Multiple sequence alignment - TraesCS1A01G058200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G058200 chr1A 100.000 5068 0 0 1 5068 38710994 38716061 0.000000e+00 9359.0
1 TraesCS1A01G058200 chr1A 90.189 1162 105 7 3028 4186 38702684 38703839 0.000000e+00 1506.0
2 TraesCS1A01G058200 chr1A 88.306 915 62 24 1895 2805 38701416 38702289 0.000000e+00 1055.0
3 TraesCS1A01G058200 chr1A 87.047 911 79 18 996 1879 38699167 38700065 0.000000e+00 992.0
4 TraesCS1A01G058200 chr1A 81.647 1008 177 8 3040 4043 9091796 9092799 0.000000e+00 830.0
5 TraesCS1A01G058200 chr1A 82.105 950 159 10 3131 4076 9233785 9232843 0.000000e+00 802.0
6 TraesCS1A01G058200 chr1A 83.538 814 107 9 1105 1900 9089828 9090632 0.000000e+00 736.0
7 TraesCS1A01G058200 chr1A 81.051 818 123 15 1105 1900 9236450 9235643 1.550000e-174 623.0
8 TraesCS1A01G058200 chr1A 80.000 820 130 18 1105 1901 8665104 8665912 4.400000e-160 575.0
9 TraesCS1A01G058200 chr1B 97.775 1483 31 1 3049 4531 58557272 58558752 0.000000e+00 2555.0
10 TraesCS1A01G058200 chr1B 86.837 1018 123 6 3106 4118 58872535 58873546 0.000000e+00 1127.0
11 TraesCS1A01G058200 chr1B 89.711 865 71 13 3 865 58551813 58552661 0.000000e+00 1088.0
12 TraesCS1A01G058200 chr1B 81.099 1074 191 11 3036 4104 9580714 9581780 0.000000e+00 848.0
13 TraesCS1A01G058200 chr1B 81.845 1008 173 9 3040 4043 9894943 9893942 0.000000e+00 839.0
14 TraesCS1A01G058200 chr1B 79.587 921 159 19 999 1900 58552820 58553730 2.570000e-177 632.0
15 TraesCS1A01G058200 chr1B 81.174 818 119 15 1105 1900 9942177 9941373 4.310000e-175 625.0
16 TraesCS1A01G058200 chr1B 80.515 816 128 12 1105 1900 9579036 9579840 9.390000e-167 597.0
17 TraesCS1A01G058200 chr1B 79.390 820 135 15 1105 1901 9489995 9490803 9.590000e-152 547.0
18 TraesCS1A01G058200 chr1B 79.534 772 134 12 1144 1900 58930970 58931732 3.470000e-146 529.0
19 TraesCS1A01G058200 chr1B 78.345 822 141 20 1105 1900 9899284 9898474 9.800000e-137 497.0
20 TraesCS1A01G058200 chr1B 83.562 219 31 4 2465 2679 58553770 58553987 3.090000e-47 200.0
21 TraesCS1A01G058200 chr1D 86.607 2128 178 40 934 3028 38726469 38728522 0.000000e+00 2252.0
22 TraesCS1A01G058200 chr1D 86.844 1467 165 24 3028 4478 38728599 38730053 0.000000e+00 1615.0
23 TraesCS1A01G058200 chr1D 88.027 877 77 9 3 865 38733419 38734281 0.000000e+00 1013.0
24 TraesCS1A01G058200 chr1D 82.721 1007 158 13 3043 4042 7443990 7444987 0.000000e+00 881.0
25 TraesCS1A01G058200 chr1D 80.189 848 127 21 1081 1900 7429893 7430727 9.390000e-167 597.0
26 TraesCS1A01G058200 chr1D 80.024 821 128 18 1105 1901 7073672 7074480 4.400000e-160 575.0
27 TraesCS1A01G058200 chr1D 79.804 817 132 18 1105 1900 7587864 7587060 9.530000e-157 564.0
28 TraesCS1A01G058200 chr1D 78.995 776 134 15 1144 1900 39789780 39790545 2.110000e-138 503.0
29 TraesCS1A01G058200 chr1D 81.203 266 46 4 1905 2169 463548808 463548546 1.430000e-50 211.0
30 TraesCS1A01G058200 chr5B 86.269 670 64 17 2363 3023 486696769 486696119 0.000000e+00 702.0
31 TraesCS1A01G058200 chr5B 77.835 776 143 13 3281 4052 701526949 701527699 2.150000e-123 453.0
32 TraesCS1A01G058200 chr5A 81.343 268 44 5 1905 2169 423872708 423872972 3.970000e-51 213.0
33 TraesCS1A01G058200 chr5A 77.061 279 45 13 1905 2169 567214064 567213791 5.290000e-30 143.0
34 TraesCS1A01G058200 chr5D 81.132 265 45 4 1908 2169 58118375 58118637 1.850000e-49 207.0
35 TraesCS1A01G058200 chr3A 79.783 277 43 7 1905 2169 743552559 743552834 6.700000e-44 189.0
36 TraesCS1A01G058200 chr3A 81.771 192 27 8 1978 2169 108376153 108375970 2.440000e-33 154.0
37 TraesCS1A01G058200 chr6B 79.705 271 39 10 1912 2169 77812540 77812273 1.120000e-41 182.0
38 TraesCS1A01G058200 chr2A 70.097 826 180 46 1106 1899 47309083 47309873 1.500000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G058200 chr1A 38710994 38716061 5067 False 9359.000000 9359 100.000000 1 5068 1 chr1A.!!$F2 5067
1 TraesCS1A01G058200 chr1A 38699167 38703839 4672 False 1184.333333 1506 88.514000 996 4186 3 chr1A.!!$F4 3190
2 TraesCS1A01G058200 chr1A 9089828 9092799 2971 False 783.000000 830 82.592500 1105 4043 2 chr1A.!!$F3 2938
3 TraesCS1A01G058200 chr1A 9232843 9236450 3607 True 712.500000 802 81.578000 1105 4076 2 chr1A.!!$R1 2971
4 TraesCS1A01G058200 chr1A 8665104 8665912 808 False 575.000000 575 80.000000 1105 1901 1 chr1A.!!$F1 796
5 TraesCS1A01G058200 chr1B 58872535 58873546 1011 False 1127.000000 1127 86.837000 3106 4118 1 chr1B.!!$F2 1012
6 TraesCS1A01G058200 chr1B 58551813 58558752 6939 False 1118.750000 2555 87.658750 3 4531 4 chr1B.!!$F5 4528
7 TraesCS1A01G058200 chr1B 9579036 9581780 2744 False 722.500000 848 80.807000 1105 4104 2 chr1B.!!$F4 2999
8 TraesCS1A01G058200 chr1B 9893942 9899284 5342 True 668.000000 839 80.095000 1105 4043 2 chr1B.!!$R2 2938
9 TraesCS1A01G058200 chr1B 9941373 9942177 804 True 625.000000 625 81.174000 1105 1900 1 chr1B.!!$R1 795
10 TraesCS1A01G058200 chr1B 9489995 9490803 808 False 547.000000 547 79.390000 1105 1901 1 chr1B.!!$F1 796
11 TraesCS1A01G058200 chr1B 58930970 58931732 762 False 529.000000 529 79.534000 1144 1900 1 chr1B.!!$F3 756
12 TraesCS1A01G058200 chr1D 38726469 38734281 7812 False 1626.666667 2252 87.159333 3 4478 3 chr1D.!!$F5 4475
13 TraesCS1A01G058200 chr1D 7443990 7444987 997 False 881.000000 881 82.721000 3043 4042 1 chr1D.!!$F3 999
14 TraesCS1A01G058200 chr1D 7429893 7430727 834 False 597.000000 597 80.189000 1081 1900 1 chr1D.!!$F2 819
15 TraesCS1A01G058200 chr1D 7073672 7074480 808 False 575.000000 575 80.024000 1105 1901 1 chr1D.!!$F1 796
16 TraesCS1A01G058200 chr1D 7587060 7587864 804 True 564.000000 564 79.804000 1105 1900 1 chr1D.!!$R1 795
17 TraesCS1A01G058200 chr1D 39789780 39790545 765 False 503.000000 503 78.995000 1144 1900 1 chr1D.!!$F4 756
18 TraesCS1A01G058200 chr5B 486696119 486696769 650 True 702.000000 702 86.269000 2363 3023 1 chr5B.!!$R1 660
19 TraesCS1A01G058200 chr5B 701526949 701527699 750 False 453.000000 453 77.835000 3281 4052 1 chr5B.!!$F1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1031 0.321671 AGTGAGCTACCGTTGCACAT 59.678 50.0 8.14 0.0 34.02 3.21 F
1383 1441 0.523072 GCATCTCCAACACGCACAAT 59.477 50.0 0.00 0.0 0.00 2.71 F
2138 3567 0.109597 GGTGATTTCGGTTGCTGCTG 60.110 55.0 0.00 0.0 0.00 4.41 F
2868 7704 0.323957 GTGGGTGTAAGGGGAGTGAC 59.676 60.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 3548 0.109597 CAGCAGCAACCGAAATCACC 60.110 55.0 0.0 0.0 0.0 4.02 R
2602 7190 0.173481 TTCTTGGGTCATCGCTCTCG 59.827 55.0 0.0 0.0 0.0 4.04 R
2946 8994 0.174845 TAAGATTGTGTCCCTCGGCG 59.825 55.0 0.0 0.0 0.0 6.46 R
4619 13699 0.034960 CTGTCGGTCTCTCTCCCTCA 60.035 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 9.121517 CAATGTTCAGACATATTGTTGAAGAAC 57.878 33.333 0.00 0.00 45.58 3.01
41 43 5.811399 TTGTTGAAGAACTAGGTTGTGTG 57.189 39.130 0.00 0.00 32.79 3.82
112 114 5.361285 TGTGCAACTTAACAATGGGTAACTT 59.639 36.000 0.00 0.00 38.04 2.66
113 115 6.546403 TGTGCAACTTAACAATGGGTAACTTA 59.454 34.615 0.00 0.00 38.04 2.24
165 167 9.463902 TGAGTAACTTCTAGAGTTTATAGTGCT 57.536 33.333 11.25 5.44 46.34 4.40
206 208 4.424626 CGTGTAGTGACATCTGTGCTAAT 58.575 43.478 0.00 0.00 38.04 1.73
207 209 4.864806 CGTGTAGTGACATCTGTGCTAATT 59.135 41.667 0.00 0.00 38.04 1.40
208 210 6.033966 CGTGTAGTGACATCTGTGCTAATTA 58.966 40.000 0.00 0.00 38.04 1.40
209 211 6.530181 CGTGTAGTGACATCTGTGCTAATTAA 59.470 38.462 0.00 0.00 38.04 1.40
215 217 7.607607 AGTGACATCTGTGCTAATTAAACATGA 59.392 33.333 0.00 5.97 0.00 3.07
216 218 7.693951 GTGACATCTGTGCTAATTAAACATGAC 59.306 37.037 0.00 4.27 0.00 3.06
221 223 7.584108 TCTGTGCTAATTAAACATGACACAAG 58.416 34.615 0.00 0.00 36.46 3.16
223 225 8.384607 TGTGCTAATTAAACATGACACAAGTA 57.615 30.769 0.00 0.00 34.15 2.24
224 226 8.503196 TGTGCTAATTAAACATGACACAAGTAG 58.497 33.333 0.00 2.41 34.15 2.57
235 237 6.890268 ACATGACACAAGTAGATCTAGTGGTA 59.110 38.462 15.93 8.68 34.65 3.25
257 259 7.772757 TGGTATTTTGGAAATTGTTTTCTTGCT 59.227 29.630 0.00 0.00 40.91 3.91
264 266 7.322664 TGGAAATTGTTTTCTTGCTCATATCC 58.677 34.615 0.00 0.00 40.91 2.59
268 270 5.840243 TGTTTTCTTGCTCATATCCATGG 57.160 39.130 4.97 4.97 32.61 3.66
269 271 4.646040 TGTTTTCTTGCTCATATCCATGGG 59.354 41.667 13.02 0.00 35.55 4.00
285 287 6.395780 TCCATGGGAAAACAGTAGGAAATA 57.604 37.500 13.02 0.00 0.00 1.40
286 288 6.423182 TCCATGGGAAAACAGTAGGAAATAG 58.577 40.000 13.02 0.00 0.00 1.73
287 289 6.011981 TCCATGGGAAAACAGTAGGAAATAGT 60.012 38.462 13.02 0.00 0.00 2.12
288 290 7.183112 TCCATGGGAAAACAGTAGGAAATAGTA 59.817 37.037 13.02 0.00 0.00 1.82
323 325 8.191446 TCAGCTAGTCAGAACACAATAATAGTC 58.809 37.037 0.00 0.00 0.00 2.59
329 331 5.104527 TCAGAACACAATAATAGTCCAGGGG 60.105 44.000 0.00 0.00 0.00 4.79
330 332 4.788617 AGAACACAATAATAGTCCAGGGGT 59.211 41.667 0.00 0.00 0.00 4.95
331 333 5.968167 AGAACACAATAATAGTCCAGGGGTA 59.032 40.000 0.00 0.00 0.00 3.69
332 334 5.625568 ACACAATAATAGTCCAGGGGTAC 57.374 43.478 0.00 0.00 0.00 3.34
354 356 9.408069 GGTACCGTATTATAGACTTTTCATCAG 57.592 37.037 0.00 0.00 0.00 2.90
376 378 4.777896 AGACAACCTAGACCATAAGCTCAA 59.222 41.667 0.00 0.00 0.00 3.02
379 381 4.124851 ACCTAGACCATAAGCTCAAACG 57.875 45.455 0.00 0.00 0.00 3.60
388 390 5.147162 CCATAAGCTCAAACGACAGAAAAC 58.853 41.667 0.00 0.00 0.00 2.43
389 391 5.277779 CCATAAGCTCAAACGACAGAAAACA 60.278 40.000 0.00 0.00 0.00 2.83
390 392 4.695217 AAGCTCAAACGACAGAAAACAA 57.305 36.364 0.00 0.00 0.00 2.83
411 413 7.614124 ACAAAAAGAATGACTGCATTTGTTT 57.386 28.000 3.99 0.00 44.47 2.83
415 417 5.972107 AGAATGACTGCATTTGTTTAGCT 57.028 34.783 0.00 0.00 44.47 3.32
420 422 4.202141 TGACTGCATTTGTTTAGCTGCTTT 60.202 37.500 7.79 0.00 35.66 3.51
465 467 3.119065 AGTTAAGCTTAAGCCGTCTCCTC 60.119 47.826 23.71 3.86 43.38 3.71
479 481 3.117046 GTCTCCTCGAGCCGAAAATAAG 58.883 50.000 6.99 0.00 34.74 1.73
481 483 2.860735 CTCCTCGAGCCGAAAATAAGTG 59.139 50.000 6.99 0.00 34.74 3.16
517 519 1.479323 GCGGGACATGTAGTTGGTAGA 59.521 52.381 0.00 0.00 0.00 2.59
545 547 1.078891 AAATGCCCATGGGTGCTCA 59.921 52.632 31.58 20.87 37.65 4.26
555 557 3.429822 CCATGGGTGCTCAATGATGTTTC 60.430 47.826 2.85 0.00 0.00 2.78
563 565 4.005650 GCTCAATGATGTTTCAGTCCTGA 58.994 43.478 0.00 0.00 34.73 3.86
566 568 6.677431 GCTCAATGATGTTTCAGTCCTGATTC 60.677 42.308 0.00 0.00 39.64 2.52
567 569 5.352293 TCAATGATGTTTCAGTCCTGATTCG 59.648 40.000 0.00 0.00 39.64 3.34
623 625 7.058023 AGCACAAATCATATATTTGGCACAT 57.942 32.000 17.86 0.00 41.80 3.21
637 639 7.814264 ATTTGGCACATGTTTTTAATGGAAA 57.186 28.000 0.00 0.00 39.30 3.13
639 641 6.798315 TGGCACATGTTTTTAATGGAAATG 57.202 33.333 0.00 0.00 0.00 2.32
640 642 6.528321 TGGCACATGTTTTTAATGGAAATGA 58.472 32.000 0.00 0.00 0.00 2.57
641 643 6.994496 TGGCACATGTTTTTAATGGAAATGAA 59.006 30.769 0.00 0.00 0.00 2.57
642 644 7.041508 TGGCACATGTTTTTAATGGAAATGAAC 60.042 33.333 0.00 0.00 0.00 3.18
644 646 8.505625 GCACATGTTTTTAATGGAAATGAACAT 58.494 29.630 0.00 0.00 38.29 2.71
687 689 8.659925 TGATGCAAAGAACAATGTTTTAATGT 57.340 26.923 0.00 0.00 0.00 2.71
773 776 6.730175 TGTTACGCACACATTAAGAAATTGT 58.270 32.000 0.00 0.00 0.00 2.71
827 830 7.047460 AGAGATTGCACACTTTGAAGAAATT 57.953 32.000 0.00 0.00 0.00 1.82
860 863 8.522830 ACACAAAATTAACTAGAATGTGGGATG 58.477 33.333 0.00 0.00 40.60 3.51
865 868 1.842562 ACTAGAATGTGGGATGCTGCT 59.157 47.619 0.00 0.00 0.00 4.24
868 871 0.394762 GAATGTGGGATGCTGCTGGA 60.395 55.000 0.00 0.00 0.00 3.86
869 872 0.682209 AATGTGGGATGCTGCTGGAC 60.682 55.000 0.00 0.00 0.00 4.02
872 875 0.462759 GTGGGATGCTGCTGGACTAC 60.463 60.000 0.00 0.00 0.00 2.73
873 876 0.618680 TGGGATGCTGCTGGACTACT 60.619 55.000 0.00 0.00 0.00 2.57
874 877 1.342975 TGGGATGCTGCTGGACTACTA 60.343 52.381 0.00 0.00 0.00 1.82
875 878 1.069358 GGGATGCTGCTGGACTACTAC 59.931 57.143 0.00 0.00 0.00 2.73
876 879 1.757118 GGATGCTGCTGGACTACTACA 59.243 52.381 0.00 0.00 0.00 2.74
877 880 2.366916 GGATGCTGCTGGACTACTACAT 59.633 50.000 0.00 0.00 0.00 2.29
878 881 2.967599 TGCTGCTGGACTACTACATG 57.032 50.000 0.00 0.00 0.00 3.21
879 882 1.134699 TGCTGCTGGACTACTACATGC 60.135 52.381 0.00 0.00 0.00 4.06
896 946 7.031372 ACTACATGCATATTGCTTTGTTCTTG 58.969 34.615 0.00 0.00 45.31 3.02
897 947 6.028146 ACATGCATATTGCTTTGTTCTTGA 57.972 33.333 0.00 0.00 45.31 3.02
900 950 5.702865 TGCATATTGCTTTGTTCTTGAGTC 58.297 37.500 0.75 0.00 45.31 3.36
901 951 5.241285 TGCATATTGCTTTGTTCTTGAGTCA 59.759 36.000 0.75 0.00 45.31 3.41
902 952 6.071784 TGCATATTGCTTTGTTCTTGAGTCAT 60.072 34.615 0.00 0.00 45.31 3.06
903 953 6.810182 GCATATTGCTTTGTTCTTGAGTCATT 59.190 34.615 0.00 0.00 40.96 2.57
905 955 9.199982 CATATTGCTTTGTTCTTGAGTCATTTT 57.800 29.630 0.00 0.00 0.00 1.82
958 1008 1.137479 TCGGCGGTTCCAGTATAAAGG 59.863 52.381 7.21 0.00 34.01 3.11
965 1015 4.443621 GGTTCCAGTATAAAGGAGTGAGC 58.556 47.826 0.00 0.00 34.91 4.26
966 1016 4.162509 GGTTCCAGTATAAAGGAGTGAGCT 59.837 45.833 0.00 0.00 34.91 4.09
968 1018 6.274579 GTTCCAGTATAAAGGAGTGAGCTAC 58.725 44.000 0.00 0.00 34.91 3.58
978 1031 0.321671 AGTGAGCTACCGTTGCACAT 59.678 50.000 8.14 0.00 34.02 3.21
1008 1063 2.764010 AGGTACAGTATCAATGCCGACA 59.236 45.455 0.00 0.00 0.00 4.35
1029 1084 1.751733 GCATTCTTGCTGATGGCCCTA 60.752 52.381 0.00 0.00 45.77 3.53
1044 1099 3.465403 CTACTCCTGGCGGCAGCT 61.465 66.667 31.99 18.40 44.37 4.24
1176 1231 4.208632 CGCAAGGGCTTCGAGATT 57.791 55.556 0.00 0.00 38.10 2.40
1242 1297 4.626081 GTGGTGCACCTGTCGGCT 62.626 66.667 34.75 0.00 36.82 5.52
1299 1354 1.421410 GGATGTGCTACAACGCCTCG 61.421 60.000 0.00 0.00 0.00 4.63
1383 1441 0.523072 GCATCTCCAACACGCACAAT 59.477 50.000 0.00 0.00 0.00 2.71
1384 1442 1.730121 GCATCTCCAACACGCACAATG 60.730 52.381 0.00 0.00 0.00 2.82
1602 1663 3.055094 ACTTCGAGTTCCATGCCTACAAT 60.055 43.478 0.00 0.00 0.00 2.71
1791 1885 4.681978 GGTCAGTCCGCCTGCGTT 62.682 66.667 10.94 0.00 41.25 4.84
1863 1957 0.905357 AGTGCTCCAAAGGCTACGAT 59.095 50.000 0.00 0.00 0.00 3.73
1970 3398 8.603898 TCTCAGTAGTCCCTGAAATATTTACA 57.396 34.615 0.00 1.00 40.78 2.41
2094 3523 1.265635 TCTGAACGAAATGCAAACCGG 59.734 47.619 0.00 0.00 0.00 5.28
2098 3527 2.629639 ACGAAATGCAAACCGGAATC 57.370 45.000 9.46 0.00 0.00 2.52
2099 3528 1.883275 ACGAAATGCAAACCGGAATCA 59.117 42.857 9.46 0.00 0.00 2.57
2100 3529 2.250188 CGAAATGCAAACCGGAATCAC 58.750 47.619 9.46 0.00 0.00 3.06
2101 3530 2.606108 GAAATGCAAACCGGAATCACC 58.394 47.619 9.46 0.00 0.00 4.02
2115 3544 5.567138 GGAATCACCGAAATTCACTGAAT 57.433 39.130 0.00 0.00 35.30 2.57
2116 3545 5.954335 GGAATCACCGAAATTCACTGAATT 58.046 37.500 10.71 10.71 43.07 2.17
2135 3564 0.871722 TTCGGTGATTTCGGTTGCTG 59.128 50.000 0.00 0.00 0.00 4.41
2136 3565 1.154225 CGGTGATTTCGGTTGCTGC 60.154 57.895 0.00 0.00 0.00 5.25
2137 3566 1.577328 CGGTGATTTCGGTTGCTGCT 61.577 55.000 0.00 0.00 0.00 4.24
2138 3567 0.109597 GGTGATTTCGGTTGCTGCTG 60.110 55.000 0.00 0.00 0.00 4.41
2139 3568 0.874390 GTGATTTCGGTTGCTGCTGA 59.126 50.000 0.00 0.00 0.00 4.26
2140 3569 1.266718 GTGATTTCGGTTGCTGCTGAA 59.733 47.619 0.00 0.00 32.46 3.02
2146 3577 3.011949 TCGGTTGCTGCTGAAATTTTC 57.988 42.857 0.00 2.05 0.00 2.29
2149 3580 3.062042 GGTTGCTGCTGAAATTTTCCTG 58.938 45.455 6.68 1.57 0.00 3.86
2155 3586 4.683320 GCTGCTGAAATTTTCCTGAAACTC 59.317 41.667 6.68 0.00 0.00 3.01
2160 3591 6.758416 GCTGAAATTTTCCTGAAACTCAAAGT 59.242 34.615 6.68 0.00 0.00 2.66
2169 3600 5.478679 TCCTGAAACTCAAAGTGAAAACCAA 59.521 36.000 0.00 0.00 0.00 3.67
2177 3608 8.379457 ACTCAAAGTGAAAACCAATAGTACTC 57.621 34.615 0.00 0.00 0.00 2.59
2180 3611 8.653191 TCAAAGTGAAAACCAATAGTACTCCTA 58.347 33.333 0.00 0.00 0.00 2.94
2184 3615 9.490083 AGTGAAAACCAATAGTACTCCTACTAT 57.510 33.333 0.00 0.00 44.83 2.12
2406 3839 7.686438 TGCTAATCAGTGCTCAAAATAGAAA 57.314 32.000 0.00 0.00 0.00 2.52
2411 3844 6.748333 TCAGTGCTCAAAATAGAAATCTGG 57.252 37.500 0.00 0.00 0.00 3.86
2439 3876 6.144402 GCATGTTTTCTAAGACACCATTGTTG 59.856 38.462 0.00 0.00 35.47 3.33
2504 7092 4.569966 TGATTTTTGTGAATTTGCGCAACT 59.430 33.333 24.99 15.90 37.93 3.16
2532 7120 1.065199 AGATGAATGTGCACATCCGGT 60.065 47.619 31.45 16.92 42.38 5.28
2634 7222 1.608590 CCCAAGAACTGAACAATGCGT 59.391 47.619 0.00 0.00 0.00 5.24
2667 7255 1.610522 ACTTGCTGCACAGATTTCCAC 59.389 47.619 0.00 0.00 0.00 4.02
2771 7439 8.909708 TCACTTCAAGTAGACAAAACAAATTG 57.090 30.769 0.00 0.00 36.37 2.32
2772 7440 8.519526 TCACTTCAAGTAGACAAAACAAATTGT 58.480 29.630 0.00 0.00 45.82 2.71
2836 7651 9.705103 TTATAGTTTAGTGCCTCCTAGAGTTAA 57.295 33.333 0.00 0.00 0.00 2.01
2868 7704 0.323957 GTGGGTGTAAGGGGAGTGAC 59.676 60.000 0.00 0.00 0.00 3.67
2874 7710 3.429960 GGTGTAAGGGGAGTGACGATTAC 60.430 52.174 0.00 0.00 0.00 1.89
2946 8994 4.093743 ACTGGTGAACAAATAATTCCCCC 58.906 43.478 0.00 0.00 0.00 5.40
2947 8995 3.093057 TGGTGAACAAATAATTCCCCCG 58.907 45.455 0.00 0.00 0.00 5.73
2966 9014 1.202533 CGCCGAGGGACACAATCTTAT 60.203 52.381 0.00 0.00 0.00 1.73
2967 9015 2.035449 CGCCGAGGGACACAATCTTATA 59.965 50.000 0.00 0.00 0.00 0.98
2969 9017 3.069729 GCCGAGGGACACAATCTTATACT 59.930 47.826 0.00 0.00 0.00 2.12
3011 11961 2.791158 CGCGGGTACATTCAATTTCAGC 60.791 50.000 0.00 0.00 0.00 4.26
3030 11980 8.862325 TTTCAGCATCTTACCTTTCTTTATCA 57.138 30.769 0.00 0.00 0.00 2.15
3031 11981 8.498054 TTCAGCATCTTACCTTTCTTTATCAG 57.502 34.615 0.00 0.00 0.00 2.90
3032 11982 7.050377 TCAGCATCTTACCTTTCTTTATCAGG 58.950 38.462 0.00 0.00 0.00 3.86
3093 12152 6.070251 TCCATATATAGGTGCAATAGGTGGTG 60.070 42.308 0.00 0.00 0.00 4.17
3112 12171 3.163594 GTGCACTTGTCATCGCATTTAC 58.836 45.455 10.32 0.00 36.64 2.01
3119 12178 2.421775 TGTCATCGCATTTACGGCATTT 59.578 40.909 0.00 0.00 0.00 2.32
3247 12306 4.460731 GGAGCTCAAGCCAGTTTTAAAGAT 59.539 41.667 17.19 0.00 43.38 2.40
3646 12705 7.148018 ACCAGCAAATATACTTTTGGATGACAG 60.148 37.037 2.22 0.00 37.13 3.51
3665 12724 2.818432 CAGCTTTGTGCCAAAGATCTCT 59.182 45.455 23.58 12.64 44.23 3.10
4127 13194 7.890515 TGAACCTTTATTGTGCATCACATTTA 58.109 30.769 0.11 0.00 44.16 1.40
4138 13205 4.037803 TGCATCACATTTATTCCCATTCCG 59.962 41.667 0.00 0.00 0.00 4.30
4192 13259 3.804036 ACTTTCGATGTGTGAACCTTCA 58.196 40.909 0.00 0.00 34.20 3.02
4217 13284 6.538021 ACTTATTGTATTTGCTGCTCTGAGAG 59.462 38.462 9.28 4.80 0.00 3.20
4244 13321 5.011840 AGGGGTTTCAGAGAACTTGTAGTAC 59.988 44.000 0.00 0.00 0.00 2.73
4397 13477 2.567169 TGGCAATATCTAGGGGTGATCG 59.433 50.000 0.00 0.00 0.00 3.69
4531 13611 6.954102 AGGGTGTATCATGCTGTATACTGATA 59.046 38.462 13.44 10.35 31.20 2.15
4533 13613 7.036220 GGTGTATCATGCTGTATACTGATACC 58.964 42.308 25.31 19.75 44.96 2.73
4534 13614 6.747739 GTGTATCATGCTGTATACTGATACCG 59.252 42.308 25.31 8.55 44.96 4.02
4535 13615 4.783764 TCATGCTGTATACTGATACCGG 57.216 45.455 13.44 0.00 37.70 5.28
4537 13617 4.459337 TCATGCTGTATACTGATACCGGAG 59.541 45.833 9.46 0.00 37.70 4.63
4550 13630 2.100603 CGGAGGAAGCTCGTCGTC 59.899 66.667 0.00 0.00 32.46 4.20
4551 13631 2.100603 GGAGGAAGCTCGTCGTCG 59.899 66.667 0.00 0.00 34.03 5.12
4553 13633 1.226073 GAGGAAGCTCGTCGTCGTC 60.226 63.158 1.33 0.00 38.33 4.20
4554 13634 2.573689 GGAAGCTCGTCGTCGTCG 60.574 66.667 5.50 5.50 38.33 5.12
4555 13635 2.172900 GAAGCTCGTCGTCGTCGT 59.827 61.111 11.41 0.00 38.33 4.34
4556 13636 1.858280 GAAGCTCGTCGTCGTCGTC 60.858 63.158 11.41 5.52 38.33 4.20
4567 13647 3.933498 CGTCGTCGCCGCTAGCTA 61.933 66.667 13.93 0.00 40.39 3.32
4568 13648 2.052060 GTCGTCGCCGCTAGCTAG 60.052 66.667 16.84 16.84 40.39 3.42
4569 13649 3.950254 TCGTCGCCGCTAGCTAGC 61.950 66.667 31.88 31.88 45.62 3.42
4570 13650 4.984689 CGTCGCCGCTAGCTAGCC 62.985 72.222 34.27 22.49 46.34 3.93
4571 13651 3.900892 GTCGCCGCTAGCTAGCCA 61.901 66.667 34.27 16.69 46.34 4.75
4572 13652 3.596743 TCGCCGCTAGCTAGCCAG 61.597 66.667 34.27 27.18 46.34 4.85
4581 13661 4.598257 GCTAGCCAGCGTTGAGAA 57.402 55.556 2.29 0.00 38.22 2.87
4582 13662 2.840974 GCTAGCCAGCGTTGAGAAA 58.159 52.632 2.29 0.00 38.22 2.52
4583 13663 0.444260 GCTAGCCAGCGTTGAGAAAC 59.556 55.000 2.29 0.00 38.22 2.78
4584 13664 1.941668 GCTAGCCAGCGTTGAGAAACT 60.942 52.381 2.29 0.00 38.22 2.66
4585 13665 1.996191 CTAGCCAGCGTTGAGAAACTC 59.004 52.381 0.00 0.00 0.00 3.01
4586 13666 0.946221 AGCCAGCGTTGAGAAACTCG 60.946 55.000 0.00 0.00 32.35 4.18
4587 13667 1.901650 GCCAGCGTTGAGAAACTCGG 61.902 60.000 0.00 0.00 32.35 4.63
4589 13669 1.063806 CAGCGTTGAGAAACTCGGAG 58.936 55.000 2.83 2.83 32.35 4.63
4590 13670 0.667792 AGCGTTGAGAAACTCGGAGC 60.668 55.000 4.58 0.00 32.35 4.70
4592 13672 1.497991 CGTTGAGAAACTCGGAGCAA 58.502 50.000 4.58 0.00 32.35 3.91
4594 13674 1.192534 GTTGAGAAACTCGGAGCAACG 59.807 52.381 4.58 0.00 32.35 4.10
4596 13676 1.202486 TGAGAAACTCGGAGCAACGTT 60.202 47.619 4.58 0.00 32.35 3.99
4597 13677 1.192534 GAGAAACTCGGAGCAACGTTG 59.807 52.381 23.90 23.90 34.94 4.10
4598 13678 1.202486 AGAAACTCGGAGCAACGTTGA 60.202 47.619 31.62 9.45 34.94 3.18
4600 13680 1.658994 AACTCGGAGCAACGTTGAAA 58.341 45.000 31.62 9.94 34.94 2.69
4601 13681 1.217882 ACTCGGAGCAACGTTGAAAG 58.782 50.000 31.62 19.73 34.94 2.62
4602 13682 0.110644 CTCGGAGCAACGTTGAAAGC 60.111 55.000 31.62 16.11 34.94 3.51
4603 13683 0.812014 TCGGAGCAACGTTGAAAGCA 60.812 50.000 31.62 8.91 34.94 3.91
4604 13684 0.384725 CGGAGCAACGTTGAAAGCAG 60.385 55.000 31.62 12.95 0.00 4.24
4605 13685 0.944386 GGAGCAACGTTGAAAGCAGA 59.056 50.000 31.62 0.00 0.00 4.26
4606 13686 1.333619 GGAGCAACGTTGAAAGCAGAA 59.666 47.619 31.62 0.00 0.00 3.02
4607 13687 2.376032 GAGCAACGTTGAAAGCAGAAC 58.624 47.619 31.62 10.34 0.00 3.01
4608 13688 1.065551 AGCAACGTTGAAAGCAGAACC 59.934 47.619 31.62 9.60 0.00 3.62
4609 13689 1.202245 GCAACGTTGAAAGCAGAACCA 60.202 47.619 31.62 0.00 0.00 3.67
4610 13690 2.733858 GCAACGTTGAAAGCAGAACCAA 60.734 45.455 31.62 0.00 0.00 3.67
4612 13692 3.420839 ACGTTGAAAGCAGAACCAAAG 57.579 42.857 0.00 0.00 0.00 2.77
4613 13693 2.119457 CGTTGAAAGCAGAACCAAAGC 58.881 47.619 0.00 0.00 0.00 3.51
4614 13694 2.223572 CGTTGAAAGCAGAACCAAAGCT 60.224 45.455 0.00 0.00 41.03 3.74
4615 13695 3.118542 GTTGAAAGCAGAACCAAAGCTG 58.881 45.455 0.00 0.00 38.86 4.24
4628 13708 2.197283 AAAGCTGCTTTGAGGGAGAG 57.803 50.000 25.52 0.00 31.98 3.20
4629 13709 1.356124 AAGCTGCTTTGAGGGAGAGA 58.644 50.000 9.53 0.00 0.00 3.10
4630 13710 0.903942 AGCTGCTTTGAGGGAGAGAG 59.096 55.000 0.00 0.00 0.00 3.20
4631 13711 0.901124 GCTGCTTTGAGGGAGAGAGA 59.099 55.000 0.00 0.00 0.00 3.10
4632 13712 1.405391 GCTGCTTTGAGGGAGAGAGAC 60.405 57.143 0.00 0.00 0.00 3.36
4633 13713 1.206849 CTGCTTTGAGGGAGAGAGACC 59.793 57.143 0.00 0.00 0.00 3.85
4634 13714 0.174617 GCTTTGAGGGAGAGAGACCG 59.825 60.000 0.00 0.00 0.00 4.79
4635 13715 1.840737 CTTTGAGGGAGAGAGACCGA 58.159 55.000 0.00 0.00 0.00 4.69
4636 13716 1.474879 CTTTGAGGGAGAGAGACCGAC 59.525 57.143 0.00 0.00 0.00 4.79
4637 13717 0.404426 TTGAGGGAGAGAGACCGACA 59.596 55.000 0.00 0.00 0.00 4.35
4640 13720 0.699399 AGGGAGAGAGACCGACAGAA 59.301 55.000 0.00 0.00 0.00 3.02
4641 13721 1.075698 AGGGAGAGAGACCGACAGAAA 59.924 52.381 0.00 0.00 0.00 2.52
4642 13722 1.893801 GGGAGAGAGACCGACAGAAAA 59.106 52.381 0.00 0.00 0.00 2.29
4643 13723 2.352912 GGGAGAGAGACCGACAGAAAAC 60.353 54.545 0.00 0.00 0.00 2.43
4644 13724 2.352912 GGAGAGAGACCGACAGAAAACC 60.353 54.545 0.00 0.00 0.00 3.27
4645 13725 2.296471 GAGAGAGACCGACAGAAAACCA 59.704 50.000 0.00 0.00 0.00 3.67
4646 13726 2.297597 AGAGAGACCGACAGAAAACCAG 59.702 50.000 0.00 0.00 0.00 4.00
4647 13727 1.344763 AGAGACCGACAGAAAACCAGG 59.655 52.381 0.00 0.00 0.00 4.45
4648 13728 0.250338 AGACCGACAGAAAACCAGGC 60.250 55.000 0.00 0.00 0.00 4.85
4651 13731 0.875059 CCGACAGAAAACCAGGCTTC 59.125 55.000 0.00 0.00 0.00 3.86
4652 13732 0.875059 CGACAGAAAACCAGGCTTCC 59.125 55.000 0.00 0.00 0.00 3.46
4654 13734 2.155279 GACAGAAAACCAGGCTTCCTC 58.845 52.381 0.00 0.00 0.00 3.71
4666 13746 0.881118 GCTTCCTCGCCATCAAAACA 59.119 50.000 0.00 0.00 0.00 2.83
4667 13747 1.269448 GCTTCCTCGCCATCAAAACAA 59.731 47.619 0.00 0.00 0.00 2.83
4668 13748 2.922335 GCTTCCTCGCCATCAAAACAAC 60.922 50.000 0.00 0.00 0.00 3.32
4669 13749 1.974265 TCCTCGCCATCAAAACAACA 58.026 45.000 0.00 0.00 0.00 3.33
4670 13750 2.302260 TCCTCGCCATCAAAACAACAA 58.698 42.857 0.00 0.00 0.00 2.83
4671 13751 2.293122 TCCTCGCCATCAAAACAACAAG 59.707 45.455 0.00 0.00 0.00 3.16
4672 13752 2.034558 CCTCGCCATCAAAACAACAAGT 59.965 45.455 0.00 0.00 0.00 3.16
4673 13753 3.490761 CCTCGCCATCAAAACAACAAGTT 60.491 43.478 0.00 0.00 43.89 2.66
4674 13754 3.443037 TCGCCATCAAAACAACAAGTTG 58.557 40.909 11.16 11.16 45.58 3.16
4675 13755 3.129462 TCGCCATCAAAACAACAAGTTGA 59.871 39.130 18.90 0.00 42.93 3.18
4676 13756 3.862267 CGCCATCAAAACAACAAGTTGAA 59.138 39.130 18.90 0.76 42.93 2.69
4677 13757 4.259770 CGCCATCAAAACAACAAGTTGAAC 60.260 41.667 18.90 0.00 42.93 3.18
4680 13760 6.348050 GCCATCAAAACAACAAGTTGAACAAA 60.348 34.615 18.90 2.95 42.93 2.83
4681 13761 7.626028 GCCATCAAAACAACAAGTTGAACAAAT 60.626 33.333 18.90 4.93 42.93 2.32
4682 13762 7.904461 CCATCAAAACAACAAGTTGAACAAATC 59.096 33.333 18.90 0.00 42.93 2.17
4685 13765 8.997323 TCAAAACAACAAGTTGAACAAATCATT 58.003 25.926 18.90 0.00 42.93 2.57
4686 13766 9.609950 CAAAACAACAAGTTGAACAAATCATTT 57.390 25.926 18.90 3.79 42.93 2.32
4688 13768 9.609950 AAACAACAAGTTGAACAAATCATTTTG 57.390 25.926 18.90 1.60 43.67 2.44
4690 13770 9.429359 ACAACAAGTTGAACAAATCATTTTGTA 57.571 25.926 18.90 0.00 46.05 2.41
4703 13783 8.525876 CAAATCATTTTGTATGTATGCAGTTCG 58.474 33.333 0.00 0.00 37.92 3.95
4704 13784 6.976636 TCATTTTGTATGTATGCAGTTCGA 57.023 33.333 0.00 0.00 0.00 3.71
4706 13786 6.593770 TCATTTTGTATGTATGCAGTTCGAGT 59.406 34.615 0.00 0.00 0.00 4.18
4707 13787 6.403333 TTTTGTATGTATGCAGTTCGAGTC 57.597 37.500 0.00 0.00 0.00 3.36
4709 13789 5.324784 TGTATGTATGCAGTTCGAGTCTT 57.675 39.130 0.00 0.00 0.00 3.01
4711 13791 6.163476 TGTATGTATGCAGTTCGAGTCTTTT 58.837 36.000 0.00 0.00 0.00 2.27
4713 13793 2.977405 ATGCAGTTCGAGTCTTTTGC 57.023 45.000 0.00 0.00 0.00 3.68
4715 13795 1.867233 TGCAGTTCGAGTCTTTTGCTC 59.133 47.619 7.12 0.00 33.00 4.26
4716 13796 2.139118 GCAGTTCGAGTCTTTTGCTCT 58.861 47.619 0.00 0.00 0.00 4.09
4718 13798 3.366422 GCAGTTCGAGTCTTTTGCTCTAG 59.634 47.826 0.00 0.00 0.00 2.43
4719 13799 3.923461 CAGTTCGAGTCTTTTGCTCTAGG 59.077 47.826 0.00 0.00 0.00 3.02
4720 13800 3.574826 AGTTCGAGTCTTTTGCTCTAGGT 59.425 43.478 0.00 0.00 0.00 3.08
4721 13801 4.039366 AGTTCGAGTCTTTTGCTCTAGGTT 59.961 41.667 0.00 0.00 0.00 3.50
4722 13802 4.175787 TCGAGTCTTTTGCTCTAGGTTC 57.824 45.455 0.00 0.00 0.00 3.62
4723 13803 3.572682 TCGAGTCTTTTGCTCTAGGTTCA 59.427 43.478 0.00 0.00 0.00 3.18
4724 13804 4.038763 TCGAGTCTTTTGCTCTAGGTTCAA 59.961 41.667 0.00 0.00 0.00 2.69
4725 13805 4.387256 CGAGTCTTTTGCTCTAGGTTCAAG 59.613 45.833 0.00 0.00 0.00 3.02
4726 13806 5.297569 AGTCTTTTGCTCTAGGTTCAAGT 57.702 39.130 0.00 0.00 0.00 3.16
4727 13807 5.685728 AGTCTTTTGCTCTAGGTTCAAGTT 58.314 37.500 0.00 0.00 0.00 2.66
4729 13809 7.280356 AGTCTTTTGCTCTAGGTTCAAGTTTA 58.720 34.615 0.00 0.00 0.00 2.01
4733 13813 8.458573 TTTTGCTCTAGGTTCAAGTTTATGAA 57.541 30.769 0.00 0.00 36.99 2.57
4734 13814 8.635765 TTTGCTCTAGGTTCAAGTTTATGAAT 57.364 30.769 0.00 0.00 41.09 2.57
4735 13815 9.733556 TTTGCTCTAGGTTCAAGTTTATGAATA 57.266 29.630 0.00 0.00 41.09 1.75
4736 13816 8.718102 TGCTCTAGGTTCAAGTTTATGAATAC 57.282 34.615 0.00 0.00 41.09 1.89
4737 13817 8.540388 TGCTCTAGGTTCAAGTTTATGAATACT 58.460 33.333 0.00 0.00 41.09 2.12
4738 13818 8.821894 GCTCTAGGTTCAAGTTTATGAATACTG 58.178 37.037 0.00 0.00 41.09 2.74
4739 13819 8.718102 TCTAGGTTCAAGTTTATGAATACTGC 57.282 34.615 0.00 0.00 41.09 4.40
4741 13821 7.383102 AGGTTCAAGTTTATGAATACTGCAG 57.617 36.000 13.48 13.48 41.09 4.41
4744 13824 8.462016 GGTTCAAGTTTATGAATACTGCAGATT 58.538 33.333 23.35 15.31 41.09 2.40
4745 13825 9.846248 GTTCAAGTTTATGAATACTGCAGATTT 57.154 29.630 23.35 13.14 41.09 2.17
4746 13826 9.844790 TTCAAGTTTATGAATACTGCAGATTTG 57.155 29.630 23.35 7.87 34.50 2.32
4766 13846 2.602211 TGCAAACAACGCAATTTGACAG 59.398 40.909 0.00 0.00 37.91 3.51
4770 13850 2.808244 ACAACGCAATTTGACAGGTTG 58.192 42.857 15.33 15.33 40.27 3.77
4774 13854 2.223711 ACGCAATTTGACAGGTTGAACC 60.224 45.455 6.16 6.16 38.99 3.62
4775 13855 2.393764 GCAATTTGACAGGTTGAACCG 58.606 47.619 8.98 6.68 44.90 4.44
4777 13857 3.628017 CAATTTGACAGGTTGAACCGTC 58.372 45.455 23.09 23.09 44.90 4.79
4778 13858 1.292061 TTTGACAGGTTGAACCGTCG 58.708 50.000 23.70 14.28 44.90 5.12
4779 13859 0.531090 TTGACAGGTTGAACCGTCGG 60.531 55.000 23.70 10.48 44.90 4.79
4780 13860 1.666872 GACAGGTTGAACCGTCGGG 60.667 63.158 17.28 7.30 44.90 5.14
4785 13865 4.243008 TTGAACCGTCGGGCTGCA 62.243 61.111 17.28 4.91 36.48 4.41
4788 13868 2.282180 AACCGTCGGGCTGCAATT 60.282 55.556 17.28 0.00 36.48 2.32
4789 13869 2.527547 GAACCGTCGGGCTGCAATTG 62.528 60.000 17.28 0.00 36.48 2.32
4793 13873 0.729140 CGTCGGGCTGCAATTGTTTC 60.729 55.000 7.40 0.00 0.00 2.78
4794 13874 0.388520 GTCGGGCTGCAATTGTTTCC 60.389 55.000 7.40 5.49 0.00 3.13
4795 13875 0.539438 TCGGGCTGCAATTGTTTCCT 60.539 50.000 7.40 0.00 0.00 3.36
4797 13877 1.669795 CGGGCTGCAATTGTTTCCTTC 60.670 52.381 7.40 0.00 0.00 3.46
4798 13878 1.620323 GGGCTGCAATTGTTTCCTTCT 59.380 47.619 7.40 0.00 0.00 2.85
4799 13879 2.037641 GGGCTGCAATTGTTTCCTTCTT 59.962 45.455 7.40 0.00 0.00 2.52
4803 13883 5.406477 GGCTGCAATTGTTTCCTTCTTAAAG 59.594 40.000 7.40 0.00 0.00 1.85
4804 13884 6.215845 GCTGCAATTGTTTCCTTCTTAAAGA 58.784 36.000 7.40 0.00 34.14 2.52
4805 13885 6.870439 GCTGCAATTGTTTCCTTCTTAAAGAT 59.130 34.615 7.40 0.00 34.14 2.40
4806 13886 7.148689 GCTGCAATTGTTTCCTTCTTAAAGATG 60.149 37.037 7.40 0.00 34.14 2.90
4807 13887 7.725251 TGCAATTGTTTCCTTCTTAAAGATGT 58.275 30.769 7.40 0.00 34.14 3.06
4809 13889 9.045223 GCAATTGTTTCCTTCTTAAAGATGTTT 57.955 29.630 7.40 0.00 34.14 2.83
4825 13905 6.740411 AGATGTTTCTTTCTCAATCAGAGC 57.260 37.500 0.00 0.00 44.35 4.09
4826 13906 6.236409 AGATGTTTCTTTCTCAATCAGAGCA 58.764 36.000 0.00 0.00 44.35 4.26
4827 13907 5.936686 TGTTTCTTTCTCAATCAGAGCAG 57.063 39.130 0.00 0.00 44.35 4.24
4828 13908 4.214971 TGTTTCTTTCTCAATCAGAGCAGC 59.785 41.667 0.00 0.00 44.35 5.25
4830 13910 3.597255 TCTTTCTCAATCAGAGCAGCTG 58.403 45.455 10.11 10.11 44.35 4.24
4831 13911 2.398252 TTCTCAATCAGAGCAGCTGG 57.602 50.000 17.12 0.00 44.98 4.85
4832 13912 0.107800 TCTCAATCAGAGCAGCTGGC 60.108 55.000 17.12 7.98 44.98 4.85
4841 13921 2.350514 GCAGCTGGCTTCTGGAGT 59.649 61.111 17.12 0.00 40.25 3.85
4842 13922 1.744741 GCAGCTGGCTTCTGGAGTC 60.745 63.158 17.12 0.00 40.25 3.36
4843 13923 1.447489 CAGCTGGCTTCTGGAGTCG 60.447 63.158 5.57 0.00 30.55 4.18
4844 13924 2.817396 GCTGGCTTCTGGAGTCGC 60.817 66.667 0.00 0.00 30.55 5.19
4846 13926 1.447489 CTGGCTTCTGGAGTCGCTG 60.447 63.158 0.00 0.00 30.55 5.18
4848 13928 2.650116 GGCTTCTGGAGTCGCTGGA 61.650 63.158 0.00 0.00 0.00 3.86
4849 13929 1.153667 GCTTCTGGAGTCGCTGGAG 60.154 63.158 0.00 0.00 0.00 3.86
4850 13930 1.882989 GCTTCTGGAGTCGCTGGAGT 61.883 60.000 0.00 0.00 0.00 3.85
4851 13931 0.108898 CTTCTGGAGTCGCTGGAGTG 60.109 60.000 0.00 0.00 0.00 3.51
4852 13932 0.827925 TTCTGGAGTCGCTGGAGTGT 60.828 55.000 0.00 0.00 0.00 3.55
4854 13934 0.668706 CTGGAGTCGCTGGAGTGTTG 60.669 60.000 0.00 0.00 0.00 3.33
4855 13935 2.029844 GGAGTCGCTGGAGTGTTGC 61.030 63.158 0.00 0.00 0.00 4.17
4860 13940 3.555428 GCTGGAGTGTTGCGACTC 58.445 61.111 5.50 1.31 41.55 3.36
4861 13941 2.375766 GCTGGAGTGTTGCGACTCG 61.376 63.158 5.50 0.00 42.97 4.18
4862 13942 1.007271 CTGGAGTGTTGCGACTCGT 60.007 57.895 5.50 0.00 42.97 4.18
4863 13943 0.597637 CTGGAGTGTTGCGACTCGTT 60.598 55.000 5.50 0.00 42.97 3.85
4864 13944 0.874175 TGGAGTGTTGCGACTCGTTG 60.874 55.000 5.50 0.00 42.97 4.10
4866 13946 1.601162 GGAGTGTTGCGACTCGTTGTA 60.601 52.381 5.50 0.00 42.97 2.41
4867 13947 2.121786 GAGTGTTGCGACTCGTTGTAA 58.878 47.619 5.50 0.00 33.39 2.41
4868 13948 2.729882 GAGTGTTGCGACTCGTTGTAAT 59.270 45.455 5.50 0.00 33.39 1.89
4869 13949 2.729882 AGTGTTGCGACTCGTTGTAATC 59.270 45.455 5.50 0.00 0.00 1.75
4870 13950 2.473609 GTGTTGCGACTCGTTGTAATCA 59.526 45.455 5.50 0.00 0.00 2.57
4874 13954 1.321743 GCGACTCGTTGTAATCAGCTG 59.678 52.381 7.63 7.63 0.00 4.24
4876 13956 3.754955 CGACTCGTTGTAATCAGCTGTA 58.245 45.455 14.67 0.48 0.00 2.74
4878 13958 4.030306 CGACTCGTTGTAATCAGCTGTAAC 59.970 45.833 14.67 10.83 0.00 2.50
4879 13959 5.135508 ACTCGTTGTAATCAGCTGTAACT 57.864 39.130 14.67 0.00 0.00 2.24
4880 13960 4.923871 ACTCGTTGTAATCAGCTGTAACTG 59.076 41.667 14.67 9.89 39.12 3.16
4887 13967 2.099141 TCAGCTGTAACTGATGTGGC 57.901 50.000 14.67 0.00 41.72 5.01
4888 13968 1.089920 CAGCTGTAACTGATGTGGCC 58.910 55.000 5.25 0.00 40.25 5.36
4890 13970 1.065854 AGCTGTAACTGATGTGGCCTC 60.066 52.381 3.32 0.00 0.00 4.70
4891 13971 1.339055 GCTGTAACTGATGTGGCCTCA 60.339 52.381 10.45 10.45 0.00 3.86
4892 13972 2.681976 GCTGTAACTGATGTGGCCTCAT 60.682 50.000 20.00 20.00 0.00 2.90
4893 13973 3.432186 GCTGTAACTGATGTGGCCTCATA 60.432 47.826 19.93 8.20 0.00 2.15
4894 13974 4.769688 CTGTAACTGATGTGGCCTCATAA 58.230 43.478 19.93 12.31 0.00 1.90
4895 13975 5.371526 CTGTAACTGATGTGGCCTCATAAT 58.628 41.667 19.93 9.24 0.00 1.28
4896 13976 5.125356 TGTAACTGATGTGGCCTCATAATG 58.875 41.667 19.93 14.41 0.00 1.90
4898 13978 4.240881 ACTGATGTGGCCTCATAATGTT 57.759 40.909 19.93 0.00 0.00 2.71
4900 13980 3.554934 TGATGTGGCCTCATAATGTTCC 58.445 45.455 19.93 6.84 0.00 3.62
4902 13982 3.281727 TGTGGCCTCATAATGTTCCTC 57.718 47.619 3.32 0.00 0.00 3.71
4905 13985 3.817647 GTGGCCTCATAATGTTCCTCATC 59.182 47.826 3.32 0.00 35.48 2.92
4906 13986 3.718434 TGGCCTCATAATGTTCCTCATCT 59.282 43.478 3.32 0.00 35.48 2.90
4907 13987 4.202398 TGGCCTCATAATGTTCCTCATCTC 60.202 45.833 3.32 0.00 35.48 2.75
4908 13988 4.041444 GGCCTCATAATGTTCCTCATCTCT 59.959 45.833 0.00 0.00 35.48 3.10
4910 13990 6.239714 GGCCTCATAATGTTCCTCATCTCTTA 60.240 42.308 0.00 0.00 35.48 2.10
4912 13992 8.535335 GCCTCATAATGTTCCTCATCTCTTATA 58.465 37.037 0.00 0.00 35.48 0.98
4946 14026 6.335471 TGGCTTAATGGATAATTCTGCATG 57.665 37.500 0.00 0.00 31.82 4.06
4947 14027 5.244402 TGGCTTAATGGATAATTCTGCATGG 59.756 40.000 0.00 0.00 31.82 3.66
4948 14028 5.166398 GCTTAATGGATAATTCTGCATGGC 58.834 41.667 0.00 1.79 31.07 4.40
4949 14029 5.717119 CTTAATGGATAATTCTGCATGGCC 58.283 41.667 0.00 0.00 0.00 5.36
4951 14031 2.309613 TGGATAATTCTGCATGGCCAC 58.690 47.619 8.16 0.00 0.00 5.01
4952 14032 1.615392 GGATAATTCTGCATGGCCACC 59.385 52.381 8.16 2.09 0.00 4.61
4953 14033 2.309613 GATAATTCTGCATGGCCACCA 58.690 47.619 8.16 7.82 38.19 4.17
4957 14037 0.542467 TTCTGCATGGCCACCACATT 60.542 50.000 8.16 0.00 35.80 2.71
4958 14038 0.330941 TCTGCATGGCCACCACATTA 59.669 50.000 8.16 0.00 35.80 1.90
4960 14040 0.969917 TGCATGGCCACCACATTACC 60.970 55.000 8.16 0.00 35.80 2.85
4961 14041 0.684153 GCATGGCCACCACATTACCT 60.684 55.000 8.16 0.00 35.80 3.08
4962 14042 1.105457 CATGGCCACCACATTACCTG 58.895 55.000 8.16 0.00 35.80 4.00
4964 14044 0.998928 TGGCCACCACATTACCTGAT 59.001 50.000 0.00 0.00 0.00 2.90
4965 14045 1.340893 TGGCCACCACATTACCTGATG 60.341 52.381 0.00 0.00 0.00 3.07
4967 14047 2.292267 GCCACCACATTACCTGATGAG 58.708 52.381 0.00 0.00 0.00 2.90
4968 14048 2.292267 CCACCACATTACCTGATGAGC 58.708 52.381 0.00 0.00 0.00 4.26
4969 14049 2.356022 CCACCACATTACCTGATGAGCA 60.356 50.000 0.00 0.00 0.00 4.26
4970 14050 2.679837 CACCACATTACCTGATGAGCAC 59.320 50.000 0.00 0.00 0.00 4.40
4971 14051 2.573462 ACCACATTACCTGATGAGCACT 59.427 45.455 0.00 0.00 0.00 4.40
4972 14052 2.941064 CCACATTACCTGATGAGCACTG 59.059 50.000 0.00 0.00 0.00 3.66
4973 14053 2.941064 CACATTACCTGATGAGCACTGG 59.059 50.000 0.00 0.00 0.00 4.00
4974 14054 2.092753 ACATTACCTGATGAGCACTGGG 60.093 50.000 0.00 0.00 0.00 4.45
4975 14055 1.656587 TTACCTGATGAGCACTGGGT 58.343 50.000 0.00 0.00 0.00 4.51
4976 14056 1.656587 TACCTGATGAGCACTGGGTT 58.343 50.000 0.00 0.00 0.00 4.11
4977 14057 0.037303 ACCTGATGAGCACTGGGTTG 59.963 55.000 0.00 0.00 0.00 3.77
4979 14059 1.271543 CCTGATGAGCACTGGGTTGAA 60.272 52.381 0.00 0.00 0.00 2.69
4980 14060 2.619849 CCTGATGAGCACTGGGTTGAAT 60.620 50.000 0.00 0.00 0.00 2.57
4981 14061 3.087031 CTGATGAGCACTGGGTTGAATT 58.913 45.455 0.00 0.00 0.00 2.17
4983 14063 4.661222 TGATGAGCACTGGGTTGAATTTA 58.339 39.130 0.00 0.00 0.00 1.40
4984 14064 4.701651 TGATGAGCACTGGGTTGAATTTAG 59.298 41.667 0.00 0.00 0.00 1.85
4986 14066 4.469657 TGAGCACTGGGTTGAATTTAGTT 58.530 39.130 0.00 0.00 0.00 2.24
4987 14067 4.892934 TGAGCACTGGGTTGAATTTAGTTT 59.107 37.500 0.00 0.00 0.00 2.66
4990 14070 6.981722 AGCACTGGGTTGAATTTAGTTTTAG 58.018 36.000 0.00 0.00 0.00 1.85
4991 14071 6.775629 AGCACTGGGTTGAATTTAGTTTTAGA 59.224 34.615 0.00 0.00 0.00 2.10
4992 14072 7.040409 AGCACTGGGTTGAATTTAGTTTTAGAG 60.040 37.037 0.00 0.00 0.00 2.43
4993 14073 7.255486 GCACTGGGTTGAATTTAGTTTTAGAGT 60.255 37.037 0.00 0.00 0.00 3.24
4994 14074 8.076178 CACTGGGTTGAATTTAGTTTTAGAGTG 58.924 37.037 0.00 0.00 0.00 3.51
4996 14076 8.391075 TGGGTTGAATTTAGTTTTAGAGTGAG 57.609 34.615 0.00 0.00 0.00 3.51
4999 14079 9.052759 GGTTGAATTTAGTTTTAGAGTGAGTGA 57.947 33.333 0.00 0.00 0.00 3.41
5011 14091 1.935933 GTGAGTGACACGGAACAAGT 58.064 50.000 0.00 0.00 39.78 3.16
5013 14093 3.650139 GTGAGTGACACGGAACAAGTAT 58.350 45.455 0.00 0.00 39.78 2.12
5014 14094 3.673809 GTGAGTGACACGGAACAAGTATC 59.326 47.826 0.00 0.00 39.78 2.24
5016 14096 4.167268 GAGTGACACGGAACAAGTATCTC 58.833 47.826 0.00 0.00 0.00 2.75
5018 14098 2.894765 TGACACGGAACAAGTATCTCCA 59.105 45.455 0.00 0.00 0.00 3.86
5019 14099 3.513912 TGACACGGAACAAGTATCTCCAT 59.486 43.478 0.00 0.00 0.00 3.41
5022 14102 4.020573 ACACGGAACAAGTATCTCCATTGA 60.021 41.667 0.00 0.00 0.00 2.57
5023 14103 4.330074 CACGGAACAAGTATCTCCATTGAC 59.670 45.833 0.00 0.00 0.00 3.18
5025 14105 3.871594 GGAACAAGTATCTCCATTGACCG 59.128 47.826 0.00 0.00 0.00 4.79
5027 14107 2.501723 ACAAGTATCTCCATTGACCGCT 59.498 45.455 0.00 0.00 0.00 5.52
5028 14108 3.126831 CAAGTATCTCCATTGACCGCTC 58.873 50.000 0.00 0.00 0.00 5.03
5029 14109 2.388735 AGTATCTCCATTGACCGCTCA 58.611 47.619 0.00 0.00 0.00 4.26
5031 14111 2.029838 ATCTCCATTGACCGCTCAAC 57.970 50.000 0.00 0.00 39.28 3.18
5033 14113 1.066858 TCTCCATTGACCGCTCAACTC 60.067 52.381 0.00 0.00 39.28 3.01
5034 14114 0.976641 TCCATTGACCGCTCAACTCT 59.023 50.000 0.00 0.00 39.28 3.24
5035 14115 1.066858 TCCATTGACCGCTCAACTCTC 60.067 52.381 0.00 0.00 39.28 3.20
5036 14116 1.066573 CCATTGACCGCTCAACTCTCT 60.067 52.381 0.00 0.00 39.28 3.10
5037 14117 1.998315 CATTGACCGCTCAACTCTCTG 59.002 52.381 0.00 0.00 39.28 3.35
5038 14118 0.319900 TTGACCGCTCAACTCTCTGC 60.320 55.000 0.00 0.00 31.00 4.26
5039 14119 1.446966 GACCGCTCAACTCTCTGCC 60.447 63.158 0.00 0.00 0.00 4.85
5040 14120 1.882989 GACCGCTCAACTCTCTGCCT 61.883 60.000 0.00 0.00 0.00 4.75
5042 14122 1.603236 CCGCTCAACTCTCTGCCTCT 61.603 60.000 0.00 0.00 0.00 3.69
5044 14124 1.337635 CGCTCAACTCTCTGCCTCTTT 60.338 52.381 0.00 0.00 0.00 2.52
5046 14126 2.289320 GCTCAACTCTCTGCCTCTTTCA 60.289 50.000 0.00 0.00 0.00 2.69
5049 14129 4.152647 TCAACTCTCTGCCTCTTTCAGTA 58.847 43.478 0.00 0.00 33.48 2.74
5050 14130 4.588951 TCAACTCTCTGCCTCTTTCAGTAA 59.411 41.667 0.00 0.00 33.48 2.24
5052 14132 4.888917 ACTCTCTGCCTCTTTCAGTAAAC 58.111 43.478 0.00 0.00 33.48 2.01
5053 14133 4.591072 ACTCTCTGCCTCTTTCAGTAAACT 59.409 41.667 0.00 0.00 33.48 2.66
5054 14134 5.140747 TCTCTGCCTCTTTCAGTAAACTC 57.859 43.478 0.00 0.00 33.48 3.01
5055 14135 4.021016 TCTCTGCCTCTTTCAGTAAACTCC 60.021 45.833 0.00 0.00 33.48 3.85
5057 14137 3.999663 CTGCCTCTTTCAGTAAACTCCAG 59.000 47.826 0.00 0.00 0.00 3.86
5058 14138 3.391296 TGCCTCTTTCAGTAAACTCCAGT 59.609 43.478 0.00 0.00 0.00 4.00
5060 14140 5.248477 TGCCTCTTTCAGTAAACTCCAGTAT 59.752 40.000 0.00 0.00 0.00 2.12
5061 14141 5.582665 GCCTCTTTCAGTAAACTCCAGTATG 59.417 44.000 0.00 0.00 0.00 2.39
5062 14142 6.702329 CCTCTTTCAGTAAACTCCAGTATGT 58.298 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.604549 TCAACAATATGTCTGAACATTGCATT 58.395 30.769 0.00 0.00 43.74 3.56
12 13 8.157476 ACAACCTAGTTCTTCAACAATATGTCT 58.843 33.333 0.00 0.00 34.60 3.41
22 24 4.150897 AGCACACAACCTAGTTCTTCAA 57.849 40.909 0.00 0.00 0.00 2.69
30 32 3.944055 ACTCAGTAGCACACAACCTAG 57.056 47.619 0.00 0.00 0.00 3.02
151 153 6.574350 ACGCAAGAATAGCACTATAAACTCT 58.426 36.000 0.00 0.00 43.62 3.24
152 154 6.830114 ACGCAAGAATAGCACTATAAACTC 57.170 37.500 0.00 0.00 43.62 3.01
165 167 3.065786 CACGGTCTACCTACGCAAGAATA 59.934 47.826 0.00 0.00 43.62 1.75
167 169 1.200716 CACGGTCTACCTACGCAAGAA 59.799 52.381 0.00 0.00 43.62 2.52
206 208 9.639601 CACTAGATCTACTTGTGTCATGTTTAA 57.360 33.333 10.88 0.00 43.55 1.52
207 209 8.251026 CCACTAGATCTACTTGTGTCATGTTTA 58.749 37.037 15.61 0.00 45.74 2.01
208 210 7.099764 CCACTAGATCTACTTGTGTCATGTTT 58.900 38.462 15.61 0.00 45.74 2.83
209 211 6.211584 ACCACTAGATCTACTTGTGTCATGTT 59.788 38.462 15.61 0.00 45.74 2.71
215 217 8.041323 CCAAAATACCACTAGATCTACTTGTGT 58.959 37.037 15.61 10.54 45.74 3.72
216 218 8.258007 TCCAAAATACCACTAGATCTACTTGTG 58.742 37.037 11.77 11.77 46.36 3.33
223 225 9.533831 AACAATTTCCAAAATACCACTAGATCT 57.466 29.630 0.00 0.00 0.00 2.75
235 237 7.862512 TGAGCAAGAAAACAATTTCCAAAAT 57.137 28.000 0.00 0.00 44.96 1.82
257 259 5.669904 TCCTACTGTTTTCCCATGGATATGA 59.330 40.000 15.22 0.00 36.36 2.15
264 266 8.674607 GTTACTATTTCCTACTGTTTTCCCATG 58.325 37.037 0.00 0.00 0.00 3.66
268 270 8.611654 TGTGTTACTATTTCCTACTGTTTTCC 57.388 34.615 0.00 0.00 0.00 3.13
285 287 7.646548 TCTGACTAGCTGATATTGTGTTACT 57.353 36.000 0.00 0.00 0.00 2.24
286 288 7.759886 TGTTCTGACTAGCTGATATTGTGTTAC 59.240 37.037 0.00 0.00 0.00 2.50
287 289 7.759886 GTGTTCTGACTAGCTGATATTGTGTTA 59.240 37.037 0.00 0.00 0.00 2.41
288 290 6.591834 GTGTTCTGACTAGCTGATATTGTGTT 59.408 38.462 0.00 0.00 0.00 3.32
323 325 4.670765 AGTCTATAATACGGTACCCCTGG 58.329 47.826 6.25 0.00 0.00 4.45
331 333 8.692710 TGTCTGATGAAAAGTCTATAATACGGT 58.307 33.333 0.00 0.00 0.00 4.83
332 334 9.529325 TTGTCTGATGAAAAGTCTATAATACGG 57.471 33.333 0.00 0.00 0.00 4.02
354 356 4.737855 TGAGCTTATGGTCTAGGTTGTC 57.262 45.455 8.99 0.00 40.98 3.18
361 363 4.461431 TCTGTCGTTTGAGCTTATGGTCTA 59.539 41.667 8.99 0.00 40.98 2.59
376 378 7.273381 CAGTCATTCTTTTTGTTTTCTGTCGTT 59.727 33.333 0.00 0.00 0.00 3.85
379 381 6.531240 TGCAGTCATTCTTTTTGTTTTCTGTC 59.469 34.615 0.00 0.00 0.00 3.51
388 390 7.795272 GCTAAACAAATGCAGTCATTCTTTTTG 59.205 33.333 0.00 0.00 41.77 2.44
389 391 7.712205 AGCTAAACAAATGCAGTCATTCTTTTT 59.288 29.630 0.00 0.00 41.77 1.94
390 392 7.170320 CAGCTAAACAAATGCAGTCATTCTTTT 59.830 33.333 0.00 0.00 41.77 2.27
428 430 3.609853 CTTAACTGCCCACTGAATAGCA 58.390 45.455 0.00 0.00 0.00 3.49
434 436 3.674997 CTTAAGCTTAACTGCCCACTGA 58.325 45.455 14.96 0.00 0.00 3.41
435 437 2.162408 GCTTAAGCTTAACTGCCCACTG 59.838 50.000 20.38 3.68 38.21 3.66
436 438 2.437413 GCTTAAGCTTAACTGCCCACT 58.563 47.619 20.38 0.00 38.21 4.00
437 439 1.472878 GGCTTAAGCTTAACTGCCCAC 59.527 52.381 27.45 11.61 41.70 4.61
438 440 1.834188 GGCTTAAGCTTAACTGCCCA 58.166 50.000 27.45 5.20 41.70 5.36
439 441 0.733150 CGGCTTAAGCTTAACTGCCC 59.267 55.000 29.67 19.58 41.70 5.36
440 442 1.397343 GACGGCTTAAGCTTAACTGCC 59.603 52.381 27.71 27.71 41.70 4.85
465 467 0.377203 GCCCACTTATTTTCGGCTCG 59.623 55.000 0.00 0.00 36.65 5.03
498 500 3.880047 TTCTACCAACTACATGTCCCG 57.120 47.619 0.00 0.00 0.00 5.14
499 501 6.002082 ACTTTTTCTACCAACTACATGTCCC 58.998 40.000 0.00 0.00 0.00 4.46
517 519 2.040145 CCATGGGCATTTGGGACTTTTT 59.960 45.455 2.85 0.00 0.00 1.94
545 547 4.637534 CCGAATCAGGACTGAAACATCATT 59.362 41.667 6.06 0.00 43.58 2.57
555 557 1.811266 CCGTGCCGAATCAGGACTG 60.811 63.158 0.00 0.00 0.00 3.51
563 565 1.099689 CCCAATAAACCGTGCCGAAT 58.900 50.000 0.00 0.00 0.00 3.34
566 568 0.599060 AAACCCAATAAACCGTGCCG 59.401 50.000 0.00 0.00 0.00 5.69
567 569 2.224090 ACAAAACCCAATAAACCGTGCC 60.224 45.455 0.00 0.00 0.00 5.01
648 650 9.195411 GTTCTTTGCATCATTTCACTTCATAAA 57.805 29.630 0.00 0.00 0.00 1.40
653 655 7.170320 ACATTGTTCTTTGCATCATTTCACTTC 59.830 33.333 0.00 0.00 0.00 3.01
684 686 7.822658 TCGCCTTTAAATGCTTTTAACTACAT 58.177 30.769 15.02 0.00 37.10 2.29
687 689 8.948145 TGTATCGCCTTTAAATGCTTTTAACTA 58.052 29.630 15.02 3.79 37.10 2.24
755 757 7.268447 GTCTACGAACAATTTCTTAATGTGTGC 59.732 37.037 0.00 0.00 0.00 4.57
773 776 1.905637 TCTGCTCCAGTGTCTACGAA 58.094 50.000 0.00 0.00 32.61 3.85
847 850 1.134007 CCAGCAGCATCCCACATTCTA 60.134 52.381 0.00 0.00 0.00 2.10
849 852 0.394762 TCCAGCAGCATCCCACATTC 60.395 55.000 0.00 0.00 0.00 2.67
855 858 1.069358 GTAGTAGTCCAGCAGCATCCC 59.931 57.143 0.00 0.00 0.00 3.85
860 863 1.134699 TGCATGTAGTAGTCCAGCAGC 60.135 52.381 0.00 0.00 0.00 5.25
878 881 5.702865 TGACTCAAGAACAAAGCAATATGC 58.297 37.500 0.00 0.00 45.46 3.14
879 882 8.752766 AAATGACTCAAGAACAAAGCAATATG 57.247 30.769 0.00 0.00 0.00 1.78
914 964 9.801873 CGATGGTGGACAATAAGAAATTAATTT 57.198 29.630 13.24 13.24 0.00 1.82
915 965 8.413229 CCGATGGTGGACAATAAGAAATTAATT 58.587 33.333 0.00 0.00 0.00 1.40
916 966 7.470009 GCCGATGGTGGACAATAAGAAATTAAT 60.470 37.037 0.00 0.00 0.00 1.40
917 967 6.183360 GCCGATGGTGGACAATAAGAAATTAA 60.183 38.462 0.00 0.00 0.00 1.40
918 968 5.298276 GCCGATGGTGGACAATAAGAAATTA 59.702 40.000 0.00 0.00 0.00 1.40
921 971 3.013921 GCCGATGGTGGACAATAAGAAA 58.986 45.455 0.00 0.00 0.00 2.52
925 975 3.073086 CGCCGATGGTGGACAATAA 57.927 52.632 0.00 0.00 0.00 1.40
926 976 4.846551 CGCCGATGGTGGACAATA 57.153 55.556 0.00 0.00 0.00 1.90
933 983 2.233605 TACTGGAACCGCCGATGGTG 62.234 60.000 0.00 0.00 42.89 4.17
934 984 1.335132 ATACTGGAACCGCCGATGGT 61.335 55.000 0.00 0.00 46.67 3.55
935 985 0.677288 TATACTGGAACCGCCGATGG 59.323 55.000 0.00 0.00 40.66 3.51
936 986 2.519377 TTATACTGGAACCGCCGATG 57.481 50.000 0.00 0.00 40.66 3.84
958 1008 0.319555 TGTGCAACGGTAGCTCACTC 60.320 55.000 0.00 0.00 42.39 3.51
983 1036 3.134458 GGCATTGATACTGTACCTGCTC 58.866 50.000 10.53 0.00 0.00 4.26
987 1040 2.764010 TGTCGGCATTGATACTGTACCT 59.236 45.455 0.00 0.00 0.00 3.08
1101 1156 4.827087 ACTCCGCCGCAGCTCATG 62.827 66.667 0.00 0.00 36.60 3.07
1251 1306 2.029844 GAGCAACACCAGCGACTCC 61.030 63.158 0.00 0.00 37.01 3.85
1383 1441 3.125573 CCGAGGACGACGAGCTCA 61.126 66.667 15.40 0.00 42.66 4.26
1384 1442 4.539881 GCCGAGGACGACGAGCTC 62.540 72.222 2.73 2.73 42.66 4.09
1455 1513 1.330829 GTGTAGTAGGCGTACGGGTAC 59.669 57.143 18.39 8.73 33.97 3.34
1456 1514 1.663695 GTGTAGTAGGCGTACGGGTA 58.336 55.000 18.39 0.00 33.97 3.69
1457 1515 1.032114 GGTGTAGTAGGCGTACGGGT 61.032 60.000 18.39 0.00 33.97 5.28
1458 1516 1.729881 GGTGTAGTAGGCGTACGGG 59.270 63.158 18.39 0.00 33.97 5.28
1459 1517 1.353103 CGGTGTAGTAGGCGTACGG 59.647 63.158 18.39 0.00 33.97 4.02
1460 1518 1.353103 CCGGTGTAGTAGGCGTACG 59.647 63.158 11.84 11.84 33.97 3.67
1830 1924 0.890996 AGCACTTGCAGTTGTAGCCC 60.891 55.000 3.62 0.00 45.16 5.19
2104 3533 6.086222 CGAAATCACCGAAATTCAGTGAATT 58.914 36.000 22.70 22.70 43.29 2.17
2106 3535 4.083537 CCGAAATCACCGAAATTCAGTGAA 60.084 41.667 15.00 8.27 43.29 3.18
2107 3536 3.435327 CCGAAATCACCGAAATTCAGTGA 59.565 43.478 13.62 13.62 44.11 3.41
2108 3537 3.188460 ACCGAAATCACCGAAATTCAGTG 59.812 43.478 3.07 3.07 0.00 3.66
2109 3538 3.408634 ACCGAAATCACCGAAATTCAGT 58.591 40.909 0.00 0.00 0.00 3.41
2110 3539 4.158384 CAACCGAAATCACCGAAATTCAG 58.842 43.478 0.00 0.00 0.00 3.02
2111 3540 3.610585 GCAACCGAAATCACCGAAATTCA 60.611 43.478 0.00 0.00 0.00 2.57
2112 3541 2.914838 GCAACCGAAATCACCGAAATTC 59.085 45.455 0.00 0.00 0.00 2.17
2113 3542 2.556622 AGCAACCGAAATCACCGAAATT 59.443 40.909 0.00 0.00 0.00 1.82
2114 3543 2.095263 CAGCAACCGAAATCACCGAAAT 60.095 45.455 0.00 0.00 0.00 2.17
2115 3544 1.265635 CAGCAACCGAAATCACCGAAA 59.734 47.619 0.00 0.00 0.00 3.46
2116 3545 0.871722 CAGCAACCGAAATCACCGAA 59.128 50.000 0.00 0.00 0.00 4.30
2117 3546 1.573829 GCAGCAACCGAAATCACCGA 61.574 55.000 0.00 0.00 0.00 4.69
2118 3547 1.154225 GCAGCAACCGAAATCACCG 60.154 57.895 0.00 0.00 0.00 4.94
2119 3548 0.109597 CAGCAGCAACCGAAATCACC 60.110 55.000 0.00 0.00 0.00 4.02
2120 3549 0.874390 TCAGCAGCAACCGAAATCAC 59.126 50.000 0.00 0.00 0.00 3.06
2135 3564 6.758416 ACTTTGAGTTTCAGGAAAATTTCAGC 59.242 34.615 8.09 0.00 30.15 4.26
2136 3565 7.975616 TCACTTTGAGTTTCAGGAAAATTTCAG 59.024 33.333 8.09 0.00 30.15 3.02
2137 3566 7.835822 TCACTTTGAGTTTCAGGAAAATTTCA 58.164 30.769 8.09 0.00 31.33 2.69
2138 3567 8.702163 TTCACTTTGAGTTTCAGGAAAATTTC 57.298 30.769 0.00 0.00 31.33 2.17
2139 3568 9.500785 TTTTCACTTTGAGTTTCAGGAAAATTT 57.499 25.926 0.00 0.00 30.64 1.82
2140 3569 8.935844 GTTTTCACTTTGAGTTTCAGGAAAATT 58.064 29.630 0.00 0.00 36.01 1.82
2146 3577 5.323371 TGGTTTTCACTTTGAGTTTCAGG 57.677 39.130 0.00 0.00 0.00 3.86
2149 3580 9.447040 GTACTATTGGTTTTCACTTTGAGTTTC 57.553 33.333 0.00 0.00 0.00 2.78
2155 3586 7.745620 AGGAGTACTATTGGTTTTCACTTTG 57.254 36.000 0.00 0.00 0.00 2.77
2184 3615 7.065803 GGGTGTACAACTAGAACATACGTACTA 59.934 40.741 11.44 0.00 31.33 1.82
2185 3616 6.127897 GGGTGTACAACTAGAACATACGTACT 60.128 42.308 11.44 0.00 31.33 2.73
2186 3617 6.030228 GGGTGTACAACTAGAACATACGTAC 58.970 44.000 11.44 0.00 0.00 3.67
2187 3618 5.945784 AGGGTGTACAACTAGAACATACGTA 59.054 40.000 11.44 0.00 0.00 3.57
2188 3619 4.768968 AGGGTGTACAACTAGAACATACGT 59.231 41.667 11.44 0.00 0.00 3.57
2189 3620 5.125097 AGAGGGTGTACAACTAGAACATACG 59.875 44.000 11.44 0.00 0.00 3.06
2193 3624 4.220724 ACAGAGGGTGTACAACTAGAACA 58.779 43.478 11.44 0.00 37.75 3.18
2197 3628 8.529476 AGTATAAAACAGAGGGTGTACAACTAG 58.471 37.037 11.44 5.26 39.03 2.57
2251 3682 4.141855 ACGGTCAAAGTTTCTAAATGCG 57.858 40.909 0.00 0.00 0.00 4.73
2260 3691 5.576447 ACAAAGATTGACGGTCAAAGTTT 57.424 34.783 25.64 22.24 40.12 2.66
2336 3767 4.422073 TGGCTGGAAACTATACCATCAG 57.578 45.455 0.00 0.00 35.54 2.90
2406 3839 4.397417 GTCTTAGAAAACATGCAGCCAGAT 59.603 41.667 0.00 0.00 0.00 2.90
2411 3844 3.253188 TGGTGTCTTAGAAAACATGCAGC 59.747 43.478 0.00 0.00 0.00 5.25
2439 3876 8.715088 TCGACTGCTTAAAACCTTATTTCTAAC 58.285 33.333 0.00 0.00 0.00 2.34
2449 3979 3.587797 TCGATCGACTGCTTAAAACCT 57.412 42.857 15.15 0.00 0.00 3.50
2457 4135 0.823769 TAGGGCATCGATCGACTGCT 60.824 55.000 31.99 23.24 36.18 4.24
2504 7092 7.101700 GGATGTGCACATTCATCTATATCTGA 58.898 38.462 31.82 0.00 39.93 3.27
2602 7190 0.173481 TTCTTGGGTCATCGCTCTCG 59.827 55.000 0.00 0.00 0.00 4.04
2634 7222 2.031120 CAGCAAGTGGGAACTTTGGAA 58.969 47.619 0.00 0.00 0.00 3.53
2667 7255 2.568623 AGTTTGCCTGAGGTTACCTG 57.431 50.000 9.39 0.00 31.76 4.00
2836 7651 0.620556 CACCCACCCATTCAGCTAGT 59.379 55.000 0.00 0.00 0.00 2.57
2868 7704 7.755373 TCACTTGTAGATCTCAAACAGTAATCG 59.245 37.037 0.00 0.00 0.00 3.34
2874 7710 5.541845 TGGTCACTTGTAGATCTCAAACAG 58.458 41.667 0.00 0.00 0.00 3.16
2946 8994 0.174845 TAAGATTGTGTCCCTCGGCG 59.825 55.000 0.00 0.00 0.00 6.46
2947 8995 2.622064 ATAAGATTGTGTCCCTCGGC 57.378 50.000 0.00 0.00 0.00 5.54
2966 9014 5.938710 GTCTCGGATCCTACATGATACAGTA 59.061 44.000 10.75 0.00 0.00 2.74
2967 9015 4.762765 GTCTCGGATCCTACATGATACAGT 59.237 45.833 10.75 0.00 0.00 3.55
2969 9017 3.751698 CGTCTCGGATCCTACATGATACA 59.248 47.826 10.75 0.00 0.00 2.29
2985 9033 0.457166 TTGAATGTACCCGCGTCTCG 60.457 55.000 4.92 0.00 38.08 4.04
3093 12152 2.430956 CGTAAATGCGATGACAAGTGC 58.569 47.619 0.00 0.00 0.00 4.40
3112 12171 5.996219 TCCGAATAATAATGACAAATGCCG 58.004 37.500 0.00 0.00 0.00 5.69
3119 12178 7.042725 CGCTTCTCTTTCCGAATAATAATGACA 60.043 37.037 0.00 0.00 0.00 3.58
3247 12306 6.652900 GCCACCTTTTCCAATTAAATTGCTAA 59.347 34.615 0.00 0.00 38.92 3.09
3369 12428 4.939255 ACTTGGGATTGGATGATGACTTT 58.061 39.130 0.00 0.00 0.00 2.66
3665 12724 4.661222 TCAACCTTGATATGCCAAAGTCA 58.339 39.130 0.00 0.00 31.01 3.41
3797 12856 1.831736 ACCTCTAAGATGACAACCCCG 59.168 52.381 0.00 0.00 0.00 5.73
4127 13194 2.236395 ACTTCGACTTCGGAATGGGAAT 59.764 45.455 0.00 0.00 40.29 3.01
4192 13259 6.409704 TCTCAGAGCAGCAAATACAATAAGT 58.590 36.000 0.00 0.00 0.00 2.24
4217 13284 3.072622 ACAAGTTCTCTGAAACCCCTACC 59.927 47.826 0.00 0.00 0.00 3.18
4244 13321 4.326278 ACACACGATTACTTGCTACATTCG 59.674 41.667 0.00 0.00 0.00 3.34
4315 13392 1.068333 GGAGCAAGAGCAAATCGCAAA 60.068 47.619 0.00 0.00 46.13 3.68
4397 13477 7.940850 ACTCTAGCAGATCTCTGAATTCTTAC 58.059 38.462 11.34 0.00 46.59 2.34
4484 13564 5.355071 CCTTGCAAATCACTCTAGTGCATAA 59.645 40.000 0.00 0.00 44.13 1.90
4531 13611 3.441290 CGACGAGCTTCCTCCGGT 61.441 66.667 0.00 0.00 34.49 5.28
4533 13613 2.100603 GACGACGAGCTTCCTCCG 59.899 66.667 0.00 0.00 34.49 4.63
4534 13614 2.100603 CGACGACGAGCTTCCTCC 59.899 66.667 0.00 0.00 42.66 4.30
4535 13615 1.226073 GACGACGACGAGCTTCCTC 60.226 63.158 15.32 0.00 42.66 3.71
4537 13617 2.573689 CGACGACGACGAGCTTCC 60.574 66.667 15.32 0.00 42.66 3.46
4539 13619 2.172900 GACGACGACGACGAGCTT 59.827 61.111 25.15 3.47 42.66 3.74
4565 13645 1.996191 GAGTTTCTCAACGCTGGCTAG 59.004 52.381 0.00 0.00 38.03 3.42
4567 13647 0.946221 CGAGTTTCTCAACGCTGGCT 60.946 55.000 0.00 0.00 38.03 4.75
4568 13648 1.493311 CGAGTTTCTCAACGCTGGC 59.507 57.895 0.00 0.00 38.03 4.85
4569 13649 0.319555 TCCGAGTTTCTCAACGCTGG 60.320 55.000 0.00 0.00 38.03 4.85
4570 13650 1.063806 CTCCGAGTTTCTCAACGCTG 58.936 55.000 0.00 0.00 38.03 5.18
4571 13651 0.667792 GCTCCGAGTTTCTCAACGCT 60.668 55.000 0.00 0.00 38.03 5.07
4572 13652 0.944311 TGCTCCGAGTTTCTCAACGC 60.944 55.000 0.00 0.00 38.03 4.84
4573 13653 1.192534 GTTGCTCCGAGTTTCTCAACG 59.807 52.381 0.00 0.00 38.03 4.10
4575 13655 1.202486 ACGTTGCTCCGAGTTTCTCAA 60.202 47.619 2.64 0.00 0.00 3.02
4576 13656 0.387929 ACGTTGCTCCGAGTTTCTCA 59.612 50.000 2.64 0.00 0.00 3.27
4577 13657 1.192534 CAACGTTGCTCCGAGTTTCTC 59.807 52.381 16.51 0.00 0.00 2.87
4579 13659 1.214367 TCAACGTTGCTCCGAGTTTC 58.786 50.000 23.47 0.00 0.00 2.78
4580 13660 1.658994 TTCAACGTTGCTCCGAGTTT 58.341 45.000 23.47 0.00 0.00 2.66
4581 13661 1.597663 CTTTCAACGTTGCTCCGAGTT 59.402 47.619 23.47 0.00 0.00 3.01
4582 13662 1.217882 CTTTCAACGTTGCTCCGAGT 58.782 50.000 23.47 0.00 0.00 4.18
4583 13663 0.110644 GCTTTCAACGTTGCTCCGAG 60.111 55.000 23.47 15.30 0.00 4.63
4584 13664 0.812014 TGCTTTCAACGTTGCTCCGA 60.812 50.000 23.47 2.69 0.00 4.55
4585 13665 0.384725 CTGCTTTCAACGTTGCTCCG 60.385 55.000 23.47 11.96 0.00 4.63
4586 13666 0.944386 TCTGCTTTCAACGTTGCTCC 59.056 50.000 23.47 11.44 0.00 4.70
4587 13667 2.376032 GTTCTGCTTTCAACGTTGCTC 58.624 47.619 23.47 11.74 0.00 4.26
4589 13669 1.202245 TGGTTCTGCTTTCAACGTTGC 60.202 47.619 23.47 12.27 0.00 4.17
4590 13670 2.842208 TGGTTCTGCTTTCAACGTTG 57.158 45.000 22.35 22.35 0.00 4.10
4592 13672 2.479560 GCTTTGGTTCTGCTTTCAACGT 60.480 45.455 0.00 0.00 0.00 3.99
4594 13674 3.118542 CAGCTTTGGTTCTGCTTTCAAC 58.881 45.455 0.00 0.00 34.51 3.18
4609 13689 1.701847 TCTCTCCCTCAAAGCAGCTTT 59.298 47.619 15.07 15.07 33.58 3.51
4610 13690 1.278699 CTCTCTCCCTCAAAGCAGCTT 59.721 52.381 0.21 0.21 0.00 3.74
4612 13692 0.901124 TCTCTCTCCCTCAAAGCAGC 59.099 55.000 0.00 0.00 0.00 5.25
4613 13693 1.206849 GGTCTCTCTCCCTCAAAGCAG 59.793 57.143 0.00 0.00 0.00 4.24
4614 13694 1.270907 GGTCTCTCTCCCTCAAAGCA 58.729 55.000 0.00 0.00 0.00 3.91
4615 13695 0.174617 CGGTCTCTCTCCCTCAAAGC 59.825 60.000 0.00 0.00 0.00 3.51
4616 13696 1.474879 GTCGGTCTCTCTCCCTCAAAG 59.525 57.143 0.00 0.00 0.00 2.77
4617 13697 1.203013 TGTCGGTCTCTCTCCCTCAAA 60.203 52.381 0.00 0.00 0.00 2.69
4618 13698 0.404426 TGTCGGTCTCTCTCCCTCAA 59.596 55.000 0.00 0.00 0.00 3.02
4619 13699 0.034960 CTGTCGGTCTCTCTCCCTCA 60.035 60.000 0.00 0.00 0.00 3.86
4621 13701 0.699399 TTCTGTCGGTCTCTCTCCCT 59.301 55.000 0.00 0.00 0.00 4.20
4622 13702 1.546961 TTTCTGTCGGTCTCTCTCCC 58.453 55.000 0.00 0.00 0.00 4.30
4623 13703 2.352912 GGTTTTCTGTCGGTCTCTCTCC 60.353 54.545 0.00 0.00 0.00 3.71
4625 13705 2.297597 CTGGTTTTCTGTCGGTCTCTCT 59.702 50.000 0.00 0.00 0.00 3.10
4626 13706 2.610727 CCTGGTTTTCTGTCGGTCTCTC 60.611 54.545 0.00 0.00 0.00 3.20
4627 13707 1.344763 CCTGGTTTTCTGTCGGTCTCT 59.655 52.381 0.00 0.00 0.00 3.10
4628 13708 1.797025 CCTGGTTTTCTGTCGGTCTC 58.203 55.000 0.00 0.00 0.00 3.36
4629 13709 0.250338 GCCTGGTTTTCTGTCGGTCT 60.250 55.000 0.00 0.00 0.00 3.85
4630 13710 0.250338 AGCCTGGTTTTCTGTCGGTC 60.250 55.000 0.00 0.00 0.00 4.79
4631 13711 0.182775 AAGCCTGGTTTTCTGTCGGT 59.817 50.000 0.00 0.00 0.00 4.69
4632 13712 0.875059 GAAGCCTGGTTTTCTGTCGG 59.125 55.000 0.00 0.00 0.00 4.79
4633 13713 0.875059 GGAAGCCTGGTTTTCTGTCG 59.125 55.000 0.00 0.00 0.00 4.35
4634 13714 2.155279 GAGGAAGCCTGGTTTTCTGTC 58.845 52.381 9.02 4.99 31.76 3.51
4635 13715 1.543429 CGAGGAAGCCTGGTTTTCTGT 60.543 52.381 9.02 0.00 31.76 3.41
4636 13716 1.160137 CGAGGAAGCCTGGTTTTCTG 58.840 55.000 9.02 0.00 31.76 3.02
4637 13717 0.606673 GCGAGGAAGCCTGGTTTTCT 60.607 55.000 3.43 3.43 31.76 2.52
4647 13727 0.881118 TGTTTTGATGGCGAGGAAGC 59.119 50.000 0.00 0.00 0.00 3.86
4648 13728 2.293122 TGTTGTTTTGATGGCGAGGAAG 59.707 45.455 0.00 0.00 0.00 3.46
4651 13731 2.034558 ACTTGTTGTTTTGATGGCGAGG 59.965 45.455 0.00 0.00 0.00 4.63
4652 13732 3.354089 ACTTGTTGTTTTGATGGCGAG 57.646 42.857 0.00 0.00 0.00 5.03
4654 13734 3.443037 TCAACTTGTTGTTTTGATGGCG 58.557 40.909 12.44 0.00 36.63 5.69
4657 13737 8.441608 TGATTTGTTCAACTTGTTGTTTTGATG 58.558 29.630 12.44 0.00 36.63 3.07
4658 13738 8.545229 TGATTTGTTCAACTTGTTGTTTTGAT 57.455 26.923 12.44 4.47 36.63 2.57
4659 13739 7.953158 TGATTTGTTCAACTTGTTGTTTTGA 57.047 28.000 12.44 0.00 36.63 2.69
4662 13742 9.609950 CAAAATGATTTGTTCAACTTGTTGTTT 57.390 25.926 12.44 1.54 40.84 2.83
4680 13760 7.280876 ACTCGAACTGCATACATACAAAATGAT 59.719 33.333 0.00 0.00 0.00 2.45
4681 13761 6.593770 ACTCGAACTGCATACATACAAAATGA 59.406 34.615 0.00 0.00 0.00 2.57
4682 13762 6.775088 ACTCGAACTGCATACATACAAAATG 58.225 36.000 0.00 0.00 0.00 2.32
4685 13765 5.720202 AGACTCGAACTGCATACATACAAA 58.280 37.500 0.00 0.00 0.00 2.83
4686 13766 5.324784 AGACTCGAACTGCATACATACAA 57.675 39.130 0.00 0.00 0.00 2.41
4688 13768 6.470160 CAAAAGACTCGAACTGCATACATAC 58.530 40.000 0.00 0.00 0.00 2.39
4689 13769 5.063438 GCAAAAGACTCGAACTGCATACATA 59.937 40.000 0.00 0.00 0.00 2.29
4690 13770 4.142816 GCAAAAGACTCGAACTGCATACAT 60.143 41.667 0.00 0.00 0.00 2.29
4691 13771 3.186409 GCAAAAGACTCGAACTGCATACA 59.814 43.478 0.00 0.00 0.00 2.29
4692 13772 3.433615 AGCAAAAGACTCGAACTGCATAC 59.566 43.478 0.00 0.00 32.21 2.39
4693 13773 3.664107 AGCAAAAGACTCGAACTGCATA 58.336 40.909 0.00 0.00 32.21 3.14
4695 13775 1.867233 GAGCAAAAGACTCGAACTGCA 59.133 47.619 0.00 0.00 32.21 4.41
4699 13779 3.915536 ACCTAGAGCAAAAGACTCGAAC 58.084 45.455 0.00 0.00 39.23 3.95
4700 13780 4.038763 TGAACCTAGAGCAAAAGACTCGAA 59.961 41.667 0.00 0.00 39.23 3.71
4701 13781 3.572682 TGAACCTAGAGCAAAAGACTCGA 59.427 43.478 0.00 0.00 39.23 4.04
4702 13782 3.914312 TGAACCTAGAGCAAAAGACTCG 58.086 45.455 0.00 0.00 39.23 4.18
4703 13783 5.301555 ACTTGAACCTAGAGCAAAAGACTC 58.698 41.667 0.00 0.00 0.00 3.36
4704 13784 5.297569 ACTTGAACCTAGAGCAAAAGACT 57.702 39.130 0.00 0.00 0.00 3.24
4706 13786 7.936847 TCATAAACTTGAACCTAGAGCAAAAGA 59.063 33.333 0.00 0.00 0.00 2.52
4707 13787 8.099364 TCATAAACTTGAACCTAGAGCAAAAG 57.901 34.615 0.00 0.00 0.00 2.27
4709 13789 8.635765 ATTCATAAACTTGAACCTAGAGCAAA 57.364 30.769 0.00 0.00 38.37 3.68
4711 13791 8.540388 AGTATTCATAAACTTGAACCTAGAGCA 58.460 33.333 0.00 0.00 38.37 4.26
4713 13793 8.821894 GCAGTATTCATAAACTTGAACCTAGAG 58.178 37.037 0.00 0.00 38.37 2.43
4715 13795 8.492673 TGCAGTATTCATAAACTTGAACCTAG 57.507 34.615 0.00 0.00 38.37 3.02
4716 13796 8.318412 TCTGCAGTATTCATAAACTTGAACCTA 58.682 33.333 14.67 0.00 38.37 3.08
4718 13798 7.377766 TCTGCAGTATTCATAAACTTGAACC 57.622 36.000 14.67 0.00 38.37 3.62
4719 13799 9.846248 AAATCTGCAGTATTCATAAACTTGAAC 57.154 29.630 14.67 0.00 38.37 3.18
4720 13800 9.844790 CAAATCTGCAGTATTCATAAACTTGAA 57.155 29.630 14.67 0.00 39.77 2.69
4745 13825 2.602211 CTGTCAAATTGCGTTGTTTGCA 59.398 40.909 0.00 0.00 41.38 4.08
4746 13826 2.033832 CCTGTCAAATTGCGTTGTTTGC 60.034 45.455 0.00 0.00 35.76 3.68
4747 13827 3.186119 ACCTGTCAAATTGCGTTGTTTG 58.814 40.909 0.00 0.00 36.82 2.93
4748 13828 3.518634 ACCTGTCAAATTGCGTTGTTT 57.481 38.095 0.00 0.00 0.00 2.83
4749 13829 3.119316 TCAACCTGTCAAATTGCGTTGTT 60.119 39.130 11.68 1.94 33.88 2.83
4750 13830 2.425312 TCAACCTGTCAAATTGCGTTGT 59.575 40.909 11.68 0.00 33.88 3.32
4751 13831 3.077229 TCAACCTGTCAAATTGCGTTG 57.923 42.857 7.99 7.99 33.55 4.10
4752 13832 3.443976 GTTCAACCTGTCAAATTGCGTT 58.556 40.909 0.00 0.00 0.00 4.84
4753 13833 2.223711 GGTTCAACCTGTCAAATTGCGT 60.224 45.455 0.00 0.00 34.73 5.24
4754 13834 2.393764 GGTTCAACCTGTCAAATTGCG 58.606 47.619 0.00 0.00 34.73 4.85
4755 13835 2.223711 ACGGTTCAACCTGTCAAATTGC 60.224 45.455 4.68 0.00 35.66 3.56
4759 13839 1.292061 CGACGGTTCAACCTGTCAAA 58.708 50.000 22.91 0.00 39.80 2.69
4763 13843 2.424302 CCCGACGGTTCAACCTGT 59.576 61.111 13.94 4.31 35.66 4.00
4766 13846 3.047877 CAGCCCGACGGTTCAACC 61.048 66.667 13.94 0.00 34.05 3.77
4770 13850 2.332654 AATTGCAGCCCGACGGTTC 61.333 57.895 13.94 4.12 0.00 3.62
4774 13854 0.729140 GAAACAATTGCAGCCCGACG 60.729 55.000 5.05 0.00 0.00 5.12
4775 13855 0.388520 GGAAACAATTGCAGCCCGAC 60.389 55.000 5.05 0.00 0.00 4.79
4777 13857 0.318120 AAGGAAACAATTGCAGCCCG 59.682 50.000 5.05 0.00 0.00 6.13
4778 13858 1.620323 AGAAGGAAACAATTGCAGCCC 59.380 47.619 5.05 2.09 0.00 5.19
4779 13859 3.391506 AAGAAGGAAACAATTGCAGCC 57.608 42.857 5.05 4.16 0.00 4.85
4780 13860 6.215845 TCTTTAAGAAGGAAACAATTGCAGC 58.784 36.000 5.05 0.00 33.56 5.25
4799 13879 8.725148 GCTCTGATTGAGAAAGAAACATCTTTA 58.275 33.333 3.96 0.00 45.39 1.85
4803 13883 6.492007 TGCTCTGATTGAGAAAGAAACATC 57.508 37.500 0.00 0.00 45.39 3.06
4804 13884 5.106237 GCTGCTCTGATTGAGAAAGAAACAT 60.106 40.000 0.00 0.00 45.39 2.71
4805 13885 4.214971 GCTGCTCTGATTGAGAAAGAAACA 59.785 41.667 0.00 0.00 45.39 2.83
4806 13886 4.455190 AGCTGCTCTGATTGAGAAAGAAAC 59.545 41.667 0.00 0.00 45.39 2.78
4807 13887 4.454847 CAGCTGCTCTGATTGAGAAAGAAA 59.545 41.667 0.00 0.00 45.72 2.52
4809 13889 3.597255 CAGCTGCTCTGATTGAGAAAGA 58.403 45.455 0.00 0.00 45.72 2.52
4810 13890 2.678836 CCAGCTGCTCTGATTGAGAAAG 59.321 50.000 8.66 0.00 45.72 2.62
4811 13891 2.708051 CCAGCTGCTCTGATTGAGAAA 58.292 47.619 8.66 0.00 45.72 2.52
4812 13892 1.678123 GCCAGCTGCTCTGATTGAGAA 60.678 52.381 8.66 0.00 45.72 2.87
4813 13893 0.107800 GCCAGCTGCTCTGATTGAGA 60.108 55.000 8.66 0.00 45.72 3.27
4814 13894 2.395651 GCCAGCTGCTCTGATTGAG 58.604 57.895 8.66 0.00 45.72 3.02
4815 13895 4.631773 GCCAGCTGCTCTGATTGA 57.368 55.556 8.66 0.00 45.72 2.57
4824 13904 1.744741 GACTCCAGAAGCCAGCTGC 60.745 63.158 8.66 3.91 41.71 5.25
4825 13905 1.447489 CGACTCCAGAAGCCAGCTG 60.447 63.158 6.78 6.78 0.00 4.24
4826 13906 2.977178 CGACTCCAGAAGCCAGCT 59.023 61.111 0.00 0.00 0.00 4.24
4827 13907 2.817396 GCGACTCCAGAAGCCAGC 60.817 66.667 0.00 0.00 0.00 4.85
4828 13908 1.447489 CAGCGACTCCAGAAGCCAG 60.447 63.158 0.00 0.00 0.00 4.85
4830 13910 2.125350 CCAGCGACTCCAGAAGCC 60.125 66.667 0.00 0.00 0.00 4.35
4831 13911 1.153667 CTCCAGCGACTCCAGAAGC 60.154 63.158 0.00 0.00 0.00 3.86
4832 13912 0.108898 CACTCCAGCGACTCCAGAAG 60.109 60.000 0.00 0.00 0.00 2.85
4833 13913 0.827925 ACACTCCAGCGACTCCAGAA 60.828 55.000 0.00 0.00 0.00 3.02
4835 13915 0.668706 CAACACTCCAGCGACTCCAG 60.669 60.000 0.00 0.00 0.00 3.86
4836 13916 1.367471 CAACACTCCAGCGACTCCA 59.633 57.895 0.00 0.00 0.00 3.86
4837 13917 2.029844 GCAACACTCCAGCGACTCC 61.030 63.158 0.00 0.00 0.00 3.85
4838 13918 3.555428 GCAACACTCCAGCGACTC 58.445 61.111 0.00 0.00 0.00 3.36
4843 13923 2.375766 CGAGTCGCAACACTCCAGC 61.376 63.158 0.00 0.00 39.90 4.85
4844 13924 0.597637 AACGAGTCGCAACACTCCAG 60.598 55.000 13.59 0.00 39.90 3.86
4846 13926 0.874607 ACAACGAGTCGCAACACTCC 60.875 55.000 13.59 0.00 39.90 3.85
4848 13928 2.212869 TTACAACGAGTCGCAACACT 57.787 45.000 13.59 0.00 0.00 3.55
4849 13929 2.473609 TGATTACAACGAGTCGCAACAC 59.526 45.455 13.59 0.00 0.00 3.32
4850 13930 2.729360 CTGATTACAACGAGTCGCAACA 59.271 45.455 13.59 3.06 0.00 3.33
4851 13931 2.472397 GCTGATTACAACGAGTCGCAAC 60.472 50.000 13.59 0.00 0.00 4.17
4852 13932 1.724623 GCTGATTACAACGAGTCGCAA 59.275 47.619 13.59 2.13 0.00 4.85
4854 13934 1.321743 CAGCTGATTACAACGAGTCGC 59.678 52.381 13.59 0.00 0.00 5.19
4855 13935 2.596452 ACAGCTGATTACAACGAGTCG 58.404 47.619 23.35 11.85 0.00 4.18
4856 13936 5.061064 CAGTTACAGCTGATTACAACGAGTC 59.939 44.000 23.35 0.00 38.70 3.36
4857 13937 4.923871 CAGTTACAGCTGATTACAACGAGT 59.076 41.667 23.35 0.00 38.70 4.18
4858 13938 5.161358 TCAGTTACAGCTGATTACAACGAG 58.839 41.667 23.35 12.72 40.23 4.18
4859 13939 5.128992 TCAGTTACAGCTGATTACAACGA 57.871 39.130 23.35 13.04 40.23 3.85
4869 13949 1.089920 GGCCACATCAGTTACAGCTG 58.910 55.000 13.48 13.48 37.81 4.24
4870 13950 0.987294 AGGCCACATCAGTTACAGCT 59.013 50.000 5.01 0.00 0.00 4.24
4874 13954 5.126067 ACATTATGAGGCCACATCAGTTAC 58.874 41.667 19.68 0.00 0.00 2.50
4876 13956 4.240881 ACATTATGAGGCCACATCAGTT 57.759 40.909 19.68 0.00 0.00 3.16
4878 13958 3.567164 GGAACATTATGAGGCCACATCAG 59.433 47.826 19.68 12.48 0.00 2.90
4879 13959 3.202818 AGGAACATTATGAGGCCACATCA 59.797 43.478 19.68 9.36 0.00 3.07
4880 13960 3.817647 GAGGAACATTATGAGGCCACATC 59.182 47.826 19.68 4.79 0.00 3.06
4884 13964 3.718434 AGATGAGGAACATTATGAGGCCA 59.282 43.478 5.01 0.00 39.56 5.36
4885 13965 4.041444 AGAGATGAGGAACATTATGAGGCC 59.959 45.833 0.00 0.00 39.56 5.19
4918 13998 9.925545 TGCAGAATTATCCATTAAGCCATATAT 57.074 29.630 0.00 0.00 0.00 0.86
4920 14000 8.692710 CATGCAGAATTATCCATTAAGCCATAT 58.307 33.333 0.00 0.00 0.00 1.78
4922 14002 6.070995 CCATGCAGAATTATCCATTAAGCCAT 60.071 38.462 0.00 0.00 0.00 4.40
4923 14003 5.244402 CCATGCAGAATTATCCATTAAGCCA 59.756 40.000 0.00 0.00 0.00 4.75
4924 14004 5.717119 CCATGCAGAATTATCCATTAAGCC 58.283 41.667 0.00 0.00 0.00 4.35
4925 14005 5.166398 GCCATGCAGAATTATCCATTAAGC 58.834 41.667 0.00 0.00 0.00 3.09
4926 14006 5.244402 TGGCCATGCAGAATTATCCATTAAG 59.756 40.000 0.00 0.00 0.00 1.85
4927 14007 5.010922 GTGGCCATGCAGAATTATCCATTAA 59.989 40.000 9.72 0.00 0.00 1.40
4931 14011 2.309613 GTGGCCATGCAGAATTATCCA 58.690 47.619 9.72 0.00 0.00 3.41
4932 14012 1.615392 GGTGGCCATGCAGAATTATCC 59.385 52.381 9.72 0.00 0.00 2.59
4933 14013 2.035066 GTGGTGGCCATGCAGAATTATC 59.965 50.000 9.72 0.00 35.28 1.75
4934 14014 2.034124 GTGGTGGCCATGCAGAATTAT 58.966 47.619 9.72 0.00 35.28 1.28
4935 14015 1.272369 TGTGGTGGCCATGCAGAATTA 60.272 47.619 9.72 0.00 35.28 1.40
4936 14016 0.542467 TGTGGTGGCCATGCAGAATT 60.542 50.000 9.72 0.00 35.28 2.17
4937 14017 0.324923 ATGTGGTGGCCATGCAGAAT 60.325 50.000 9.72 0.00 35.28 2.40
4939 14019 0.330941 TAATGTGGTGGCCATGCAGA 59.669 50.000 9.72 0.00 35.28 4.26
4940 14020 0.457035 GTAATGTGGTGGCCATGCAG 59.543 55.000 9.72 0.00 35.28 4.41
4942 14022 0.684153 AGGTAATGTGGTGGCCATGC 60.684 55.000 9.72 2.53 35.28 4.06
4943 14023 1.105457 CAGGTAATGTGGTGGCCATG 58.895 55.000 9.72 0.00 35.28 3.66
4946 14026 1.064758 TCATCAGGTAATGTGGTGGCC 60.065 52.381 0.00 0.00 0.00 5.36
4947 14027 2.292267 CTCATCAGGTAATGTGGTGGC 58.708 52.381 0.00 0.00 0.00 5.01
4948 14028 2.292267 GCTCATCAGGTAATGTGGTGG 58.708 52.381 0.00 0.00 0.00 4.61
4949 14029 2.679837 GTGCTCATCAGGTAATGTGGTG 59.320 50.000 0.00 0.00 0.00 4.17
4951 14031 2.941064 CAGTGCTCATCAGGTAATGTGG 59.059 50.000 0.00 0.00 0.00 4.17
4952 14032 2.941064 CCAGTGCTCATCAGGTAATGTG 59.059 50.000 0.00 0.00 0.00 3.21
4953 14033 2.092753 CCCAGTGCTCATCAGGTAATGT 60.093 50.000 0.00 0.00 0.00 2.71
4957 14037 1.278985 CAACCCAGTGCTCATCAGGTA 59.721 52.381 0.00 0.00 0.00 3.08
4958 14038 0.037303 CAACCCAGTGCTCATCAGGT 59.963 55.000 0.00 0.00 0.00 4.00
4960 14040 2.189594 TTCAACCCAGTGCTCATCAG 57.810 50.000 0.00 0.00 0.00 2.90
4961 14041 2.885135 ATTCAACCCAGTGCTCATCA 57.115 45.000 0.00 0.00 0.00 3.07
4962 14042 4.702131 ACTAAATTCAACCCAGTGCTCATC 59.298 41.667 0.00 0.00 0.00 2.92
4964 14044 4.098914 ACTAAATTCAACCCAGTGCTCA 57.901 40.909 0.00 0.00 0.00 4.26
4965 14045 5.453567 AAACTAAATTCAACCCAGTGCTC 57.546 39.130 0.00 0.00 0.00 4.26
4967 14047 6.977213 TCTAAAACTAAATTCAACCCAGTGC 58.023 36.000 0.00 0.00 0.00 4.40
4968 14048 8.076178 CACTCTAAAACTAAATTCAACCCAGTG 58.924 37.037 0.00 0.00 0.00 3.66
4969 14049 7.996644 TCACTCTAAAACTAAATTCAACCCAGT 59.003 33.333 0.00 0.00 0.00 4.00
4970 14050 8.391075 TCACTCTAAAACTAAATTCAACCCAG 57.609 34.615 0.00 0.00 0.00 4.45
4971 14051 7.996644 ACTCACTCTAAAACTAAATTCAACCCA 59.003 33.333 0.00 0.00 0.00 4.51
4972 14052 8.290325 CACTCACTCTAAAACTAAATTCAACCC 58.710 37.037 0.00 0.00 0.00 4.11
4973 14053 9.052759 TCACTCACTCTAAAACTAAATTCAACC 57.947 33.333 0.00 0.00 0.00 3.77
4974 14054 9.865484 GTCACTCACTCTAAAACTAAATTCAAC 57.135 33.333 0.00 0.00 0.00 3.18
4975 14055 9.607988 TGTCACTCACTCTAAAACTAAATTCAA 57.392 29.630 0.00 0.00 0.00 2.69
4976 14056 9.042008 GTGTCACTCACTCTAAAACTAAATTCA 57.958 33.333 0.00 0.00 43.13 2.57
4977 14057 8.215132 CGTGTCACTCACTCTAAAACTAAATTC 58.785 37.037 0.65 0.00 44.16 2.17
4979 14059 6.645415 CCGTGTCACTCACTCTAAAACTAAAT 59.355 38.462 0.65 0.00 44.16 1.40
4980 14060 5.981315 CCGTGTCACTCACTCTAAAACTAAA 59.019 40.000 0.65 0.00 44.16 1.85
4981 14061 5.300034 TCCGTGTCACTCACTCTAAAACTAA 59.700 40.000 0.65 0.00 44.16 2.24
4983 14063 3.635373 TCCGTGTCACTCACTCTAAAACT 59.365 43.478 0.65 0.00 44.16 2.66
4984 14064 3.973657 TCCGTGTCACTCACTCTAAAAC 58.026 45.455 0.65 0.00 44.16 2.43
4986 14066 3.382227 TGTTCCGTGTCACTCACTCTAAA 59.618 43.478 0.65 0.00 44.16 1.85
4987 14067 2.953648 TGTTCCGTGTCACTCACTCTAA 59.046 45.455 0.65 0.00 44.16 2.10
4990 14070 2.128035 CTTGTTCCGTGTCACTCACTC 58.872 52.381 0.65 0.00 44.16 3.51
4991 14071 1.480954 ACTTGTTCCGTGTCACTCACT 59.519 47.619 0.65 0.00 44.16 3.41
4992 14072 1.935933 ACTTGTTCCGTGTCACTCAC 58.064 50.000 0.65 0.00 43.03 3.51
4993 14073 3.572682 AGATACTTGTTCCGTGTCACTCA 59.427 43.478 0.65 0.00 0.00 3.41
4994 14074 4.167268 GAGATACTTGTTCCGTGTCACTC 58.833 47.826 0.65 0.00 0.00 3.51
4996 14076 3.251571 GGAGATACTTGTTCCGTGTCAC 58.748 50.000 0.00 0.00 0.00 3.67
4999 14079 4.020573 TCAATGGAGATACTTGTTCCGTGT 60.021 41.667 0.00 0.00 33.60 4.49
5002 14082 3.871594 GGTCAATGGAGATACTTGTTCCG 59.128 47.826 0.00 0.00 33.60 4.30
5003 14083 3.871594 CGGTCAATGGAGATACTTGTTCC 59.128 47.826 0.00 0.00 0.00 3.62
5004 14084 3.309954 GCGGTCAATGGAGATACTTGTTC 59.690 47.826 0.00 0.00 0.00 3.18
5006 14086 2.501723 AGCGGTCAATGGAGATACTTGT 59.498 45.455 0.00 0.00 0.00 3.16
5007 14087 3.126831 GAGCGGTCAATGGAGATACTTG 58.873 50.000 10.30 0.00 0.00 3.16
5009 14089 2.388735 TGAGCGGTCAATGGAGATACT 58.611 47.619 16.20 0.00 0.00 2.12
5010 14090 2.866762 GTTGAGCGGTCAATGGAGATAC 59.133 50.000 30.41 13.89 44.58 2.24
5011 14091 2.766263 AGTTGAGCGGTCAATGGAGATA 59.234 45.455 30.41 5.27 44.58 1.98
5013 14093 0.976641 AGTTGAGCGGTCAATGGAGA 59.023 50.000 30.41 6.83 44.58 3.71
5014 14094 1.066573 AGAGTTGAGCGGTCAATGGAG 60.067 52.381 30.41 0.00 44.58 3.86
5016 14096 1.066573 AGAGAGTTGAGCGGTCAATGG 60.067 52.381 30.41 0.00 44.58 3.16
5018 14098 1.674221 GCAGAGAGTTGAGCGGTCAAT 60.674 52.381 30.41 19.62 44.58 2.57
5019 14099 0.319900 GCAGAGAGTTGAGCGGTCAA 60.320 55.000 25.16 25.16 40.55 3.18
5022 14102 1.882989 GAGGCAGAGAGTTGAGCGGT 61.883 60.000 0.00 0.00 0.00 5.68
5023 14103 1.153667 GAGGCAGAGAGTTGAGCGG 60.154 63.158 0.00 0.00 0.00 5.52
5025 14105 2.289320 TGAAAGAGGCAGAGAGTTGAGC 60.289 50.000 0.00 0.00 0.00 4.26
5027 14107 2.968574 ACTGAAAGAGGCAGAGAGTTGA 59.031 45.455 0.00 0.00 37.43 3.18
5028 14108 3.399440 ACTGAAAGAGGCAGAGAGTTG 57.601 47.619 0.00 0.00 37.43 3.16
5029 14109 5.071115 AGTTTACTGAAAGAGGCAGAGAGTT 59.929 40.000 0.00 0.00 37.43 3.01
5031 14111 5.146010 AGTTTACTGAAAGAGGCAGAGAG 57.854 43.478 0.00 0.00 37.43 3.20
5033 14113 4.249661 GGAGTTTACTGAAAGAGGCAGAG 58.750 47.826 0.00 0.00 37.43 3.35
5034 14114 3.646162 TGGAGTTTACTGAAAGAGGCAGA 59.354 43.478 0.00 0.00 37.43 4.26
5035 14115 3.999663 CTGGAGTTTACTGAAAGAGGCAG 59.000 47.826 0.00 0.00 37.43 4.85
5036 14116 3.391296 ACTGGAGTTTACTGAAAGAGGCA 59.609 43.478 0.00 0.00 37.43 4.75
5037 14117 4.009370 ACTGGAGTTTACTGAAAGAGGC 57.991 45.455 0.00 0.00 37.43 4.70
5038 14118 6.591834 CACATACTGGAGTTTACTGAAAGAGG 59.408 42.308 0.00 0.00 37.43 3.69
5039 14119 6.591834 CCACATACTGGAGTTTACTGAAAGAG 59.408 42.308 0.00 0.00 43.95 2.85
5040 14120 6.464222 CCACATACTGGAGTTTACTGAAAGA 58.536 40.000 0.00 0.00 43.95 2.52
5042 14122 5.001232 GCCACATACTGGAGTTTACTGAAA 58.999 41.667 0.00 0.00 43.95 2.69
5044 14124 3.580895 TGCCACATACTGGAGTTTACTGA 59.419 43.478 0.00 0.00 43.95 3.41
5046 14126 3.939066 GTGCCACATACTGGAGTTTACT 58.061 45.455 0.00 0.00 43.95 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.