAATGCGTGATTAGTTGTG 58.979 34.615 0.00 0.00 33.67 3.33
78 79 4.829064 AACAATGCGTGATTAGTTGTGT 57.171 36.364 0.00 0.00 33.67 3.72
79 80 4.829064 ACAATGCGTGATTAGTTGTGTT 57.171 36.364 0.00 0.00 32.30 3.32
80 81 5.933187 ACAATGCGTGATTAGTTGTGTTA 57.067 34.783 0.00 0.00 32.30 2.41
81 82 5.927030 ACAATGCGTGATTAGTTGTGTTAG 58.073 37.500 0.00 0.00 32.30 2.34
82 83 5.106712 ACAATGCGTGATTAGTTGTGTTAGG 60.107 40.000 0.00 0.00 32.30 2.69
83 84 4.260139 TGCGTGATTAGTTGTGTTAGGA 57.740 40.909 0.00 0.00 0.00 2.94
84 85 4.827692 TGCGTGATTAGTTGTGTTAGGAT 58.172 39.130 0.00 0.00 0.00 3.24
85 86 4.868171 TGCGTGATTAGTTGTGTTAGGATC 59.132 41.667 0.00 0.00 0.00 3.36
86 87 4.026804 GCGTGATTAGTTGTGTTAGGATCG 60.027 45.833 0.00 0.00 0.00 3.69
87 88 5.100259 CGTGATTAGTTGTGTTAGGATCGT 58.900 41.667 0.00 0.00 0.00 3.73
88 89 5.229469 CGTGATTAGTTGTGTTAGGATCGTC 59.771 44.000 0.00 0.00 0.00 4.20
89 90 5.519206 GTGATTAGTTGTGTTAGGATCGTCC 59.481 44.000 0.00 0.00 36.58 4.79
90 91 2.649331 AGTTGTGTTAGGATCGTCCG 57.351 50.000 0.00 0.00 42.75 4.79
91 92 1.203994 AGTTGTGTTAGGATCGTCCGG 59.796 52.381 0.00 0.00 42.75 5.14
92 93 1.203052 GTTGTGTTAGGATCGTCCGGA 59.797 52.381 0.00 0.00 42.75 5.14
93 94 1.771565 TGTGTTAGGATCGTCCGGAT 58.228 50.000 7.81 0.00 42.75 4.18
94 95 2.934887 TGTGTTAGGATCGTCCGGATA 58.065 47.619 7.81 0.00 42.75 2.59
95 96 3.493334 TGTGTTAGGATCGTCCGGATAT 58.507 45.455 7.81 4.38 42.75 1.63
96 97 4.654915 TGTGTTAGGATCGTCCGGATATA 58.345 43.478 7.81 0.00 42.75 0.86
97 98 5.258841 TGTGTTAGGATCGTCCGGATATAT 58.741 41.667 7.81 0.89 42.75 0.86
98 99 5.713389 TGTGTTAGGATCGTCCGGATATATT 59.287 40.000 7.81 0.00 42.75 1.28
99 100 6.034591 GTGTTAGGATCGTCCGGATATATTG 58.965 44.000 7.81 0.00 42.75 1.90
100 101 3.802948 AGGATCGTCCGGATATATTGC 57.197 47.619 7.81 0.00 42.75 3.56
101 102 3.366396 AGGATCGTCCGGATATATTGCT 58.634 45.455 7.81 0.00 42.75 3.91
102 103 3.769844 AGGATCGTCCGGATATATTGCTT 59.230 43.478 7.81 0.00 42.75 3.91
103 104 4.954202 AGGATCGTCCGGATATATTGCTTA 59.046 41.667 7.81 0.00 42.75 3.09
104 105 5.421056 AGGATCGTCCGGATATATTGCTTAA 59.579 40.000 7.81 0.00 42.75 1.85
105 106 6.070995 AGGATCGTCCGGATATATTGCTTAAA 60.071 38.462 7.81 0.00 42.75 1.52
106 107 6.761714 GGATCGTCCGGATATATTGCTTAAAT 59.238 38.462 7.81 0.00 34.82 1.40
107 108 7.280205 GGATCGTCCGGATATATTGCTTAAATT 59.720 37.037 7.81 0.00 34.82 1.82
108 109 7.591006 TCGTCCGGATATATTGCTTAAATTC 57.409 36.000 7.81 0.00 0.00 2.17
109 110 7.156000 TCGTCCGGATATATTGCTTAAATTCA 58.844 34.615 7.81 0.00 0.00 2.57
110 111 7.330946 TCGTCCGGATATATTGCTTAAATTCAG 59.669 37.037 7.81 0.00 0.00 3.02
111 112 7.330946 CGTCCGGATATATTGCTTAAATTCAGA 59.669 37.037 7.81 0.00 0.00 3.27
112 113 8.443937 GTCCGGATATATTGCTTAAATTCAGAC 58.556 37.037 7.81 0.00 0.00 3.51
113 114 8.375506 TCCGGATATATTGCTTAAATTCAGACT 58.624 33.333 0.00 0.00 0.00 3.24
114 115 8.446273 CCGGATATATTGCTTAAATTCAGACTG 58.554 37.037 0.00 0.00 0.00 3.51
115 116 8.993121 CGGATATATTGCTTAAATTCAGACTGT 58.007 33.333 1.59 0.00 0.00 3.55
119 120 5.356882 TTGCTTAAATTCAGACTGTTCGG 57.643 39.130 1.59 0.00 0.00 4.30
120 121 4.637276 TGCTTAAATTCAGACTGTTCGGA 58.363 39.130 1.59 0.00 0.00 4.55
121 122 5.060506 TGCTTAAATTCAGACTGTTCGGAA 58.939 37.500 1.59 0.00 39.81 4.30
122 123 5.179368 TGCTTAAATTCAGACTGTTCGGAAG 59.821 40.000 1.59 4.03 39.02 3.46
123 124 5.179555 GCTTAAATTCAGACTGTTCGGAAGT 59.820 40.000 1.59 0.00 39.02 3.01
124 125 6.293462 GCTTAAATTCAGACTGTTCGGAAGTT 60.293 38.462 1.59 5.74 43.53 2.66
125 126 7.095355 GCTTAAATTCAGACTGTTCGGAAGTTA 60.095 37.037 1.59 4.18 40.77 2.24
126 127 6.787085 AAATTCAGACTGTTCGGAAGTTAG 57.213 37.500 1.59 0.00 40.77 2.34
127 128 3.936372 TCAGACTGTTCGGAAGTTAGG 57.064 47.619 1.59 0.00 0.00 2.69
128 129 2.029290 TCAGACTGTTCGGAAGTTAGGC 60.029 50.000 1.59 0.00 0.00 3.93
129 130 1.275573 AGACTGTTCGGAAGTTAGGCC 59.724 52.381 0.00 0.00 0.00 5.19
130 131 1.001633 GACTGTTCGGAAGTTAGGCCA 59.998 52.381 5.01 0.00 0.00 5.36
131 132 1.270678 ACTGTTCGGAAGTTAGGCCAC 60.271 52.381 5.01 0.00 0.00 5.01
132 133 1.002087 CTGTTCGGAAGTTAGGCCACT 59.998 52.381 5.01 0.00 0.00 4.00
133 134 1.001633 TGTTCGGAAGTTAGGCCACTC 59.998 52.381 5.01 0.00 0.00 3.51
134 135 0.611714 TTCGGAAGTTAGGCCACTCC 59.388 55.000 5.01 1.75 0.00 3.85
136 137 0.613777 CGGAAGTTAGGCCACTCCTT 59.386 55.000 5.01 0.38 44.75 3.36
137 138 1.003233 CGGAAGTTAGGCCACTCCTTT 59.997 52.381 5.01 0.00 44.75 3.11
138 139 2.552373 CGGAAGTTAGGCCACTCCTTTT 60.552 50.000 5.01 0.00 44.75 2.27
139 140 3.082548 GGAAGTTAGGCCACTCCTTTTC 58.917 50.000 5.01 0.00 44.75 2.29
140 141 3.244946 GGAAGTTAGGCCACTCCTTTTCT 60.245 47.826 5.01 0.00 44.75 2.52
141 142 4.019591 GGAAGTTAGGCCACTCCTTTTCTA 60.020 45.833 5.01 0.00 44.75 2.10
142 143 5.514310 GGAAGTTAGGCCACTCCTTTTCTAA 60.514 44.000 5.01 0.00 44.75 2.10
143 144 5.578157 AGTTAGGCCACTCCTTTTCTAAA 57.422 39.130 5.01 0.00 44.75 1.85
144 145 6.140968 AGTTAGGCCACTCCTTTTCTAAAT 57.859 37.500 5.01 0.00 44.75 1.40
145 146 6.552932 AGTTAGGCCACTCCTTTTCTAAATT 58.447 36.000 5.01 0.00 44.75 1.82
146 147 7.696017 AGTTAGGCCACTCCTTTTCTAAATTA 58.304 34.615 5.01 0.00 44.75 1.40
147 148 8.336987 AGTTAGGCCACTCCTTTTCTAAATTAT 58.663 33.333 5.01 0.00 44.75 1.28
148 149 8.406297 GTTAGGCCACTCCTTTTCTAAATTATG 58.594 37.037 5.01 0.00 44.75 1.90
149 150 6.494059 AGGCCACTCCTTTTCTAAATTATGT 58.506 36.000 5.01 0.00 44.75 2.29
150 151 7.639378 AGGCCACTCCTTTTCTAAATTATGTA 58.361 34.615 5.01 0.00 44.75 2.29
151 152 7.775561 AGGCCACTCCTTTTCTAAATTATGTAG 59.224 37.037 5.01 0.00 44.75 2.74
152 153 7.773690 GGCCACTCCTTTTCTAAATTATGTAGA 59.226 37.037 0.00 0.00 0.00 2.59
153 154 9.343539 GCCACTCCTTTTCTAAATTATGTAGAT 57.656 33.333 0.00 0.00 0.00 1.98
165 166 9.599322 CTAAATTATGTAGATCAAATTCCACGC 57.401 33.333 0.00 0.00 0.00 5.34
166 167 5.651172 TTATGTAGATCAAATTCCACGCG 57.349 39.130 3.53 3.53 0.00 6.01
167 168 2.967362 TGTAGATCAAATTCCACGCGT 58.033 42.857 5.58 5.58 0.00 6.01
168 169 2.927477 TGTAGATCAAATTCCACGCGTC 59.073 45.455 9.86 0.00 0.00 5.19
169 170 0.999406 AGATCAAATTCCACGCGTCG 59.001 50.000 9.86 1.68 0.00 5.12
170 171 0.719465 GATCAAATTCCACGCGTCGT 59.281 50.000 9.86 0.00 42.36 4.34
171 172 0.719465 ATCAAATTCCACGCGTCGTC 59.281 50.000 9.86 0.00 38.32 4.20
172 173 1.225368 CAAATTCCACGCGTCGTCG 60.225 57.895 9.86 0.00 38.32 5.12
182 183 2.987593 CGTCGTCGCTGTATGCAC 59.012 61.111 0.00 0.00 43.06 4.57
183 184 1.799916 CGTCGTCGCTGTATGCACA 60.800 57.895 0.00 0.00 43.06 4.57
184 185 1.139816 CGTCGTCGCTGTATGCACAT 61.140 55.000 0.00 0.00 43.06 3.21
185 186 1.835121 GTCGTCGCTGTATGCACATA 58.165 50.000 0.00 0.00 43.06 2.29
186 187 2.190161 GTCGTCGCTGTATGCACATAA 58.810 47.619 0.00 0.00 43.06 1.90
187 188 2.601314 GTCGTCGCTGTATGCACATAAA 59.399 45.455 0.00 0.00 43.06 1.40
188 189 3.245284 GTCGTCGCTGTATGCACATAAAT 59.755 43.478 0.00 0.00 43.06 1.40
189 190 3.868661 TCGTCGCTGTATGCACATAAATT 59.131 39.130 0.00 0.00 43.06 1.82
190 191 5.044558 TCGTCGCTGTATGCACATAAATTA 58.955 37.500 0.00 0.00 43.06 1.40
191 192 5.694458 TCGTCGCTGTATGCACATAAATTAT 59.306 36.000 0.00 0.00 43.06 1.28
192 193 6.864165 TCGTCGCTGTATGCACATAAATTATA 59.136 34.615 0.00 0.00 43.06 0.98
193 194 7.061789 TCGTCGCTGTATGCACATAAATTATAG 59.938 37.037 0.00 0.00 43.06 1.31
194 195 7.148804 CGTCGCTGTATGCACATAAATTATAGT 60.149 37.037 0.00 0.00 43.06 2.12
195 196 9.135843 GTCGCTGTATGCACATAAATTATAGTA 57.864 33.333 0.00 0.00 43.06 1.82
196 197 9.353999 TCGCTGTATGCACATAAATTATAGTAG 57.646 33.333 0.00 0.00 43.06 2.57
197 198 9.140286 CGCTGTATGCACATAAATTATAGTAGT 57.860 33.333 0.00 0.00 43.06 2.73
228 229 1.241315 GGTTGCTTGCACGGTATGGT 61.241 55.000 0.00 0.00 0.00 3.55
344 345 0.455815 CTGACCGACGTGATGGATCA 59.544 55.000 0.00 0.00 0.00 2.92
350 351 1.666023 CGACGTGATGGATCATACGGG 60.666 57.143 0.00 3.61 39.30 5.28
375 376 1.018226 ATGAGTCGCTGCAGCTTGAC 61.018 55.000 34.22 31.22 39.32 3.18
419 420 0.386100 CGGCGACTAGTCCATCATCG 60.386 60.000 17.23 5.44 35.91 3.84
429 430 6.331061 ACTAGTCCATCATCGTGAAACTAAC 58.669 40.000 0.00 0.00 31.75 2.34
430 431 5.407407 AGTCCATCATCGTGAAACTAACT 57.593 39.130 0.00 0.00 31.75 2.24
431 432 6.525578 AGTCCATCATCGTGAAACTAACTA 57.474 37.500 0.00 0.00 31.75 2.24
432 433 6.565234 AGTCCATCATCGTGAAACTAACTAG 58.435 40.000 0.00 0.00 31.75 2.57
440 441 5.755813 TCGTGAAACTAACTAGTCTGTGTC 58.244 41.667 0.00 3.75 34.99 3.67
513 515 4.757149 GTGTTCTTCAACCTAGAGCAACAT 59.243 41.667 0.00 0.00 35.15 2.71
514 516 5.239525 GTGTTCTTCAACCTAGAGCAACATT 59.760 40.000 0.00 0.00 35.15 2.71
517 519 6.959639 TCTTCAACCTAGAGCAACATTTTT 57.040 33.333 0.00 0.00 0.00 1.94
539 541 5.779241 TTTTCCTCTCTCTCTCTCTCTCT 57.221 43.478 0.00 0.00 0.00 3.10
540 542 5.359194 TTTCCTCTCTCTCTCTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
542 544 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
544 546 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
546 548 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
547 549 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
548 550 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
549 551 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
552 554 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
553 555 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
566 568 1.453379 CTCTCTCTTACGGCCGGGA 60.453 63.158 31.76 21.92 0.00 5.14
570 572 0.106569 TCTCTTACGGCCGGGATGTA 60.107 55.000 31.76 9.51 0.00 2.29
572 574 0.677288 TCTTACGGCCGGGATGTATG 59.323 55.000 31.76 14.04 0.00 2.39
612 614 2.027745 AGCTCCACTGTCCATTGTACTG 60.028 50.000 0.00 0.00 0.00 2.74
642 644 1.229975 CCACATTGCTGCAGTCACGA 61.230 55.000 16.64 0.00 0.00 4.35
699 725 4.154347 CCTCGAGCTGTCAGGGGC 62.154 72.222 6.99 0.00 0.00 5.80
707 733 1.065126 AGCTGTCAGGGGCTAATCAAC 60.065 52.381 1.14 0.00 37.00 3.18
717 743 2.343101 GGCTAATCAACACGCACTACA 58.657 47.619 0.00 0.00 0.00 2.74
801 838 6.199908 CAGATTGTCCTTAGTTGAATAGAGCG 59.800 42.308 0.00 0.00 0.00 5.03
809 846 2.826128 AGTTGAATAGAGCGTCTCCACA 59.174 45.455 3.66 0.00 0.00 4.17
871 920 4.082523 CCCACGAGCCACGACCAT 62.083 66.667 7.86 0.00 45.77 3.55
872 921 2.815211 CCACGAGCCACGACCATG 60.815 66.667 7.86 0.00 45.77 3.66
873 922 2.048222 CACGAGCCACGACCATGT 60.048 61.111 7.86 0.00 45.77 3.21
877 926 1.221840 GAGCCACGACCATGTCCAT 59.778 57.895 0.00 0.00 0.00 3.41
909 958 2.716828 CGTGGCACGCACGTAGAAG 61.717 63.158 28.30 0.00 40.71 2.85
911 960 0.942410 GTGGCACGCACGTAGAAGAA 60.942 55.000 0.00 0.00 39.55 2.52
913 962 1.623973 GGCACGCACGTAGAAGAACC 61.624 60.000 0.00 0.00 0.00 3.62
916 965 1.455786 CACGCACGTAGAAGAACCAAG 59.544 52.381 0.00 0.00 0.00 3.61
931 980 1.649815 CAAGTTAACCAACGCGCCA 59.350 52.632 5.73 0.00 39.78 5.69
960 1009 1.107945 AACCAGACCAAACCAAACCG 58.892 50.000 0.00 0.00 0.00 4.44
989 1042 1.172180 TCCGGCAAGCAAGAACCAAG 61.172 55.000 0.00 0.00 0.00 3.61
1267 1338 2.760385 CCACCTCCTCCTCGTCCC 60.760 72.222 0.00 0.00 0.00 4.46
1563 1642 5.862924 GCAGCAAGCTCCGAATTAATATA 57.137 39.130 0.00 0.00 41.15 0.86
1564 1643 6.241207 GCAGCAAGCTCCGAATTAATATAA 57.759 37.500 0.00 0.00 41.15 0.98
1601 1706 2.502510 GCGCGCTGACATTGTTGG 60.503 61.111 26.67 0.00 0.00 3.77
1608 1713 2.414559 CGCTGACATTGTTGGTTCCATC 60.415 50.000 0.00 0.00 0.00 3.51
1832 1966 0.617413 CAACTCCATGGACCTGCTCT 59.383 55.000 11.44 0.00 0.00 4.09
1891 2025 1.953138 GACGCTGATGATGGAGCCG 60.953 63.158 0.00 0.00 30.98 5.52
1985 2119 1.842381 GCTGGCCTACCTGGTGAACT 61.842 60.000 10.23 0.00 38.35 3.01
1993 2127 3.244911 CCTACCTGGTGAACTTGACCAAT 60.245 47.826 10.23 0.00 43.02 3.16
2076 2211 3.124976 GCTCTGCTCATTGACTGAACTTC 59.875 47.826 0.00 0.00 32.14 3.01
2277 2429 2.811873 GCCAAGAAGAGGAGCAAGTGAA 60.812 50.000 0.00 0.00 0.00 3.18
2278 2430 3.072944 CCAAGAAGAGGAGCAAGTGAAG 58.927 50.000 0.00 0.00 0.00 3.02
2280 2432 3.676291 AGAAGAGGAGCAAGTGAAGTC 57.324 47.619 0.00 0.00 0.00 3.01
2281 2433 3.238597 AGAAGAGGAGCAAGTGAAGTCT 58.761 45.455 0.00 0.00 0.00 3.24
2284 2436 1.001860 GAGGAGCAAGTGAAGTCTGCT 59.998 52.381 0.00 0.00 38.68 4.24
2286 2438 1.542108 GGAGCAAGTGAAGTCTGCTGT 60.542 52.381 0.00 0.00 35.83 4.40
2288 2440 1.139654 AGCAAGTGAAGTCTGCTGTCA 59.860 47.619 0.00 0.00 34.25 3.58
2289 2441 1.530293 GCAAGTGAAGTCTGCTGTCAG 59.470 52.381 0.00 0.00 41.67 3.51
2293 2445 0.764369 TGAAGTCTGCTGTCAGGGGT 60.764 55.000 1.14 0.00 40.69 4.95
2294 2446 0.321122 GAAGTCTGCTGTCAGGGGTG 60.321 60.000 1.14 0.00 40.69 4.61
2295 2447 1.056700 AAGTCTGCTGTCAGGGGTGT 61.057 55.000 1.14 0.00 40.69 4.16
2296 2448 0.178932 AGTCTGCTGTCAGGGGTGTA 60.179 55.000 1.14 0.00 40.69 2.90
2297 2449 0.905357 GTCTGCTGTCAGGGGTGTAT 59.095 55.000 1.14 0.00 40.69 2.29
2298 2450 1.279271 GTCTGCTGTCAGGGGTGTATT 59.721 52.381 1.14 0.00 40.69 1.89
2299 2451 1.985159 TCTGCTGTCAGGGGTGTATTT 59.015 47.619 1.14 0.00 40.69 1.40
2300 2452 2.375174 TCTGCTGTCAGGGGTGTATTTT 59.625 45.455 1.14 0.00 40.69 1.82
2301 2453 3.157087 CTGCTGTCAGGGGTGTATTTTT 58.843 45.455 1.14 0.00 36.68 1.94
2302 2454 4.042311 TCTGCTGTCAGGGGTGTATTTTTA 59.958 41.667 1.14 0.00 40.69 1.52
2303 2455 4.730966 TGCTGTCAGGGGTGTATTTTTAA 58.269 39.130 1.14 0.00 0.00 1.52
2304 2456 4.521256 TGCTGTCAGGGGTGTATTTTTAAC 59.479 41.667 1.14 0.00 0.00 2.01
2305 2457 4.521256 GCTGTCAGGGGTGTATTTTTAACA 59.479 41.667 1.14 0.00 0.00 2.41
2306 2458 5.335661 GCTGTCAGGGGTGTATTTTTAACAG 60.336 44.000 1.14 0.00 34.87 3.16
2307 2459 4.521256 TGTCAGGGGTGTATTTTTAACAGC 59.479 41.667 0.00 0.00 43.04 4.40
2308 2460 4.765339 GTCAGGGGTGTATTTTTAACAGCT 59.235 41.667 5.52 0.00 43.25 4.24
2309 2461 5.007682 TCAGGGGTGTATTTTTAACAGCTC 58.992 41.667 5.52 1.60 44.37 4.09
2310 2462 4.157840 CAGGGGTGTATTTTTAACAGCTCC 59.842 45.833 1.92 3.94 44.98 4.70
2311 2463 4.044191 AGGGGTGTATTTTTAACAGCTCCT 59.956 41.667 1.92 5.86 44.98 3.69
2312 2464 4.398358 GGGGTGTATTTTTAACAGCTCCTC 59.602 45.833 5.52 0.00 43.25 3.71
2313 2465 5.254115 GGGTGTATTTTTAACAGCTCCTCT 58.746 41.667 5.52 0.00 43.25 3.69
2314 2466 9.858384 AGGGGTGTATTTTTAACAGCTCCTCTG 62.858 44.444 1.92 0.00 44.98 3.35
2319 2471 1.944177 TTAACAGCTCCTCTGCTCCT 58.056 50.000 0.00 0.00 46.76 3.69
2321 2473 1.551908 AACAGCTCCTCTGCTCCTGG 61.552 60.000 0.00 0.00 46.76 4.45
2326 2478 3.220629 TCCTCTGCTCCTGGAGATG 57.779 57.895 27.53 17.28 39.88 2.90
2331 2483 0.252479 CTGCTCCTGGAGATGTGCTT 59.748 55.000 27.53 0.00 33.10 3.91
2332 2484 0.035725 TGCTCCTGGAGATGTGCTTG 60.036 55.000 27.53 0.00 0.00 4.01
2333 2485 0.035630 GCTCCTGGAGATGTGCTTGT 60.036 55.000 27.53 0.00 0.00 3.16
2334 2486 1.735386 CTCCTGGAGATGTGCTTGTG 58.265 55.000 19.13 0.00 0.00 3.33
2336 2488 1.310933 CCTGGAGATGTGCTTGTGGC 61.311 60.000 0.00 0.00 42.22 5.01
2337 2489 1.642037 CTGGAGATGTGCTTGTGGCG 61.642 60.000 0.00 0.00 45.43 5.69
2343 2495 0.961019 ATGTGCTTGTGGCGACATTT 59.039 45.000 1.18 0.00 46.14 2.32
2344 2496 0.030504 TGTGCTTGTGGCGACATTTG 59.969 50.000 1.18 0.00 46.14 2.32
2345 2497 0.664166 GTGCTTGTGGCGACATTTGG 60.664 55.000 1.18 0.00 46.14 3.28
2347 2499 1.659233 CTTGTGGCGACATTTGGCA 59.341 52.632 1.18 0.00 46.14 4.92
2349 2501 1.472082 CTTGTGGCGACATTTGGCATA 59.528 47.619 1.18 0.00 46.14 3.14
2350 2502 0.808125 TGTGGCGACATTTGGCATAC 59.192 50.000 0.00 0.00 46.14 2.39
2351 2503 0.248054 GTGGCGACATTTGGCATACG 60.248 55.000 0.00 0.00 46.14 3.06
2352 2504 1.298339 GGCGACATTTGGCATACGC 60.298 57.895 0.00 0.00 44.18 4.42
2353 2505 1.427419 GCGACATTTGGCATACGCA 59.573 52.632 15.13 0.00 44.29 5.24
2354 2506 0.861450 GCGACATTTGGCATACGCAC 60.861 55.000 15.13 0.00 44.29 5.34
2355 2507 0.445829 CGACATTTGGCATACGCACA 59.554 50.000 0.00 0.00 41.24 4.57
2356 2508 1.063912 CGACATTTGGCATACGCACAT 59.936 47.619 0.00 0.00 41.24 3.21
2357 2509 2.477694 CGACATTTGGCATACGCACATT 60.478 45.455 0.00 0.00 41.24 2.71
2358 2510 2.853594 GACATTTGGCATACGCACATTG 59.146 45.455 0.00 0.00 41.24 2.82
2359 2511 2.230992 ACATTTGGCATACGCACATTGT 59.769 40.909 0.00 0.00 41.24 2.71
2360 2512 3.252400 CATTTGGCATACGCACATTGTT 58.748 40.909 0.00 0.00 41.24 2.83
2361 2513 2.627863 TTGGCATACGCACATTGTTC 57.372 45.000 0.00 0.00 41.24 3.18
2362 2514 1.819928 TGGCATACGCACATTGTTCT 58.180 45.000 0.00 0.00 41.24 3.01
2363 2515 1.468127 TGGCATACGCACATTGTTCTG 59.532 47.619 0.00 0.00 41.24 3.02
2388 2540 2.029838 GGAGCTCCGATGTGTTGATT 57.970 50.000 19.06 0.00 0.00 2.57
2479 2631 0.038744 AGGTGCAATCTGGGTTCCTG 59.961 55.000 0.00 0.00 0.00 3.86
2483 2635 0.813821 GCAATCTGGGTTCCTGAAGC 59.186 55.000 0.52 0.52 35.24 3.86
2499 2651 4.125703 CTGAAGCCTATGACTTGGTGATC 58.874 47.826 0.00 0.00 0.00 2.92
2572 2887 3.513912 TGTGTAGGCTGCACTACTACATT 59.486 43.478 30.97 0.00 45.94 2.71
2573 2888 4.707934 TGTGTAGGCTGCACTACTACATTA 59.292 41.667 30.97 9.50 45.94 1.90
2574 2889 5.041940 GTGTAGGCTGCACTACTACATTAC 58.958 45.833 25.75 11.27 45.94 1.89
2575 2890 4.707934 TGTAGGCTGCACTACTACATTACA 59.292 41.667 20.96 6.15 41.35 2.41
2576 2891 4.819105 AGGCTGCACTACTACATTACAA 57.181 40.909 0.50 0.00 0.00 2.41
2577 2892 5.359194 AGGCTGCACTACTACATTACAAT 57.641 39.130 0.50 0.00 0.00 2.71
2578 2893 5.745227 AGGCTGCACTACTACATTACAATT 58.255 37.500 0.50 0.00 0.00 2.32
2579 2894 6.180472 AGGCTGCACTACTACATTACAATTT 58.820 36.000 0.50 0.00 0.00 1.82
2580 2895 7.335627 AGGCTGCACTACTACATTACAATTTA 58.664 34.615 0.50 0.00 0.00 1.40
2581 2896 7.280205 AGGCTGCACTACTACATTACAATTTAC 59.720 37.037 0.50 0.00 0.00 2.01
2582 2897 7.117454 GCTGCACTACTACATTACAATTTACG 58.883 38.462 0.00 0.00 0.00 3.18
2583 2898 7.528481 TGCACTACTACATTACAATTTACGG 57.472 36.000 0.00 0.00 0.00 4.02
2584 2899 7.321908 TGCACTACTACATTACAATTTACGGA 58.678 34.615 0.00 0.00 0.00 4.69
2585 2900 7.490079 TGCACTACTACATTACAATTTACGGAG 59.510 37.037 0.00 0.00 0.00 4.63
2595 2910 8.879759 CATTACAATTTACGGAGTACAAGTGAT 58.120 33.333 0.00 0.00 45.76 3.06
2641 2956 5.354234 GTCACAGATATAAAACACACCCTGG 59.646 44.000 0.00 0.00 0.00 4.45
2665 2988 7.607607 TGGTGAACATGCTATGCCTATTAATAG 59.392 37.037 14.56 14.56 0.00 1.73
2667 2990 9.003658 GTGAACATGCTATGCCTATTAATAGTT 57.996 33.333 18.91 7.99 0.00 2.24
2690 3013 8.529476 AGTTAGTAGGAATACCACAAACAGTAG 58.471 37.037 0.00 0.00 38.94 2.57
2792 3120 6.529125 CAGAATATCACAGTTTTCAACCATGC 59.471 38.462 0.00 0.00 0.00 4.06
2845 3177 9.688592 CTCATTCTTTGAACAGCTAAAAGAAAT 57.311 29.630 20.47 11.90 46.96 2.17
2944 3276 1.004610 CAACCAGCAGCATACGATTCG 60.005 52.381 4.14 4.14 0.00 3.34
2945 3277 0.530650 ACCAGCAGCATACGATTCGG 60.531 55.000 11.29 0.00 0.00 4.30
2948 3280 1.524355 CAGCAGCATACGATTCGGAAG 59.476 52.381 11.29 0.00 0.00 3.46
2991 3323 3.630289 ACCTAGTCGGTGGCATCC 58.370 61.111 0.00 0.00 46.80 3.51
3074 3406 4.537688 AGATTGTCCTTGAGAAATGGAGGA 59.462 41.667 0.00 0.00 32.91 3.71
3076 3408 3.703001 GTCCTTGAGAAATGGAGGACA 57.297 47.619 14.66 0.00 43.64 4.02
3077 3409 3.604582 GTCCTTGAGAAATGGAGGACAG 58.395 50.000 14.66 0.00 43.64 3.51
3142 3474 1.366319 AATGGAGGACAGCTTCTGGT 58.634 50.000 0.00 0.00 35.51 4.00
3143 3475 1.366319 ATGGAGGACAGCTTCTGGTT 58.634 50.000 0.00 0.00 35.51 3.67
3144 3476 0.687354 TGGAGGACAGCTTCTGGTTC 59.313 55.000 0.00 0.00 35.51 3.62
3145 3477 0.687354 GGAGGACAGCTTCTGGTTCA 59.313 55.000 0.00 0.00 35.51 3.18
3146 3478 1.072331 GGAGGACAGCTTCTGGTTCAA 59.928 52.381 0.00 0.00 35.51 2.69
3147 3479 2.290577 GGAGGACAGCTTCTGGTTCAAT 60.291 50.000 0.00 0.00 35.51 2.57
3148 3480 2.746362 GAGGACAGCTTCTGGTTCAATG 59.254 50.000 0.00 0.00 35.51 2.82
3149 3481 1.815003 GGACAGCTTCTGGTTCAATGG 59.185 52.381 0.00 0.00 35.51 3.16
3150 3482 2.553028 GGACAGCTTCTGGTTCAATGGA 60.553 50.000 0.00 0.00 35.51 3.41
3151 3483 2.746362 GACAGCTTCTGGTTCAATGGAG 59.254 50.000 0.00 0.00 35.51 3.86
3152 3484 2.107204 ACAGCTTCTGGTTCAATGGAGT 59.893 45.455 0.00 0.00 35.51 3.85
3153 3485 2.746362 CAGCTTCTGGTTCAATGGAGTC 59.254 50.000 0.00 0.00 0.00 3.36
3154 3486 1.734465 GCTTCTGGTTCAATGGAGTCG 59.266 52.381 0.00 0.00 0.00 4.18
3155 3487 1.734465 CTTCTGGTTCAATGGAGTCGC 59.266 52.381 0.00 0.00 0.00 5.19
3156 3488 0.036388 TCTGGTTCAATGGAGTCGCC 60.036 55.000 0.00 0.00 37.10 5.54
3157 3489 0.036010 CTGGTTCAATGGAGTCGCCT 60.036 55.000 0.00 0.00 37.63 5.52
3158 3490 0.036388 TGGTTCAATGGAGTCGCCTC 60.036 55.000 0.00 0.00 37.63 4.70
3167 3499 2.822215 GAGTCGCCTCCCCATTAGA 58.178 57.895 0.00 0.00 0.00 2.10
3168 3500 1.343069 GAGTCGCCTCCCCATTAGAT 58.657 55.000 0.00 0.00 0.00 1.98
3169 3501 1.694696 GAGTCGCCTCCCCATTAGATT 59.305 52.381 0.00 0.00 0.00 2.40
3170 3502 1.417890 AGTCGCCTCCCCATTAGATTG 59.582 52.381 0.00 0.00 0.00 2.67
3171 3503 1.141053 GTCGCCTCCCCATTAGATTGT 59.859 52.381 0.00 0.00 0.00 2.71
3172 3504 1.416401 TCGCCTCCCCATTAGATTGTC 59.584 52.381 0.00 0.00 0.00 3.18
3173 3505 1.543429 CGCCTCCCCATTAGATTGTCC 60.543 57.143 0.00 0.00 0.00 4.02
3174 3506 1.777272 GCCTCCCCATTAGATTGTCCT 59.223 52.381 0.00 0.00 0.00 3.85
3175 3507 2.175715 GCCTCCCCATTAGATTGTCCTT 59.824 50.000 0.00 0.00 0.00 3.36
3176 3508 3.825328 CCTCCCCATTAGATTGTCCTTG 58.175 50.000 0.00 0.00 0.00 3.61
3177 3509 3.459598 CCTCCCCATTAGATTGTCCTTGA 59.540 47.826 0.00 0.00 0.00 3.02
3178 3510 4.445448 CCTCCCCATTAGATTGTCCTTGAG 60.445 50.000 0.00 0.00 0.00 3.02
3179 3511 4.370776 TCCCCATTAGATTGTCCTTGAGA 58.629 43.478 0.00 0.00 0.00 3.27
3180 3512 4.788075 TCCCCATTAGATTGTCCTTGAGAA 59.212 41.667 0.00 0.00 0.00 2.87
3181 3513 5.252863 TCCCCATTAGATTGTCCTTGAGAAA 59.747 40.000 0.00 0.00 0.00 2.52
3182 3514 6.068853 TCCCCATTAGATTGTCCTTGAGAAAT 60.069 38.462 0.00 0.00 0.00 2.17
3183 3515 6.040166 CCCCATTAGATTGTCCTTGAGAAATG 59.960 42.308 0.00 0.00 0.00 2.32
3184 3516 6.040166 CCCATTAGATTGTCCTTGAGAAATGG 59.960 42.308 0.00 0.00 40.20 3.16
3185 3517 6.830324 CCATTAGATTGTCCTTGAGAAATGGA 59.170 38.462 4.61 0.00 42.09 3.41
3186 3518 7.013083 CCATTAGATTGTCCTTGAGAAATGGAG 59.987 40.741 4.61 0.00 42.09 3.86
3187 3519 4.853007 AGATTGTCCTTGAGAAATGGAGG 58.147 43.478 0.00 0.00 32.91 4.30
3188 3520 3.439857 TTGTCCTTGAGAAATGGAGGG 57.560 47.619 0.00 0.00 32.91 4.30
3189 3521 1.004745 TGTCCTTGAGAAATGGAGGGC 59.995 52.381 0.00 0.00 32.91 5.19
3190 3522 0.253044 TCCTTGAGAAATGGAGGGCG 59.747 55.000 0.00 0.00 0.00 6.13
3191 3523 1.379642 CCTTGAGAAATGGAGGGCGC 61.380 60.000 0.00 0.00 0.00 6.53
3192 3524 1.378514 TTGAGAAATGGAGGGCGCC 60.379 57.895 21.18 21.18 0.00 6.53
3193 3525 1.852157 TTGAGAAATGGAGGGCGCCT 61.852 55.000 28.56 12.77 36.03 5.52
3194 3526 1.077429 GAGAAATGGAGGGCGCCTT 60.077 57.895 28.56 21.53 31.76 4.35
3195 3527 1.077429 AGAAATGGAGGGCGCCTTC 60.077 57.895 29.24 29.24 31.76 3.46
3196 3528 1.077429 GAAATGGAGGGCGCCTTCT 60.077 57.895 34.09 21.23 31.76 2.85
3197 3529 1.379044 AAATGGAGGGCGCCTTCTG 60.379 57.895 34.09 0.00 31.76 3.02
3198 3530 2.843912 AAATGGAGGGCGCCTTCTGG 62.844 60.000 34.09 0.00 31.76 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.125316 AGTTTGTCACATGCATGCAAAC 58.875 40.909 32.34 32.34 41.60 2.93
1 2 3.455990 AGTTTGTCACATGCATGCAAA 57.544 38.095 26.68 22.84 0.00 3.68
2 3 3.382855 GAAGTTTGTCACATGCATGCAA 58.617 40.909 26.68 18.65 0.00 4.08
3 4 2.288334 GGAAGTTTGTCACATGCATGCA 60.288 45.455 26.53 25.04 0.00 3.96
4 5 2.331194 GGAAGTTTGTCACATGCATGC 58.669 47.619 26.53 11.82 0.00 4.06
5 6 2.669113 CGGGAAGTTTGTCACATGCATG 60.669 50.000 25.09 25.09 0.00 4.06
6 7 1.541147 CGGGAAGTTTGTCACATGCAT 59.459 47.619 0.00 0.00 0.00 3.96
7 8 0.950836 CGGGAAGTTTGTCACATGCA 59.049 50.000 0.00 0.00 0.00 3.96
8 9 0.951558 ACGGGAAGTTTGTCACATGC 59.048 50.000 0.00 0.00 0.00 4.06
9 10 2.742053 CCTACGGGAAGTTTGTCACATG 59.258 50.000 0.00 0.00 33.58 3.21
10 11 2.370849 ACCTACGGGAAGTTTGTCACAT 59.629 45.455 0.00 0.00 36.25 3.21
11 12 1.764134 ACCTACGGGAAGTTTGTCACA 59.236 47.619 0.00 0.00 36.25 3.58
12 13 2.140717 CACCTACGGGAAGTTTGTCAC 58.859 52.381 0.00 0.00 36.25 3.67
13 14 1.541670 GCACCTACGGGAAGTTTGTCA 60.542 52.381 0.00 0.00 36.25 3.58
14 15 1.154197 GCACCTACGGGAAGTTTGTC 58.846 55.000 0.00 0.00 36.25 3.18
15 16 0.601841 CGCACCTACGGGAAGTTTGT 60.602 55.000 0.00 0.00 36.25 2.83
16 17 2.159181 CGCACCTACGGGAAGTTTG 58.841 57.895 0.00 0.00 36.25 2.93
17 18 4.687464 CGCACCTACGGGAAGTTT 57.313 55.556 0.00 0.00 36.25 2.66
37 38 2.321668 TATCAAACGCGCATGCAGCC 62.322 55.000 19.57 4.16 42.97 4.85
38 39 0.523125 TTATCAAACGCGCATGCAGC 60.523 50.000 19.57 19.80 42.97 5.25
39 40 1.578915 GTTTATCAAACGCGCATGCAG 59.421 47.619 19.57 13.48 42.97 4.41
40 41 1.068954 TGTTTATCAAACGCGCATGCA 60.069 42.857 19.57 0.00 44.28 3.96
41 42 1.612156 TGTTTATCAAACGCGCATGC 58.388 45.000 5.73 7.91 44.28 4.06
42 43 3.539975 GCATTGTTTATCAAACGCGCATG 60.540 43.478 5.73 5.55 44.28 4.06
43 44 2.598192 GCATTGTTTATCAAACGCGCAT 59.402 40.909 5.73 0.00 44.28 4.73
44 45 1.982223 GCATTGTTTATCAAACGCGCA 59.018 42.857 5.73 0.00 44.28 6.09
45 46 1.008542 CGCATTGTTTATCAAACGCGC 60.009 47.619 5.73 0.00 46.48 6.86
46 47 2.930898 CGCATTGTTTATCAAACGCG 57.069 45.000 3.53 3.53 46.76 6.01
47 48 3.230355 TCACGCATTGTTTATCAAACGC 58.770 40.909 0.00 0.00 44.28 4.84
48 49 5.990745 AATCACGCATTGTTTATCAAACG 57.009 34.783 0.00 0.00 44.28 3.60
49 50 8.365210 CAACTAATCACGCATTGTTTATCAAAC 58.635 33.333 0.00 0.00 39.62 2.93
50 51 8.079203 ACAACTAATCACGCATTGTTTATCAAA 58.921 29.630 0.00 0.00 39.62 2.69
51 52 7.536964 CACAACTAATCACGCATTGTTTATCAA 59.463 33.333 0.00 0.00 40.53 2.57
52 53 7.020602 CACAACTAATCACGCATTGTTTATCA 58.979 34.615 0.00 0.00 31.25 2.15
53 54 7.021196 ACACAACTAATCACGCATTGTTTATC 58.979 34.615 0.00 0.00 31.25 1.75
54 55 6.908825 ACACAACTAATCACGCATTGTTTAT 58.091 32.000 0.00 0.00 31.25 1.40
55 56 6.307031 ACACAACTAATCACGCATTGTTTA 57.693 33.333 0.00 0.00 31.25 2.01
56 57 5.181690 ACACAACTAATCACGCATTGTTT 57.818 34.783 0.00 0.00 31.25 2.83
57 58 4.829064 ACACAACTAATCACGCATTGTT 57.171 36.364 0.00 0.00 31.25 2.83
58 59 4.829064 AACACAACTAATCACGCATTGT 57.171 36.364 0.00 0.00 33.86 2.71
59 60 5.121611 TCCTAACACAACTAATCACGCATTG 59.878 40.000 0.00 0.00 0.00 2.82
60 61 5.242434 TCCTAACACAACTAATCACGCATT 58.758 37.500 0.00 0.00 0.00 3.56
61 62 4.827692 TCCTAACACAACTAATCACGCAT 58.172 39.130 0.00 0.00 0.00 4.73
62 63 4.260139 TCCTAACACAACTAATCACGCA 57.740 40.909 0.00 0.00 0.00 5.24
63 64 4.026804 CGATCCTAACACAACTAATCACGC 60.027 45.833 0.00 0.00 0.00 5.34
64 65 5.100259 ACGATCCTAACACAACTAATCACG 58.900 41.667 0.00 0.00 0.00 4.35
65 66 5.519206 GGACGATCCTAACACAACTAATCAC 59.481 44.000 0.00 0.00 32.53 3.06
66 67 5.657474 GGACGATCCTAACACAACTAATCA 58.343 41.667 0.00 0.00 32.53 2.57
67 68 4.738740 CGGACGATCCTAACACAACTAATC 59.261 45.833 0.00 0.00 33.30 1.75
68 69 4.441079 CCGGACGATCCTAACACAACTAAT 60.441 45.833 0.00 0.00 33.30 1.73
69 70 3.119388 CCGGACGATCCTAACACAACTAA 60.119 47.826 0.00 0.00 33.30 2.24
70 71 2.424601 CCGGACGATCCTAACACAACTA 59.575 50.000 0.00 0.00 33.30 2.24
71 72 1.203994 CCGGACGATCCTAACACAACT 59.796 52.381 0.00 0.00 33.30 3.16
72 73 1.203052 TCCGGACGATCCTAACACAAC 59.797 52.381 0.00 0.00 33.30 3.32
73 74 1.548081 TCCGGACGATCCTAACACAA 58.452 50.000 0.00 0.00 33.30 3.33
74 75 1.771565 ATCCGGACGATCCTAACACA 58.228 50.000 6.12 0.00 33.30 3.72
75 76 5.831702 ATATATCCGGACGATCCTAACAC 57.168 43.478 6.12 0.00 33.30 3.32
76 77 5.393787 GCAATATATCCGGACGATCCTAACA 60.394 44.000 6.12 0.00 33.30 2.41
77 78 5.041940 GCAATATATCCGGACGATCCTAAC 58.958 45.833 6.12 0.00 33.30 2.34
78 79 4.954202 AGCAATATATCCGGACGATCCTAA 59.046 41.667 6.12 0.00 33.30 2.69
79 80 4.533815 AGCAATATATCCGGACGATCCTA 58.466 43.478 6.12 0.00 33.30 2.94
80 81 3.366396 AGCAATATATCCGGACGATCCT 58.634 45.455 6.12 0.00 33.30 3.24
81 82 3.802948 AGCAATATATCCGGACGATCC 57.197 47.619 6.12 0.00 31.92 3.36
82 83 7.772332 ATTTAAGCAATATATCCGGACGATC 57.228 36.000 6.12 0.00 31.92 3.69
83 84 7.822334 TGAATTTAAGCAATATATCCGGACGAT 59.178 33.333 6.12 6.04 34.73 3.73
84 85 7.156000 TGAATTTAAGCAATATATCCGGACGA 58.844 34.615 6.12 0.00 0.00 4.20
85 86 7.330946 TCTGAATTTAAGCAATATATCCGGACG 59.669 37.037 6.12 0.00 0.00 4.79
86 87 8.443937 GTCTGAATTTAAGCAATATATCCGGAC 58.556 37.037 6.12 0.00 0.00 4.79
87 88 8.375506 AGTCTGAATTTAAGCAATATATCCGGA 58.624 33.333 6.61 6.61 0.00 5.14
88 89 8.446273 CAGTCTGAATTTAAGCAATATATCCGG 58.554 37.037 0.00 0.00 0.00 5.14
89 90 8.993121 ACAGTCTGAATTTAAGCAATATATCCG 58.007 33.333 6.91 0.00 0.00 4.18
93 94 8.826710 CCGAACAGTCTGAATTTAAGCAATATA 58.173 33.333 6.91 0.00 0.00 0.86
94 95 7.552687 TCCGAACAGTCTGAATTTAAGCAATAT 59.447 33.333 6.91 0.00 0.00 1.28
95 96 6.876789 TCCGAACAGTCTGAATTTAAGCAATA 59.123 34.615 6.91 0.00 0.00 1.90
96 97 5.705441 TCCGAACAGTCTGAATTTAAGCAAT 59.295 36.000 6.91 0.00 0.00 3.56
97 98 5.060506 TCCGAACAGTCTGAATTTAAGCAA 58.939 37.500 6.91 0.00 0.00 3.91
98 99 4.637276 TCCGAACAGTCTGAATTTAAGCA 58.363 39.130 6.91 0.00 0.00 3.91
99 100 5.179555 ACTTCCGAACAGTCTGAATTTAAGC 59.820 40.000 6.91 0.00 0.00 3.09
100 101 6.787085 ACTTCCGAACAGTCTGAATTTAAG 57.213 37.500 6.91 7.07 0.00 1.85
101 102 7.386848 CCTAACTTCCGAACAGTCTGAATTTAA 59.613 37.037 6.91 0.00 28.64 1.52
102 103 6.872020 CCTAACTTCCGAACAGTCTGAATTTA 59.128 38.462 6.91 0.00 0.00 1.40
103 104 5.701290 CCTAACTTCCGAACAGTCTGAATTT 59.299 40.000 6.91 0.00 0.00 1.82
104 105 5.238583 CCTAACTTCCGAACAGTCTGAATT 58.761 41.667 6.91 0.00 0.00 2.17
105 106 4.822026 CCTAACTTCCGAACAGTCTGAAT 58.178 43.478 6.91 0.00 0.00 2.57
106 107 3.554337 GCCTAACTTCCGAACAGTCTGAA 60.554 47.826 6.91 0.00 0.00 3.02
107 108 2.029290 GCCTAACTTCCGAACAGTCTGA 60.029 50.000 6.91 0.00 0.00 3.27
108 109 2.338500 GCCTAACTTCCGAACAGTCTG 58.662 52.381 0.00 0.00 0.00 3.51
109 110 1.275573 GGCCTAACTTCCGAACAGTCT 59.724 52.381 0.00 0.00 0.00 3.24
110 111 1.001633 TGGCCTAACTTCCGAACAGTC 59.998 52.381 3.32 0.00 0.00 3.51
111 112 1.053424 TGGCCTAACTTCCGAACAGT 58.947 50.000 3.32 0.00 0.00 3.55
112 113 1.002087 AGTGGCCTAACTTCCGAACAG 59.998 52.381 3.32 0.00 0.00 3.16
113 114 1.001633 GAGTGGCCTAACTTCCGAACA 59.998 52.381 3.32 0.00 0.00 3.18
114 115 1.675116 GGAGTGGCCTAACTTCCGAAC 60.675 57.143 3.32 0.00 0.00 3.95
115 116 0.611714 GGAGTGGCCTAACTTCCGAA 59.388 55.000 3.32 0.00 0.00 4.30
116 117 2.283824 GGAGTGGCCTAACTTCCGA 58.716 57.895 3.32 0.00 0.00 4.55
117 118 4.934989 GGAGTGGCCTAACTTCCG 57.065 61.111 3.32 0.00 0.00 4.30
126 127 6.775594 ACATAATTTAGAAAAGGAGTGGCC 57.224 37.500 0.00 0.00 0.00 5.36
127 128 8.732746 TCTACATAATTTAGAAAAGGAGTGGC 57.267 34.615 0.00 0.00 0.00 5.01
139 140 9.599322 GCGTGGAATTTGATCTACATAATTTAG 57.401 33.333 0.00 0.00 30.88 1.85
140 141 8.279800 CGCGTGGAATTTGATCTACATAATTTA 58.720 33.333 0.00 0.00 30.88 1.40
141 142 7.132213 CGCGTGGAATTTGATCTACATAATTT 58.868 34.615 0.00 0.00 30.88 1.82
142 143 6.260050 ACGCGTGGAATTTGATCTACATAATT 59.740 34.615 12.93 0.00 30.88 1.40
143 144 5.758296 ACGCGTGGAATTTGATCTACATAAT 59.242 36.000 12.93 0.00 30.88 1.28
144 145 5.113383 ACGCGTGGAATTTGATCTACATAA 58.887 37.500 12.93 0.00 30.88 1.90
145 146 4.689071 ACGCGTGGAATTTGATCTACATA 58.311 39.130 12.93 0.00 30.88 2.29
146 147 3.531538 ACGCGTGGAATTTGATCTACAT 58.468 40.909 12.93 0.00 30.88 2.29
147 148 2.927477 GACGCGTGGAATTTGATCTACA 59.073 45.455 20.70 0.00 30.88 2.74
148 149 2.034842 CGACGCGTGGAATTTGATCTAC 60.035 50.000 20.70 0.00 0.00 2.59
149 150 2.190161 CGACGCGTGGAATTTGATCTA 58.810 47.619 20.70 0.00 0.00 1.98
150 151 0.999406 CGACGCGTGGAATTTGATCT 59.001 50.000 20.70 0.00 0.00 2.75
151 152 0.719465 ACGACGCGTGGAATTTGATC 59.281 50.000 28.31 2.47 39.18 2.92
152 153 0.719465 GACGACGCGTGGAATTTGAT 59.281 50.000 28.31 2.78 41.37 2.57
153 154 1.610715 CGACGACGCGTGGAATTTGA 61.611 55.000 28.31 0.00 41.37 2.69
154 155 1.225368 CGACGACGCGTGGAATTTG 60.225 57.895 28.31 5.73 41.37 2.32
155 156 3.152703 CGACGACGCGTGGAATTT 58.847 55.556 28.31 4.87 41.37 1.82
192 193 9.057089 GCAAGCAACCAAGAATTATATACTACT 57.943 33.333 0.00 0.00 0.00 2.57
193 194 8.836413 TGCAAGCAACCAAGAATTATATACTAC 58.164 33.333 0.00 0.00 0.00 2.73
194 195 8.836413 GTGCAAGCAACCAAGAATTATATACTA 58.164 33.333 0.00 0.00 0.00 1.82
195 196 7.467267 CGTGCAAGCAACCAAGAATTATATACT 60.467 37.037 0.00 0.00 0.00 2.12
196 197 6.632834 CGTGCAAGCAACCAAGAATTATATAC 59.367 38.462 0.00 0.00 0.00 1.47
197 198 6.238621 CCGTGCAAGCAACCAAGAATTATATA 60.239 38.462 0.00 0.00 0.00 0.86
198 199 5.450412 CCGTGCAAGCAACCAAGAATTATAT 60.450 40.000 0.00 0.00 0.00 0.86
199 200 4.142491 CCGTGCAAGCAACCAAGAATTATA 60.142 41.667 0.00 0.00 0.00 0.98
200 201 3.367292 CCGTGCAAGCAACCAAGAATTAT 60.367 43.478 0.00 0.00 0.00 1.28
201 202 2.030363 CCGTGCAAGCAACCAAGAATTA 60.030 45.455 0.00 0.00 0.00 1.40
202 203 1.269726 CCGTGCAAGCAACCAAGAATT 60.270 47.619 0.00 0.00 0.00 2.17
203 204 0.314935 CCGTGCAAGCAACCAAGAAT 59.685 50.000 0.00 0.00 0.00 2.40
228 229 1.002430 GATGAGGGAGTGAGTGCAACA 59.998 52.381 0.00 0.00 41.43 3.33
344 345 0.661552 CGACTCATGACGACCCGTAT 59.338 55.000 0.00 0.00 41.37 3.06
350 351 1.409227 CTGCAGCGACTCATGACGAC 61.409 60.000 9.68 1.91 33.54 4.34
375 376 3.678072 ACGATGGTCACACATTAACTTCG 59.322 43.478 0.00 0.00 0.00 3.79
419 420 4.382160 GCGACACAGACTAGTTAGTTTCAC 59.618 45.833 0.00 0.00 36.50 3.18
429 430 0.457509 CAGCAGGCGACACAGACTAG 60.458 60.000 0.00 0.00 0.00 2.57
430 431 1.586541 CAGCAGGCGACACAGACTA 59.413 57.895 0.00 0.00 0.00 2.59
431 432 2.341543 CAGCAGGCGACACAGACT 59.658 61.111 0.00 0.00 0.00 3.24
432 433 3.418068 GCAGCAGGCGACACAGAC 61.418 66.667 0.00 0.00 0.00 3.51
440 441 1.718757 GATAAAGGTGGCAGCAGGCG 61.719 60.000 20.04 0.00 46.16 5.52
517 519 5.488919 AGAGAGAGAGAGAGAGAGAGGAAAA 59.511 44.000 0.00 0.00 0.00 2.29
518 520 5.032846 AGAGAGAGAGAGAGAGAGAGGAAA 58.967 45.833 0.00 0.00 0.00 3.13
525 527 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
527 529 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
530 532 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
532 534 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
534 536 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
535 537 5.299531 CGTAAGAGAGAGAGAGAGAGAGAGA 59.700 48.000 0.00 0.00 43.02 3.10
536 538 5.508153 CCGTAAGAGAGAGAGAGAGAGAGAG 60.508 52.000 0.00 0.00 43.02 3.20
537 539 4.341235 CCGTAAGAGAGAGAGAGAGAGAGA 59.659 50.000 0.00 0.00 43.02 3.10
538 540 4.621991 CCGTAAGAGAGAGAGAGAGAGAG 58.378 52.174 0.00 0.00 43.02 3.20
539 541 3.181469 GCCGTAAGAGAGAGAGAGAGAGA 60.181 52.174 0.00 0.00 43.02 3.10
540 542 3.131396 GCCGTAAGAGAGAGAGAGAGAG 58.869 54.545 0.00 0.00 43.02 3.20
542 544 2.218603 GGCCGTAAGAGAGAGAGAGAG 58.781 57.143 0.00 0.00 43.02 3.20
544 546 0.941542 CGGCCGTAAGAGAGAGAGAG 59.058 60.000 19.50 0.00 43.02 3.20
546 548 1.448922 CCCGGCCGTAAGAGAGAGAG 61.449 65.000 26.12 3.25 43.02 3.20
547 549 1.453379 CCCGGCCGTAAGAGAGAGA 60.453 63.158 26.12 0.00 43.02 3.10
548 550 0.824182 ATCCCGGCCGTAAGAGAGAG 60.824 60.000 26.12 4.67 43.02 3.20
549 551 1.107538 CATCCCGGCCGTAAGAGAGA 61.108 60.000 26.12 9.01 43.02 3.10
552 554 0.966920 ATACATCCCGGCCGTAAGAG 59.033 55.000 26.12 12.20 43.02 2.85
553 555 0.677288 CATACATCCCGGCCGTAAGA 59.323 55.000 26.12 18.07 43.02 2.10
570 572 8.523658 GGAGCTAAAAATAAGACACCTTTTCAT 58.476 33.333 0.00 0.00 33.94 2.57
572 574 7.808381 GTGGAGCTAAAAATAAGACACCTTTTC 59.192 37.037 0.00 0.00 33.94 2.29
590 592 3.195610 CAGTACAATGGACAGTGGAGCTA 59.804 47.826 0.00 0.00 0.00 3.32
612 614 1.948721 GCAATGTGGGCCCTACTTGC 61.949 60.000 28.04 28.04 33.13 4.01
642 644 1.541588 GCTCGAGAAGGGTTTGCAAAT 59.458 47.619 18.75 0.00 0.00 2.32
699 725 3.585862 AGGTGTAGTGCGTGTTGATTAG 58.414 45.455 0.00 0.00 0.00 1.73
707 733 1.268625 TGTACTGAGGTGTAGTGCGTG 59.731 52.381 0.00 0.00 34.09 5.34
717 743 4.205587 CGTCTACCCTATTGTACTGAGGT 58.794 47.826 0.00 0.00 0.00 3.85
801 838 2.434774 GGGTTGGGGTGTGGAGAC 59.565 66.667 0.00 0.00 0.00 3.36
861 910 1.369091 GACATGGACATGGTCGTGGC 61.369 60.000 15.94 7.14 42.91 5.01
862 911 0.744414 GGACATGGACATGGTCGTGG 60.744 60.000 15.94 0.00 42.91 4.94
863 912 0.036483 TGGACATGGACATGGTCGTG 60.036 55.000 15.94 2.98 42.91 4.35
864 913 0.911769 ATGGACATGGACATGGTCGT 59.088 50.000 15.94 6.64 42.91 4.34
865 914 2.908688 TATGGACATGGACATGGTCG 57.091 50.000 15.94 0.00 42.91 4.79
866 915 5.179368 CGTTTATATGGACATGGACATGGTC 59.821 44.000 15.94 10.55 42.91 4.02
867 916 5.063204 CGTTTATATGGACATGGACATGGT 58.937 41.667 15.94 2.75 42.91 3.55
868 917 4.083324 GCGTTTATATGGACATGGACATGG 60.083 45.833 15.94 0.00 42.91 3.66
869 918 4.377328 CGCGTTTATATGGACATGGACATG 60.377 45.833 10.57 10.57 44.15 3.21
870 919 3.745975 CGCGTTTATATGGACATGGACAT 59.254 43.478 0.00 9.02 0.00 3.06
871 920 3.127589 CGCGTTTATATGGACATGGACA 58.872 45.455 0.00 0.00 0.00 4.02
872 921 3.059868 CACGCGTTTATATGGACATGGAC 60.060 47.826 10.22 0.00 0.00 4.02
873 922 3.127589 CACGCGTTTATATGGACATGGA 58.872 45.455 10.22 0.00 0.00 3.41
877 926 1.292061 GCCACGCGTTTATATGGACA 58.708 50.000 10.22 0.00 33.80 4.02
904 953 4.512571 GCGTTGGTTAACTTGGTTCTTCTA 59.487 41.667 5.42 0.00 34.60 2.10
905 954 3.314357 GCGTTGGTTAACTTGGTTCTTCT 59.686 43.478 5.42 0.00 34.60 2.85
909 958 1.922880 GCGCGTTGGTTAACTTGGTTC 60.923 52.381 8.43 0.00 34.60 3.62
911 960 1.650363 GCGCGTTGGTTAACTTGGT 59.350 52.632 8.43 0.00 34.60 3.67
913 962 0.385473 CTGGCGCGTTGGTTAACTTG 60.385 55.000 8.43 0.00 34.60 3.16
916 965 2.127003 GCTGGCGCGTTGGTTAAC 60.127 61.111 8.43 0.00 0.00 2.01
931 980 4.643387 GTCTGGTTGGTGGGCGCT 62.643 66.667 7.64 0.00 0.00 5.92
975 1028 1.000171 GGCCTTCTTGGTTCTTGCTTG 60.000 52.381 0.00 0.00 38.35 4.01
1518 1597 8.462143 TGCTCGATCTAGTTTAGTTTAGTTTG 57.538 34.615 0.00 0.00 0.00 2.93
1557 1636 8.696043 AGCACATCAAGATTTGGCTTATATTA 57.304 30.769 0.00 0.00 0.00 0.98
1558 1637 7.521099 CGAGCACATCAAGATTTGGCTTATATT 60.521 37.037 0.00 0.00 0.00 1.28
1563 1642 2.163010 CGAGCACATCAAGATTTGGCTT 59.837 45.455 0.00 0.00 0.00 4.35
1564 1643 1.741706 CGAGCACATCAAGATTTGGCT 59.258 47.619 0.00 0.00 0.00 4.75
1601 1706 2.514824 GCTCGCCCTGGATGGAAC 60.515 66.667 0.00 0.00 38.35 3.62
1770 1903 3.669939 AATCCGATCCCCATTTTCAGT 57.330 42.857 0.00 0.00 0.00 3.41
1783 1916 0.747644 TGCACGCCATCAAATCCGAT 60.748 50.000 0.00 0.00 0.00 4.18
1832 1966 4.769063 CACCGGCGCCATGTACCA 62.769 66.667 28.98 0.00 0.00 3.25
1993 2127 0.257328 TGTGCTTGGTGACCAGGAAA 59.743 50.000 18.71 1.44 31.89 3.13
2076 2211 1.270305 ACCGGTGTGTGTTCATCTGAG 60.270 52.381 6.12 0.00 0.00 3.35
2165 2317 5.459536 TCTTGAATATCAGGATGGAGACG 57.540 43.478 0.00 0.00 36.16 4.18
2277 2429 0.178932 TACACCCCTGACAGCAGACT 60.179 55.000 0.00 0.00 45.17 3.24
2278 2430 0.905357 ATACACCCCTGACAGCAGAC 59.095 55.000 0.00 0.00 45.17 3.51
2280 2432 2.496899 AAATACACCCCTGACAGCAG 57.503 50.000 0.00 0.00 41.93 4.24
2281 2433 2.969821 AAAATACACCCCTGACAGCA 57.030 45.000 0.00 0.00 0.00 4.41
2284 2436 4.521256 GCTGTTAAAAATACACCCCTGACA 59.479 41.667 0.00 0.00 0.00 3.58
2286 2438 4.993028 AGCTGTTAAAAATACACCCCTGA 58.007 39.130 0.00 0.00 0.00 3.86
2288 2440 4.044191 AGGAGCTGTTAAAAATACACCCCT 59.956 41.667 0.00 0.00 0.00 4.79
2289 2441 4.341487 AGGAGCTGTTAAAAATACACCCC 58.659 43.478 0.00 0.00 0.00 4.95
2293 2445 5.560724 AGCAGAGGAGCTGTTAAAAATACA 58.439 37.500 0.00 0.00 46.62 2.29
2294 2446 5.065346 GGAGCAGAGGAGCTGTTAAAAATAC 59.935 44.000 0.00 0.00 46.75 1.89
2295 2447 5.045578 AGGAGCAGAGGAGCTGTTAAAAATA 60.046 40.000 0.00 0.00 46.75 1.40
2296 2448 4.013050 GGAGCAGAGGAGCTGTTAAAAAT 58.987 43.478 0.00 0.00 46.75 1.82
2297 2449 3.073062 AGGAGCAGAGGAGCTGTTAAAAA 59.927 43.478 0.00 0.00 46.75 1.94
2298 2450 2.639839 AGGAGCAGAGGAGCTGTTAAAA 59.360 45.455 0.00 0.00 46.75 1.52
2299 2451 2.027745 CAGGAGCAGAGGAGCTGTTAAA 60.028 50.000 0.00 0.00 46.75 1.52
2300 2452 1.552337 CAGGAGCAGAGGAGCTGTTAA 59.448 52.381 0.00 0.00 46.75 2.01
2301 2453 1.189752 CAGGAGCAGAGGAGCTGTTA 58.810 55.000 0.00 0.00 46.75 2.41
2302 2454 1.551908 CCAGGAGCAGAGGAGCTGTT 61.552 60.000 0.00 0.00 46.75 3.16
2303 2455 1.988956 CCAGGAGCAGAGGAGCTGT 60.989 63.158 0.00 0.00 46.75 4.40
2304 2456 1.678598 CTCCAGGAGCAGAGGAGCTG 61.679 65.000 2.60 0.00 46.75 4.24
2306 2458 0.760189 ATCTCCAGGAGCAGAGGAGC 60.760 60.000 12.26 0.00 46.71 4.70
2308 2460 0.337773 ACATCTCCAGGAGCAGAGGA 59.662 55.000 12.26 0.00 0.00 3.71
2309 2461 0.464870 CACATCTCCAGGAGCAGAGG 59.535 60.000 12.26 0.00 0.00 3.69
2310 2462 0.179078 GCACATCTCCAGGAGCAGAG 60.179 60.000 12.26 6.35 0.00 3.35
2311 2463 0.616964 AGCACATCTCCAGGAGCAGA 60.617 55.000 12.26 0.00 0.00 4.26
2312 2464 0.252479 AAGCACATCTCCAGGAGCAG 59.748 55.000 12.26 8.89 0.00 4.24
2313 2465 0.035725 CAAGCACATCTCCAGGAGCA 60.036 55.000 12.26 1.22 0.00 4.26
2314 2466 0.035630 ACAAGCACATCTCCAGGAGC 60.036 55.000 12.26 0.00 0.00 4.70
2319 2471 1.672030 CGCCACAAGCACATCTCCA 60.672 57.895 0.00 0.00 44.04 3.86
2321 2473 0.950555 TGTCGCCACAAGCACATCTC 60.951 55.000 0.00 0.00 44.04 2.75
2326 2478 0.664166 CCAAATGTCGCCACAAGCAC 60.664 55.000 0.00 0.00 44.04 4.40
2331 2483 0.808125 GTATGCCAAATGTCGCCACA 59.192 50.000 0.00 0.00 36.78 4.17
2332 2484 0.248054 CGTATGCCAAATGTCGCCAC 60.248 55.000 0.00 0.00 0.00 5.01
2333 2485 1.987704 GCGTATGCCAAATGTCGCCA 61.988 55.000 0.00 0.00 38.16 5.69
2334 2486 1.298339 GCGTATGCCAAATGTCGCC 60.298 57.895 0.00 0.00 38.16 5.54
2336 2488 0.445829 TGTGCGTATGCCAAATGTCG 59.554 50.000 4.05 0.00 41.78 4.35
2337 2489 2.849880 ATGTGCGTATGCCAAATGTC 57.150 45.000 4.05 0.00 41.78 3.06
2343 2495 1.468127 CAGAACAATGTGCGTATGCCA 59.532 47.619 4.05 2.48 41.78 4.92
2344 2496 1.468520 ACAGAACAATGTGCGTATGCC 59.531 47.619 4.05 0.00 41.78 4.40
2345 2497 2.774007 GACAGAACAATGTGCGTATGC 58.226 47.619 0.00 0.00 43.20 3.14
2347 2499 1.393539 GCGACAGAACAATGTGCGTAT 59.606 47.619 0.00 0.00 32.25 3.06
2349 2501 1.569493 GCGACAGAACAATGTGCGT 59.431 52.632 0.00 0.00 32.25 5.24
2350 2502 1.154413 GGCGACAGAACAATGTGCG 60.154 57.895 0.00 0.00 32.25 5.34
2351 2503 1.154413 CGGCGACAGAACAATGTGC 60.154 57.895 0.00 0.00 32.25 4.57
2352 2504 0.948623 TCCGGCGACAGAACAATGTG 60.949 55.000 9.30 0.00 32.25 3.21
2353 2505 0.670546 CTCCGGCGACAGAACAATGT 60.671 55.000 9.30 0.00 35.68 2.71
2354 2506 1.970917 GCTCCGGCGACAGAACAATG 61.971 60.000 9.30 0.00 0.00 2.82
2355 2507 1.741770 GCTCCGGCGACAGAACAAT 60.742 57.895 9.30 0.00 0.00 2.71
2356 2508 2.357034 GCTCCGGCGACAGAACAA 60.357 61.111 9.30 0.00 0.00 2.83
2357 2509 3.282745 GAGCTCCGGCGACAGAACA 62.283 63.158 9.30 0.00 44.37 3.18
2358 2510 2.507324 GAGCTCCGGCGACAGAAC 60.507 66.667 9.30 0.00 44.37 3.01
2359 2511 3.760035 GGAGCTCCGGCGACAGAA 61.760 66.667 19.06 0.00 44.37 3.02
2388 2540 0.832135 AGGACTCTGCCGGAACTTGA 60.832 55.000 5.05 0.00 0.00 3.02
2479 2631 4.414337 AGATCACCAAGTCATAGGCTTC 57.586 45.455 0.00 0.00 0.00 3.86
2499 2651 8.826710 TGATCTAACGGCTTGTGATAATTTAAG 58.173 33.333 0.00 0.00 0.00 1.85
2572 2887 7.604549 TCATCACTTGTACTCCGTAAATTGTA 58.395 34.615 0.00 0.00 0.00 2.41
2573 2888 6.460781 TCATCACTTGTACTCCGTAAATTGT 58.539 36.000 0.00 0.00 0.00 2.71
2574 2889 6.961359 TCATCACTTGTACTCCGTAAATTG 57.039 37.500 0.00 0.00 0.00 2.32
2575 2890 7.822334 TCAATCATCACTTGTACTCCGTAAATT 59.178 33.333 0.00 0.00 0.00 1.82
2576 2891 7.327975 TCAATCATCACTTGTACTCCGTAAAT 58.672 34.615 0.00 0.00 0.00 1.40
2577 2892 6.693466 TCAATCATCACTTGTACTCCGTAAA 58.307 36.000 0.00 0.00 0.00 2.01
2578 2893 6.275494 TCAATCATCACTTGTACTCCGTAA 57.725 37.500 0.00 0.00 0.00 3.18
2579 2894 5.907866 TCAATCATCACTTGTACTCCGTA 57.092 39.130 0.00 0.00 0.00 4.02
2580 2895 4.801330 TCAATCATCACTTGTACTCCGT 57.199 40.909 0.00 0.00 0.00 4.69
2581 2896 5.351458 TGATCAATCATCACTTGTACTCCG 58.649 41.667 0.00 0.00 36.51 4.63
2582 2897 7.798596 ATTGATCAATCATCACTTGTACTCC 57.201 36.000 15.36 0.00 41.56 3.85
2583 2898 9.539825 AGTATTGATCAATCATCACTTGTACTC 57.460 33.333 23.95 0.00 41.56 2.59
2595 2910 9.481340 GTGACTAGCAATAGTATTGATCAATCA 57.519 33.333 23.95 18.07 34.44 2.57
2629 2944 2.031120 CATGTTCACCAGGGTGTGTTT 58.969 47.619 17.46 0.47 45.55 2.83
2632 2947 0.538057 AGCATGTTCACCAGGGTGTG 60.538 55.000 17.46 9.88 45.55 3.82
2641 2956 8.553459 ACTATTAATAGGCATAGCATGTTCAC 57.447 34.615 23.24 0.00 34.69 3.18
2665 2988 7.277319 GCTACTGTTTGTGGTATTCCTACTAAC 59.723 40.741 9.40 9.40 34.67 2.34
2667 2990 6.666546 AGCTACTGTTTGTGGTATTCCTACTA 59.333 38.462 0.00 0.00 34.23 1.82
2679 3002 2.839486 TCCCTCAGCTACTGTTTGTG 57.161 50.000 0.00 0.00 32.61 3.33
2690 3013 6.595716 AGCGTATAAATATGATTTCCCTCAGC 59.404 38.462 0.00 0.00 0.00 4.26
2792 3120 1.068055 ACGAGTGTAGTAAACGCAGGG 60.068 52.381 0.00 0.00 41.29 4.45
2991 3323 2.421248 GCTCTCCTCCATTTCTCTTGGG 60.421 54.545 0.00 0.00 34.85 4.12
3074 3406 1.004044 CTCCATTGACCCAGAAGCTGT 59.996 52.381 0.00 0.00 0.00 4.40
3076 3408 1.280421 GACTCCATTGACCCAGAAGCT 59.720 52.381 0.00 0.00 0.00 3.74
3077 3409 1.743996 GACTCCATTGACCCAGAAGC 58.256 55.000 0.00 0.00 0.00 3.86
3151 3483 1.141053 ACAATCTAATGGGGAGGCGAC 59.859 52.381 0.00 0.00 0.00 5.19
3152 3484 1.416401 GACAATCTAATGGGGAGGCGA 59.584 52.381 0.00 0.00 0.00 5.54
3153 3485 1.543429 GGACAATCTAATGGGGAGGCG 60.543 57.143 0.00 0.00 0.00 5.52
3154 3486 1.777272 AGGACAATCTAATGGGGAGGC 59.223 52.381 0.00 0.00 0.00 4.70
3155 3487 3.459598 TCAAGGACAATCTAATGGGGAGG 59.540 47.826 0.00 0.00 0.00 4.30
3156 3488 4.410228 TCTCAAGGACAATCTAATGGGGAG 59.590 45.833 0.00 0.00 0.00 4.30
3157 3489 4.370776 TCTCAAGGACAATCTAATGGGGA 58.629 43.478 0.00 0.00 0.00 4.81
3158 3490 4.778213 TCTCAAGGACAATCTAATGGGG 57.222 45.455 0.00 0.00 0.00 4.96
3159 3491 6.040166 CCATTTCTCAAGGACAATCTAATGGG 59.960 42.308 0.00 0.00 37.11 4.00
3160 3492 6.830324 TCCATTTCTCAAGGACAATCTAATGG 59.170 38.462 0.00 0.00 40.34 3.16
3161 3493 7.013083 CCTCCATTTCTCAAGGACAATCTAATG 59.987 40.741 0.00 0.00 0.00 1.90
3162 3494 7.059156 CCTCCATTTCTCAAGGACAATCTAAT 58.941 38.462 0.00 0.00 0.00 1.73
3163 3495 6.418101 CCTCCATTTCTCAAGGACAATCTAA 58.582 40.000 0.00 0.00 0.00 2.10
3164 3496 5.104360 CCCTCCATTTCTCAAGGACAATCTA 60.104 44.000 0.00 0.00 0.00 1.98
3165 3497 4.324874 CCCTCCATTTCTCAAGGACAATCT 60.325 45.833 0.00 0.00 0.00 2.40
3166 3498 3.950395 CCCTCCATTTCTCAAGGACAATC 59.050 47.826 0.00 0.00 0.00 2.67
3167 3499 3.879321 GCCCTCCATTTCTCAAGGACAAT 60.879 47.826 0.00 0.00 0.00 2.71
3168 3500 2.555227 GCCCTCCATTTCTCAAGGACAA 60.555 50.000 0.00 0.00 0.00 3.18
3169 3501 1.004745 GCCCTCCATTTCTCAAGGACA 59.995 52.381 0.00 0.00 0.00 4.02
3170 3502 1.756430 GCCCTCCATTTCTCAAGGAC 58.244 55.000 0.00 0.00 0.00 3.85
3171 3503 0.253044 CGCCCTCCATTTCTCAAGGA 59.747 55.000 0.00 0.00 0.00 3.36
3172 3504 1.379642 GCGCCCTCCATTTCTCAAGG 61.380 60.000 0.00 0.00 0.00 3.61
3173 3505 1.379642 GGCGCCCTCCATTTCTCAAG 61.380 60.000 18.11 0.00 0.00 3.02
3174 3506 1.378514 GGCGCCCTCCATTTCTCAA 60.379 57.895 18.11 0.00 0.00 3.02
3175 3507 1.852157 AAGGCGCCCTCCATTTCTCA 61.852 55.000 26.15 0.00 30.89 3.27
3176 3508 1.077429 AAGGCGCCCTCCATTTCTC 60.077 57.895 26.15 0.00 30.89 2.87
3177 3509 1.077429 GAAGGCGCCCTCCATTTCT 60.077 57.895 26.15 0.00 30.89 2.52
3178 3510 1.077429 AGAAGGCGCCCTCCATTTC 60.077 57.895 26.15 19.11 30.89 2.17
3179 3511 1.379044 CAGAAGGCGCCCTCCATTT 60.379 57.895 26.15 9.93 30.89 2.32
3180 3512 2.273449 CAGAAGGCGCCCTCCATT 59.727 61.111 26.15 10.84 30.89 3.16
3181 3513 3.801997 CCAGAAGGCGCCCTCCAT 61.802 66.667 26.15 0.88 30.89 3.41
3184 3516 4.475135 GACCCAGAAGGCGCCCTC 62.475 72.222 26.15 21.67 40.58 4.30
3186 3518 3.645268 ATTGACCCAGAAGGCGCCC 62.645 63.158 26.15 9.10 40.58 6.13
3187 3519 2.044946 ATTGACCCAGAAGGCGCC 60.045 61.111 21.89 21.89 40.58 6.53
3188 3520 2.409870 CCATTGACCCAGAAGGCGC 61.410 63.158 0.00 0.00 40.58 6.53
3189 3521 0.745845 CTCCATTGACCCAGAAGGCG 60.746 60.000 0.00 0.00 40.58 5.52
3190 3522 0.329596 ACTCCATTGACCCAGAAGGC 59.670 55.000 0.00 0.00 40.58 4.35
3191 3523 1.406069 CGACTCCATTGACCCAGAAGG 60.406 57.143 0.00 0.00 43.78 3.46
3192 3524 2.009042 GCGACTCCATTGACCCAGAAG 61.009 57.143 0.00 0.00 0.00 2.85
3193 3525 0.036388 GCGACTCCATTGACCCAGAA 60.036 55.000 0.00 0.00 0.00 3.02
3194 3526 1.596934 GCGACTCCATTGACCCAGA 59.403 57.895 0.00 0.00 0.00 3.86
3195 3527 1.450312 GGCGACTCCATTGACCCAG 60.450 63.158 0.00 0.00 34.01 4.45
3196 3528 1.918293 AGGCGACTCCATTGACCCA 60.918 57.895 0.00 0.00 32.90 4.51
3197 3529 2.990479 AGGCGACTCCATTGACCC 59.010 61.111 0.00 0.00 32.90 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.