Multiple sequence alignment - TraesCS1A01G057900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G057900 chr1A 100.000 3637 0 0 1 3637 38369580 38365944 0.000000e+00 6717.0
1 TraesCS1A01G057900 chr1A 94.165 617 25 8 3021 3637 516551499 516552104 0.000000e+00 929.0
2 TraesCS1A01G057900 chr1A 94.574 258 3 1 3022 3268 38361631 38361374 4.400000e-104 388.0
3 TraesCS1A01G057900 chr1A 93.130 262 6 8 3022 3271 516556394 516556655 1.230000e-99 374.0
4 TraesCS1A01G057900 chr1A 93.627 204 13 0 1 204 474425821 474425618 4.560000e-79 305.0
5 TraesCS1A01G057900 chr1A 92.537 67 5 0 219 285 38369294 38369228 2.990000e-16 97.1
6 TraesCS1A01G057900 chr1A 92.537 67 5 0 287 353 38369362 38369296 2.990000e-16 97.1
7 TraesCS1A01G057900 chr1D 92.107 2572 122 40 413 2969 38659646 38657141 0.000000e+00 3550.0
8 TraesCS1A01G057900 chr1D 91.463 82 6 1 205 285 38665517 38665436 1.070000e-20 111.0
9 TraesCS1A01G057900 chr1D 81.538 130 8 10 293 421 38665496 38665382 3.870000e-15 93.5
10 TraesCS1A01G057900 chr1D 86.905 84 7 3 2880 2960 38611663 38611581 1.390000e-14 91.6
11 TraesCS1A01G057900 chr1B 91.597 2166 134 29 612 2753 58546756 58544615 0.000000e+00 2948.0
12 TraesCS1A01G057900 chr1B 88.217 628 50 14 3022 3635 262758070 262758687 0.000000e+00 728.0
13 TraesCS1A01G057900 chr1B 88.057 628 51 14 3022 3635 262715932 262716549 0.000000e+00 723.0
14 TraesCS1A01G057900 chr1B 96.104 231 5 2 2742 2969 58542269 58542040 1.230000e-99 374.0
15 TraesCS1A01G057900 chr1B 94.915 59 2 1 2911 2969 58536750 58536693 1.390000e-14 91.6
16 TraesCS1A01G057900 chr7A 97.078 616 18 0 3022 3637 91505172 91504557 0.000000e+00 1038.0
17 TraesCS1A01G057900 chr7A 93.411 258 6 7 3022 3268 91500051 91499794 4.440000e-99 372.0
18 TraesCS1A01G057900 chr3A 95.056 627 20 1 3022 3637 41236314 41235688 0.000000e+00 976.0
19 TraesCS1A01G057900 chr6B 92.382 617 36 6 3022 3637 63654752 63655358 0.000000e+00 869.0
20 TraesCS1A01G057900 chr6B 91.172 623 37 7 3022 3636 63753236 63753848 0.000000e+00 830.0
21 TraesCS1A01G057900 chr6B 89.157 249 16 6 3022 3269 63659683 63659921 2.120000e-77 300.0
22 TraesCS1A01G057900 chr6B 88.259 247 18 6 3022 3268 63766791 63767026 5.940000e-73 285.0
23 TraesCS1A01G057900 chr7B 91.040 625 24 3 3045 3637 678742478 678743102 0.000000e+00 815.0
24 TraesCS1A01G057900 chr7B 89.268 205 20 2 1 204 79392504 79392707 4.660000e-64 255.0
25 TraesCS1A01G057900 chr7B 86.869 198 25 1 1 197 73482019 73482216 1.700000e-53 220.0
26 TraesCS1A01G057900 chr2D 90.630 619 45 11 3021 3637 2055219 2054612 0.000000e+00 809.0
27 TraesCS1A01G057900 chr3B 89.776 626 39 10 3022 3636 25174433 25175044 0.000000e+00 778.0
28 TraesCS1A01G057900 chr6A 86.829 205 26 1 1 204 69205325 69205529 1.020000e-55 228.0
29 TraesCS1A01G057900 chr6A 97.561 41 0 1 2961 3001 184375509 184375548 6.520000e-08 69.4
30 TraesCS1A01G057900 chrUn 86.765 204 26 1 1 203 220722915 220723118 3.650000e-55 226.0
31 TraesCS1A01G057900 chrUn 86.765 204 26 1 1 203 220733969 220734172 3.650000e-55 226.0
32 TraesCS1A01G057900 chrUn 86.765 204 26 1 1 203 323934104 323934307 3.650000e-55 226.0
33 TraesCS1A01G057900 chr4B 86.765 204 26 1 1 203 15686596 15686393 3.650000e-55 226.0
34 TraesCS1A01G057900 chr4B 86.275 204 27 1 1 203 15702563 15702360 1.700000e-53 220.0
35 TraesCS1A01G057900 chr4A 95.122 41 1 1 2961 3001 558660134 558660095 3.030000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G057900 chr1A 38365944 38369580 3636 True 2303.733333 6717 95.024667 1 3637 3 chr1A.!!$R3 3636
1 TraesCS1A01G057900 chr1A 516551499 516552104 605 False 929.000000 929 94.165000 3021 3637 1 chr1A.!!$F1 616
2 TraesCS1A01G057900 chr1D 38657141 38659646 2505 True 3550.000000 3550 92.107000 413 2969 1 chr1D.!!$R2 2556
3 TraesCS1A01G057900 chr1B 58542040 58546756 4716 True 1661.000000 2948 93.850500 612 2969 2 chr1B.!!$R2 2357
4 TraesCS1A01G057900 chr1B 262758070 262758687 617 False 728.000000 728 88.217000 3022 3635 1 chr1B.!!$F2 613
5 TraesCS1A01G057900 chr1B 262715932 262716549 617 False 723.000000 723 88.057000 3022 3635 1 chr1B.!!$F1 613
6 TraesCS1A01G057900 chr7A 91504557 91505172 615 True 1038.000000 1038 97.078000 3022 3637 1 chr7A.!!$R2 615
7 TraesCS1A01G057900 chr3A 41235688 41236314 626 True 976.000000 976 95.056000 3022 3637 1 chr3A.!!$R1 615
8 TraesCS1A01G057900 chr6B 63654752 63655358 606 False 869.000000 869 92.382000 3022 3637 1 chr6B.!!$F1 615
9 TraesCS1A01G057900 chr6B 63753236 63753848 612 False 830.000000 830 91.172000 3022 3636 1 chr6B.!!$F3 614
10 TraesCS1A01G057900 chr7B 678742478 678743102 624 False 815.000000 815 91.040000 3045 3637 1 chr7B.!!$F3 592
11 TraesCS1A01G057900 chr2D 2054612 2055219 607 True 809.000000 809 90.630000 3021 3637 1 chr2D.!!$R1 616
12 TraesCS1A01G057900 chr3B 25174433 25175044 611 False 778.000000 778 89.776000 3022 3636 1 chr3B.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 0.038526 CGGGTGTCGTCTGCTAAACT 60.039 55.000 0.00 0.0 0.0 2.66 F
670 673 0.109723 GTCAGGGGTTAACAGGCACA 59.890 55.000 8.10 0.0 0.0 4.57 F
953 971 1.004610 CGACATAAGGTTGCGCATCAG 60.005 52.381 12.75 0.0 0.0 2.90 F
1706 1729 0.541863 ACAAGGAGGTAAGGGATGCG 59.458 55.000 0.00 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1416 0.108041 CACCTGCATTCATTTGCCCC 60.108 55.000 0.0 0.0 42.06 5.80 R
1706 1729 0.871722 TGTCCACGCTGTTTATGCAC 59.128 50.000 0.0 0.0 0.00 4.57 R
2447 2480 1.001815 GCTCTCTTCCTCTCCGAATCG 60.002 57.143 0.0 0.0 0.00 3.34 R
3029 5422 0.179018 AGGCAAGACGTTTCCAGCTT 60.179 50.000 0.0 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.933861 AAGTCTTCAACTTGGGTCACT 57.066 42.857 0.00 0.00 46.61 3.41
25 26 3.199880 AGTCTTCAACTTGGGTCACTG 57.800 47.619 0.00 0.00 33.03 3.66
26 27 2.771943 AGTCTTCAACTTGGGTCACTGA 59.228 45.455 0.00 0.00 33.03 3.41
27 28 2.872858 GTCTTCAACTTGGGTCACTGAC 59.127 50.000 0.00 0.00 0.00 3.51
28 29 2.503765 TCTTCAACTTGGGTCACTGACA 59.496 45.455 11.34 0.00 33.68 3.58
29 30 2.620251 TCAACTTGGGTCACTGACAG 57.380 50.000 11.34 0.00 33.68 3.51
30 31 1.837439 TCAACTTGGGTCACTGACAGT 59.163 47.619 11.34 1.07 33.68 3.55
32 33 0.469917 ACTTGGGTCACTGACAGTGG 59.530 55.000 30.39 17.87 45.94 4.00
33 34 0.758734 CTTGGGTCACTGACAGTGGA 59.241 55.000 30.39 17.04 45.94 4.02
34 35 0.468226 TTGGGTCACTGACAGTGGAC 59.532 55.000 30.39 24.88 45.94 4.02
35 36 1.371558 GGGTCACTGACAGTGGACC 59.628 63.158 29.93 29.93 45.94 4.46
36 37 1.371558 GGTCACTGACAGTGGACCC 59.628 63.158 30.39 23.52 45.94 4.46
37 38 1.407656 GGTCACTGACAGTGGACCCA 61.408 60.000 30.39 12.12 45.94 4.51
38 39 0.249911 GTCACTGACAGTGGACCCAC 60.250 60.000 30.39 19.09 45.94 4.61
46 47 4.722700 GTGGACCCACGCCATGCT 62.723 66.667 3.13 0.00 37.81 3.79
47 48 4.720902 TGGACCCACGCCATGCTG 62.721 66.667 0.00 0.00 0.00 4.41
48 49 4.722700 GGACCCACGCCATGCTGT 62.723 66.667 0.00 0.00 0.00 4.40
49 50 3.127533 GACCCACGCCATGCTGTC 61.128 66.667 0.00 0.00 0.00 3.51
50 51 3.899981 GACCCACGCCATGCTGTCA 62.900 63.158 0.00 0.00 31.94 3.58
51 52 3.434319 CCCACGCCATGCTGTCAC 61.434 66.667 0.00 0.00 0.00 3.67
52 53 3.792047 CCACGCCATGCTGTCACG 61.792 66.667 0.00 0.00 0.00 4.35
53 54 4.450122 CACGCCATGCTGTCACGC 62.450 66.667 0.00 0.00 0.00 5.34
56 57 3.807538 GCCATGCTGTCACGCCTG 61.808 66.667 0.00 0.00 0.00 4.85
57 58 2.046988 CCATGCTGTCACGCCTGA 60.047 61.111 0.00 0.00 0.00 3.86
58 59 1.450848 CCATGCTGTCACGCCTGAT 60.451 57.895 0.00 0.00 0.00 2.90
59 60 1.712018 CCATGCTGTCACGCCTGATG 61.712 60.000 0.00 0.00 0.00 3.07
60 61 0.741927 CATGCTGTCACGCCTGATGA 60.742 55.000 0.00 0.00 0.00 2.92
61 62 0.461516 ATGCTGTCACGCCTGATGAG 60.462 55.000 0.00 0.00 0.00 2.90
62 63 2.459442 GCTGTCACGCCTGATGAGC 61.459 63.158 4.66 4.66 31.25 4.26
63 64 1.812922 CTGTCACGCCTGATGAGCC 60.813 63.158 0.00 0.00 0.00 4.70
64 65 2.512515 GTCACGCCTGATGAGCCC 60.513 66.667 0.00 0.00 0.00 5.19
65 66 3.785859 TCACGCCTGATGAGCCCC 61.786 66.667 0.00 0.00 0.00 5.80
69 70 4.864334 GCCTGATGAGCCCCGTGG 62.864 72.222 0.00 0.00 0.00 4.94
79 80 4.449391 CCCCGTGGGCGTATTTAG 57.551 61.111 0.00 0.00 35.35 1.85
80 81 1.523524 CCCCGTGGGCGTATTTAGT 59.476 57.895 0.00 0.00 35.35 2.24
81 82 0.107557 CCCCGTGGGCGTATTTAGTT 60.108 55.000 0.00 0.00 35.35 2.24
82 83 1.011333 CCCGTGGGCGTATTTAGTTG 58.989 55.000 0.00 0.00 36.15 3.16
83 84 0.375803 CCGTGGGCGTATTTAGTTGC 59.624 55.000 0.00 0.00 36.15 4.17
84 85 1.080298 CGTGGGCGTATTTAGTTGCA 58.920 50.000 0.00 0.00 0.00 4.08
85 86 1.668751 CGTGGGCGTATTTAGTTGCAT 59.331 47.619 0.00 0.00 0.00 3.96
86 87 2.096819 CGTGGGCGTATTTAGTTGCATT 59.903 45.455 0.00 0.00 0.00 3.56
87 88 3.426963 CGTGGGCGTATTTAGTTGCATTT 60.427 43.478 0.00 0.00 0.00 2.32
88 89 4.490743 GTGGGCGTATTTAGTTGCATTTT 58.509 39.130 0.00 0.00 0.00 1.82
89 90 4.326009 GTGGGCGTATTTAGTTGCATTTTG 59.674 41.667 0.00 0.00 0.00 2.44
90 91 3.305897 GGGCGTATTTAGTTGCATTTTGC 59.694 43.478 0.00 0.00 45.29 3.68
101 102 2.785879 GCATTTTGCACCGTATTTGC 57.214 45.000 0.00 0.00 44.26 3.68
107 108 1.819928 TGCACCGTATTTGCATGTCT 58.180 45.000 0.00 0.00 45.06 3.41
108 109 2.979240 TGCACCGTATTTGCATGTCTA 58.021 42.857 0.00 0.00 45.06 2.59
109 110 3.339141 TGCACCGTATTTGCATGTCTAA 58.661 40.909 0.00 0.00 45.06 2.10
110 111 3.373748 TGCACCGTATTTGCATGTCTAAG 59.626 43.478 0.00 0.00 45.06 2.18
111 112 3.788797 GCACCGTATTTGCATGTCTAAGC 60.789 47.826 0.00 0.00 39.93 3.09
112 113 2.943033 ACCGTATTTGCATGTCTAAGCC 59.057 45.455 0.00 0.00 0.00 4.35
113 114 2.942376 CCGTATTTGCATGTCTAAGCCA 59.058 45.455 0.00 0.00 0.00 4.75
114 115 3.376859 CCGTATTTGCATGTCTAAGCCAA 59.623 43.478 0.00 0.00 0.00 4.52
115 116 4.496341 CCGTATTTGCATGTCTAAGCCAAG 60.496 45.833 0.00 0.00 0.00 3.61
116 117 4.094887 CGTATTTGCATGTCTAAGCCAAGT 59.905 41.667 0.00 0.00 0.00 3.16
117 118 5.391950 CGTATTTGCATGTCTAAGCCAAGTT 60.392 40.000 0.00 0.00 0.00 2.66
118 119 3.921119 TTGCATGTCTAAGCCAAGTTG 57.079 42.857 0.00 0.00 0.00 3.16
119 120 1.541147 TGCATGTCTAAGCCAAGTTGC 59.459 47.619 0.00 0.00 0.00 4.17
120 121 1.815003 GCATGTCTAAGCCAAGTTGCT 59.185 47.619 0.00 0.00 45.43 3.91
121 122 2.415090 GCATGTCTAAGCCAAGTTGCTG 60.415 50.000 0.00 0.00 41.80 4.41
122 123 1.238439 TGTCTAAGCCAAGTTGCTGC 58.762 50.000 0.00 0.00 41.80 5.25
123 124 1.238439 GTCTAAGCCAAGTTGCTGCA 58.762 50.000 0.00 0.00 41.80 4.41
124 125 1.068954 GTCTAAGCCAAGTTGCTGCAC 60.069 52.381 0.00 0.00 41.80 4.57
125 126 0.242017 CTAAGCCAAGTTGCTGCACC 59.758 55.000 0.00 0.00 41.80 5.01
126 127 1.514678 TAAGCCAAGTTGCTGCACCG 61.515 55.000 0.00 0.00 41.80 4.94
127 128 4.347453 GCCAAGTTGCTGCACCGG 62.347 66.667 0.00 0.00 0.00 5.28
128 129 2.906897 CCAAGTTGCTGCACCGGT 60.907 61.111 0.00 0.00 0.00 5.28
129 130 2.489275 CCAAGTTGCTGCACCGGTT 61.489 57.895 2.97 0.00 0.00 4.44
130 131 1.008538 CAAGTTGCTGCACCGGTTC 60.009 57.895 2.97 0.00 0.00 3.62
131 132 1.453015 AAGTTGCTGCACCGGTTCA 60.453 52.632 2.97 5.20 0.00 3.18
132 133 1.034838 AAGTTGCTGCACCGGTTCAA 61.035 50.000 2.97 4.15 0.00 2.69
133 134 0.823356 AGTTGCTGCACCGGTTCAAT 60.823 50.000 2.97 0.00 0.00 2.57
134 135 0.664166 GTTGCTGCACCGGTTCAATG 60.664 55.000 2.97 0.00 0.00 2.82
135 136 1.106351 TTGCTGCACCGGTTCAATGT 61.106 50.000 2.97 0.00 0.00 2.71
136 137 0.250510 TGCTGCACCGGTTCAATGTA 60.251 50.000 2.97 0.00 0.00 2.29
137 138 0.168128 GCTGCACCGGTTCAATGTAC 59.832 55.000 2.97 0.00 0.00 2.90
138 139 1.808411 CTGCACCGGTTCAATGTACT 58.192 50.000 2.97 0.00 0.00 2.73
139 140 2.151202 CTGCACCGGTTCAATGTACTT 58.849 47.619 2.97 0.00 0.00 2.24
140 141 2.147958 TGCACCGGTTCAATGTACTTC 58.852 47.619 2.97 0.00 0.00 3.01
141 142 1.127951 GCACCGGTTCAATGTACTTCG 59.872 52.381 2.97 0.00 0.00 3.79
142 143 1.127951 CACCGGTTCAATGTACTTCGC 59.872 52.381 2.97 0.00 0.00 4.70
143 144 1.270412 ACCGGTTCAATGTACTTCGCA 60.270 47.619 0.00 0.00 0.00 5.10
144 145 1.801771 CCGGTTCAATGTACTTCGCAA 59.198 47.619 0.00 0.00 0.00 4.85
145 146 2.159707 CCGGTTCAATGTACTTCGCAAG 60.160 50.000 0.00 0.00 0.00 4.01
146 147 2.478894 CGGTTCAATGTACTTCGCAAGT 59.521 45.455 6.74 6.74 45.40 3.16
147 148 3.059188 CGGTTCAATGTACTTCGCAAGTT 60.059 43.478 6.82 0.00 42.81 2.66
148 149 4.553938 CGGTTCAATGTACTTCGCAAGTTT 60.554 41.667 6.82 0.00 42.81 2.66
149 150 5.278604 GGTTCAATGTACTTCGCAAGTTTT 58.721 37.500 6.82 0.00 42.81 2.43
150 151 6.432107 GGTTCAATGTACTTCGCAAGTTTTA 58.568 36.000 6.82 0.00 42.81 1.52
151 152 6.577427 GGTTCAATGTACTTCGCAAGTTTTAG 59.423 38.462 6.82 0.00 42.81 1.85
152 153 5.685841 TCAATGTACTTCGCAAGTTTTAGC 58.314 37.500 6.82 0.00 42.81 3.09
153 154 5.237561 TCAATGTACTTCGCAAGTTTTAGCA 59.762 36.000 6.82 1.83 42.81 3.49
154 155 4.461992 TGTACTTCGCAAGTTTTAGCAC 57.538 40.909 6.82 0.59 42.81 4.40
155 156 4.124238 TGTACTTCGCAAGTTTTAGCACT 58.876 39.130 6.82 0.00 42.81 4.40
156 157 5.291178 TGTACTTCGCAAGTTTTAGCACTA 58.709 37.500 6.82 0.00 42.81 2.74
157 158 5.754406 TGTACTTCGCAAGTTTTAGCACTAA 59.246 36.000 6.82 0.00 42.81 2.24
158 159 5.744666 ACTTCGCAAGTTTTAGCACTAAA 57.255 34.783 0.00 0.00 39.04 1.85
159 160 5.748592 ACTTCGCAAGTTTTAGCACTAAAG 58.251 37.500 3.29 0.00 39.04 1.85
160 161 5.296035 ACTTCGCAAGTTTTAGCACTAAAGT 59.704 36.000 3.29 0.00 39.04 2.66
161 162 5.090652 TCGCAAGTTTTAGCACTAAAGTG 57.909 39.130 5.73 5.73 43.51 3.16
162 163 4.812091 TCGCAAGTTTTAGCACTAAAGTGA 59.188 37.500 14.21 2.26 43.41 3.41
163 164 5.277154 TCGCAAGTTTTAGCACTAAAGTGAC 60.277 40.000 14.21 5.52 43.41 3.67
164 165 7.398494 TCGCAAGTTTTAGCACTAAAGTGACT 61.398 38.462 14.21 11.99 43.41 3.41
165 166 8.798147 TCGCAAGTTTTAGCACTAAAGTGACTT 61.798 37.037 14.21 10.49 43.41 3.01
174 175 3.450578 ACTAAAGTGACTTTTCGCGTCA 58.549 40.909 16.49 0.00 38.94 4.35
175 176 3.866910 ACTAAAGTGACTTTTCGCGTCAA 59.133 39.130 16.49 0.00 42.45 3.18
176 177 3.319238 AAAGTGACTTTTCGCGTCAAG 57.681 42.857 5.77 12.09 42.45 3.02
177 178 1.935933 AGTGACTTTTCGCGTCAAGT 58.064 45.000 20.61 20.61 42.45 3.16
178 179 2.277084 AGTGACTTTTCGCGTCAAGTT 58.723 42.857 21.16 8.06 42.45 2.66
179 180 2.284417 AGTGACTTTTCGCGTCAAGTTC 59.716 45.455 21.16 17.43 42.45 3.01
180 181 1.256895 TGACTTTTCGCGTCAAGTTCG 59.743 47.619 21.16 2.52 38.36 3.95
181 182 1.519758 GACTTTTCGCGTCAAGTTCGA 59.480 47.619 21.16 0.00 33.22 3.71
182 183 1.521423 ACTTTTCGCGTCAAGTTCGAG 59.479 47.619 16.59 4.54 33.56 4.04
183 184 0.231279 TTTTCGCGTCAAGTTCGAGC 59.769 50.000 5.77 0.00 33.56 5.03
184 185 0.872451 TTTCGCGTCAAGTTCGAGCA 60.872 50.000 5.77 0.00 33.56 4.26
185 186 1.545614 TTCGCGTCAAGTTCGAGCAC 61.546 55.000 5.77 0.00 33.56 4.40
186 187 2.853914 GCGTCAAGTTCGAGCACC 59.146 61.111 1.01 0.00 0.00 5.01
187 188 3.000080 GCGTCAAGTTCGAGCACCG 62.000 63.158 1.01 0.00 40.25 4.94
188 189 2.372690 CGTCAAGTTCGAGCACCGG 61.373 63.158 0.00 0.00 39.14 5.28
189 190 1.300697 GTCAAGTTCGAGCACCGGT 60.301 57.895 0.00 0.00 39.14 5.28
190 191 1.300620 TCAAGTTCGAGCACCGGTG 60.301 57.895 30.66 30.66 39.14 4.94
191 192 1.300620 CAAGTTCGAGCACCGGTGA 60.301 57.895 38.30 14.79 39.14 4.02
192 193 0.670546 CAAGTTCGAGCACCGGTGAT 60.671 55.000 38.30 33.72 39.14 3.06
193 194 0.670546 AAGTTCGAGCACCGGTGATG 60.671 55.000 38.30 24.57 39.14 3.07
194 195 1.374252 GTTCGAGCACCGGTGATGT 60.374 57.895 38.30 21.04 39.14 3.06
195 196 0.108992 GTTCGAGCACCGGTGATGTA 60.109 55.000 38.30 18.99 39.14 2.29
196 197 0.604073 TTCGAGCACCGGTGATGTAA 59.396 50.000 38.30 23.63 39.14 2.41
197 198 0.821517 TCGAGCACCGGTGATGTAAT 59.178 50.000 38.30 15.04 39.14 1.89
198 199 1.206132 TCGAGCACCGGTGATGTAATT 59.794 47.619 38.30 12.83 39.14 1.40
199 200 1.327460 CGAGCACCGGTGATGTAATTG 59.673 52.381 38.30 14.61 33.91 2.32
200 201 2.627945 GAGCACCGGTGATGTAATTGA 58.372 47.619 38.30 0.00 0.00 2.57
201 202 2.351726 GAGCACCGGTGATGTAATTGAC 59.648 50.000 38.30 13.58 0.00 3.18
202 203 2.027192 AGCACCGGTGATGTAATTGACT 60.027 45.455 38.30 17.79 0.00 3.41
203 204 2.351726 GCACCGGTGATGTAATTGACTC 59.648 50.000 38.30 11.49 0.00 3.36
204 205 2.603110 CACCGGTGATGTAATTGACTCG 59.397 50.000 31.31 0.00 0.00 4.18
205 206 1.593006 CCGGTGATGTAATTGACTCGC 59.407 52.381 0.00 0.00 0.00 5.03
206 207 2.267426 CGGTGATGTAATTGACTCGCA 58.733 47.619 0.00 0.00 0.00 5.10
207 208 2.866156 CGGTGATGTAATTGACTCGCAT 59.134 45.455 0.00 0.00 0.00 4.73
208 209 3.060272 CGGTGATGTAATTGACTCGCATC 60.060 47.826 0.00 0.00 37.17 3.91
209 210 4.122776 GGTGATGTAATTGACTCGCATCT 58.877 43.478 0.00 0.00 37.44 2.90
210 211 4.572389 GGTGATGTAATTGACTCGCATCTT 59.428 41.667 0.00 0.00 37.44 2.40
211 212 5.065218 GGTGATGTAATTGACTCGCATCTTT 59.935 40.000 0.00 0.00 37.44 2.52
212 213 6.257849 GGTGATGTAATTGACTCGCATCTTTA 59.742 38.462 0.00 0.00 37.44 1.85
213 214 7.201609 GGTGATGTAATTGACTCGCATCTTTAA 60.202 37.037 0.00 0.00 37.44 1.52
214 215 7.848051 GTGATGTAATTGACTCGCATCTTTAAG 59.152 37.037 0.00 0.00 37.44 1.85
215 216 7.763985 TGATGTAATTGACTCGCATCTTTAAGA 59.236 33.333 0.00 0.00 37.44 2.10
216 217 8.668510 ATGTAATTGACTCGCATCTTTAAGAT 57.331 30.769 0.99 0.99 34.74 2.40
227 228 3.536956 TCTTTAAGATGATTCGCGGGT 57.463 42.857 6.13 0.00 0.00 5.28
228 229 3.194861 TCTTTAAGATGATTCGCGGGTG 58.805 45.455 6.13 0.00 0.00 4.61
229 230 2.684001 TTAAGATGATTCGCGGGTGT 57.316 45.000 6.13 0.00 0.00 4.16
230 231 2.218953 TAAGATGATTCGCGGGTGTC 57.781 50.000 6.13 0.00 0.00 3.67
231 232 0.806102 AAGATGATTCGCGGGTGTCG 60.806 55.000 6.13 0.00 42.76 4.35
232 233 1.518572 GATGATTCGCGGGTGTCGT 60.519 57.895 6.13 0.54 41.72 4.34
233 234 1.480219 GATGATTCGCGGGTGTCGTC 61.480 60.000 6.13 6.83 41.72 4.20
234 235 1.945354 ATGATTCGCGGGTGTCGTCT 61.945 55.000 6.13 0.00 41.72 4.18
235 236 2.126071 ATTCGCGGGTGTCGTCTG 60.126 61.111 6.13 0.00 41.72 3.51
238 239 4.111016 CGCGGGTGTCGTCTGCTA 62.111 66.667 0.00 0.00 41.72 3.49
239 240 2.260434 GCGGGTGTCGTCTGCTAA 59.740 61.111 0.00 0.00 41.72 3.09
240 241 1.373748 GCGGGTGTCGTCTGCTAAA 60.374 57.895 0.00 0.00 41.72 1.85
241 242 1.623973 GCGGGTGTCGTCTGCTAAAC 61.624 60.000 0.00 0.00 41.72 2.01
242 243 0.038526 CGGGTGTCGTCTGCTAAACT 60.039 55.000 0.00 0.00 0.00 2.66
243 244 1.429463 GGGTGTCGTCTGCTAAACTG 58.571 55.000 0.00 0.00 0.00 3.16
244 245 1.000506 GGGTGTCGTCTGCTAAACTGA 59.999 52.381 0.00 0.00 0.00 3.41
245 246 2.547218 GGGTGTCGTCTGCTAAACTGAA 60.547 50.000 0.00 0.00 0.00 3.02
246 247 3.326747 GGTGTCGTCTGCTAAACTGAAT 58.673 45.455 0.00 0.00 0.00 2.57
247 248 3.746492 GGTGTCGTCTGCTAAACTGAATT 59.254 43.478 0.00 0.00 0.00 2.17
248 249 4.143094 GGTGTCGTCTGCTAAACTGAATTC 60.143 45.833 0.00 0.00 0.00 2.17
249 250 4.447724 GTGTCGTCTGCTAAACTGAATTCA 59.552 41.667 8.12 8.12 0.00 2.57
250 251 5.050363 GTGTCGTCTGCTAAACTGAATTCAA 60.050 40.000 9.88 0.00 0.00 2.69
251 252 5.525745 TGTCGTCTGCTAAACTGAATTCAAA 59.474 36.000 9.88 0.00 0.00 2.69
252 253 6.037720 TGTCGTCTGCTAAACTGAATTCAAAA 59.962 34.615 9.88 0.00 0.00 2.44
253 254 7.078228 GTCGTCTGCTAAACTGAATTCAAAAT 58.922 34.615 9.88 0.97 0.00 1.82
254 255 7.269297 GTCGTCTGCTAAACTGAATTCAAAATC 59.731 37.037 9.88 0.00 0.00 2.17
255 256 7.173218 TCGTCTGCTAAACTGAATTCAAAATCT 59.827 33.333 9.88 0.00 0.00 2.40
256 257 7.269937 CGTCTGCTAAACTGAATTCAAAATCTG 59.730 37.037 9.88 0.00 0.00 2.90
257 258 8.078596 GTCTGCTAAACTGAATTCAAAATCTGT 58.921 33.333 9.88 0.00 0.00 3.41
258 259 9.283768 TCTGCTAAACTGAATTCAAAATCTGTA 57.716 29.630 9.88 0.00 0.00 2.74
259 260 9.897744 CTGCTAAACTGAATTCAAAATCTGTAA 57.102 29.630 9.88 0.00 0.00 2.41
270 271 9.987272 AATTCAAAATCTGTAAAAAGAAGAGGG 57.013 29.630 0.00 0.00 0.00 4.30
271 272 8.760980 TTCAAAATCTGTAAAAAGAAGAGGGA 57.239 30.769 0.00 0.00 0.00 4.20
272 273 8.396272 TCAAAATCTGTAAAAAGAAGAGGGAG 57.604 34.615 0.00 0.00 0.00 4.30
273 274 8.217799 TCAAAATCTGTAAAAAGAAGAGGGAGA 58.782 33.333 0.00 0.00 0.00 3.71
274 275 8.510505 CAAAATCTGTAAAAAGAAGAGGGAGAG 58.489 37.037 0.00 0.00 0.00 3.20
275 276 7.560796 AATCTGTAAAAAGAAGAGGGAGAGA 57.439 36.000 0.00 0.00 0.00 3.10
276 277 6.597832 TCTGTAAAAAGAAGAGGGAGAGAG 57.402 41.667 0.00 0.00 0.00 3.20
277 278 6.315714 TCTGTAAAAAGAAGAGGGAGAGAGA 58.684 40.000 0.00 0.00 0.00 3.10
278 279 6.435904 TCTGTAAAAAGAAGAGGGAGAGAGAG 59.564 42.308 0.00 0.00 0.00 3.20
279 280 6.315714 TGTAAAAAGAAGAGGGAGAGAGAGA 58.684 40.000 0.00 0.00 0.00 3.10
280 281 6.435904 TGTAAAAAGAAGAGGGAGAGAGAGAG 59.564 42.308 0.00 0.00 0.00 3.20
281 282 4.946160 AAAGAAGAGGGAGAGAGAGAGA 57.054 45.455 0.00 0.00 0.00 3.10
282 283 4.510167 AAGAAGAGGGAGAGAGAGAGAG 57.490 50.000 0.00 0.00 0.00 3.20
283 284 3.736094 AGAAGAGGGAGAGAGAGAGAGA 58.264 50.000 0.00 0.00 0.00 3.10
284 285 3.713764 AGAAGAGGGAGAGAGAGAGAGAG 59.286 52.174 0.00 0.00 0.00 3.20
285 286 3.136641 AGAGGGAGAGAGAGAGAGAGT 57.863 52.381 0.00 0.00 0.00 3.24
286 287 4.280789 AGAGGGAGAGAGAGAGAGAGTA 57.719 50.000 0.00 0.00 0.00 2.59
287 288 4.832492 AGAGGGAGAGAGAGAGAGAGTAT 58.168 47.826 0.00 0.00 0.00 2.12
288 289 5.227593 AGAGGGAGAGAGAGAGAGAGTATT 58.772 45.833 0.00 0.00 0.00 1.89
289 290 5.072329 AGAGGGAGAGAGAGAGAGAGTATTG 59.928 48.000 0.00 0.00 0.00 1.90
290 291 4.104738 AGGGAGAGAGAGAGAGAGTATTGG 59.895 50.000 0.00 0.00 0.00 3.16
291 292 3.821033 GGAGAGAGAGAGAGAGTATTGGC 59.179 52.174 0.00 0.00 0.00 4.52
292 293 3.476552 AGAGAGAGAGAGAGTATTGGCG 58.523 50.000 0.00 0.00 0.00 5.69
293 294 2.552315 GAGAGAGAGAGAGTATTGGCGG 59.448 54.545 0.00 0.00 0.00 6.13
294 295 1.611491 GAGAGAGAGAGTATTGGCGGG 59.389 57.143 0.00 0.00 0.00 6.13
295 296 1.063567 AGAGAGAGAGTATTGGCGGGT 60.064 52.381 0.00 0.00 0.00 5.28
296 297 1.067821 GAGAGAGAGTATTGGCGGGTG 59.932 57.143 0.00 0.00 0.00 4.61
297 298 0.824759 GAGAGAGTATTGGCGGGTGT 59.175 55.000 0.00 0.00 0.00 4.16
298 299 1.207329 GAGAGAGTATTGGCGGGTGTT 59.793 52.381 0.00 0.00 0.00 3.32
299 300 1.066143 AGAGAGTATTGGCGGGTGTTG 60.066 52.381 0.00 0.00 0.00 3.33
300 301 0.690762 AGAGTATTGGCGGGTGTTGT 59.309 50.000 0.00 0.00 0.00 3.32
301 302 1.084289 GAGTATTGGCGGGTGTTGTC 58.916 55.000 0.00 0.00 0.00 3.18
302 303 0.690762 AGTATTGGCGGGTGTTGTCT 59.309 50.000 0.00 0.00 0.00 3.41
303 304 0.802494 GTATTGGCGGGTGTTGTCTG 59.198 55.000 0.00 0.00 0.00 3.51
304 305 0.958382 TATTGGCGGGTGTTGTCTGC 60.958 55.000 0.00 0.00 35.88 4.26
305 306 2.697147 ATTGGCGGGTGTTGTCTGCT 62.697 55.000 0.00 0.00 36.77 4.24
306 307 2.046009 TTGGCGGGTGTTGTCTGCTA 62.046 55.000 0.00 0.00 36.77 3.49
307 308 1.302192 GGCGGGTGTTGTCTGCTAA 60.302 57.895 0.00 0.00 36.77 3.09
308 309 0.887387 GGCGGGTGTTGTCTGCTAAA 60.887 55.000 0.00 0.00 36.77 1.85
309 310 0.237498 GCGGGTGTTGTCTGCTAAAC 59.763 55.000 0.00 0.00 33.96 2.01
310 311 1.878953 CGGGTGTTGTCTGCTAAACT 58.121 50.000 0.00 0.00 0.00 2.66
311 312 1.531149 CGGGTGTTGTCTGCTAAACTG 59.469 52.381 0.00 0.00 0.00 3.16
312 313 2.805295 CGGGTGTTGTCTGCTAAACTGA 60.805 50.000 0.00 0.00 0.00 3.41
313 314 3.211045 GGGTGTTGTCTGCTAAACTGAA 58.789 45.455 0.00 0.00 0.00 3.02
314 315 3.821033 GGGTGTTGTCTGCTAAACTGAAT 59.179 43.478 0.00 0.00 0.00 2.57
315 316 4.278419 GGGTGTTGTCTGCTAAACTGAATT 59.722 41.667 0.00 0.00 0.00 2.17
316 317 5.452777 GGTGTTGTCTGCTAAACTGAATTC 58.547 41.667 0.00 0.00 0.00 2.17
317 318 5.008613 GGTGTTGTCTGCTAAACTGAATTCA 59.991 40.000 8.12 8.12 0.00 2.57
318 319 6.459573 GGTGTTGTCTGCTAAACTGAATTCAA 60.460 38.462 9.88 0.00 0.00 2.69
319 320 6.972328 GTGTTGTCTGCTAAACTGAATTCAAA 59.028 34.615 9.88 0.00 0.00 2.69
320 321 7.487829 GTGTTGTCTGCTAAACTGAATTCAAAA 59.512 33.333 9.88 0.00 0.00 2.44
321 322 8.196771 TGTTGTCTGCTAAACTGAATTCAAAAT 58.803 29.630 9.88 0.97 0.00 1.82
322 323 8.694394 GTTGTCTGCTAAACTGAATTCAAAATC 58.306 33.333 9.88 0.00 0.00 2.17
323 324 8.169977 TGTCTGCTAAACTGAATTCAAAATCT 57.830 30.769 9.88 0.00 0.00 2.40
324 325 8.077991 TGTCTGCTAAACTGAATTCAAAATCTG 58.922 33.333 9.88 0.00 0.00 2.90
325 326 8.078596 GTCTGCTAAACTGAATTCAAAATCTGT 58.921 33.333 9.88 0.00 0.00 3.41
326 327 9.283768 TCTGCTAAACTGAATTCAAAATCTGTA 57.716 29.630 9.88 0.00 0.00 2.74
327 328 9.897744 CTGCTAAACTGAATTCAAAATCTGTAA 57.102 29.630 9.88 0.00 0.00 2.41
332 333 9.796120 AAACTGAATTCAAAATCTGTAAAACGA 57.204 25.926 9.88 0.00 0.00 3.85
333 334 9.796120 AACTGAATTCAAAATCTGTAAAACGAA 57.204 25.926 9.88 0.00 0.00 3.85
334 335 9.450807 ACTGAATTCAAAATCTGTAAAACGAAG 57.549 29.630 9.88 0.00 0.00 3.79
335 336 9.663904 CTGAATTCAAAATCTGTAAAACGAAGA 57.336 29.630 9.88 0.00 0.00 2.87
336 337 9.663904 TGAATTCAAAATCTGTAAAACGAAGAG 57.336 29.630 5.45 0.00 0.00 2.85
337 338 9.878599 GAATTCAAAATCTGTAAAACGAAGAGA 57.121 29.630 0.00 0.00 0.00 3.10
338 339 9.884465 AATTCAAAATCTGTAAAACGAAGAGAG 57.116 29.630 0.00 0.00 0.00 3.20
339 340 8.657074 TTCAAAATCTGTAAAACGAAGAGAGA 57.343 30.769 0.00 0.00 0.00 3.10
340 341 8.299262 TCAAAATCTGTAAAACGAAGAGAGAG 57.701 34.615 0.00 0.00 0.00 3.20
341 342 8.141909 TCAAAATCTGTAAAACGAAGAGAGAGA 58.858 33.333 0.00 0.00 0.00 3.10
342 343 8.431593 CAAAATCTGTAAAACGAAGAGAGAGAG 58.568 37.037 0.00 0.00 0.00 3.20
343 344 7.455641 AATCTGTAAAACGAAGAGAGAGAGA 57.544 36.000 0.00 0.00 0.00 3.10
344 345 6.489127 TCTGTAAAACGAAGAGAGAGAGAG 57.511 41.667 0.00 0.00 0.00 3.20
345 346 6.231951 TCTGTAAAACGAAGAGAGAGAGAGA 58.768 40.000 0.00 0.00 0.00 3.10
346 347 6.370442 TCTGTAAAACGAAGAGAGAGAGAGAG 59.630 42.308 0.00 0.00 0.00 3.20
347 348 6.231951 TGTAAAACGAAGAGAGAGAGAGAGA 58.768 40.000 0.00 0.00 0.00 3.10
348 349 5.880054 AAAACGAAGAGAGAGAGAGAGAG 57.120 43.478 0.00 0.00 0.00 3.20
349 350 3.543680 ACGAAGAGAGAGAGAGAGAGG 57.456 52.381 0.00 0.00 0.00 3.69
350 351 2.170607 ACGAAGAGAGAGAGAGAGAGGG 59.829 54.545 0.00 0.00 0.00 4.30
351 352 2.434336 CGAAGAGAGAGAGAGAGAGGGA 59.566 54.545 0.00 0.00 0.00 4.20
352 353 3.493350 CGAAGAGAGAGAGAGAGAGGGAG 60.493 56.522 0.00 0.00 0.00 4.30
353 354 2.412591 AGAGAGAGAGAGAGAGGGAGG 58.587 57.143 0.00 0.00 0.00 4.30
354 355 1.421646 GAGAGAGAGAGAGAGGGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
355 356 1.010793 AGAGAGAGAGAGAGGGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
356 357 1.421646 GAGAGAGAGAGAGGGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
357 358 0.478507 GAGAGAGAGAGGGAGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
358 359 0.998945 AGAGAGAGAGGGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
359 360 0.996762 GAGAGAGAGGGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
360 361 0.998945 AGAGAGAGGGAGGGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
361 362 2.018086 AGAGAGGGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
362 363 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
363 364 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
364 365 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
365 366 3.036959 GGGAGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
366 367 2.612251 GGAGGGAGGGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
367 368 2.015726 GGAGGGAGGGAGGGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
368 369 1.541672 GAGGGAGGGAGGGAGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
369 370 0.996762 GAGGGAGGGAGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
370 371 0.998945 AGGGAGGGAGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
371 372 1.152546 GGAGGGAGGGAGAGAGAGC 60.153 68.421 0.00 0.00 0.00 4.09
372 373 1.528309 GAGGGAGGGAGAGAGAGCG 60.528 68.421 0.00 0.00 0.00 5.03
373 374 2.520741 GGGAGGGAGAGAGAGCGG 60.521 72.222 0.00 0.00 0.00 5.52
374 375 3.223589 GGAGGGAGAGAGAGCGGC 61.224 72.222 0.00 0.00 0.00 6.53
375 376 2.123897 GAGGGAGAGAGAGCGGCT 60.124 66.667 0.00 0.00 0.00 5.52
376 377 1.756561 GAGGGAGAGAGAGCGGCTT 60.757 63.158 2.97 0.00 0.00 4.35
377 378 1.305718 AGGGAGAGAGAGCGGCTTT 60.306 57.895 2.97 0.00 0.00 3.51
378 379 0.907230 AGGGAGAGAGAGCGGCTTTT 60.907 55.000 2.97 0.00 0.00 2.27
379 380 0.461163 GGGAGAGAGAGCGGCTTTTC 60.461 60.000 2.97 5.63 0.00 2.29
380 381 0.247736 GGAGAGAGAGCGGCTTTTCA 59.752 55.000 2.97 0.00 0.00 2.69
381 382 1.338200 GGAGAGAGAGCGGCTTTTCAA 60.338 52.381 2.97 0.00 0.00 2.69
382 383 2.417719 GAGAGAGAGCGGCTTTTCAAA 58.582 47.619 2.97 0.00 0.00 2.69
383 384 2.147150 AGAGAGAGCGGCTTTTCAAAC 58.853 47.619 2.97 2.37 0.00 2.93
384 385 1.197949 GAGAGAGCGGCTTTTCAAACC 59.802 52.381 2.97 0.00 0.00 3.27
390 391 3.812577 GGCTTTTCAAACCGATGGG 57.187 52.632 0.00 0.00 40.11 4.00
391 392 0.389817 GGCTTTTCAAACCGATGGGC 60.390 55.000 0.00 0.00 36.48 5.36
392 393 0.603065 GCTTTTCAAACCGATGGGCT 59.397 50.000 0.00 0.00 36.48 5.19
393 394 1.816224 GCTTTTCAAACCGATGGGCTA 59.184 47.619 0.00 0.00 36.48 3.93
394 395 2.159379 GCTTTTCAAACCGATGGGCTAG 60.159 50.000 0.00 0.00 36.48 3.42
395 396 2.871096 TTTCAAACCGATGGGCTAGT 57.129 45.000 0.00 0.00 36.48 2.57
396 397 2.107950 TTCAAACCGATGGGCTAGTG 57.892 50.000 0.00 0.00 36.48 2.74
397 398 1.271856 TCAAACCGATGGGCTAGTGA 58.728 50.000 0.00 0.00 36.48 3.41
398 399 1.066430 TCAAACCGATGGGCTAGTGAC 60.066 52.381 0.00 0.00 36.48 3.67
399 400 0.981183 AAACCGATGGGCTAGTGACA 59.019 50.000 0.00 0.00 36.48 3.58
400 401 0.249398 AACCGATGGGCTAGTGACAC 59.751 55.000 0.00 0.00 36.48 3.67
401 402 0.902984 ACCGATGGGCTAGTGACACA 60.903 55.000 8.59 0.00 36.48 3.72
402 403 0.249120 CCGATGGGCTAGTGACACAA 59.751 55.000 8.59 0.00 0.00 3.33
403 404 1.134401 CCGATGGGCTAGTGACACAAT 60.134 52.381 8.59 0.00 0.00 2.71
404 405 1.935873 CGATGGGCTAGTGACACAATG 59.064 52.381 8.59 0.00 0.00 2.82
405 406 2.677902 CGATGGGCTAGTGACACAATGT 60.678 50.000 8.59 0.00 0.00 2.71
425 426 3.322541 TGTCGACTGACTTTGGGTGAATA 59.677 43.478 17.92 0.00 45.70 1.75
434 435 4.798882 ACTTTGGGTGAATAACTTGTGGA 58.201 39.130 0.00 0.00 0.00 4.02
448 449 0.695924 TGTGGACCCCATGAACGAAT 59.304 50.000 0.00 0.00 35.28 3.34
468 469 6.423905 ACGAATATCTAGCAACAACGCATTAT 59.576 34.615 0.00 0.00 0.00 1.28
488 491 7.201758 GCATTATTCCTGTCATGTCTTGATCAA 60.202 37.037 8.12 8.12 36.54 2.57
489 492 8.847196 CATTATTCCTGTCATGTCTTGATCAAT 58.153 33.333 8.96 0.00 36.54 2.57
490 493 6.694877 ATTCCTGTCATGTCTTGATCAATG 57.305 37.500 8.96 4.48 36.54 2.82
491 494 5.425196 TCCTGTCATGTCTTGATCAATGA 57.575 39.130 8.96 6.98 36.54 2.57
492 495 5.997843 TCCTGTCATGTCTTGATCAATGAT 58.002 37.500 8.96 0.00 36.54 2.45
494 497 5.820947 CCTGTCATGTCTTGATCAATGATCA 59.179 40.000 20.85 20.85 45.78 2.92
527 530 4.913924 GCACACAGAATCTTTACTTGCAAG 59.086 41.667 24.84 24.84 0.00 4.01
550 553 1.334869 AGGCTTTTCGTTGCTGACTTG 59.665 47.619 0.00 0.00 0.00 3.16
582 585 9.877178 ATGTATATAGAAATCTCCGGATTGTTC 57.123 33.333 3.57 8.81 40.86 3.18
583 586 8.866093 TGTATATAGAAATCTCCGGATTGTTCA 58.134 33.333 3.57 0.86 40.86 3.18
584 587 9.706691 GTATATAGAAATCTCCGGATTGTTCAA 57.293 33.333 3.57 0.00 40.86 2.69
586 589 7.938140 ATAGAAATCTCCGGATTGTTCAAAA 57.062 32.000 3.57 0.00 40.86 2.44
587 590 6.648879 AGAAATCTCCGGATTGTTCAAAAA 57.351 33.333 3.57 0.00 40.86 1.94
588 591 6.681777 AGAAATCTCCGGATTGTTCAAAAAG 58.318 36.000 3.57 0.00 40.86 2.27
589 592 6.490040 AGAAATCTCCGGATTGTTCAAAAAGA 59.510 34.615 3.57 0.00 40.86 2.52
590 593 6.648879 AATCTCCGGATTGTTCAAAAAGAA 57.351 33.333 3.57 0.00 40.30 2.52
591 594 6.648879 ATCTCCGGATTGTTCAAAAAGAAA 57.351 33.333 3.57 0.00 38.13 2.52
592 595 6.458232 TCTCCGGATTGTTCAAAAAGAAAA 57.542 33.333 3.57 0.00 38.13 2.29
593 596 6.868622 TCTCCGGATTGTTCAAAAAGAAAAA 58.131 32.000 3.57 0.00 37.83 1.94
649 652 3.888323 TGCATGACAAGGCAAAAAGACTA 59.112 39.130 0.00 0.00 40.81 2.59
659 662 2.809299 GCAAAAAGACTACGTCAGGGGT 60.809 50.000 0.00 0.00 34.60 4.95
661 664 4.634199 CAAAAAGACTACGTCAGGGGTTA 58.366 43.478 0.00 0.00 34.60 2.85
662 665 4.961438 AAAAGACTACGTCAGGGGTTAA 57.039 40.909 0.00 0.00 34.60 2.01
663 666 3.949842 AAGACTACGTCAGGGGTTAAC 57.050 47.619 0.00 0.00 34.60 2.01
666 669 1.897802 ACTACGTCAGGGGTTAACAGG 59.102 52.381 8.10 0.00 0.00 4.00
667 670 0.609662 TACGTCAGGGGTTAACAGGC 59.390 55.000 8.10 0.00 0.00 4.85
670 673 0.109723 GTCAGGGGTTAACAGGCACA 59.890 55.000 8.10 0.00 0.00 4.57
700 703 6.985653 TCCAGAAGAGGTAGAGGAATAATG 57.014 41.667 0.00 0.00 0.00 1.90
701 704 6.683537 TCCAGAAGAGGTAGAGGAATAATGA 58.316 40.000 0.00 0.00 0.00 2.57
711 719 4.904241 AGAGGAATAATGATGGCAGTAGC 58.096 43.478 0.00 0.00 41.10 3.58
712 720 4.596643 AGAGGAATAATGATGGCAGTAGCT 59.403 41.667 0.00 0.00 41.70 3.32
713 721 5.782331 AGAGGAATAATGATGGCAGTAGCTA 59.218 40.000 0.00 0.00 41.70 3.32
714 722 6.047511 AGGAATAATGATGGCAGTAGCTAG 57.952 41.667 0.00 0.00 41.70 3.42
756 764 3.683802 CAAAAGGAGTCCAGCAGATTCT 58.316 45.455 12.86 0.00 32.00 2.40
761 769 3.522750 AGGAGTCCAGCAGATTCTCAAAT 59.477 43.478 12.86 0.00 32.00 2.32
830 838 2.262915 CTTTCGTGCCTCGCTCCT 59.737 61.111 0.00 0.00 39.67 3.69
867 883 9.345254 TCTATCTTTCTATCTATCTCTCTCCCA 57.655 37.037 0.00 0.00 0.00 4.37
871 887 9.919416 TCTTTCTATCTATCTCTCTCCCATATG 57.081 37.037 0.00 0.00 0.00 1.78
900 916 8.777413 CCCATATGTATATATATGTGCTGCAAC 58.223 37.037 21.34 0.00 38.68 4.17
918 936 4.566759 TGCAACGCTTAGCTTAGAACATAG 59.433 41.667 3.38 0.00 0.00 2.23
953 971 1.004610 CGACATAAGGTTGCGCATCAG 60.005 52.381 12.75 0.00 0.00 2.90
954 972 2.279741 GACATAAGGTTGCGCATCAGA 58.720 47.619 12.75 0.00 0.00 3.27
955 973 2.677836 GACATAAGGTTGCGCATCAGAA 59.322 45.455 12.75 0.00 0.00 3.02
956 974 2.420022 ACATAAGGTTGCGCATCAGAAC 59.580 45.455 12.75 5.61 0.00 3.01
1003 1021 4.036804 TTCGGTTGTGCGCCATGC 62.037 61.111 4.18 0.00 46.70 4.06
1075 1096 2.938451 TCTGTTTCTAGCATCGGCATTG 59.062 45.455 0.00 0.00 44.61 2.82
1187 1210 2.105006 TCTGCAGGATCAGTTGAAGC 57.895 50.000 15.13 0.00 35.63 3.86
1328 1351 7.451731 TGGAAGAGGTATACCATCAAAATCT 57.548 36.000 23.87 12.52 38.89 2.40
1335 1358 8.310122 AGGTATACCATCAAAATCTGCATTTT 57.690 30.769 23.87 0.00 39.42 1.82
1337 1360 9.683069 GGTATACCATCAAAATCTGCATTTTAG 57.317 33.333 17.44 0.00 36.74 1.85
1343 1366 7.063780 CCATCAAAATCTGCATTTTAGTTGGTC 59.936 37.037 0.00 0.00 39.75 4.02
1350 1373 4.072131 TGCATTTTAGTTGGTCTGACCTC 58.928 43.478 26.03 18.44 39.58 3.85
1393 1416 7.488187 AATGAATGTGGAGTTGATATCTTCG 57.512 36.000 3.98 0.00 0.00 3.79
1403 1426 3.855255 TGATATCTTCGGGGCAAATGA 57.145 42.857 3.98 0.00 0.00 2.57
1404 1427 4.163441 TGATATCTTCGGGGCAAATGAA 57.837 40.909 3.98 0.00 0.00 2.57
1406 1429 4.520111 TGATATCTTCGGGGCAAATGAATG 59.480 41.667 3.98 0.00 0.00 2.67
1495 1518 3.174779 GGAGGAAGAGAAGTTACCACCT 58.825 50.000 0.00 0.00 0.00 4.00
1597 1620 1.977293 GATCACCACCCAGGAGAGGC 61.977 65.000 0.00 0.00 40.48 4.70
1706 1729 0.541863 ACAAGGAGGTAAGGGATGCG 59.458 55.000 0.00 0.00 0.00 4.73
1733 1756 0.951558 ACAGCGTGGACAAAATCACC 59.048 50.000 0.00 0.00 0.00 4.02
1753 1776 5.535783 TCACCATATGGCAAATCAAGTATGG 59.464 40.000 22.18 15.93 42.56 2.74
1765 1788 7.292292 CAAATCAAGTATGGCAATGTGTTTTG 58.708 34.615 0.00 2.59 0.00 2.44
1777 1802 6.582295 GGCAATGTGTTTTGTGTATTCTACTG 59.418 38.462 0.00 0.00 0.00 2.74
1789 1814 7.564793 TGTGTATTCTACTGCTAAATCATGGT 58.435 34.615 0.00 0.00 0.00 3.55
1792 1817 8.264347 TGTATTCTACTGCTAAATCATGGTCAA 58.736 33.333 0.00 0.00 0.00 3.18
1914 1939 2.055299 GTCCCGAACCTGAAGGACA 58.945 57.895 2.62 0.00 46.61 4.02
2060 2085 1.447489 CTGGAAGCACGAGCAGGAG 60.447 63.158 7.77 0.00 45.49 3.69
2253 2278 4.331168 CAGTGCCAAGTTTTAGCTAGCTAG 59.669 45.833 23.03 16.84 0.00 3.42
2369 2394 0.740516 GAGGTTCTCTGCTGCTGCTC 60.741 60.000 17.00 0.00 40.48 4.26
2370 2395 2.099431 GGTTCTCTGCTGCTGCTCG 61.099 63.158 17.00 7.98 40.48 5.03
2421 2454 5.182001 CCATTATTCCCTTTTCATAGCTCGG 59.818 44.000 0.00 0.00 0.00 4.63
2427 2460 3.118592 CCCTTTTCATAGCTCGGTCTTCT 60.119 47.826 0.00 0.00 0.00 2.85
2434 2467 1.446966 GCTCGGTCTTCTGGCTGTC 60.447 63.158 0.00 0.00 0.00 3.51
2435 2468 1.967535 CTCGGTCTTCTGGCTGTCA 59.032 57.895 0.00 0.00 0.00 3.58
2437 2470 1.751351 CTCGGTCTTCTGGCTGTCATA 59.249 52.381 0.00 0.00 0.00 2.15
2447 2480 0.386838 GGCTGTCATAATTGCAGGGC 59.613 55.000 0.00 0.00 31.63 5.19
2453 2486 1.872952 TCATAATTGCAGGGCGATTCG 59.127 47.619 6.94 0.62 41.20 3.34
2463 2496 1.392710 GGGCGATTCGGAGAGGAAGA 61.393 60.000 8.34 0.00 38.43 2.87
2656 2689 6.716284 TCTGAAACCATGGACACACATAATA 58.284 36.000 21.47 0.00 0.00 0.98
2929 5322 7.666804 TCTCCATCATTTGATCTTGAAACTTCA 59.333 33.333 0.00 0.00 31.49 3.02
2964 5357 6.433093 TCAAAGGTTAAAAGGAGTTAGGATGC 59.567 38.462 0.00 0.00 0.00 3.91
2965 5358 5.514500 AGGTTAAAAGGAGTTAGGATGCA 57.486 39.130 0.00 0.00 0.00 3.96
2966 5359 5.501156 AGGTTAAAAGGAGTTAGGATGCAG 58.499 41.667 0.00 0.00 0.00 4.41
2967 5360 5.250774 AGGTTAAAAGGAGTTAGGATGCAGA 59.749 40.000 0.00 0.00 0.00 4.26
2968 5361 5.586643 GGTTAAAAGGAGTTAGGATGCAGAG 59.413 44.000 0.00 0.00 0.00 3.35
2969 5362 3.922171 AAAGGAGTTAGGATGCAGAGG 57.078 47.619 0.00 0.00 0.00 3.69
2970 5363 1.127343 AGGAGTTAGGATGCAGAGGC 58.873 55.000 0.00 0.00 41.68 4.70
2971 5364 0.107643 GGAGTTAGGATGCAGAGGCC 59.892 60.000 0.00 0.00 40.13 5.19
2972 5365 0.249657 GAGTTAGGATGCAGAGGCCG 60.250 60.000 0.00 0.00 40.13 6.13
2973 5366 1.227674 GTTAGGATGCAGAGGCCGG 60.228 63.158 0.00 0.00 40.13 6.13
2974 5367 2.443394 TTAGGATGCAGAGGCCGGG 61.443 63.158 2.18 0.00 40.13 5.73
2977 5370 3.161450 GATGCAGAGGCCGGGGTA 61.161 66.667 2.18 0.00 40.13 3.69
2978 5371 2.690881 ATGCAGAGGCCGGGGTAA 60.691 61.111 2.18 0.00 40.13 2.85
2979 5372 2.942648 GATGCAGAGGCCGGGGTAAC 62.943 65.000 2.18 0.00 40.13 2.50
3029 5422 4.891627 TTTGACTGATTTCTGTGCGAAA 57.108 36.364 0.00 0.00 45.08 3.46
3370 5834 5.988310 TCCATCTGCAATTTGATCTTTGT 57.012 34.783 0.00 0.00 0.00 2.83
3479 5944 2.627699 GGAACACAGGATTGGCAGAAAA 59.372 45.455 0.00 0.00 0.00 2.29
3534 5999 2.034053 TGGAGCTTGTTTGCCTTTTACG 59.966 45.455 0.00 0.00 0.00 3.18
3631 6096 3.759618 AGTGCTTGACCTAGAGACAGTAC 59.240 47.826 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.699038 TGACCCAAGTTGAAGACTTTTGG 59.301 43.478 3.87 8.78 46.34 3.28
1 2 4.399303 AGTGACCCAAGTTGAAGACTTTTG 59.601 41.667 3.87 0.00 46.34 2.44
3 4 3.947834 CAGTGACCCAAGTTGAAGACTTT 59.052 43.478 3.87 0.00 46.34 2.66
7 8 2.503765 TGTCAGTGACCCAAGTTGAAGA 59.496 45.455 20.43 0.00 0.00 2.87
8 9 2.874701 CTGTCAGTGACCCAAGTTGAAG 59.125 50.000 20.43 4.09 0.00 3.02
9 10 2.238646 ACTGTCAGTGACCCAAGTTGAA 59.761 45.455 20.43 0.00 0.00 2.69
10 11 1.837439 ACTGTCAGTGACCCAAGTTGA 59.163 47.619 20.43 0.00 0.00 3.18
11 12 2.332063 ACTGTCAGTGACCCAAGTTG 57.668 50.000 20.43 0.00 0.00 3.16
21 22 1.300931 CGTGGGTCCACTGTCAGTG 60.301 63.158 23.72 23.72 45.53 3.66
22 23 3.138625 CGTGGGTCCACTGTCAGT 58.861 61.111 16.93 0.00 44.16 3.41
23 24 2.357517 GCGTGGGTCCACTGTCAG 60.358 66.667 16.93 0.00 44.16 3.51
24 25 3.936203 GGCGTGGGTCCACTGTCA 61.936 66.667 16.93 0.00 44.16 3.58
25 26 3.254024 ATGGCGTGGGTCCACTGTC 62.254 63.158 16.93 12.43 44.16 3.51
26 27 3.249189 ATGGCGTGGGTCCACTGT 61.249 61.111 16.93 0.00 44.16 3.55
27 28 2.747460 CATGGCGTGGGTCCACTG 60.747 66.667 16.93 11.69 44.16 3.66
28 29 4.722700 GCATGGCGTGGGTCCACT 62.723 66.667 16.93 0.00 44.16 4.00
29 30 4.722700 AGCATGGCGTGGGTCCAC 62.723 66.667 9.08 9.96 43.01 4.02
30 31 4.720902 CAGCATGGCGTGGGTCCA 62.721 66.667 9.08 0.00 38.09 4.02
31 32 4.722700 ACAGCATGGCGTGGGTCC 62.723 66.667 9.08 0.00 43.62 4.46
32 33 3.127533 GACAGCATGGCGTGGGTC 61.128 66.667 9.08 0.00 43.62 4.46
42 43 0.461516 CTCATCAGGCGTGACAGCAT 60.462 55.000 11.97 0.00 39.27 3.79
43 44 1.079612 CTCATCAGGCGTGACAGCA 60.080 57.895 11.97 0.00 39.27 4.41
44 45 2.459442 GCTCATCAGGCGTGACAGC 61.459 63.158 20.45 20.45 35.68 4.40
45 46 1.812922 GGCTCATCAGGCGTGACAG 60.813 63.158 11.97 11.54 34.75 3.51
46 47 2.265739 GGCTCATCAGGCGTGACA 59.734 61.111 11.97 0.33 34.75 3.58
47 48 2.512515 GGGCTCATCAGGCGTGAC 60.513 66.667 11.97 0.00 46.54 3.67
48 49 3.785859 GGGGCTCATCAGGCGTGA 61.786 66.667 12.13 12.13 46.54 4.35
52 53 4.864334 CCACGGGGCTCATCAGGC 62.864 72.222 0.00 0.00 44.78 4.85
53 54 4.181010 CCCACGGGGCTCATCAGG 62.181 72.222 0.00 0.00 35.35 3.86
63 64 1.011333 CAACTAAATACGCCCACGGG 58.989 55.000 0.00 0.00 46.04 5.28
64 65 0.375803 GCAACTAAATACGCCCACGG 59.624 55.000 0.00 0.00 46.04 4.94
66 67 3.775661 AATGCAACTAAATACGCCCAC 57.224 42.857 0.00 0.00 0.00 4.61
67 68 4.489810 CAAAATGCAACTAAATACGCCCA 58.510 39.130 0.00 0.00 0.00 5.36
68 69 3.305897 GCAAAATGCAACTAAATACGCCC 59.694 43.478 0.00 0.00 44.26 6.13
69 70 4.499174 GCAAAATGCAACTAAATACGCC 57.501 40.909 0.00 0.00 44.26 5.68
82 83 2.785879 GCAAATACGGTGCAAAATGC 57.214 45.000 0.00 0.00 45.29 3.56
89 90 3.788797 GCTTAGACATGCAAATACGGTGC 60.789 47.826 0.00 0.00 42.55 5.01
90 91 3.242739 GGCTTAGACATGCAAATACGGTG 60.243 47.826 0.00 0.00 0.00 4.94
91 92 2.943033 GGCTTAGACATGCAAATACGGT 59.057 45.455 0.00 0.00 0.00 4.83
92 93 2.942376 TGGCTTAGACATGCAAATACGG 59.058 45.455 0.00 0.00 0.00 4.02
93 94 4.094887 ACTTGGCTTAGACATGCAAATACG 59.905 41.667 0.50 0.00 0.00 3.06
94 95 5.567138 ACTTGGCTTAGACATGCAAATAC 57.433 39.130 0.50 0.00 0.00 1.89
95 96 5.622007 GCAACTTGGCTTAGACATGCAAATA 60.622 40.000 7.21 0.00 33.00 1.40
96 97 4.813027 CAACTTGGCTTAGACATGCAAAT 58.187 39.130 0.50 0.00 0.00 2.32
97 98 3.552684 GCAACTTGGCTTAGACATGCAAA 60.553 43.478 7.21 0.00 33.00 3.68
98 99 2.030007 GCAACTTGGCTTAGACATGCAA 60.030 45.455 7.21 0.00 33.00 4.08
99 100 1.541147 GCAACTTGGCTTAGACATGCA 59.459 47.619 7.21 0.00 33.00 3.96
100 101 1.815003 AGCAACTTGGCTTAGACATGC 59.185 47.619 4.11 4.11 42.71 4.06
101 102 2.415090 GCAGCAACTTGGCTTAGACATG 60.415 50.000 0.00 0.00 42.71 3.21
102 103 1.815003 GCAGCAACTTGGCTTAGACAT 59.185 47.619 0.00 0.00 42.71 3.06
103 104 1.238439 GCAGCAACTTGGCTTAGACA 58.762 50.000 0.00 0.00 42.71 3.41
104 105 1.068954 GTGCAGCAACTTGGCTTAGAC 60.069 52.381 0.00 0.00 42.71 2.59
105 106 1.238439 GTGCAGCAACTTGGCTTAGA 58.762 50.000 0.00 0.00 42.71 2.10
106 107 0.242017 GGTGCAGCAACTTGGCTTAG 59.758 55.000 11.86 0.00 42.71 2.18
107 108 1.514678 CGGTGCAGCAACTTGGCTTA 61.515 55.000 17.33 0.00 42.71 3.09
108 109 2.848858 CGGTGCAGCAACTTGGCTT 61.849 57.895 17.33 0.00 42.71 4.35
110 111 4.347453 CCGGTGCAGCAACTTGGC 62.347 66.667 17.33 0.00 0.00 4.52
111 112 2.406452 GAACCGGTGCAGCAACTTGG 62.406 60.000 17.33 10.85 0.00 3.61
112 113 1.008538 GAACCGGTGCAGCAACTTG 60.009 57.895 17.33 1.79 0.00 3.16
113 114 1.034838 TTGAACCGGTGCAGCAACTT 61.035 50.000 16.66 0.00 0.00 2.66
114 115 0.823356 ATTGAACCGGTGCAGCAACT 60.823 50.000 16.66 0.00 0.00 3.16
115 116 0.664166 CATTGAACCGGTGCAGCAAC 60.664 55.000 16.66 0.00 0.00 4.17
116 117 1.106351 ACATTGAACCGGTGCAGCAA 61.106 50.000 16.66 14.30 0.00 3.91
117 118 0.250510 TACATTGAACCGGTGCAGCA 60.251 50.000 16.66 1.52 0.00 4.41
118 119 0.168128 GTACATTGAACCGGTGCAGC 59.832 55.000 16.66 5.64 0.00 5.25
119 120 1.808411 AGTACATTGAACCGGTGCAG 58.192 50.000 16.66 7.91 0.00 4.41
120 121 2.147958 GAAGTACATTGAACCGGTGCA 58.852 47.619 12.64 12.64 0.00 4.57
121 122 1.127951 CGAAGTACATTGAACCGGTGC 59.872 52.381 8.52 6.80 0.00 5.01
122 123 1.127951 GCGAAGTACATTGAACCGGTG 59.872 52.381 8.52 0.00 0.00 4.94
123 124 1.270412 TGCGAAGTACATTGAACCGGT 60.270 47.619 0.00 0.00 0.00 5.28
124 125 1.434555 TGCGAAGTACATTGAACCGG 58.565 50.000 0.00 0.00 0.00 5.28
125 126 2.478894 ACTTGCGAAGTACATTGAACCG 59.521 45.455 0.00 0.00 40.69 4.44
126 127 4.483476 AACTTGCGAAGTACATTGAACC 57.517 40.909 0.00 0.00 41.91 3.62
127 128 6.086371 GCTAAAACTTGCGAAGTACATTGAAC 59.914 38.462 0.00 0.00 41.91 3.18
128 129 6.140110 GCTAAAACTTGCGAAGTACATTGAA 58.860 36.000 0.00 0.00 41.91 2.69
129 130 5.237561 TGCTAAAACTTGCGAAGTACATTGA 59.762 36.000 0.00 0.00 41.91 2.57
130 131 5.339611 GTGCTAAAACTTGCGAAGTACATTG 59.660 40.000 0.00 0.00 41.91 2.82
131 132 5.238650 AGTGCTAAAACTTGCGAAGTACATT 59.761 36.000 0.00 2.64 41.91 2.71
132 133 4.755123 AGTGCTAAAACTTGCGAAGTACAT 59.245 37.500 0.00 0.00 41.91 2.29
133 134 4.124238 AGTGCTAAAACTTGCGAAGTACA 58.876 39.130 0.00 0.00 41.91 2.90
134 135 4.727235 AGTGCTAAAACTTGCGAAGTAC 57.273 40.909 2.60 0.00 41.91 2.73
135 136 6.480981 ACTTTAGTGCTAAAACTTGCGAAGTA 59.519 34.615 5.97 0.00 41.91 2.24
136 137 5.296035 ACTTTAGTGCTAAAACTTGCGAAGT 59.704 36.000 5.97 0.00 45.46 3.01
137 138 5.621228 CACTTTAGTGCTAAAACTTGCGAAG 59.379 40.000 5.97 0.00 39.39 3.79
138 139 5.294799 TCACTTTAGTGCTAAAACTTGCGAA 59.705 36.000 5.00 0.00 45.25 4.70
139 140 4.812091 TCACTTTAGTGCTAAAACTTGCGA 59.188 37.500 5.00 0.00 45.25 5.10
140 141 4.904154 GTCACTTTAGTGCTAAAACTTGCG 59.096 41.667 5.00 0.00 45.25 4.85
141 142 6.061231 AGTCACTTTAGTGCTAAAACTTGC 57.939 37.500 5.00 0.00 45.25 4.01
142 143 8.911247 AAAAGTCACTTTAGTGCTAAAACTTG 57.089 30.769 2.38 9.41 45.25 3.16
143 144 7.908601 CGAAAAGTCACTTTAGTGCTAAAACTT 59.091 33.333 2.38 11.47 45.25 2.66
144 145 7.407337 CGAAAAGTCACTTTAGTGCTAAAACT 58.593 34.615 2.38 0.86 45.25 2.66
145 146 6.140265 GCGAAAAGTCACTTTAGTGCTAAAAC 59.860 38.462 2.38 0.00 45.25 2.43
146 147 6.196571 GCGAAAAGTCACTTTAGTGCTAAAA 58.803 36.000 2.38 0.00 45.25 1.52
147 148 5.557514 CGCGAAAAGTCACTTTAGTGCTAAA 60.558 40.000 2.38 4.57 45.25 1.85
148 149 4.084745 CGCGAAAAGTCACTTTAGTGCTAA 60.085 41.667 2.38 0.00 45.25 3.09
149 150 3.427528 CGCGAAAAGTCACTTTAGTGCTA 59.572 43.478 2.38 0.00 45.25 3.49
150 151 2.221055 CGCGAAAAGTCACTTTAGTGCT 59.779 45.455 2.38 3.51 45.25 4.40
151 152 2.033151 ACGCGAAAAGTCACTTTAGTGC 60.033 45.455 15.93 7.18 45.25 4.40
152 153 3.244345 TGACGCGAAAAGTCACTTTAGTG 59.756 43.478 15.93 10.02 42.91 2.74
153 154 3.450578 TGACGCGAAAAGTCACTTTAGT 58.549 40.909 15.93 1.97 42.91 2.24
154 155 4.025979 ACTTGACGCGAAAAGTCACTTTAG 60.026 41.667 15.93 2.30 46.81 1.85
155 156 3.866910 ACTTGACGCGAAAAGTCACTTTA 59.133 39.130 15.93 0.00 46.81 1.85
156 157 2.676342 ACTTGACGCGAAAAGTCACTTT 59.324 40.909 15.93 0.00 46.81 2.66
157 158 2.277084 ACTTGACGCGAAAAGTCACTT 58.723 42.857 15.93 0.00 46.81 3.16
158 159 1.935933 ACTTGACGCGAAAAGTCACT 58.064 45.000 15.93 0.00 46.81 3.41
159 160 2.625828 GAACTTGACGCGAAAAGTCAC 58.374 47.619 24.03 18.55 46.81 3.67
160 161 1.256895 CGAACTTGACGCGAAAAGTCA 59.743 47.619 24.03 11.20 45.68 3.41
161 162 1.519758 TCGAACTTGACGCGAAAAGTC 59.480 47.619 24.03 17.74 35.60 3.01
162 163 1.521423 CTCGAACTTGACGCGAAAAGT 59.479 47.619 15.93 18.78 38.25 2.66
163 164 1.718672 GCTCGAACTTGACGCGAAAAG 60.719 52.381 15.93 18.08 33.26 2.27
164 165 0.231279 GCTCGAACTTGACGCGAAAA 59.769 50.000 15.93 5.47 33.26 2.29
165 166 0.872451 TGCTCGAACTTGACGCGAAA 60.872 50.000 15.93 5.90 33.26 3.46
166 167 1.299544 TGCTCGAACTTGACGCGAA 60.300 52.632 15.93 0.00 33.26 4.70
167 168 2.014554 GTGCTCGAACTTGACGCGA 61.015 57.895 15.93 0.00 0.00 5.87
168 169 2.465920 GTGCTCGAACTTGACGCG 59.534 61.111 3.53 3.53 0.00 6.01
169 170 2.853914 GGTGCTCGAACTTGACGC 59.146 61.111 0.00 0.00 0.00 5.19
170 171 2.372690 CCGGTGCTCGAACTTGACG 61.373 63.158 0.00 0.00 42.43 4.35
171 172 1.300697 ACCGGTGCTCGAACTTGAC 60.301 57.895 6.12 0.00 42.43 3.18
172 173 1.300620 CACCGGTGCTCGAACTTGA 60.301 57.895 24.02 0.00 42.43 3.02
173 174 0.670546 ATCACCGGTGCTCGAACTTG 60.671 55.000 30.25 1.91 42.43 3.16
174 175 0.670546 CATCACCGGTGCTCGAACTT 60.671 55.000 30.25 3.72 42.43 2.66
175 176 1.079819 CATCACCGGTGCTCGAACT 60.080 57.895 30.25 4.96 42.43 3.01
176 177 0.108992 TACATCACCGGTGCTCGAAC 60.109 55.000 30.25 0.00 42.43 3.95
177 178 0.604073 TTACATCACCGGTGCTCGAA 59.396 50.000 30.25 17.29 42.43 3.71
178 179 0.821517 ATTACATCACCGGTGCTCGA 59.178 50.000 30.25 13.34 42.43 4.04
179 180 1.327460 CAATTACATCACCGGTGCTCG 59.673 52.381 30.25 20.98 38.88 5.03
180 181 2.351726 GTCAATTACATCACCGGTGCTC 59.648 50.000 30.25 1.49 0.00 4.26
181 182 2.027192 AGTCAATTACATCACCGGTGCT 60.027 45.455 30.25 18.65 0.00 4.40
182 183 2.351726 GAGTCAATTACATCACCGGTGC 59.648 50.000 30.25 11.44 0.00 5.01
183 184 2.603110 CGAGTCAATTACATCACCGGTG 59.397 50.000 29.26 29.26 0.00 4.94
184 185 2.888594 CGAGTCAATTACATCACCGGT 58.111 47.619 0.00 0.00 0.00 5.28
185 186 1.593006 GCGAGTCAATTACATCACCGG 59.407 52.381 0.00 0.00 0.00 5.28
186 187 2.267426 TGCGAGTCAATTACATCACCG 58.733 47.619 0.00 0.00 0.00 4.94
187 188 4.122776 AGATGCGAGTCAATTACATCACC 58.877 43.478 0.00 0.00 39.64 4.02
188 189 5.725110 AAGATGCGAGTCAATTACATCAC 57.275 39.130 0.00 0.00 39.64 3.06
189 190 7.763985 TCTTAAAGATGCGAGTCAATTACATCA 59.236 33.333 0.00 0.00 39.64 3.07
190 191 8.131455 TCTTAAAGATGCGAGTCAATTACATC 57.869 34.615 0.00 0.00 37.89 3.06
191 192 8.554528 CATCTTAAAGATGCGAGTCAATTACAT 58.445 33.333 0.00 0.00 44.69 2.29
192 193 7.909267 CATCTTAAAGATGCGAGTCAATTACA 58.091 34.615 0.00 0.00 44.69 2.41
206 207 3.809832 CACCCGCGAATCATCTTAAAGAT 59.190 43.478 8.23 0.00 34.74 2.40
207 208 3.194861 CACCCGCGAATCATCTTAAAGA 58.805 45.455 8.23 0.00 0.00 2.52
208 209 2.936498 ACACCCGCGAATCATCTTAAAG 59.064 45.455 8.23 0.00 0.00 1.85
209 210 2.933906 GACACCCGCGAATCATCTTAAA 59.066 45.455 8.23 0.00 0.00 1.52
210 211 2.546778 GACACCCGCGAATCATCTTAA 58.453 47.619 8.23 0.00 0.00 1.85
211 212 1.535226 CGACACCCGCGAATCATCTTA 60.535 52.381 8.23 0.00 0.00 2.10
212 213 0.806102 CGACACCCGCGAATCATCTT 60.806 55.000 8.23 0.00 0.00 2.40
213 214 1.226974 CGACACCCGCGAATCATCT 60.227 57.895 8.23 0.00 0.00 2.90
214 215 1.480219 GACGACACCCGCGAATCATC 61.480 60.000 8.23 0.00 43.32 2.92
215 216 1.518572 GACGACACCCGCGAATCAT 60.519 57.895 8.23 0.00 43.32 2.45
216 217 2.126228 GACGACACCCGCGAATCA 60.126 61.111 8.23 0.00 43.32 2.57
217 218 2.158959 CAGACGACACCCGCGAATC 61.159 63.158 8.23 0.00 43.32 2.52
218 219 2.126071 CAGACGACACCCGCGAAT 60.126 61.111 8.23 0.00 43.32 3.34
221 222 3.620300 TTAGCAGACGACACCCGCG 62.620 63.158 0.00 0.00 43.32 6.46
222 223 1.373748 TTTAGCAGACGACACCCGC 60.374 57.895 0.00 0.00 43.32 6.13
223 224 0.038526 AGTTTAGCAGACGACACCCG 60.039 55.000 0.00 0.00 45.44 5.28
224 225 1.000506 TCAGTTTAGCAGACGACACCC 59.999 52.381 0.00 0.00 0.00 4.61
225 226 2.433868 TCAGTTTAGCAGACGACACC 57.566 50.000 0.00 0.00 0.00 4.16
226 227 4.447724 TGAATTCAGTTTAGCAGACGACAC 59.552 41.667 3.38 0.00 0.00 3.67
227 228 4.627058 TGAATTCAGTTTAGCAGACGACA 58.373 39.130 3.38 0.00 0.00 4.35
228 229 5.591643 TTGAATTCAGTTTAGCAGACGAC 57.408 39.130 8.41 0.00 0.00 4.34
229 230 6.612247 TTTTGAATTCAGTTTAGCAGACGA 57.388 33.333 8.41 0.00 0.00 4.20
230 231 7.269937 CAGATTTTGAATTCAGTTTAGCAGACG 59.730 37.037 8.41 0.00 0.00 4.18
231 232 8.078596 ACAGATTTTGAATTCAGTTTAGCAGAC 58.921 33.333 8.41 0.00 0.00 3.51
232 233 8.169977 ACAGATTTTGAATTCAGTTTAGCAGA 57.830 30.769 8.41 0.00 0.00 4.26
233 234 9.897744 TTACAGATTTTGAATTCAGTTTAGCAG 57.102 29.630 8.41 0.00 0.00 4.24
244 245 9.987272 CCCTCTTCTTTTTACAGATTTTGAATT 57.013 29.630 0.00 0.00 0.00 2.17
245 246 9.367160 TCCCTCTTCTTTTTACAGATTTTGAAT 57.633 29.630 0.00 0.00 0.00 2.57
246 247 8.760980 TCCCTCTTCTTTTTACAGATTTTGAA 57.239 30.769 0.00 0.00 0.00 2.69
247 248 8.217799 TCTCCCTCTTCTTTTTACAGATTTTGA 58.782 33.333 0.00 0.00 0.00 2.69
248 249 8.396272 TCTCCCTCTTCTTTTTACAGATTTTG 57.604 34.615 0.00 0.00 0.00 2.44
249 250 8.440771 TCTCTCCCTCTTCTTTTTACAGATTTT 58.559 33.333 0.00 0.00 0.00 1.82
250 251 7.978925 TCTCTCCCTCTTCTTTTTACAGATTT 58.021 34.615 0.00 0.00 0.00 2.17
251 252 7.456269 TCTCTCTCCCTCTTCTTTTTACAGATT 59.544 37.037 0.00 0.00 0.00 2.40
252 253 6.957020 TCTCTCTCCCTCTTCTTTTTACAGAT 59.043 38.462 0.00 0.00 0.00 2.90
253 254 6.315714 TCTCTCTCCCTCTTCTTTTTACAGA 58.684 40.000 0.00 0.00 0.00 3.41
254 255 6.435904 TCTCTCTCTCCCTCTTCTTTTTACAG 59.564 42.308 0.00 0.00 0.00 2.74
255 256 6.315714 TCTCTCTCTCCCTCTTCTTTTTACA 58.684 40.000 0.00 0.00 0.00 2.41
256 257 6.661805 TCTCTCTCTCTCCCTCTTCTTTTTAC 59.338 42.308 0.00 0.00 0.00 2.01
257 258 6.795590 TCTCTCTCTCTCCCTCTTCTTTTTA 58.204 40.000 0.00 0.00 0.00 1.52
258 259 5.650283 TCTCTCTCTCTCCCTCTTCTTTTT 58.350 41.667 0.00 0.00 0.00 1.94
259 260 5.015178 TCTCTCTCTCTCTCCCTCTTCTTTT 59.985 44.000 0.00 0.00 0.00 2.27
260 261 4.540099 TCTCTCTCTCTCTCCCTCTTCTTT 59.460 45.833 0.00 0.00 0.00 2.52
261 262 4.111577 TCTCTCTCTCTCTCCCTCTTCTT 58.888 47.826 0.00 0.00 0.00 2.52
262 263 3.713764 CTCTCTCTCTCTCTCCCTCTTCT 59.286 52.174 0.00 0.00 0.00 2.85
263 264 3.456277 ACTCTCTCTCTCTCTCCCTCTTC 59.544 52.174 0.00 0.00 0.00 2.87
264 265 3.464828 ACTCTCTCTCTCTCTCCCTCTT 58.535 50.000 0.00 0.00 0.00 2.85
265 266 3.136641 ACTCTCTCTCTCTCTCCCTCT 57.863 52.381 0.00 0.00 0.00 3.69
266 267 5.308825 CAATACTCTCTCTCTCTCTCCCTC 58.691 50.000 0.00 0.00 0.00 4.30
267 268 4.104738 CCAATACTCTCTCTCTCTCTCCCT 59.895 50.000 0.00 0.00 0.00 4.20
268 269 4.398319 CCAATACTCTCTCTCTCTCTCCC 58.602 52.174 0.00 0.00 0.00 4.30
269 270 3.821033 GCCAATACTCTCTCTCTCTCTCC 59.179 52.174 0.00 0.00 0.00 3.71
270 271 3.498397 CGCCAATACTCTCTCTCTCTCTC 59.502 52.174 0.00 0.00 0.00 3.20
271 272 3.476552 CGCCAATACTCTCTCTCTCTCT 58.523 50.000 0.00 0.00 0.00 3.10
272 273 2.552315 CCGCCAATACTCTCTCTCTCTC 59.448 54.545 0.00 0.00 0.00 3.20
273 274 2.582052 CCGCCAATACTCTCTCTCTCT 58.418 52.381 0.00 0.00 0.00 3.10
274 275 1.611491 CCCGCCAATACTCTCTCTCTC 59.389 57.143 0.00 0.00 0.00 3.20
275 276 1.063567 ACCCGCCAATACTCTCTCTCT 60.064 52.381 0.00 0.00 0.00 3.10
276 277 1.067821 CACCCGCCAATACTCTCTCTC 59.932 57.143 0.00 0.00 0.00 3.20
277 278 1.115467 CACCCGCCAATACTCTCTCT 58.885 55.000 0.00 0.00 0.00 3.10
278 279 0.824759 ACACCCGCCAATACTCTCTC 59.175 55.000 0.00 0.00 0.00 3.20
279 280 1.066143 CAACACCCGCCAATACTCTCT 60.066 52.381 0.00 0.00 0.00 3.10
280 281 1.338769 ACAACACCCGCCAATACTCTC 60.339 52.381 0.00 0.00 0.00 3.20
281 282 0.690762 ACAACACCCGCCAATACTCT 59.309 50.000 0.00 0.00 0.00 3.24
282 283 1.084289 GACAACACCCGCCAATACTC 58.916 55.000 0.00 0.00 0.00 2.59
283 284 0.690762 AGACAACACCCGCCAATACT 59.309 50.000 0.00 0.00 0.00 2.12
284 285 0.802494 CAGACAACACCCGCCAATAC 59.198 55.000 0.00 0.00 0.00 1.89
285 286 0.958382 GCAGACAACACCCGCCAATA 60.958 55.000 0.00 0.00 0.00 1.90
286 287 2.268076 GCAGACAACACCCGCCAAT 61.268 57.895 0.00 0.00 0.00 3.16
287 288 2.046009 TAGCAGACAACACCCGCCAA 62.046 55.000 0.00 0.00 0.00 4.52
288 289 2.046009 TTAGCAGACAACACCCGCCA 62.046 55.000 0.00 0.00 0.00 5.69
289 290 0.887387 TTTAGCAGACAACACCCGCC 60.887 55.000 0.00 0.00 0.00 6.13
290 291 0.237498 GTTTAGCAGACAACACCCGC 59.763 55.000 0.00 0.00 0.00 6.13
291 292 1.531149 CAGTTTAGCAGACAACACCCG 59.469 52.381 0.00 0.00 0.00 5.28
292 293 2.846193 TCAGTTTAGCAGACAACACCC 58.154 47.619 0.00 0.00 0.00 4.61
293 294 5.008613 TGAATTCAGTTTAGCAGACAACACC 59.991 40.000 3.38 0.00 0.00 4.16
294 295 6.060028 TGAATTCAGTTTAGCAGACAACAC 57.940 37.500 3.38 0.00 0.00 3.32
295 296 6.691754 TTGAATTCAGTTTAGCAGACAACA 57.308 33.333 8.41 0.00 0.00 3.33
296 297 7.985634 TTTTGAATTCAGTTTAGCAGACAAC 57.014 32.000 8.41 0.00 0.00 3.32
297 298 8.632679 AGATTTTGAATTCAGTTTAGCAGACAA 58.367 29.630 8.41 0.00 0.00 3.18
298 299 8.077991 CAGATTTTGAATTCAGTTTAGCAGACA 58.922 33.333 8.41 0.00 0.00 3.41
299 300 8.078596 ACAGATTTTGAATTCAGTTTAGCAGAC 58.921 33.333 8.41 0.00 0.00 3.51
300 301 8.169977 ACAGATTTTGAATTCAGTTTAGCAGA 57.830 30.769 8.41 0.00 0.00 4.26
301 302 9.897744 TTACAGATTTTGAATTCAGTTTAGCAG 57.102 29.630 8.41 0.00 0.00 4.24
306 307 9.796120 TCGTTTTACAGATTTTGAATTCAGTTT 57.204 25.926 8.41 0.00 0.00 2.66
307 308 9.796120 TTCGTTTTACAGATTTTGAATTCAGTT 57.204 25.926 8.41 0.00 0.00 3.16
308 309 9.450807 CTTCGTTTTACAGATTTTGAATTCAGT 57.549 29.630 8.41 4.72 0.00 3.41
309 310 9.663904 TCTTCGTTTTACAGATTTTGAATTCAG 57.336 29.630 8.41 0.00 0.00 3.02
310 311 9.663904 CTCTTCGTTTTACAGATTTTGAATTCA 57.336 29.630 3.38 3.38 0.00 2.57
311 312 9.878599 TCTCTTCGTTTTACAGATTTTGAATTC 57.121 29.630 0.00 0.00 0.00 2.17
312 313 9.884465 CTCTCTTCGTTTTACAGATTTTGAATT 57.116 29.630 0.00 0.00 0.00 2.17
313 314 9.273016 TCTCTCTTCGTTTTACAGATTTTGAAT 57.727 29.630 0.00 0.00 0.00 2.57
314 315 8.657074 TCTCTCTTCGTTTTACAGATTTTGAA 57.343 30.769 0.00 0.00 0.00 2.69
315 316 8.141909 TCTCTCTCTTCGTTTTACAGATTTTGA 58.858 33.333 0.00 0.00 0.00 2.69
316 317 8.299262 TCTCTCTCTTCGTTTTACAGATTTTG 57.701 34.615 0.00 0.00 0.00 2.44
317 318 8.361139 TCTCTCTCTCTTCGTTTTACAGATTTT 58.639 33.333 0.00 0.00 0.00 1.82
318 319 7.887381 TCTCTCTCTCTTCGTTTTACAGATTT 58.113 34.615 0.00 0.00 0.00 2.17
319 320 7.392113 TCTCTCTCTCTCTTCGTTTTACAGATT 59.608 37.037 0.00 0.00 0.00 2.40
320 321 6.882140 TCTCTCTCTCTCTTCGTTTTACAGAT 59.118 38.462 0.00 0.00 0.00 2.90
321 322 6.231951 TCTCTCTCTCTCTTCGTTTTACAGA 58.768 40.000 0.00 0.00 0.00 3.41
322 323 6.370442 TCTCTCTCTCTCTCTTCGTTTTACAG 59.630 42.308 0.00 0.00 0.00 2.74
323 324 6.231951 TCTCTCTCTCTCTCTTCGTTTTACA 58.768 40.000 0.00 0.00 0.00 2.41
324 325 6.183360 CCTCTCTCTCTCTCTCTTCGTTTTAC 60.183 46.154 0.00 0.00 0.00 2.01
325 326 5.878116 CCTCTCTCTCTCTCTCTTCGTTTTA 59.122 44.000 0.00 0.00 0.00 1.52
326 327 4.700213 CCTCTCTCTCTCTCTCTTCGTTTT 59.300 45.833 0.00 0.00 0.00 2.43
327 328 4.261801 CCTCTCTCTCTCTCTCTTCGTTT 58.738 47.826 0.00 0.00 0.00 3.60
328 329 3.370527 CCCTCTCTCTCTCTCTCTTCGTT 60.371 52.174 0.00 0.00 0.00 3.85
329 330 2.170607 CCCTCTCTCTCTCTCTCTTCGT 59.829 54.545 0.00 0.00 0.00 3.85
330 331 2.434336 TCCCTCTCTCTCTCTCTCTTCG 59.566 54.545 0.00 0.00 0.00 3.79
331 332 3.181450 CCTCCCTCTCTCTCTCTCTCTTC 60.181 56.522 0.00 0.00 0.00 2.87
332 333 2.780010 CCTCCCTCTCTCTCTCTCTCTT 59.220 54.545 0.00 0.00 0.00 2.85
333 334 2.412591 CCTCCCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
334 335 1.421646 CCCTCCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
335 336 1.010793 TCCCTCCCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
336 337 1.421646 CTCCCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
337 338 1.522900 CTCCCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
338 339 0.478507 CCTCCCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
339 340 0.998945 CCCTCCCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
340 341 0.996762 TCCCTCCCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
341 342 0.998945 CTCCCTCCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
342 343 1.541672 CTCCCTCCCTCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
343 344 2.018086 CCTCCCTCCCTCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
344 345 2.612251 CCTCCCTCCCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
345 346 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
346 347 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
347 348 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
348 349 3.036959 TCTCCCTCCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
349 350 2.015726 TCTCTCCCTCCCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
350 351 0.996762 TCTCTCTCCCTCCCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
351 352 0.998945 CTCTCTCTCCCTCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
352 353 1.541672 CTCTCTCTCCCTCCCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
353 354 1.152546 GCTCTCTCTCCCTCCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
354 355 1.528309 CGCTCTCTCTCCCTCCCTC 60.528 68.421 0.00 0.00 0.00 4.30
355 356 2.600731 CGCTCTCTCTCCCTCCCT 59.399 66.667 0.00 0.00 0.00 4.20
356 357 2.520741 CCGCTCTCTCTCCCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
357 358 3.223589 GCCGCTCTCTCTCCCTCC 61.224 72.222 0.00 0.00 0.00 4.30
358 359 1.326951 AAAGCCGCTCTCTCTCCCTC 61.327 60.000 0.00 0.00 0.00 4.30
359 360 0.907230 AAAAGCCGCTCTCTCTCCCT 60.907 55.000 0.00 0.00 0.00 4.20
360 361 0.461163 GAAAAGCCGCTCTCTCTCCC 60.461 60.000 0.00 0.00 0.00 4.30
361 362 0.247736 TGAAAAGCCGCTCTCTCTCC 59.752 55.000 0.00 0.00 0.00 3.71
362 363 2.086054 TTGAAAAGCCGCTCTCTCTC 57.914 50.000 0.00 0.00 0.00 3.20
363 364 2.147150 GTTTGAAAAGCCGCTCTCTCT 58.853 47.619 0.00 0.00 0.00 3.10
364 365 1.197949 GGTTTGAAAAGCCGCTCTCTC 59.802 52.381 0.00 0.00 37.49 3.20
365 366 1.239347 GGTTTGAAAAGCCGCTCTCT 58.761 50.000 0.00 0.00 37.49 3.10
366 367 3.775065 GGTTTGAAAAGCCGCTCTC 57.225 52.632 0.00 0.00 37.49 3.20
372 373 0.389817 GCCCATCGGTTTGAAAAGCC 60.390 55.000 0.00 0.00 44.66 4.35
373 374 0.603065 AGCCCATCGGTTTGAAAAGC 59.397 50.000 0.00 0.00 0.00 3.51
374 375 3.081804 ACTAGCCCATCGGTTTGAAAAG 58.918 45.455 0.00 0.00 0.00 2.27
375 376 2.817258 CACTAGCCCATCGGTTTGAAAA 59.183 45.455 0.00 0.00 0.00 2.29
376 377 2.039216 TCACTAGCCCATCGGTTTGAAA 59.961 45.455 0.00 0.00 0.00 2.69
377 378 1.626321 TCACTAGCCCATCGGTTTGAA 59.374 47.619 0.00 0.00 0.00 2.69
378 379 1.066430 GTCACTAGCCCATCGGTTTGA 60.066 52.381 0.00 0.00 0.00 2.69
379 380 1.338674 TGTCACTAGCCCATCGGTTTG 60.339 52.381 0.00 0.00 0.00 2.93
380 381 0.981183 TGTCACTAGCCCATCGGTTT 59.019 50.000 0.00 0.00 0.00 3.27
381 382 0.249398 GTGTCACTAGCCCATCGGTT 59.751 55.000 0.00 0.00 0.00 4.44
382 383 0.902984 TGTGTCACTAGCCCATCGGT 60.903 55.000 4.27 0.00 0.00 4.69
383 384 0.249120 TTGTGTCACTAGCCCATCGG 59.751 55.000 4.27 0.00 0.00 4.18
384 385 1.935873 CATTGTGTCACTAGCCCATCG 59.064 52.381 4.27 0.00 0.00 3.84
385 386 2.939103 GACATTGTGTCACTAGCCCATC 59.061 50.000 4.27 0.00 46.22 3.51
386 387 2.991250 GACATTGTGTCACTAGCCCAT 58.009 47.619 4.27 0.00 46.22 4.00
387 388 2.472695 GACATTGTGTCACTAGCCCA 57.527 50.000 4.27 0.00 46.22 5.36
396 397 3.059597 CCAAAGTCAGTCGACATTGTGTC 60.060 47.826 19.50 5.04 45.20 3.67
397 398 2.872245 CCAAAGTCAGTCGACATTGTGT 59.128 45.455 19.50 0.00 45.20 3.72
398 399 2.224079 CCCAAAGTCAGTCGACATTGTG 59.776 50.000 19.50 7.29 45.20 3.33
399 400 2.158813 ACCCAAAGTCAGTCGACATTGT 60.159 45.455 19.50 0.00 45.20 2.71
400 401 2.224079 CACCCAAAGTCAGTCGACATTG 59.776 50.000 19.50 8.48 45.87 2.82
401 402 2.104111 TCACCCAAAGTCAGTCGACATT 59.896 45.455 19.50 3.93 45.23 2.71
402 403 1.691976 TCACCCAAAGTCAGTCGACAT 59.308 47.619 19.50 0.00 45.23 3.06
403 404 1.116308 TCACCCAAAGTCAGTCGACA 58.884 50.000 19.50 0.00 45.23 4.35
404 405 2.234300 TTCACCCAAAGTCAGTCGAC 57.766 50.000 7.70 7.70 42.95 4.20
405 406 4.039973 AGTTATTCACCCAAAGTCAGTCGA 59.960 41.667 0.00 0.00 0.00 4.20
406 407 4.315803 AGTTATTCACCCAAAGTCAGTCG 58.684 43.478 0.00 0.00 0.00 4.18
407 408 5.531287 ACAAGTTATTCACCCAAAGTCAGTC 59.469 40.000 0.00 0.00 0.00 3.51
408 409 5.299279 CACAAGTTATTCACCCAAAGTCAGT 59.701 40.000 0.00 0.00 0.00 3.41
409 410 5.278463 CCACAAGTTATTCACCCAAAGTCAG 60.278 44.000 0.00 0.00 0.00 3.51
410 411 4.582656 CCACAAGTTATTCACCCAAAGTCA 59.417 41.667 0.00 0.00 0.00 3.41
411 412 4.825085 TCCACAAGTTATTCACCCAAAGTC 59.175 41.667 0.00 0.00 0.00 3.01
425 426 1.817740 CGTTCATGGGGTCCACAAGTT 60.818 52.381 0.00 0.00 35.80 2.66
434 435 3.646162 TGCTAGATATTCGTTCATGGGGT 59.354 43.478 0.00 0.00 0.00 4.95
448 449 6.202762 CAGGAATAATGCGTTGTTGCTAGATA 59.797 38.462 19.09 0.00 35.50 1.98
468 469 5.807909 TCATTGATCAAGACATGACAGGAA 58.192 37.500 14.54 0.00 41.93 3.36
488 491 6.643388 TCTGTGTGCTTTGTATACTGATCAT 58.357 36.000 4.17 0.00 0.00 2.45
489 492 6.036577 TCTGTGTGCTTTGTATACTGATCA 57.963 37.500 4.17 0.00 0.00 2.92
490 493 6.968131 TTCTGTGTGCTTTGTATACTGATC 57.032 37.500 4.17 0.00 0.00 2.92
491 494 7.334090 AGATTCTGTGTGCTTTGTATACTGAT 58.666 34.615 4.17 0.00 0.00 2.90
492 495 6.701340 AGATTCTGTGTGCTTTGTATACTGA 58.299 36.000 4.17 0.00 0.00 3.41
494 497 7.986085 AAAGATTCTGTGTGCTTTGTATACT 57.014 32.000 4.17 0.00 0.00 2.12
495 498 8.936864 AGTAAAGATTCTGTGTGCTTTGTATAC 58.063 33.333 0.00 0.00 33.16 1.47
496 499 9.502091 AAGTAAAGATTCTGTGTGCTTTGTATA 57.498 29.630 0.00 0.00 33.16 1.47
497 500 7.986085 AGTAAAGATTCTGTGTGCTTTGTAT 57.014 32.000 0.00 0.00 33.16 2.29
498 501 7.639039 CAAGTAAAGATTCTGTGTGCTTTGTA 58.361 34.615 0.00 0.00 33.16 2.41
499 502 6.498304 CAAGTAAAGATTCTGTGTGCTTTGT 58.502 36.000 0.00 0.00 33.16 2.83
500 503 5.400485 GCAAGTAAAGATTCTGTGTGCTTTG 59.600 40.000 0.00 0.00 33.16 2.77
501 504 5.067674 TGCAAGTAAAGATTCTGTGTGCTTT 59.932 36.000 9.21 0.00 35.09 3.51
527 530 0.030638 TCAGCAACGAAAAGCCTTGC 59.969 50.000 0.00 0.00 40.55 4.01
569 572 6.458232 TTTTCTTTTTGAACAATCCGGAGA 57.542 33.333 11.34 0.00 33.88 3.71
600 603 1.134280 AGCTTCATTCCATGTCCGGAG 60.134 52.381 3.06 0.00 36.12 4.63
601 604 0.911769 AGCTTCATTCCATGTCCGGA 59.088 50.000 0.00 0.00 0.00 5.14
602 605 2.620251 TAGCTTCATTCCATGTCCGG 57.380 50.000 0.00 0.00 0.00 5.14
606 609 5.419788 TGCAGATTTTAGCTTCATTCCATGT 59.580 36.000 0.00 0.00 0.00 3.21
615 618 5.338365 CCTTGTCATGCAGATTTTAGCTTC 58.662 41.667 0.00 0.00 0.00 3.86
649 652 1.373812 GCCTGTTAACCCCTGACGT 59.626 57.895 2.48 0.00 0.00 4.34
659 662 5.565509 TCTGGATATTTGTGTGCCTGTTAA 58.434 37.500 0.00 0.00 0.00 2.01
661 664 4.032960 TCTGGATATTTGTGTGCCTGTT 57.967 40.909 0.00 0.00 0.00 3.16
662 665 3.719268 TCTGGATATTTGTGTGCCTGT 57.281 42.857 0.00 0.00 0.00 4.00
663 666 4.264253 TCTTCTGGATATTTGTGTGCCTG 58.736 43.478 0.00 0.00 0.00 4.85
666 669 4.265073 ACCTCTTCTGGATATTTGTGTGC 58.735 43.478 0.00 0.00 0.00 4.57
667 670 6.878317 TCTACCTCTTCTGGATATTTGTGTG 58.122 40.000 0.00 0.00 0.00 3.82
670 673 6.444704 TCCTCTACCTCTTCTGGATATTTGT 58.555 40.000 0.00 0.00 0.00 2.83
700 703 2.911594 GCTGCTAGCTACTGCCATC 58.088 57.895 17.23 0.00 38.45 3.51
756 764 6.621316 TTTGCCTCGTTAACAAGTATTTGA 57.379 33.333 4.81 0.00 37.73 2.69
761 769 3.059461 CGCTTTTGCCTCGTTAACAAGTA 60.059 43.478 6.39 0.00 43.93 2.24
856 872 2.456340 TGGGGACATATGGGAGAGAGAT 59.544 50.000 7.80 0.00 33.40 2.75
871 887 7.604164 GCAGCACATATATATACATATGGGGAC 59.396 40.741 13.81 0.32 40.97 4.46
900 916 3.983741 AGCCTATGTTCTAAGCTAAGCG 58.016 45.455 0.00 0.00 30.46 4.68
918 936 0.038892 TGTCGTCGGACTTACAAGCC 60.039 55.000 6.57 0.00 43.79 4.35
953 971 2.035961 GAGAACCAAGGGCCTTTTGTTC 59.964 50.000 32.14 32.14 35.07 3.18
954 972 2.039418 GAGAACCAAGGGCCTTTTGTT 58.961 47.619 23.92 23.92 0.00 2.83
955 973 1.217942 AGAGAACCAAGGGCCTTTTGT 59.782 47.619 18.16 14.22 0.00 2.83
956 974 2.001076 AGAGAACCAAGGGCCTTTTG 57.999 50.000 18.16 13.51 0.00 2.44
1003 1021 1.660607 CGATTGTCTCAATCCACCGTG 59.339 52.381 14.24 0.00 0.00 4.94
1012 1030 4.386867 GGTGATACCTCGATTGTCTCAA 57.613 45.455 5.31 0.00 34.73 3.02
1097 1118 7.408756 TTCTGAAATTCTGAAACATATGGGG 57.591 36.000 11.96 0.00 32.55 4.96
1098 1119 9.709495 TTTTTCTGAAATTCTGAAACATATGGG 57.291 29.630 21.96 0.00 41.72 4.00
1187 1210 1.068748 AGCGAATCAGCTTTGCAACAG 60.069 47.619 0.00 1.22 46.80 3.16
1328 1351 4.072131 GAGGTCAGACCAACTAAAATGCA 58.928 43.478 22.31 0.00 41.95 3.96
1335 1358 4.021104 CACATTCAGAGGTCAGACCAACTA 60.021 45.833 22.31 6.99 41.95 2.24
1337 1360 3.070018 CACATTCAGAGGTCAGACCAAC 58.930 50.000 22.31 14.54 41.95 3.77
1343 1366 5.019785 TCATGATCACATTCAGAGGTCAG 57.980 43.478 0.00 0.00 34.15 3.51
1393 1416 0.108041 CACCTGCATTCATTTGCCCC 60.108 55.000 0.00 0.00 42.06 5.80
1403 1426 3.313526 GCATCGTATTCTTCACCTGCATT 59.686 43.478 0.00 0.00 0.00 3.56
1404 1427 2.874701 GCATCGTATTCTTCACCTGCAT 59.125 45.455 0.00 0.00 0.00 3.96
1406 1429 1.599542 GGCATCGTATTCTTCACCTGC 59.400 52.381 0.00 0.00 0.00 4.85
1495 1518 1.126488 CTGGGATAGGCTTCTGCTGA 58.874 55.000 0.00 0.00 39.59 4.26
1597 1620 1.137404 CGGCCTTTTCATGCTTCCG 59.863 57.895 0.00 0.00 0.00 4.30
1706 1729 0.871722 TGTCCACGCTGTTTATGCAC 59.128 50.000 0.00 0.00 0.00 4.57
1733 1756 5.456548 TGCCATACTTGATTTGCCATATG 57.543 39.130 0.00 0.00 0.00 1.78
1753 1776 6.088085 GCAGTAGAATACACAAAACACATTGC 59.912 38.462 0.00 0.00 46.26 3.56
1765 1788 7.710907 TGACCATGATTTAGCAGTAGAATACAC 59.289 37.037 0.00 0.00 46.26 2.90
1777 1802 5.574443 GCTGAAAAGTTGACCATGATTTAGC 59.426 40.000 0.00 0.00 0.00 3.09
1789 1814 4.278858 CGAAACATTCGCTGAAAAGTTGA 58.721 39.130 0.00 0.00 46.97 3.18
1914 1939 4.642885 TGTTTTCCTCGTGAAACTTGGATT 59.357 37.500 3.03 0.00 42.56 3.01
2138 2163 3.068691 TCCTCCTTCTCCCACGCG 61.069 66.667 3.53 3.53 0.00 6.01
2253 2278 5.531122 TGTACCTGGATATGAGTGTTAGC 57.469 43.478 0.00 0.00 0.00 3.09
2263 2288 3.548770 TCGTCTCGTTGTACCTGGATAT 58.451 45.455 0.00 0.00 0.00 1.63
2264 2289 2.989909 TCGTCTCGTTGTACCTGGATA 58.010 47.619 0.00 0.00 0.00 2.59
2421 2454 3.691118 TGCAATTATGACAGCCAGAAGAC 59.309 43.478 0.00 0.00 28.50 3.01
2427 2460 1.766494 CCCTGCAATTATGACAGCCA 58.234 50.000 0.00 0.00 32.66 4.75
2434 2467 1.069022 CCGAATCGCCCTGCAATTATG 60.069 52.381 0.00 0.00 0.00 1.90
2435 2468 1.202758 TCCGAATCGCCCTGCAATTAT 60.203 47.619 0.00 0.00 0.00 1.28
2437 2470 1.077787 TCCGAATCGCCCTGCAATT 60.078 52.632 0.00 0.00 0.00 2.32
2447 2480 1.001815 GCTCTCTTCCTCTCCGAATCG 60.002 57.143 0.00 0.00 0.00 3.34
2453 2486 1.406751 GCCTTTGCTCTCTTCCTCTCC 60.407 57.143 0.00 0.00 33.53 3.71
2463 2496 2.046507 CTCCAGCGCCTTTGCTCT 60.047 61.111 2.29 0.00 45.23 4.09
2532 2565 2.125912 CTTGTCCTCCGCCGACAG 60.126 66.667 0.00 0.00 41.10 3.51
2540 2573 1.535896 GCGTTCCTTTTCTTGTCCTCC 59.464 52.381 0.00 0.00 0.00 4.30
2616 2649 2.149383 AGAAGCAGCCACAGGACCA 61.149 57.895 0.00 0.00 0.00 4.02
2656 2689 1.077663 ACAACCAGATTCTTGGCCCAT 59.922 47.619 0.00 0.00 42.18 4.00
2710 2743 5.424121 GCAATGTACTTCATTTAGGCGAT 57.576 39.130 0.00 0.00 43.33 4.58
2899 5292 6.387041 TCAAGATCAAATGATGGAGATTGC 57.613 37.500 0.00 0.00 34.37 3.56
2929 5322 2.603075 TAACCTTTGAATGCAGGCCT 57.397 45.000 0.00 0.00 32.79 5.19
2964 5357 3.793888 GGGTTACCCCGGCCTCTG 61.794 72.222 9.81 0.00 42.41 3.35
2996 5389 9.525409 CAGAAATCAGTCAAAATTTCACTTTCT 57.475 29.630 9.68 1.40 41.97 2.52
2997 5390 9.305925 ACAGAAATCAGTCAAAATTTCACTTTC 57.694 29.630 9.68 0.00 41.97 2.62
2998 5391 9.090692 CACAGAAATCAGTCAAAATTTCACTTT 57.909 29.630 9.68 0.00 41.97 2.66
2999 5392 7.223387 GCACAGAAATCAGTCAAAATTTCACTT 59.777 33.333 9.68 0.00 41.97 3.16
3000 5393 6.698766 GCACAGAAATCAGTCAAAATTTCACT 59.301 34.615 9.68 0.00 41.97 3.41
3001 5394 6.345250 CGCACAGAAATCAGTCAAAATTTCAC 60.345 38.462 9.68 0.00 41.97 3.18
3002 5395 5.686841 CGCACAGAAATCAGTCAAAATTTCA 59.313 36.000 9.68 0.00 41.97 2.69
3003 5396 5.914635 TCGCACAGAAATCAGTCAAAATTTC 59.085 36.000 0.00 0.00 40.56 2.17
3004 5397 5.830912 TCGCACAGAAATCAGTCAAAATTT 58.169 33.333 0.00 0.00 0.00 1.82
3005 5398 5.437289 TCGCACAGAAATCAGTCAAAATT 57.563 34.783 0.00 0.00 0.00 1.82
3006 5399 5.437289 TTCGCACAGAAATCAGTCAAAAT 57.563 34.783 0.00 0.00 35.61 1.82
3007 5400 4.891627 TTCGCACAGAAATCAGTCAAAA 57.108 36.364 0.00 0.00 35.61 2.44
3008 5401 4.891627 TTTCGCACAGAAATCAGTCAAA 57.108 36.364 0.00 0.00 43.35 2.69
3009 5402 4.789481 GCTTTTCGCACAGAAATCAGTCAA 60.789 41.667 0.00 0.00 46.98 3.18
3010 5403 3.303990 GCTTTTCGCACAGAAATCAGTCA 60.304 43.478 0.00 0.00 46.98 3.41
3011 5404 3.058639 AGCTTTTCGCACAGAAATCAGTC 60.059 43.478 0.00 0.00 46.98 3.51
3012 5405 2.880890 AGCTTTTCGCACAGAAATCAGT 59.119 40.909 0.00 0.00 46.98 3.41
3013 5406 3.231965 CAGCTTTTCGCACAGAAATCAG 58.768 45.455 0.00 0.00 46.98 2.90
3014 5407 2.030893 CCAGCTTTTCGCACAGAAATCA 60.031 45.455 0.00 0.00 46.98 2.57
3015 5408 2.226437 TCCAGCTTTTCGCACAGAAATC 59.774 45.455 0.00 0.00 46.98 2.17
3016 5409 2.229792 TCCAGCTTTTCGCACAGAAAT 58.770 42.857 0.00 0.00 46.98 2.17
3017 5410 1.674359 TCCAGCTTTTCGCACAGAAA 58.326 45.000 0.00 0.00 46.22 2.52
3018 5411 1.674359 TTCCAGCTTTTCGCACAGAA 58.326 45.000 0.00 0.00 42.61 3.02
3019 5412 1.333619 GTTTCCAGCTTTTCGCACAGA 59.666 47.619 0.00 0.00 42.61 3.41
3029 5422 0.179018 AGGCAAGACGTTTCCAGCTT 60.179 50.000 0.00 0.00 0.00 3.74
3370 5834 2.784347 TGACATCCGGTTTGTGCATTA 58.216 42.857 15.83 0.00 0.00 1.90
3479 5944 6.598064 GTGTGATAACCTTGGTGCTACTTATT 59.402 38.462 0.00 0.00 0.00 1.40
3534 5999 4.006319 AGTCTATGTTGAAAGAGCTTGGC 58.994 43.478 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.