Multiple sequence alignment - TraesCS1A01G056900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G056900 chr1A 100.000 2659 0 0 1 2659 36839018 36841676 0.000000e+00 4911.0
1 TraesCS1A01G056900 chr1A 92.308 39 3 0 2398 2436 493272904 493272942 3.700000e-04 56.5
2 TraesCS1A01G056900 chr1B 91.062 1723 102 26 38 1725 57711486 57713191 0.000000e+00 2281.0
3 TraesCS1A01G056900 chr1B 92.969 512 28 5 1723 2228 57713231 57713740 0.000000e+00 739.0
4 TraesCS1A01G056900 chr1B 85.764 288 30 9 2157 2439 641608245 641607964 7.200000e-76 294.0
5 TraesCS1A01G056900 chr1D 91.696 1120 48 11 630 1725 37897108 37898206 0.000000e+00 1511.0
6 TraesCS1A01G056900 chr1D 93.175 630 36 7 1 630 37893504 37894126 0.000000e+00 918.0
7 TraesCS1A01G056900 chr1D 92.857 406 23 5 1826 2228 37910222 37910624 3.810000e-163 584.0
8 TraesCS1A01G056900 chr1D 96.078 102 3 1 1723 1824 37898246 37898346 5.890000e-37 165.0
9 TraesCS1A01G056900 chr2A 85.809 303 32 10 2141 2437 279056120 279056417 7.150000e-81 311.0
10 TraesCS1A01G056900 chr6A 85.246 305 38 6 2139 2439 475430929 475431230 9.250000e-80 307.0
11 TraesCS1A01G056900 chr6A 73.856 306 68 9 2141 2439 350839682 350839382 7.780000e-21 111.0
12 TraesCS1A01G056900 chr4A 84.790 309 40 6 2135 2439 176859812 176860117 1.200000e-78 303.0
13 TraesCS1A01G056900 chr4B 84.768 302 39 6 2142 2439 86136824 86137122 2.000000e-76 296.0
14 TraesCS1A01G056900 chr2D 85.119 168 22 3 2139 2304 488235991 488236157 4.550000e-38 169.0
15 TraesCS1A01G056900 chr2B 83.648 159 23 3 2139 2295 572592591 572592748 2.130000e-31 147.0
16 TraesCS1A01G056900 chr3D 73.941 307 67 11 2140 2439 99746554 99746854 7.780000e-21 111.0
17 TraesCS1A01G056900 chr7B 89.655 58 5 1 65 122 587903355 587903411 3.670000e-09 73.1
18 TraesCS1A01G056900 chr7D 87.931 58 6 1 65 122 544366613 544366669 1.710000e-07 67.6
19 TraesCS1A01G056900 chr6B 100.000 30 0 0 371 400 658408435 658408406 3.700000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G056900 chr1A 36839018 36841676 2658 False 4911.000000 4911 100.000000 1 2659 1 chr1A.!!$F1 2658
1 TraesCS1A01G056900 chr1B 57711486 57713740 2254 False 1510.000000 2281 92.015500 38 2228 2 chr1B.!!$F1 2190
2 TraesCS1A01G056900 chr1D 37893504 37898346 4842 False 864.666667 1511 93.649667 1 1824 3 chr1D.!!$F2 1823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 1.091771 GCATATCCGTGCAGCACTGT 61.092 55.0 23.15 11.08 44.43 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 5107 0.038892 TTGCTCCGTTCCGTCTACAC 60.039 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.568620 ACTAGTGGGATGTCTTTTTCTGT 57.431 39.130 0.00 0.00 0.00 3.41
96 97 2.938838 ACCTAAGAGAGTGATCTCCCG 58.061 52.381 1.71 0.00 41.26 5.14
112 113 6.719829 TGATCTCCCGCTACTTCTAATTATCA 59.280 38.462 0.00 0.00 0.00 2.15
145 146 7.221452 GCATACTTCCACATCATCAAAATTGTC 59.779 37.037 0.00 0.00 0.00 3.18
248 249 7.309805 GCACTAGTGGATTCTAAATGGGTTTTT 60.310 37.037 23.95 0.00 0.00 1.94
380 381 1.091771 GCATATCCGTGCAGCACTGT 61.092 55.000 23.15 11.08 44.43 3.55
405 406 4.099419 ACATCATCAGTTCATGCATGCAAT 59.901 37.500 26.68 7.77 0.00 3.56
424 425 7.236674 TGCAATTCATCAGTTGTTTTCTTTG 57.763 32.000 0.00 0.00 0.00 2.77
619 621 1.738830 AACAACGTGCGGGGTATCG 60.739 57.895 0.00 0.00 0.00 2.92
633 3617 3.243201 GGGGTATCGTCTACTTAACGGTG 60.243 52.174 0.00 0.00 40.45 4.94
640 3624 4.094887 TCGTCTACTTAACGGTGGACATAC 59.905 45.833 10.57 0.00 44.34 2.39
644 3628 4.811969 ACTTAACGGTGGACATACATCA 57.188 40.909 0.00 0.00 0.00 3.07
646 3630 2.004583 AACGGTGGACATACATCACG 57.995 50.000 0.00 0.00 32.65 4.35
874 3869 1.207339 CGCATGCACGCTCAAAAGA 59.793 52.632 19.57 0.00 0.00 2.52
955 3950 4.267536 TCTAAGGAGAATTTCGGACGAGA 58.732 43.478 0.00 0.00 0.00 4.04
1012 4007 3.179443 ACCATGTTATGTACTGCTCGG 57.821 47.619 0.00 0.00 0.00 4.63
1075 4074 0.829990 GGGAGCTGAGAGGAAGAAGG 59.170 60.000 0.00 0.00 0.00 3.46
1095 4094 1.410224 GGGAAAATGGGCTCCAGTAGG 60.410 57.143 0.41 0.00 36.75 3.18
1103 4102 0.540454 GGCTCCAGTAGGGTTGGTAC 59.460 60.000 0.00 0.00 37.02 3.34
1177 4176 1.689892 GGTTGTTTCCCCTGTTCCCAA 60.690 52.381 0.00 0.00 0.00 4.12
1190 4189 5.436175 CCTGTTCCCAACCTTTTGATTTTT 58.564 37.500 0.00 0.00 34.24 1.94
1197 4196 4.273235 CCAACCTTTTGATTTTTCTGTGCC 59.727 41.667 0.00 0.00 34.24 5.01
1199 4203 5.294734 ACCTTTTGATTTTTCTGTGCCAT 57.705 34.783 0.00 0.00 0.00 4.40
1201 4205 6.458210 ACCTTTTGATTTTTCTGTGCCATAG 58.542 36.000 0.00 0.00 0.00 2.23
1253 4261 8.753497 AAACTTTTAACTTGGAGATCTTCTGT 57.247 30.769 1.86 0.00 0.00 3.41
1278 4287 0.914417 TCTTTGTAGGAGGCAGGGGG 60.914 60.000 0.00 0.00 0.00 5.40
1343 4363 0.920763 TCCATCCATTCAGGCCCTGT 60.921 55.000 11.27 0.00 37.29 4.00
1348 4368 1.922447 TCCATTCAGGCCCTGTACAAT 59.078 47.619 11.27 0.06 37.29 2.71
1365 4390 8.926710 CCTGTACAATACTTGTTTGAGAACTAG 58.073 37.037 0.00 0.00 42.22 2.57
1379 4417 9.950680 GTTTGAGAACTAGATGATTTGTTTGAA 57.049 29.630 0.00 0.00 32.91 2.69
1380 4418 9.950680 TTTGAGAACTAGATGATTTGTTTGAAC 57.049 29.630 0.00 0.00 0.00 3.18
1381 4419 8.908786 TGAGAACTAGATGATTTGTTTGAACT 57.091 30.769 0.00 0.00 0.00 3.01
1382 4420 9.342308 TGAGAACTAGATGATTTGTTTGAACTT 57.658 29.630 0.00 0.00 0.00 2.66
1384 4422 9.956720 AGAACTAGATGATTTGTTTGAACTTTG 57.043 29.630 0.00 0.00 0.00 2.77
1385 4423 9.950680 GAACTAGATGATTTGTTTGAACTTTGA 57.049 29.630 0.00 0.00 0.00 2.69
1387 4425 9.736023 ACTAGATGATTTGTTTGAACTTTGAAC 57.264 29.630 0.00 0.00 0.00 3.18
1388 4426 9.956720 CTAGATGATTTGTTTGAACTTTGAACT 57.043 29.630 0.00 0.00 0.00 3.01
1390 4428 9.736023 AGATGATTTGTTTGAACTTTGAACTAC 57.264 29.630 0.00 0.00 0.00 2.73
1391 4429 9.515020 GATGATTTGTTTGAACTTTGAACTACA 57.485 29.630 0.00 0.00 0.00 2.74
1392 4430 9.868277 ATGATTTGTTTGAACTTTGAACTACAA 57.132 25.926 0.00 0.00 36.65 2.41
1393 4431 9.352784 TGATTTGTTTGAACTTTGAACTACAAG 57.647 29.630 0.00 0.00 39.77 3.16
1394 4432 9.353999 GATTTGTTTGAACTTTGAACTACAAGT 57.646 29.630 0.00 0.00 39.77 3.16
1395 4433 9.705290 ATTTGTTTGAACTTTGAACTACAAGTT 57.295 25.926 0.00 0.00 41.95 2.66
1396 4434 8.514136 TTGTTTGAACTTTGAACTACAAGTTG 57.486 30.769 0.00 0.00 38.80 3.16
1397 4435 7.877003 TGTTTGAACTTTGAACTACAAGTTGA 58.123 30.769 10.54 0.00 38.80 3.18
1398 4436 7.806014 TGTTTGAACTTTGAACTACAAGTTGAC 59.194 33.333 10.54 0.59 38.80 3.18
1482 4525 9.778741 TTGGAGCTATCTTTATCACGAAATAAT 57.221 29.630 0.00 0.00 0.00 1.28
1689 4732 1.742140 CTGCTCTGCTCCTGCACAG 60.742 63.158 0.00 0.00 45.31 3.66
1702 4745 6.212187 TGCTCCTGCACAGAGTCATATATATT 59.788 38.462 10.03 0.00 45.31 1.28
1703 4746 7.102346 GCTCCTGCACAGAGTCATATATATTT 58.898 38.462 10.03 0.00 39.41 1.40
1771 4856 3.168528 ACTGGTTCGGGCACTGGT 61.169 61.111 0.00 0.00 33.92 4.00
1891 4982 6.017605 ACTCCATTCAGCGATGAATTACAATC 60.018 38.462 25.33 0.00 36.48 2.67
1898 4989 7.142680 TCAGCGATGAATTACAATCGTATACA 58.857 34.615 0.00 0.00 38.62 2.29
2007 5098 0.389948 AGAGGCTTTTGTACTCGGCG 60.390 55.000 0.00 0.00 36.40 6.46
2016 5107 4.868450 TTTGTACTCGGCGAATAAATGG 57.132 40.909 12.13 0.00 0.00 3.16
2067 5158 4.588528 TGCTTTCCAAAGGCTTTTGTATCT 59.411 37.500 18.70 0.00 41.68 1.98
2068 5159 4.925646 GCTTTCCAAAGGCTTTTGTATCTG 59.074 41.667 18.70 4.63 41.68 2.90
2087 5178 6.699575 ATCTGGCAAATAAATGGTGTAGAC 57.300 37.500 0.00 0.00 0.00 2.59
2106 5197 2.146342 ACGGAACAGAGCAAACATCAG 58.854 47.619 0.00 0.00 0.00 2.90
2115 5206 3.823304 AGAGCAAACATCAGGTTCTTTCC 59.177 43.478 0.00 0.00 39.29 3.13
2118 5209 3.569701 GCAAACATCAGGTTCTTTCCAGA 59.430 43.478 0.00 0.00 39.29 3.86
2132 5223 4.102524 TCTTTCCAGAGGCTTTTGTACTCA 59.897 41.667 0.00 0.00 33.76 3.41
2158 5249 6.758416 GCAAATAAGGGCTCCTTTTATTCAAG 59.242 38.462 11.15 3.51 41.69 3.02
2166 5257 5.402398 GCTCCTTTTATTCAAGCGATTTGT 58.598 37.500 0.00 0.00 38.01 2.83
2171 5262 8.836413 TCCTTTTATTCAAGCGATTTGTATAGG 58.164 33.333 0.00 0.00 38.01 2.57
2179 5270 8.275015 TCAAGCGATTTGTATAGGAATTTTGA 57.725 30.769 0.00 0.00 38.01 2.69
2233 5324 9.811995 ATGTTGATTGTTTGATTCATAGGATTG 57.188 29.630 0.00 0.00 0.00 2.67
2234 5325 9.022884 TGTTGATTGTTTGATTCATAGGATTGA 57.977 29.630 0.00 0.00 0.00 2.57
2235 5326 9.859427 GTTGATTGTTTGATTCATAGGATTGAA 57.141 29.630 0.00 0.00 39.77 2.69
2312 5403 9.985730 TTTTAGCATTCATTCAAATCTCTTTGT 57.014 25.926 0.00 0.00 42.02 2.83
2316 5407 9.017509 AGCATTCATTCAAATCTCTTTGTAAGA 57.982 29.630 0.00 0.00 42.02 2.10
2317 5408 9.630098 GCATTCATTCAAATCTCTTTGTAAGAA 57.370 29.630 0.00 0.00 42.02 2.52
2321 5412 9.745018 TCATTCAAATCTCTTTGTAAGAATCCT 57.255 29.630 0.00 0.00 42.02 3.24
2350 5441 6.542574 TTTTCAATGATGCCATCAAACAAC 57.457 33.333 12.08 0.00 43.50 3.32
2351 5442 4.191033 TCAATGATGCCATCAAACAACC 57.809 40.909 12.08 0.00 43.50 3.77
2352 5443 3.055963 TCAATGATGCCATCAAACAACCC 60.056 43.478 12.08 0.00 43.50 4.11
2353 5444 2.006805 TGATGCCATCAAACAACCCA 57.993 45.000 4.55 0.00 36.11 4.51
2354 5445 2.323599 TGATGCCATCAAACAACCCAA 58.676 42.857 4.55 0.00 36.11 4.12
2355 5446 2.702478 TGATGCCATCAAACAACCCAAA 59.298 40.909 4.55 0.00 36.11 3.28
2356 5447 3.135348 TGATGCCATCAAACAACCCAAAA 59.865 39.130 4.55 0.00 36.11 2.44
2357 5448 3.853355 TGCCATCAAACAACCCAAAAT 57.147 38.095 0.00 0.00 0.00 1.82
2358 5449 3.737850 TGCCATCAAACAACCCAAAATC 58.262 40.909 0.00 0.00 0.00 2.17
2359 5450 3.135348 TGCCATCAAACAACCCAAAATCA 59.865 39.130 0.00 0.00 0.00 2.57
2360 5451 4.202440 TGCCATCAAACAACCCAAAATCAT 60.202 37.500 0.00 0.00 0.00 2.45
2361 5452 5.012458 TGCCATCAAACAACCCAAAATCATA 59.988 36.000 0.00 0.00 0.00 2.15
2362 5453 6.114767 GCCATCAAACAACCCAAAATCATAT 58.885 36.000 0.00 0.00 0.00 1.78
2363 5454 7.093156 TGCCATCAAACAACCCAAAATCATATA 60.093 33.333 0.00 0.00 0.00 0.86
2364 5455 7.439056 GCCATCAAACAACCCAAAATCATATAG 59.561 37.037 0.00 0.00 0.00 1.31
2365 5456 7.927629 CCATCAAACAACCCAAAATCATATAGG 59.072 37.037 0.00 0.00 0.00 2.57
2366 5457 8.694540 CATCAAACAACCCAAAATCATATAGGA 58.305 33.333 0.00 0.00 0.00 2.94
2367 5458 8.837099 TCAAACAACCCAAAATCATATAGGAT 57.163 30.769 0.00 0.00 0.00 3.24
2368 5459 9.265862 TCAAACAACCCAAAATCATATAGGATT 57.734 29.630 6.80 6.80 39.11 3.01
2369 5460 9.316730 CAAACAACCCAAAATCATATAGGATTG 57.683 33.333 13.04 3.86 37.55 2.67
2370 5461 8.837099 AACAACCCAAAATCATATAGGATTGA 57.163 30.769 13.04 0.00 37.55 2.57
2371 5462 8.469309 ACAACCCAAAATCATATAGGATTGAG 57.531 34.615 13.04 8.74 37.55 3.02
2372 5463 8.281531 ACAACCCAAAATCATATAGGATTGAGA 58.718 33.333 13.04 0.00 37.55 3.27
2373 5464 9.305555 CAACCCAAAATCATATAGGATTGAGAT 57.694 33.333 13.04 0.00 37.55 2.75
2374 5465 8.874744 ACCCAAAATCATATAGGATTGAGATG 57.125 34.615 13.04 9.84 37.55 2.90
2375 5466 8.672329 ACCCAAAATCATATAGGATTGAGATGA 58.328 33.333 13.04 0.00 37.55 2.92
2376 5467 8.954350 CCCAAAATCATATAGGATTGAGATGAC 58.046 37.037 13.04 0.00 37.55 3.06
2377 5468 8.954350 CCAAAATCATATAGGATTGAGATGACC 58.046 37.037 13.04 0.00 37.55 4.02
2378 5469 9.511272 CAAAATCATATAGGATTGAGATGACCA 57.489 33.333 13.04 0.00 37.55 4.02
2382 5473 9.948747 ATCATATAGGATTGAGATGACCATAGA 57.051 33.333 0.00 0.00 29.75 1.98
2383 5474 9.774071 TCATATAGGATTGAGATGACCATAGAA 57.226 33.333 0.00 0.00 0.00 2.10
2387 5478 7.630005 AGGATTGAGATGACCATAGAATTCT 57.370 36.000 13.56 13.56 0.00 2.40
2388 5479 8.733092 AGGATTGAGATGACCATAGAATTCTA 57.267 34.615 17.32 17.32 0.00 2.10
2389 5480 9.163894 AGGATTGAGATGACCATAGAATTCTAA 57.836 33.333 18.79 2.86 31.39 2.10
2390 5481 9.956640 GGATTGAGATGACCATAGAATTCTAAT 57.043 33.333 18.79 7.70 31.39 1.73
2392 5483 9.956640 ATTGAGATGACCATAGAATTCTAATCC 57.043 33.333 18.79 10.76 31.39 3.01
2393 5484 8.733092 TGAGATGACCATAGAATTCTAATCCT 57.267 34.615 18.79 9.90 31.39 3.24
2394 5485 9.828691 TGAGATGACCATAGAATTCTAATCCTA 57.171 33.333 18.79 6.87 31.39 2.94
2410 5501 9.555727 TTCTAATCCTATGTTTTTCTATTCCCG 57.444 33.333 0.00 0.00 0.00 5.14
2411 5502 8.711170 TCTAATCCTATGTTTTTCTATTCCCGT 58.289 33.333 0.00 0.00 0.00 5.28
2412 5503 7.568199 AATCCTATGTTTTTCTATTCCCGTG 57.432 36.000 0.00 0.00 0.00 4.94
2413 5504 6.057321 TCCTATGTTTTTCTATTCCCGTGT 57.943 37.500 0.00 0.00 0.00 4.49
2414 5505 6.478129 TCCTATGTTTTTCTATTCCCGTGTT 58.522 36.000 0.00 0.00 0.00 3.32
2415 5506 6.943718 TCCTATGTTTTTCTATTCCCGTGTTT 59.056 34.615 0.00 0.00 0.00 2.83
2416 5507 7.449086 TCCTATGTTTTTCTATTCCCGTGTTTT 59.551 33.333 0.00 0.00 0.00 2.43
2417 5508 8.085909 CCTATGTTTTTCTATTCCCGTGTTTTT 58.914 33.333 0.00 0.00 0.00 1.94
2420 5511 9.819267 ATGTTTTTCTATTCCCGTGTTTTTAAA 57.181 25.926 0.00 0.00 0.00 1.52
2421 5512 9.649167 TGTTTTTCTATTCCCGTGTTTTTAAAA 57.351 25.926 0.00 0.00 0.00 1.52
2424 5515 9.478768 TTTTCTATTCCCGTGTTTTTAAAATCC 57.521 29.630 0.55 0.00 0.00 3.01
2425 5516 7.160547 TCTATTCCCGTGTTTTTAAAATCCC 57.839 36.000 0.55 0.00 0.00 3.85
2426 5517 5.810080 ATTCCCGTGTTTTTAAAATCCCA 57.190 34.783 0.55 0.00 0.00 4.37
2427 5518 4.587584 TCCCGTGTTTTTAAAATCCCAC 57.412 40.909 0.55 8.29 0.00 4.61
2428 5519 3.004524 TCCCGTGTTTTTAAAATCCCACG 59.995 43.478 25.59 25.59 43.69 4.94
2429 5520 3.004524 CCCGTGTTTTTAAAATCCCACGA 59.995 43.478 29.84 6.15 46.09 4.35
2430 5521 4.499357 CCCGTGTTTTTAAAATCCCACGAA 60.499 41.667 29.84 5.57 46.09 3.85
2431 5522 5.224135 CCGTGTTTTTAAAATCCCACGAAT 58.776 37.500 29.84 0.00 46.09 3.34
2432 5523 5.343860 CCGTGTTTTTAAAATCCCACGAATC 59.656 40.000 29.84 9.97 46.09 2.52
2433 5524 5.915758 CGTGTTTTTAAAATCCCACGAATCA 59.084 36.000 27.03 1.02 46.09 2.57
2434 5525 6.418226 CGTGTTTTTAAAATCCCACGAATCAA 59.582 34.615 27.03 0.85 46.09 2.57
2435 5526 7.043325 CGTGTTTTTAAAATCCCACGAATCAAA 60.043 33.333 27.03 0.50 46.09 2.69
2436 5527 8.272866 GTGTTTTTAAAATCCCACGAATCAAAG 58.727 33.333 0.55 0.00 0.00 2.77
2437 5528 8.198109 TGTTTTTAAAATCCCACGAATCAAAGA 58.802 29.630 0.55 0.00 0.00 2.52
2438 5529 8.699749 GTTTTTAAAATCCCACGAATCAAAGAG 58.300 33.333 0.55 0.00 0.00 2.85
2439 5530 7.753309 TTTAAAATCCCACGAATCAAAGAGA 57.247 32.000 0.00 0.00 0.00 3.10
2440 5531 7.753309 TTAAAATCCCACGAATCAAAGAGAA 57.247 32.000 0.00 0.00 0.00 2.87
2441 5532 6.840780 AAAATCCCACGAATCAAAGAGAAT 57.159 33.333 0.00 0.00 0.00 2.40
2442 5533 5.824904 AATCCCACGAATCAAAGAGAATG 57.175 39.130 0.00 0.00 0.00 2.67
2443 5534 3.609853 TCCCACGAATCAAAGAGAATGG 58.390 45.455 0.00 0.00 0.00 3.16
2444 5535 3.009033 TCCCACGAATCAAAGAGAATGGT 59.991 43.478 0.00 0.00 0.00 3.55
2445 5536 3.127548 CCCACGAATCAAAGAGAATGGTG 59.872 47.826 0.00 0.00 0.00 4.17
2446 5537 3.753272 CCACGAATCAAAGAGAATGGTGT 59.247 43.478 0.00 0.00 0.00 4.16
2447 5538 4.935205 CCACGAATCAAAGAGAATGGTGTA 59.065 41.667 0.00 0.00 0.00 2.90
2448 5539 5.063944 CCACGAATCAAAGAGAATGGTGTAG 59.936 44.000 0.00 0.00 0.00 2.74
2449 5540 5.869344 CACGAATCAAAGAGAATGGTGTAGA 59.131 40.000 0.00 0.00 0.00 2.59
2450 5541 5.869888 ACGAATCAAAGAGAATGGTGTAGAC 59.130 40.000 0.00 0.00 0.00 2.59
2451 5542 5.869344 CGAATCAAAGAGAATGGTGTAGACA 59.131 40.000 0.00 0.00 0.00 3.41
2452 5543 6.035435 CGAATCAAAGAGAATGGTGTAGACAG 59.965 42.308 0.00 0.00 0.00 3.51
2453 5544 6.611613 ATCAAAGAGAATGGTGTAGACAGA 57.388 37.500 0.00 0.00 0.00 3.41
2454 5545 6.419484 TCAAAGAGAATGGTGTAGACAGAA 57.581 37.500 0.00 0.00 0.00 3.02
2455 5546 7.009179 TCAAAGAGAATGGTGTAGACAGAAT 57.991 36.000 0.00 0.00 0.00 2.40
2456 5547 7.453393 TCAAAGAGAATGGTGTAGACAGAATT 58.547 34.615 0.00 0.00 0.00 2.17
2457 5548 7.388776 TCAAAGAGAATGGTGTAGACAGAATTG 59.611 37.037 0.00 0.00 0.00 2.32
2458 5549 6.611613 AGAGAATGGTGTAGACAGAATTGA 57.388 37.500 0.00 0.00 0.00 2.57
2459 5550 6.638610 AGAGAATGGTGTAGACAGAATTGAG 58.361 40.000 0.00 0.00 0.00 3.02
2460 5551 5.181748 AGAATGGTGTAGACAGAATTGAGC 58.818 41.667 0.00 0.00 0.00 4.26
2461 5552 4.558226 ATGGTGTAGACAGAATTGAGCA 57.442 40.909 0.00 0.00 0.00 4.26
2462 5553 4.350368 TGGTGTAGACAGAATTGAGCAA 57.650 40.909 0.00 0.00 0.00 3.91
2463 5554 4.713553 TGGTGTAGACAGAATTGAGCAAA 58.286 39.130 0.00 0.00 0.00 3.68
2464 5555 4.515191 TGGTGTAGACAGAATTGAGCAAAC 59.485 41.667 0.00 0.00 0.00 2.93
2465 5556 4.515191 GGTGTAGACAGAATTGAGCAAACA 59.485 41.667 0.00 0.00 0.00 2.83
2466 5557 5.182001 GGTGTAGACAGAATTGAGCAAACAT 59.818 40.000 0.00 0.00 0.00 2.71
2467 5558 6.310197 GTGTAGACAGAATTGAGCAAACATC 58.690 40.000 0.00 0.00 0.00 3.06
2468 5559 5.997129 TGTAGACAGAATTGAGCAAACATCA 59.003 36.000 0.00 0.00 0.00 3.07
2469 5560 6.486320 TGTAGACAGAATTGAGCAAACATCAA 59.514 34.615 0.00 0.00 40.72 2.57
2470 5561 6.010294 AGACAGAATTGAGCAAACATCAAG 57.990 37.500 0.00 0.00 39.86 3.02
2471 5562 5.533903 AGACAGAATTGAGCAAACATCAAGT 59.466 36.000 0.00 0.00 39.86 3.16
2472 5563 5.526115 ACAGAATTGAGCAAACATCAAGTG 58.474 37.500 0.00 0.00 39.86 3.16
2473 5564 4.384846 CAGAATTGAGCAAACATCAAGTGC 59.615 41.667 0.00 0.00 39.86 4.40
2478 5569 3.375782 AGCAAACATCAAGTGCTTTCC 57.624 42.857 0.00 0.00 46.25 3.13
2479 5570 2.694628 AGCAAACATCAAGTGCTTTCCA 59.305 40.909 0.00 0.00 46.25 3.53
2480 5571 3.054878 GCAAACATCAAGTGCTTTCCAG 58.945 45.455 0.00 0.00 35.36 3.86
2481 5572 3.243501 GCAAACATCAAGTGCTTTCCAGA 60.244 43.478 0.00 0.00 35.36 3.86
2482 5573 4.543692 CAAACATCAAGTGCTTTCCAGAG 58.456 43.478 0.00 0.00 0.00 3.35
2483 5574 2.787994 ACATCAAGTGCTTTCCAGAGG 58.212 47.619 0.00 0.00 0.00 3.69
2484 5575 1.471684 CATCAAGTGCTTTCCAGAGGC 59.528 52.381 0.00 0.00 0.00 4.70
2485 5576 0.767375 TCAAGTGCTTTCCAGAGGCT 59.233 50.000 0.00 0.00 0.00 4.58
2486 5577 1.143684 TCAAGTGCTTTCCAGAGGCTT 59.856 47.619 0.00 0.00 0.00 4.35
2487 5578 1.959282 CAAGTGCTTTCCAGAGGCTTT 59.041 47.619 0.00 0.00 0.00 3.51
2488 5579 2.363359 CAAGTGCTTTCCAGAGGCTTTT 59.637 45.455 0.00 0.00 0.00 2.27
2489 5580 1.959282 AGTGCTTTCCAGAGGCTTTTG 59.041 47.619 0.00 0.00 0.00 2.44
2490 5581 1.683385 GTGCTTTCCAGAGGCTTTTGT 59.317 47.619 0.00 0.00 0.00 2.83
2491 5582 2.884639 GTGCTTTCCAGAGGCTTTTGTA 59.115 45.455 0.00 0.00 0.00 2.41
2492 5583 2.884639 TGCTTTCCAGAGGCTTTTGTAC 59.115 45.455 0.00 0.00 0.00 2.90
2493 5584 2.884639 GCTTTCCAGAGGCTTTTGTACA 59.115 45.455 0.00 0.00 0.00 2.90
2494 5585 3.507622 GCTTTCCAGAGGCTTTTGTACAT 59.492 43.478 0.00 0.00 0.00 2.29
2495 5586 4.616835 GCTTTCCAGAGGCTTTTGTACATG 60.617 45.833 0.00 0.00 0.00 3.21
2496 5587 3.071874 TCCAGAGGCTTTTGTACATGG 57.928 47.619 0.00 0.00 0.00 3.66
2497 5588 1.474077 CCAGAGGCTTTTGTACATGGC 59.526 52.381 0.00 2.94 0.00 4.40
2498 5589 2.440409 CAGAGGCTTTTGTACATGGCT 58.560 47.619 16.08 16.08 38.03 4.75
2499 5590 2.821969 CAGAGGCTTTTGTACATGGCTT 59.178 45.455 16.82 9.53 35.46 4.35
2500 5591 4.009675 CAGAGGCTTTTGTACATGGCTTA 58.990 43.478 16.82 0.00 35.46 3.09
2501 5592 4.641989 CAGAGGCTTTTGTACATGGCTTAT 59.358 41.667 16.82 9.46 35.46 1.73
2502 5593 4.641989 AGAGGCTTTTGTACATGGCTTATG 59.358 41.667 16.82 0.84 42.68 1.90
2503 5594 3.701040 AGGCTTTTGTACATGGCTTATGG 59.299 43.478 12.17 0.00 41.25 2.74
2504 5595 3.447229 GGCTTTTGTACATGGCTTATGGT 59.553 43.478 0.00 0.00 41.25 3.55
2505 5596 4.423732 GCTTTTGTACATGGCTTATGGTG 58.576 43.478 0.00 0.00 41.25 4.17
2506 5597 4.423732 CTTTTGTACATGGCTTATGGTGC 58.576 43.478 0.00 0.00 41.25 5.01
2507 5598 2.797177 TGTACATGGCTTATGGTGCA 57.203 45.000 0.00 0.00 41.25 4.57
2508 5599 3.078891 TGTACATGGCTTATGGTGCAA 57.921 42.857 0.00 0.00 41.25 4.08
2509 5600 3.425659 TGTACATGGCTTATGGTGCAAA 58.574 40.909 0.00 0.00 41.25 3.68
2510 5601 3.192422 TGTACATGGCTTATGGTGCAAAC 59.808 43.478 0.00 0.00 41.25 2.93
2511 5602 1.202114 ACATGGCTTATGGTGCAAACG 59.798 47.619 0.00 0.00 41.25 3.60
2512 5603 0.817013 ATGGCTTATGGTGCAAACGG 59.183 50.000 0.00 0.00 0.00 4.44
2513 5604 0.250945 TGGCTTATGGTGCAAACGGA 60.251 50.000 0.00 0.00 0.00 4.69
2514 5605 0.451783 GGCTTATGGTGCAAACGGAG 59.548 55.000 0.00 0.00 0.00 4.63
2515 5606 0.179163 GCTTATGGTGCAAACGGAGC 60.179 55.000 0.00 0.00 0.00 4.70
2516 5607 1.164411 CTTATGGTGCAAACGGAGCA 58.836 50.000 0.00 0.00 40.19 4.26
2517 5608 1.539388 CTTATGGTGCAAACGGAGCAA 59.461 47.619 0.00 0.00 44.64 3.91
2518 5609 1.610363 TATGGTGCAAACGGAGCAAA 58.390 45.000 0.00 0.00 44.64 3.68
2519 5610 0.031994 ATGGTGCAAACGGAGCAAAC 59.968 50.000 0.00 0.00 44.64 2.93
2520 5611 1.315981 TGGTGCAAACGGAGCAAACA 61.316 50.000 0.00 1.41 44.64 2.83
2521 5612 0.031994 GGTGCAAACGGAGCAAACAT 59.968 50.000 0.00 0.00 44.64 2.71
2522 5613 1.408422 GTGCAAACGGAGCAAACATC 58.592 50.000 0.00 0.00 44.64 3.06
2523 5614 1.028130 TGCAAACGGAGCAAACATCA 58.972 45.000 0.00 0.00 39.39 3.07
2524 5615 1.406898 TGCAAACGGAGCAAACATCAA 59.593 42.857 0.00 0.00 39.39 2.57
2525 5616 2.053627 GCAAACGGAGCAAACATCAAG 58.946 47.619 0.00 0.00 0.00 3.02
2526 5617 2.664916 CAAACGGAGCAAACATCAAGG 58.335 47.619 0.00 0.00 0.00 3.61
2527 5618 2.270352 AACGGAGCAAACATCAAGGA 57.730 45.000 0.00 0.00 0.00 3.36
2528 5619 1.523758 ACGGAGCAAACATCAAGGAC 58.476 50.000 0.00 0.00 0.00 3.85
2529 5620 1.202758 ACGGAGCAAACATCAAGGACA 60.203 47.619 0.00 0.00 0.00 4.02
2530 5621 1.197721 CGGAGCAAACATCAAGGACAC 59.802 52.381 0.00 0.00 0.00 3.67
2531 5622 1.541588 GGAGCAAACATCAAGGACACC 59.458 52.381 0.00 0.00 0.00 4.16
2532 5623 2.229792 GAGCAAACATCAAGGACACCA 58.770 47.619 0.00 0.00 0.00 4.17
2533 5624 1.956477 AGCAAACATCAAGGACACCAC 59.044 47.619 0.00 0.00 0.00 4.16
2534 5625 1.334960 GCAAACATCAAGGACACCACG 60.335 52.381 0.00 0.00 0.00 4.94
2535 5626 1.946768 CAAACATCAAGGACACCACGT 59.053 47.619 0.00 0.00 0.00 4.49
2536 5627 1.593196 AACATCAAGGACACCACGTG 58.407 50.000 9.08 9.08 39.75 4.49
2545 5636 1.441729 ACACCACGTGTCACAGAGG 59.558 57.895 15.65 6.74 43.92 3.69
2546 5637 1.956170 CACCACGTGTCACAGAGGC 60.956 63.158 15.65 0.00 0.00 4.70
2547 5638 2.134287 ACCACGTGTCACAGAGGCT 61.134 57.895 15.65 0.00 0.00 4.58
2548 5639 1.069765 CCACGTGTCACAGAGGCTT 59.930 57.895 15.65 0.00 0.00 4.35
2549 5640 0.532862 CCACGTGTCACAGAGGCTTT 60.533 55.000 15.65 0.00 0.00 3.51
2550 5641 0.583438 CACGTGTCACAGAGGCTTTG 59.417 55.000 7.58 3.08 0.00 2.77
2551 5642 0.178068 ACGTGTCACAGAGGCTTTGT 59.822 50.000 4.61 4.61 0.00 2.83
2552 5643 0.583438 CGTGTCACAGAGGCTTTGTG 59.417 55.000 27.21 27.21 45.61 3.33
2557 5648 0.590195 CACAGAGGCTTTGTGAGTGC 59.410 55.000 28.69 0.00 46.85 4.40
2558 5649 0.471617 ACAGAGGCTTTGTGAGTGCT 59.528 50.000 10.22 0.00 0.00 4.40
2559 5650 0.873054 CAGAGGCTTTGTGAGTGCTG 59.127 55.000 0.00 0.00 0.00 4.41
2560 5651 0.888285 AGAGGCTTTGTGAGTGCTGC 60.888 55.000 0.00 0.00 0.00 5.25
2561 5652 1.152902 AGGCTTTGTGAGTGCTGCA 60.153 52.632 0.00 0.00 0.00 4.41
2562 5653 1.008079 GGCTTTGTGAGTGCTGCAC 60.008 57.895 24.59 24.59 36.81 4.57
2564 5655 0.383231 GCTTTGTGAGTGCTGCACTT 59.617 50.000 33.33 18.79 45.44 3.16
2565 5656 1.862815 GCTTTGTGAGTGCTGCACTTG 60.863 52.381 33.33 19.71 45.44 3.16
2566 5657 0.740149 TTTGTGAGTGCTGCACTTGG 59.260 50.000 33.33 0.00 45.44 3.61
2567 5658 1.727511 TTGTGAGTGCTGCACTTGGC 61.728 55.000 33.33 24.73 45.44 4.52
2578 5669 2.531522 GCACTTGGCAAAGGTTCAAT 57.468 45.000 5.66 0.00 43.97 2.57
2579 5670 2.137523 GCACTTGGCAAAGGTTCAATG 58.862 47.619 5.66 0.00 43.97 2.82
2580 5671 2.137523 CACTTGGCAAAGGTTCAATGC 58.862 47.619 5.66 0.00 37.76 3.56
2581 5672 2.041701 ACTTGGCAAAGGTTCAATGCT 58.958 42.857 5.66 0.00 39.94 3.79
2582 5673 2.435437 ACTTGGCAAAGGTTCAATGCTT 59.565 40.909 5.66 0.00 39.94 3.91
2583 5674 3.118298 ACTTGGCAAAGGTTCAATGCTTT 60.118 39.130 5.66 0.00 39.94 3.51
2584 5675 4.100808 ACTTGGCAAAGGTTCAATGCTTTA 59.899 37.500 5.66 0.00 39.94 1.85
2585 5676 3.988819 TGGCAAAGGTTCAATGCTTTAC 58.011 40.909 0.00 0.00 39.94 2.01
2586 5677 3.244044 TGGCAAAGGTTCAATGCTTTACC 60.244 43.478 0.00 0.00 39.94 2.85
2587 5678 2.986479 GCAAAGGTTCAATGCTTTACCG 59.014 45.455 0.00 0.00 37.12 4.02
2588 5679 3.305064 GCAAAGGTTCAATGCTTTACCGA 60.305 43.478 0.00 0.00 37.12 4.69
2589 5680 4.475944 CAAAGGTTCAATGCTTTACCGAG 58.524 43.478 0.00 0.00 35.80 4.63
2590 5681 3.418684 AGGTTCAATGCTTTACCGAGT 57.581 42.857 0.00 0.00 35.80 4.18
2591 5682 3.074412 AGGTTCAATGCTTTACCGAGTG 58.926 45.455 0.00 0.00 35.80 3.51
2592 5683 2.812011 GGTTCAATGCTTTACCGAGTGT 59.188 45.455 0.00 0.00 0.00 3.55
2593 5684 3.252458 GGTTCAATGCTTTACCGAGTGTT 59.748 43.478 0.00 0.00 0.00 3.32
2594 5685 4.453136 GGTTCAATGCTTTACCGAGTGTTA 59.547 41.667 0.00 0.00 0.00 2.41
2595 5686 5.049267 GGTTCAATGCTTTACCGAGTGTTAA 60.049 40.000 0.00 0.00 0.00 2.01
2596 5687 6.432107 GTTCAATGCTTTACCGAGTGTTAAA 58.568 36.000 0.00 0.00 0.00 1.52
2597 5688 6.811253 TCAATGCTTTACCGAGTGTTAAAT 57.189 33.333 0.00 0.00 0.00 1.40
2598 5689 6.607689 TCAATGCTTTACCGAGTGTTAAATG 58.392 36.000 0.00 0.00 0.00 2.32
2599 5690 4.413495 TGCTTTACCGAGTGTTAAATGC 57.587 40.909 0.00 0.00 0.00 3.56
2600 5691 3.120477 TGCTTTACCGAGTGTTAAATGCG 60.120 43.478 0.00 0.00 0.00 4.73
2601 5692 3.726782 GCTTTACCGAGTGTTAAATGCGG 60.727 47.826 0.00 0.00 46.83 5.69
2602 5693 1.361793 TACCGAGTGTTAAATGCGGC 58.638 50.000 0.00 0.00 45.45 6.53
2603 5694 0.604243 ACCGAGTGTTAAATGCGGCA 60.604 50.000 4.58 4.58 45.45 5.69
2604 5695 0.519519 CCGAGTGTTAAATGCGGCAA 59.480 50.000 6.82 0.00 35.17 4.52
2605 5696 1.132262 CCGAGTGTTAAATGCGGCAAT 59.868 47.619 6.82 0.00 35.17 3.56
2606 5697 2.440501 CGAGTGTTAAATGCGGCAATC 58.559 47.619 6.82 0.00 0.00 2.67
2607 5698 2.095853 CGAGTGTTAAATGCGGCAATCT 59.904 45.455 6.82 0.00 0.00 2.40
2608 5699 3.308595 CGAGTGTTAAATGCGGCAATCTA 59.691 43.478 6.82 0.00 0.00 1.98
2609 5700 4.024893 CGAGTGTTAAATGCGGCAATCTAT 60.025 41.667 6.82 0.00 0.00 1.98
2610 5701 5.504010 CGAGTGTTAAATGCGGCAATCTATT 60.504 40.000 6.82 0.00 0.00 1.73
2611 5702 5.581605 AGTGTTAAATGCGGCAATCTATTG 58.418 37.500 6.82 0.00 40.66 1.90
2612 5703 5.356751 AGTGTTAAATGCGGCAATCTATTGA 59.643 36.000 6.82 0.00 40.14 2.57
2613 5704 5.682862 GTGTTAAATGCGGCAATCTATTGAG 59.317 40.000 6.82 1.35 40.14 3.02
2614 5705 3.360249 AAATGCGGCAATCTATTGAGC 57.640 42.857 6.82 10.70 40.14 4.26
2615 5706 2.267174 ATGCGGCAATCTATTGAGCT 57.733 45.000 6.82 0.00 40.79 4.09
2616 5707 1.302366 TGCGGCAATCTATTGAGCTG 58.698 50.000 17.94 7.10 40.79 4.24
2617 5708 1.134431 TGCGGCAATCTATTGAGCTGA 60.134 47.619 17.94 0.00 40.79 4.26
2618 5709 2.149578 GCGGCAATCTATTGAGCTGAT 58.850 47.619 6.87 0.00 40.14 2.90
2619 5710 2.551459 GCGGCAATCTATTGAGCTGATT 59.449 45.455 6.87 0.00 40.14 2.57
2620 5711 3.004106 GCGGCAATCTATTGAGCTGATTT 59.996 43.478 6.87 0.00 40.14 2.17
2621 5712 4.214119 GCGGCAATCTATTGAGCTGATTTA 59.786 41.667 6.87 0.00 40.14 1.40
2622 5713 5.277974 GCGGCAATCTATTGAGCTGATTTAA 60.278 40.000 6.87 0.00 40.14 1.52
2623 5714 6.728200 CGGCAATCTATTGAGCTGATTTAAA 58.272 36.000 6.87 0.00 40.14 1.52
2624 5715 7.195646 CGGCAATCTATTGAGCTGATTTAAAA 58.804 34.615 6.87 0.00 40.14 1.52
2625 5716 7.701924 CGGCAATCTATTGAGCTGATTTAAAAA 59.298 33.333 6.87 0.00 40.14 1.94
2643 5734 3.665745 AAAAACATCACCATCACTGCC 57.334 42.857 0.00 0.00 0.00 4.85
2644 5735 2.291209 AAACATCACCATCACTGCCA 57.709 45.000 0.00 0.00 0.00 4.92
2645 5736 2.519771 AACATCACCATCACTGCCAT 57.480 45.000 0.00 0.00 0.00 4.40
2646 5737 1.758936 ACATCACCATCACTGCCATG 58.241 50.000 0.00 0.00 0.00 3.66
2647 5738 1.005097 ACATCACCATCACTGCCATGT 59.995 47.619 0.00 0.00 0.00 3.21
2648 5739 2.239402 ACATCACCATCACTGCCATGTA 59.761 45.455 0.00 0.00 0.00 2.29
2649 5740 2.401583 TCACCATCACTGCCATGTAC 57.598 50.000 0.00 0.00 0.00 2.90
2650 5741 1.908619 TCACCATCACTGCCATGTACT 59.091 47.619 0.00 0.00 0.00 2.73
2651 5742 2.011947 CACCATCACTGCCATGTACTG 58.988 52.381 0.00 0.00 0.00 2.74
2652 5743 1.019673 CCATCACTGCCATGTACTGC 58.980 55.000 0.00 0.00 0.00 4.40
2653 5744 1.019673 CATCACTGCCATGTACTGCC 58.980 55.000 0.00 0.00 0.00 4.85
2654 5745 0.462581 ATCACTGCCATGTACTGCCG 60.463 55.000 0.00 0.00 0.00 5.69
2655 5746 1.079197 CACTGCCATGTACTGCCGA 60.079 57.895 0.00 0.00 0.00 5.54
2656 5747 0.462581 CACTGCCATGTACTGCCGAT 60.463 55.000 0.00 0.00 0.00 4.18
2657 5748 0.462581 ACTGCCATGTACTGCCGATG 60.463 55.000 0.00 0.00 0.00 3.84
2658 5749 1.779025 CTGCCATGTACTGCCGATGC 61.779 60.000 0.00 0.00 38.26 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.960102 AGCAAACAGAAAAAGACATCCCA 59.040 39.130 0.00 0.00 0.00 4.37
34 35 9.195411 GTCATTATGTTTTCATCAAGAAGCAAA 57.805 29.630 0.00 0.00 41.25 3.68
96 97 8.315391 TGCATGTCATGATAATTAGAAGTAGC 57.685 34.615 17.24 0.00 0.00 3.58
112 113 4.784177 TGATGTGGAAGTATGCATGTCAT 58.216 39.130 10.16 7.59 39.17 3.06
357 358 1.261619 GTGCTGCACGGATATGCTAAC 59.738 52.381 17.93 0.00 46.28 2.34
380 381 3.066203 GCATGCATGAACTGATGATGTGA 59.934 43.478 30.64 0.00 0.00 3.58
405 406 7.706179 GTCATTCCAAAGAAAACAACTGATGAA 59.294 33.333 0.00 0.00 35.09 2.57
590 592 3.360463 CCGCACGTTGTTGTGATAATTTG 59.640 43.478 0.00 0.00 42.55 2.32
597 599 2.307611 TACCCCGCACGTTGTTGTGA 62.308 55.000 0.00 0.00 42.55 3.58
599 601 0.952010 GATACCCCGCACGTTGTTGT 60.952 55.000 0.00 0.00 0.00 3.32
602 604 2.125832 CGATACCCCGCACGTTGT 60.126 61.111 0.00 0.00 0.00 3.32
619 621 5.314923 TGTATGTCCACCGTTAAGTAGAC 57.685 43.478 0.00 0.00 0.00 2.59
633 3617 2.860735 GCAGAACTCGTGATGTATGTCC 59.139 50.000 0.00 0.00 0.00 4.02
640 3624 1.458445 CAGTGTGCAGAACTCGTGATG 59.542 52.381 0.00 0.00 0.00 3.07
644 3628 0.747255 AGTCAGTGTGCAGAACTCGT 59.253 50.000 0.00 0.00 0.00 4.18
646 3630 1.413382 CGAGTCAGTGTGCAGAACTC 58.587 55.000 4.49 4.49 0.00 3.01
874 3869 3.119495 GCCGCTTAATTTTGTCTCCATGT 60.119 43.478 0.00 0.00 0.00 3.21
895 3890 1.692519 AGAGGTGGATGGTATAACGGC 59.307 52.381 0.00 0.00 0.00 5.68
947 3942 2.024871 GCCTGATCGTCTCGTCCG 59.975 66.667 0.00 0.00 0.00 4.79
955 3950 1.349026 CCTGGATATTGGCCTGATCGT 59.651 52.381 3.32 0.00 0.00 3.73
1012 4007 1.750572 CGAGCGCTGACTGAAGCATC 61.751 60.000 18.48 0.00 43.73 3.91
1040 4035 0.766131 TCCCTCTAGCTCTAGTCCCG 59.234 60.000 0.00 0.00 34.84 5.14
1041 4036 1.546998 GCTCCCTCTAGCTCTAGTCCC 60.547 61.905 0.00 0.00 39.50 4.46
1075 4074 1.410224 CCTACTGGAGCCCATTTTCCC 60.410 57.143 0.00 0.00 34.57 3.97
1095 4094 2.940158 ACAAGGGAAACTGTACCAACC 58.060 47.619 6.35 0.00 0.00 3.77
1103 4102 4.214332 GCAGTAGAAGAACAAGGGAAACTG 59.786 45.833 0.00 0.00 35.94 3.16
1177 4176 4.751767 TGGCACAGAAAAATCAAAAGGT 57.248 36.364 0.00 0.00 0.00 3.50
1197 4196 9.831737 CCAAACAGAAGACAAATACTTTCTATG 57.168 33.333 0.00 0.00 0.00 2.23
1199 4203 9.273016 CTCCAAACAGAAGACAAATACTTTCTA 57.727 33.333 0.00 0.00 0.00 2.10
1201 4205 6.858478 GCTCCAAACAGAAGACAAATACTTTC 59.142 38.462 0.00 0.00 0.00 2.62
1253 4261 1.771854 TGCCTCCTACAAAGACCACAA 59.228 47.619 0.00 0.00 0.00 3.33
1278 4287 1.812571 TGAATCTTTTCTTCGGCCAGC 59.187 47.619 2.24 0.00 32.78 4.85
1348 4368 9.778741 ACAAATCATCTAGTTCTCAAACAAGTA 57.221 29.630 0.00 0.00 37.88 2.24
1365 4390 9.515020 TGTAGTTCAAAGTTCAAACAAATCATC 57.485 29.630 0.00 0.00 0.00 2.92
1371 4396 8.353684 TCAACTTGTAGTTCAAAGTTCAAACAA 58.646 29.630 0.00 0.00 36.03 2.83
1415 4453 6.653989 ACTTCTCAATATGGAACCTCGAATT 58.346 36.000 0.00 0.00 0.00 2.17
1452 4490 8.589335 TTCGTGATAAAGATAGCTCCAAATAC 57.411 34.615 0.00 0.00 0.00 1.89
1482 4525 5.465051 GCGAGATGAGAGCAATATAAGACA 58.535 41.667 0.00 0.00 0.00 3.41
1494 4537 2.871022 CCTGAATTTGGCGAGATGAGAG 59.129 50.000 0.00 0.00 0.00 3.20
1725 4768 2.959507 ACCTTGCAGAAACAACAACC 57.040 45.000 0.00 0.00 0.00 3.77
1891 4982 9.120422 TGTGTTATATGCGACTAAATGTATACG 57.880 33.333 0.00 0.00 0.00 3.06
1898 4989 8.888716 TGAAACATGTGTTATATGCGACTAAAT 58.111 29.630 0.00 0.00 37.25 1.40
2007 5098 4.269363 CCGTTCCGTCTACACCATTTATTC 59.731 45.833 0.00 0.00 0.00 1.75
2016 5107 0.038892 TTGCTCCGTTCCGTCTACAC 60.039 55.000 0.00 0.00 0.00 2.90
2037 5128 3.934068 AGCCTTTGGAAAGCATTTGATG 58.066 40.909 0.00 0.00 39.27 3.07
2051 5142 3.940209 TGCCAGATACAAAAGCCTTTG 57.060 42.857 6.24 6.24 46.26 2.77
2052 5143 4.953940 TTTGCCAGATACAAAAGCCTTT 57.046 36.364 0.00 0.00 34.22 3.11
2053 5144 6.603940 TTATTTGCCAGATACAAAAGCCTT 57.396 33.333 0.00 0.00 40.19 4.35
2067 5158 3.692101 CCGTCTACACCATTTATTTGCCA 59.308 43.478 0.00 0.00 0.00 4.92
2068 5159 3.942748 TCCGTCTACACCATTTATTTGCC 59.057 43.478 0.00 0.00 0.00 4.52
2087 5178 1.466167 CCTGATGTTTGCTCTGTTCCG 59.534 52.381 0.00 0.00 0.00 4.30
2106 5197 2.959030 ACAAAAGCCTCTGGAAAGAACC 59.041 45.455 0.00 0.00 0.00 3.62
2115 5206 2.771089 TGCTGAGTACAAAAGCCTCTG 58.229 47.619 10.74 0.00 36.05 3.35
2118 5209 5.183904 CCTTATTTGCTGAGTACAAAAGCCT 59.816 40.000 10.74 1.32 40.19 4.58
2132 5223 5.957774 TGAATAAAAGGAGCCCTTATTTGCT 59.042 36.000 6.88 0.00 43.92 3.91
2158 5249 7.703328 TCCTTCAAAATTCCTATACAAATCGC 58.297 34.615 0.00 0.00 0.00 4.58
2286 5377 9.985730 ACAAAGAGATTTGAATGAATGCTAAAA 57.014 25.926 7.66 0.00 35.93 1.52
2290 5381 9.017509 TCTTACAAAGAGATTTGAATGAATGCT 57.982 29.630 7.66 0.00 35.93 3.79
2291 5382 9.630098 TTCTTACAAAGAGATTTGAATGAATGC 57.370 29.630 7.66 0.00 39.03 3.56
2295 5386 9.745018 AGGATTCTTACAAAGAGATTTGAATGA 57.255 29.630 7.66 0.58 39.03 2.57
2326 5417 6.017275 GGTTGTTTGATGGCATCATTGAAAAA 60.017 34.615 29.22 18.85 39.39 1.94
2327 5418 5.469421 GGTTGTTTGATGGCATCATTGAAAA 59.531 36.000 29.22 17.70 39.39 2.29
2328 5419 4.996122 GGTTGTTTGATGGCATCATTGAAA 59.004 37.500 29.22 18.06 39.39 2.69
2329 5420 4.563168 GGGTTGTTTGATGGCATCATTGAA 60.563 41.667 29.22 18.40 39.39 2.69
2330 5421 3.055963 GGGTTGTTTGATGGCATCATTGA 60.056 43.478 29.22 13.37 39.39 2.57
2331 5422 3.264104 GGGTTGTTTGATGGCATCATTG 58.736 45.455 29.22 0.00 39.39 2.82
2332 5423 2.905085 TGGGTTGTTTGATGGCATCATT 59.095 40.909 29.22 0.00 39.39 2.57
2333 5424 2.538222 TGGGTTGTTTGATGGCATCAT 58.462 42.857 29.22 0.00 39.39 2.45
2334 5425 2.006805 TGGGTTGTTTGATGGCATCA 57.993 45.000 25.63 25.63 37.55 3.07
2335 5426 3.399440 TTTGGGTTGTTTGATGGCATC 57.601 42.857 20.52 20.52 0.00 3.91
2336 5427 3.853355 TTTTGGGTTGTTTGATGGCAT 57.147 38.095 0.00 0.00 0.00 4.40
2337 5428 3.135348 TGATTTTGGGTTGTTTGATGGCA 59.865 39.130 0.00 0.00 0.00 4.92
2338 5429 3.737850 TGATTTTGGGTTGTTTGATGGC 58.262 40.909 0.00 0.00 0.00 4.40
2339 5430 7.927629 CCTATATGATTTTGGGTTGTTTGATGG 59.072 37.037 0.00 0.00 0.00 3.51
2340 5431 8.694540 TCCTATATGATTTTGGGTTGTTTGATG 58.305 33.333 0.00 0.00 0.00 3.07
2341 5432 8.837099 TCCTATATGATTTTGGGTTGTTTGAT 57.163 30.769 0.00 0.00 0.00 2.57
2342 5433 8.837099 ATCCTATATGATTTTGGGTTGTTTGA 57.163 30.769 0.00 0.00 0.00 2.69
2343 5434 9.316730 CAATCCTATATGATTTTGGGTTGTTTG 57.683 33.333 0.89 0.00 35.02 2.93
2344 5435 9.265862 TCAATCCTATATGATTTTGGGTTGTTT 57.734 29.630 8.57 0.00 39.26 2.83
2345 5436 8.837099 TCAATCCTATATGATTTTGGGTTGTT 57.163 30.769 8.57 0.00 39.26 2.83
2346 5437 8.281531 TCTCAATCCTATATGATTTTGGGTTGT 58.718 33.333 8.57 0.00 39.26 3.32
2347 5438 8.696043 TCTCAATCCTATATGATTTTGGGTTG 57.304 34.615 3.71 3.71 39.50 3.77
2348 5439 9.305555 CATCTCAATCCTATATGATTTTGGGTT 57.694 33.333 0.89 0.00 32.71 4.11
2349 5440 8.672329 TCATCTCAATCCTATATGATTTTGGGT 58.328 33.333 0.89 0.00 32.71 4.51
2350 5441 8.954350 GTCATCTCAATCCTATATGATTTTGGG 58.046 37.037 0.89 0.00 32.71 4.12
2351 5442 8.954350 GGTCATCTCAATCCTATATGATTTTGG 58.046 37.037 0.89 0.00 32.71 3.28
2352 5443 9.511272 TGGTCATCTCAATCCTATATGATTTTG 57.489 33.333 0.89 0.00 32.71 2.44
2356 5447 9.948747 TCTATGGTCATCTCAATCCTATATGAT 57.051 33.333 0.00 0.00 0.00 2.45
2357 5448 9.774071 TTCTATGGTCATCTCAATCCTATATGA 57.226 33.333 0.00 0.00 0.00 2.15
2361 5452 9.336462 AGAATTCTATGGTCATCTCAATCCTAT 57.664 33.333 6.06 0.00 0.00 2.57
2362 5453 8.733092 AGAATTCTATGGTCATCTCAATCCTA 57.267 34.615 6.06 0.00 0.00 2.94
2363 5454 7.630005 AGAATTCTATGGTCATCTCAATCCT 57.370 36.000 6.06 0.00 0.00 3.24
2364 5455 9.956640 ATTAGAATTCTATGGTCATCTCAATCC 57.043 33.333 15.82 0.00 0.00 3.01
2366 5457 9.956640 GGATTAGAATTCTATGGTCATCTCAAT 57.043 33.333 15.82 3.96 0.00 2.57
2367 5458 9.163894 AGGATTAGAATTCTATGGTCATCTCAA 57.836 33.333 15.82 0.00 0.00 3.02
2368 5459 8.733092 AGGATTAGAATTCTATGGTCATCTCA 57.267 34.615 15.82 0.00 0.00 3.27
2384 5475 9.555727 CGGGAATAGAAAAACATAGGATTAGAA 57.444 33.333 0.00 0.00 0.00 2.10
2385 5476 8.711170 ACGGGAATAGAAAAACATAGGATTAGA 58.289 33.333 0.00 0.00 0.00 2.10
2386 5477 8.774586 CACGGGAATAGAAAAACATAGGATTAG 58.225 37.037 0.00 0.00 0.00 1.73
2387 5478 8.269317 ACACGGGAATAGAAAAACATAGGATTA 58.731 33.333 0.00 0.00 0.00 1.75
2388 5479 7.116736 ACACGGGAATAGAAAAACATAGGATT 58.883 34.615 0.00 0.00 0.00 3.01
2389 5480 6.659824 ACACGGGAATAGAAAAACATAGGAT 58.340 36.000 0.00 0.00 0.00 3.24
2390 5481 6.057321 ACACGGGAATAGAAAAACATAGGA 57.943 37.500 0.00 0.00 0.00 2.94
2391 5482 6.753107 AACACGGGAATAGAAAAACATAGG 57.247 37.500 0.00 0.00 0.00 2.57
2394 5485 9.819267 TTTAAAAACACGGGAATAGAAAAACAT 57.181 25.926 0.00 0.00 0.00 2.71
2395 5486 9.649167 TTTTAAAAACACGGGAATAGAAAAACA 57.351 25.926 0.00 0.00 0.00 2.83
2398 5489 9.478768 GGATTTTAAAAACACGGGAATAGAAAA 57.521 29.630 4.44 0.00 0.00 2.29
2399 5490 8.089597 GGGATTTTAAAAACACGGGAATAGAAA 58.910 33.333 4.44 0.00 0.00 2.52
2400 5491 7.232941 TGGGATTTTAAAAACACGGGAATAGAA 59.767 33.333 4.44 0.00 0.00 2.10
2401 5492 6.720288 TGGGATTTTAAAAACACGGGAATAGA 59.280 34.615 4.44 0.00 0.00 1.98
2402 5493 6.809689 GTGGGATTTTAAAAACACGGGAATAG 59.190 38.462 4.44 0.00 0.00 1.73
2403 5494 6.569994 CGTGGGATTTTAAAAACACGGGAATA 60.570 38.462 29.03 5.48 45.39 1.75
2404 5495 5.543714 GTGGGATTTTAAAAACACGGGAAT 58.456 37.500 4.44 0.00 0.00 3.01
2405 5496 4.499357 CGTGGGATTTTAAAAACACGGGAA 60.499 41.667 29.03 6.31 45.39 3.97
2406 5497 3.004524 CGTGGGATTTTAAAAACACGGGA 59.995 43.478 29.03 6.59 45.39 5.14
2407 5498 3.310246 CGTGGGATTTTAAAAACACGGG 58.690 45.455 29.03 13.59 45.39 5.28
2410 5501 7.701809 TTGATTCGTGGGATTTTAAAAACAC 57.298 32.000 17.11 17.11 0.00 3.32
2411 5502 8.198109 TCTTTGATTCGTGGGATTTTAAAAACA 58.802 29.630 4.44 2.29 0.00 2.83
2412 5503 8.582433 TCTTTGATTCGTGGGATTTTAAAAAC 57.418 30.769 4.44 1.92 0.00 2.43
2413 5504 8.634444 TCTCTTTGATTCGTGGGATTTTAAAAA 58.366 29.630 4.44 0.00 0.00 1.94
2414 5505 8.172352 TCTCTTTGATTCGTGGGATTTTAAAA 57.828 30.769 2.51 2.51 0.00 1.52
2415 5506 7.753309 TCTCTTTGATTCGTGGGATTTTAAA 57.247 32.000 0.00 0.00 0.00 1.52
2416 5507 7.753309 TTCTCTTTGATTCGTGGGATTTTAA 57.247 32.000 0.00 0.00 0.00 1.52
2417 5508 7.148086 CCATTCTCTTTGATTCGTGGGATTTTA 60.148 37.037 0.00 0.00 0.00 1.52
2418 5509 6.350445 CCATTCTCTTTGATTCGTGGGATTTT 60.350 38.462 0.00 0.00 0.00 1.82
2419 5510 5.126061 CCATTCTCTTTGATTCGTGGGATTT 59.874 40.000 0.00 0.00 0.00 2.17
2420 5511 4.641989 CCATTCTCTTTGATTCGTGGGATT 59.358 41.667 0.00 0.00 0.00 3.01
2421 5512 4.202441 CCATTCTCTTTGATTCGTGGGAT 58.798 43.478 0.00 0.00 0.00 3.85
2422 5513 3.009033 ACCATTCTCTTTGATTCGTGGGA 59.991 43.478 0.00 0.00 0.00 4.37
2423 5514 3.127548 CACCATTCTCTTTGATTCGTGGG 59.872 47.826 0.00 0.00 0.00 4.61
2424 5515 3.753272 ACACCATTCTCTTTGATTCGTGG 59.247 43.478 0.00 0.00 0.00 4.94
2425 5516 5.869344 TCTACACCATTCTCTTTGATTCGTG 59.131 40.000 0.00 0.00 0.00 4.35
2426 5517 5.869888 GTCTACACCATTCTCTTTGATTCGT 59.130 40.000 0.00 0.00 0.00 3.85
2427 5518 5.869344 TGTCTACACCATTCTCTTTGATTCG 59.131 40.000 0.00 0.00 0.00 3.34
2428 5519 7.099764 TCTGTCTACACCATTCTCTTTGATTC 58.900 38.462 0.00 0.00 0.00 2.52
2429 5520 7.009179 TCTGTCTACACCATTCTCTTTGATT 57.991 36.000 0.00 0.00 0.00 2.57
2430 5521 6.611613 TCTGTCTACACCATTCTCTTTGAT 57.388 37.500 0.00 0.00 0.00 2.57
2431 5522 6.419484 TTCTGTCTACACCATTCTCTTTGA 57.581 37.500 0.00 0.00 0.00 2.69
2432 5523 7.388776 TCAATTCTGTCTACACCATTCTCTTTG 59.611 37.037 0.00 0.00 0.00 2.77
2433 5524 7.453393 TCAATTCTGTCTACACCATTCTCTTT 58.547 34.615 0.00 0.00 0.00 2.52
2434 5525 7.009179 TCAATTCTGTCTACACCATTCTCTT 57.991 36.000 0.00 0.00 0.00 2.85
2435 5526 6.611613 TCAATTCTGTCTACACCATTCTCT 57.388 37.500 0.00 0.00 0.00 3.10
2436 5527 5.293079 GCTCAATTCTGTCTACACCATTCTC 59.707 44.000 0.00 0.00 0.00 2.87
2437 5528 5.181748 GCTCAATTCTGTCTACACCATTCT 58.818 41.667 0.00 0.00 0.00 2.40
2438 5529 4.937620 TGCTCAATTCTGTCTACACCATTC 59.062 41.667 0.00 0.00 0.00 2.67
2439 5530 4.910195 TGCTCAATTCTGTCTACACCATT 58.090 39.130 0.00 0.00 0.00 3.16
2440 5531 4.558226 TGCTCAATTCTGTCTACACCAT 57.442 40.909 0.00 0.00 0.00 3.55
2441 5532 4.350368 TTGCTCAATTCTGTCTACACCA 57.650 40.909 0.00 0.00 0.00 4.17
2442 5533 4.515191 TGTTTGCTCAATTCTGTCTACACC 59.485 41.667 0.00 0.00 0.00 4.16
2443 5534 5.673337 TGTTTGCTCAATTCTGTCTACAC 57.327 39.130 0.00 0.00 0.00 2.90
2444 5535 5.997129 TGATGTTTGCTCAATTCTGTCTACA 59.003 36.000 0.00 0.00 0.00 2.74
2445 5536 6.486253 TGATGTTTGCTCAATTCTGTCTAC 57.514 37.500 0.00 0.00 0.00 2.59
2446 5537 6.712095 ACTTGATGTTTGCTCAATTCTGTCTA 59.288 34.615 0.00 0.00 32.50 2.59
2447 5538 5.533903 ACTTGATGTTTGCTCAATTCTGTCT 59.466 36.000 0.00 0.00 32.50 3.41
2448 5539 5.628193 CACTTGATGTTTGCTCAATTCTGTC 59.372 40.000 0.00 0.00 32.50 3.51
2449 5540 5.526115 CACTTGATGTTTGCTCAATTCTGT 58.474 37.500 0.00 0.00 32.50 3.41
2450 5541 4.384846 GCACTTGATGTTTGCTCAATTCTG 59.615 41.667 0.00 0.00 32.50 3.02
2451 5542 4.280174 AGCACTTGATGTTTGCTCAATTCT 59.720 37.500 0.00 0.00 43.14 2.40
2452 5543 4.553323 AGCACTTGATGTTTGCTCAATTC 58.447 39.130 0.00 0.00 43.14 2.17
2453 5544 4.595762 AGCACTTGATGTTTGCTCAATT 57.404 36.364 0.00 0.00 43.14 2.32
2454 5545 4.595762 AAGCACTTGATGTTTGCTCAAT 57.404 36.364 0.00 0.00 45.93 2.57
2455 5546 4.362279 GAAAGCACTTGATGTTTGCTCAA 58.638 39.130 0.00 0.00 45.93 3.02
2456 5547 3.243501 GGAAAGCACTTGATGTTTGCTCA 60.244 43.478 0.00 0.00 45.93 4.26
2457 5548 3.243501 TGGAAAGCACTTGATGTTTGCTC 60.244 43.478 0.00 0.00 45.93 4.26
2459 5550 3.054878 CTGGAAAGCACTTGATGTTTGC 58.945 45.455 0.00 0.00 31.16 3.68
2460 5551 4.543692 CTCTGGAAAGCACTTGATGTTTG 58.456 43.478 0.00 0.00 31.16 2.93
2461 5552 3.571401 CCTCTGGAAAGCACTTGATGTTT 59.429 43.478 0.00 0.00 32.24 2.83
2462 5553 3.152341 CCTCTGGAAAGCACTTGATGTT 58.848 45.455 0.00 0.00 0.00 2.71
2463 5554 2.787994 CCTCTGGAAAGCACTTGATGT 58.212 47.619 0.00 0.00 0.00 3.06
2464 5555 1.471684 GCCTCTGGAAAGCACTTGATG 59.528 52.381 0.00 0.00 0.00 3.07
2465 5556 1.353694 AGCCTCTGGAAAGCACTTGAT 59.646 47.619 0.00 0.00 0.00 2.57
2466 5557 0.767375 AGCCTCTGGAAAGCACTTGA 59.233 50.000 0.00 0.00 0.00 3.02
2467 5558 1.613836 AAGCCTCTGGAAAGCACTTG 58.386 50.000 0.00 0.00 0.00 3.16
2468 5559 2.363359 CAAAAGCCTCTGGAAAGCACTT 59.637 45.455 0.00 0.00 0.00 3.16
2469 5560 1.959282 CAAAAGCCTCTGGAAAGCACT 59.041 47.619 0.00 0.00 0.00 4.40
2470 5561 1.683385 ACAAAAGCCTCTGGAAAGCAC 59.317 47.619 0.00 0.00 0.00 4.40
2471 5562 2.071778 ACAAAAGCCTCTGGAAAGCA 57.928 45.000 0.00 0.00 0.00 3.91
2472 5563 2.884639 TGTACAAAAGCCTCTGGAAAGC 59.115 45.455 0.00 0.00 0.00 3.51
2473 5564 4.082571 CCATGTACAAAAGCCTCTGGAAAG 60.083 45.833 0.00 0.00 0.00 2.62
2474 5565 3.826157 CCATGTACAAAAGCCTCTGGAAA 59.174 43.478 0.00 0.00 0.00 3.13
2475 5566 3.420893 CCATGTACAAAAGCCTCTGGAA 58.579 45.455 0.00 0.00 0.00 3.53
2476 5567 2.879756 GCCATGTACAAAAGCCTCTGGA 60.880 50.000 11.21 0.00 0.00 3.86
2477 5568 1.474077 GCCATGTACAAAAGCCTCTGG 59.526 52.381 0.00 1.11 0.00 3.86
2478 5569 2.440409 AGCCATGTACAAAAGCCTCTG 58.560 47.619 0.00 0.00 0.00 3.35
2479 5570 2.887151 AGCCATGTACAAAAGCCTCT 57.113 45.000 0.00 0.00 0.00 3.69
2480 5571 4.202050 CCATAAGCCATGTACAAAAGCCTC 60.202 45.833 0.00 0.00 32.21 4.70
2481 5572 3.701040 CCATAAGCCATGTACAAAAGCCT 59.299 43.478 0.00 0.00 32.21 4.58
2482 5573 3.447229 ACCATAAGCCATGTACAAAAGCC 59.553 43.478 0.00 0.00 32.21 4.35
2483 5574 4.423732 CACCATAAGCCATGTACAAAAGC 58.576 43.478 0.00 3.13 32.21 3.51
2484 5575 4.082300 TGCACCATAAGCCATGTACAAAAG 60.082 41.667 0.00 0.00 32.21 2.27
2485 5576 3.829026 TGCACCATAAGCCATGTACAAAA 59.171 39.130 0.00 0.00 32.21 2.44
2486 5577 3.425659 TGCACCATAAGCCATGTACAAA 58.574 40.909 0.00 0.00 32.21 2.83
2487 5578 3.078891 TGCACCATAAGCCATGTACAA 57.921 42.857 0.00 0.00 32.21 2.41
2488 5579 2.797177 TGCACCATAAGCCATGTACA 57.203 45.000 0.00 0.00 32.21 2.90
2489 5580 3.730662 CGTTTGCACCATAAGCCATGTAC 60.731 47.826 0.00 0.00 32.21 2.90
2490 5581 2.421775 CGTTTGCACCATAAGCCATGTA 59.578 45.455 0.00 0.00 32.21 2.29
2491 5582 1.202114 CGTTTGCACCATAAGCCATGT 59.798 47.619 0.00 0.00 32.21 3.21
2492 5583 1.469595 CCGTTTGCACCATAAGCCATG 60.470 52.381 0.00 0.00 0.00 3.66
2493 5584 0.817013 CCGTTTGCACCATAAGCCAT 59.183 50.000 0.00 0.00 0.00 4.40
2494 5585 0.250945 TCCGTTTGCACCATAAGCCA 60.251 50.000 0.00 0.00 0.00 4.75
2495 5586 0.451783 CTCCGTTTGCACCATAAGCC 59.548 55.000 0.00 0.00 0.00 4.35
2496 5587 0.179163 GCTCCGTTTGCACCATAAGC 60.179 55.000 0.00 0.00 0.00 3.09
2497 5588 1.164411 TGCTCCGTTTGCACCATAAG 58.836 50.000 0.00 0.00 35.31 1.73
2498 5589 1.610363 TTGCTCCGTTTGCACCATAA 58.390 45.000 0.00 0.00 40.40 1.90
2499 5590 1.268352 GTTTGCTCCGTTTGCACCATA 59.732 47.619 0.00 0.00 40.40 2.74
2500 5591 0.031994 GTTTGCTCCGTTTGCACCAT 59.968 50.000 0.00 0.00 40.40 3.55
2501 5592 1.315981 TGTTTGCTCCGTTTGCACCA 61.316 50.000 0.00 0.00 40.40 4.17
2502 5593 0.031994 ATGTTTGCTCCGTTTGCACC 59.968 50.000 0.00 0.00 40.40 5.01
2503 5594 1.268999 TGATGTTTGCTCCGTTTGCAC 60.269 47.619 0.00 0.00 40.40 4.57
2504 5595 1.028130 TGATGTTTGCTCCGTTTGCA 58.972 45.000 0.00 0.00 38.80 4.08
2505 5596 2.053627 CTTGATGTTTGCTCCGTTTGC 58.946 47.619 0.00 0.00 0.00 3.68
2506 5597 2.293122 TCCTTGATGTTTGCTCCGTTTG 59.707 45.455 0.00 0.00 0.00 2.93
2507 5598 2.293399 GTCCTTGATGTTTGCTCCGTTT 59.707 45.455 0.00 0.00 0.00 3.60
2508 5599 1.880027 GTCCTTGATGTTTGCTCCGTT 59.120 47.619 0.00 0.00 0.00 4.44
2509 5600 1.202758 TGTCCTTGATGTTTGCTCCGT 60.203 47.619 0.00 0.00 0.00 4.69
2510 5601 1.197721 GTGTCCTTGATGTTTGCTCCG 59.802 52.381 0.00 0.00 0.00 4.63
2511 5602 1.541588 GGTGTCCTTGATGTTTGCTCC 59.458 52.381 0.00 0.00 0.00 4.70
2512 5603 2.030805 GTGGTGTCCTTGATGTTTGCTC 60.031 50.000 0.00 0.00 0.00 4.26
2513 5604 1.956477 GTGGTGTCCTTGATGTTTGCT 59.044 47.619 0.00 0.00 0.00 3.91
2514 5605 1.334960 CGTGGTGTCCTTGATGTTTGC 60.335 52.381 0.00 0.00 0.00 3.68
2515 5606 1.946768 ACGTGGTGTCCTTGATGTTTG 59.053 47.619 0.00 0.00 0.00 2.93
2516 5607 1.946768 CACGTGGTGTCCTTGATGTTT 59.053 47.619 7.95 0.00 0.00 2.83
2517 5608 1.134220 ACACGTGGTGTCCTTGATGTT 60.134 47.619 21.57 0.00 43.92 2.71
2518 5609 0.468226 ACACGTGGTGTCCTTGATGT 59.532 50.000 21.57 0.00 43.92 3.06
2519 5610 3.305709 ACACGTGGTGTCCTTGATG 57.694 52.632 21.57 0.00 43.92 3.07
2528 5619 1.956170 GCCTCTGTGACACGTGGTG 60.956 63.158 21.57 4.93 39.75 4.17
2529 5620 1.686325 AAGCCTCTGTGACACGTGGT 61.686 55.000 21.57 5.35 0.00 4.16
2530 5621 0.532862 AAAGCCTCTGTGACACGTGG 60.533 55.000 21.57 0.90 0.00 4.94
2531 5622 0.583438 CAAAGCCTCTGTGACACGTG 59.417 55.000 15.48 15.48 0.00 4.49
2532 5623 0.178068 ACAAAGCCTCTGTGACACGT 59.822 50.000 0.22 0.00 0.00 4.49
2533 5624 0.583438 CACAAAGCCTCTGTGACACG 59.417 55.000 0.00 0.00 45.80 4.49
2534 5625 1.869767 CTCACAAAGCCTCTGTGACAC 59.130 52.381 0.00 0.00 46.30 3.67
2535 5626 1.486310 ACTCACAAAGCCTCTGTGACA 59.514 47.619 0.00 0.00 46.30 3.58
2536 5627 1.869767 CACTCACAAAGCCTCTGTGAC 59.130 52.381 0.00 0.00 46.30 3.67
2538 5629 0.590195 GCACTCACAAAGCCTCTGTG 59.410 55.000 0.00 0.00 44.57 3.66
2539 5630 0.471617 AGCACTCACAAAGCCTCTGT 59.528 50.000 0.00 0.00 0.00 3.41
2540 5631 0.873054 CAGCACTCACAAAGCCTCTG 59.127 55.000 0.00 0.00 0.00 3.35
2541 5632 0.888285 GCAGCACTCACAAAGCCTCT 60.888 55.000 0.00 0.00 0.00 3.69
2542 5633 1.168407 TGCAGCACTCACAAAGCCTC 61.168 55.000 0.00 0.00 0.00 4.70
2543 5634 1.152902 TGCAGCACTCACAAAGCCT 60.153 52.632 0.00 0.00 0.00 4.58
2544 5635 1.008079 GTGCAGCACTCACAAAGCC 60.008 57.895 18.92 0.00 34.73 4.35
2545 5636 0.383231 AAGTGCAGCACTCACAAAGC 59.617 50.000 28.38 0.00 44.62 3.51
2546 5637 1.268896 CCAAGTGCAGCACTCACAAAG 60.269 52.381 28.38 13.32 44.62 2.77
2547 5638 0.740149 CCAAGTGCAGCACTCACAAA 59.260 50.000 28.38 0.00 44.62 2.83
2548 5639 1.727511 GCCAAGTGCAGCACTCACAA 61.728 55.000 28.38 0.00 44.62 3.33
2549 5640 2.188829 GCCAAGTGCAGCACTCACA 61.189 57.895 28.38 0.00 44.62 3.58
2550 5641 2.641559 GCCAAGTGCAGCACTCAC 59.358 61.111 28.38 16.35 44.62 3.51
2559 5650 2.137523 CATTGAACCTTTGCCAAGTGC 58.862 47.619 0.00 0.00 41.77 4.40
2560 5651 2.137523 GCATTGAACCTTTGCCAAGTG 58.862 47.619 0.00 0.00 0.00 3.16
2561 5652 2.041701 AGCATTGAACCTTTGCCAAGT 58.958 42.857 0.00 0.00 37.07 3.16
2562 5653 2.825861 AGCATTGAACCTTTGCCAAG 57.174 45.000 0.00 0.00 37.07 3.61
2563 5654 3.557228 AAAGCATTGAACCTTTGCCAA 57.443 38.095 0.00 0.00 37.07 4.52
2564 5655 3.244044 GGTAAAGCATTGAACCTTTGCCA 60.244 43.478 16.63 0.00 46.51 4.92
2565 5656 3.325870 GGTAAAGCATTGAACCTTTGCC 58.674 45.455 10.03 10.03 43.25 4.52
2566 5657 2.986479 CGGTAAAGCATTGAACCTTTGC 59.014 45.455 3.73 2.59 33.90 3.68
2567 5658 4.023193 ACTCGGTAAAGCATTGAACCTTTG 60.023 41.667 3.73 0.00 33.90 2.77
2568 5659 4.023193 CACTCGGTAAAGCATTGAACCTTT 60.023 41.667 0.00 0.00 33.90 3.11
2569 5660 3.502211 CACTCGGTAAAGCATTGAACCTT 59.498 43.478 0.00 0.00 33.90 3.50
2570 5661 3.074412 CACTCGGTAAAGCATTGAACCT 58.926 45.455 0.00 0.00 33.90 3.50
2571 5662 2.812011 ACACTCGGTAAAGCATTGAACC 59.188 45.455 0.00 0.00 33.01 3.62
2572 5663 4.483476 AACACTCGGTAAAGCATTGAAC 57.517 40.909 0.00 0.00 0.00 3.18
2573 5664 6.621316 TTTAACACTCGGTAAAGCATTGAA 57.379 33.333 0.00 0.00 0.00 2.69
2574 5665 6.607689 CATTTAACACTCGGTAAAGCATTGA 58.392 36.000 0.00 0.00 0.00 2.57
2575 5666 5.286082 GCATTTAACACTCGGTAAAGCATTG 59.714 40.000 0.00 0.00 0.00 2.82
2576 5667 5.399013 GCATTTAACACTCGGTAAAGCATT 58.601 37.500 0.00 0.00 0.00 3.56
2577 5668 4.436852 CGCATTTAACACTCGGTAAAGCAT 60.437 41.667 0.00 0.00 0.00 3.79
2578 5669 3.120477 CGCATTTAACACTCGGTAAAGCA 60.120 43.478 0.00 0.00 0.00 3.91
2579 5670 3.413558 CGCATTTAACACTCGGTAAAGC 58.586 45.455 0.00 0.00 0.00 3.51
2580 5671 3.726782 GCCGCATTTAACACTCGGTAAAG 60.727 47.826 0.00 0.00 41.89 1.85
2581 5672 2.160022 GCCGCATTTAACACTCGGTAAA 59.840 45.455 0.00 0.00 41.89 2.01
2582 5673 1.733360 GCCGCATTTAACACTCGGTAA 59.267 47.619 0.00 0.00 41.89 2.85
2583 5674 1.337917 TGCCGCATTTAACACTCGGTA 60.338 47.619 0.00 0.00 41.89 4.02
2584 5675 0.604243 TGCCGCATTTAACACTCGGT 60.604 50.000 0.00 0.00 41.89 4.69
2585 5676 0.519519 TTGCCGCATTTAACACTCGG 59.480 50.000 0.00 0.00 42.68 4.63
2586 5677 2.095853 AGATTGCCGCATTTAACACTCG 59.904 45.455 0.00 0.00 0.00 4.18
2587 5678 3.764885 AGATTGCCGCATTTAACACTC 57.235 42.857 0.00 0.00 0.00 3.51
2588 5679 5.356751 TCAATAGATTGCCGCATTTAACACT 59.643 36.000 0.00 0.00 37.68 3.55
2589 5680 5.577835 TCAATAGATTGCCGCATTTAACAC 58.422 37.500 0.00 0.00 37.68 3.32
2590 5681 5.733091 GCTCAATAGATTGCCGCATTTAACA 60.733 40.000 0.00 0.00 37.68 2.41
2591 5682 4.676924 GCTCAATAGATTGCCGCATTTAAC 59.323 41.667 0.00 0.00 37.68 2.01
2592 5683 4.580167 AGCTCAATAGATTGCCGCATTTAA 59.420 37.500 14.52 0.00 36.81 1.52
2593 5684 4.023792 CAGCTCAATAGATTGCCGCATTTA 60.024 41.667 14.52 0.00 36.81 1.40
2594 5685 2.954318 AGCTCAATAGATTGCCGCATTT 59.046 40.909 14.52 0.00 36.81 2.32
2595 5686 2.292569 CAGCTCAATAGATTGCCGCATT 59.707 45.455 14.52 0.00 36.81 3.56
2596 5687 1.878088 CAGCTCAATAGATTGCCGCAT 59.122 47.619 14.52 0.00 36.81 4.73
2597 5688 1.134431 TCAGCTCAATAGATTGCCGCA 60.134 47.619 14.52 0.00 36.81 5.69
2598 5689 1.586422 TCAGCTCAATAGATTGCCGC 58.414 50.000 0.00 3.44 37.68 6.53
2599 5690 4.825546 AAATCAGCTCAATAGATTGCCG 57.174 40.909 0.00 0.00 37.68 5.69
2600 5691 8.931385 TTTTTAAATCAGCTCAATAGATTGCC 57.069 30.769 0.00 0.00 37.68 4.52
2623 5714 2.964464 TGGCAGTGATGGTGATGTTTTT 59.036 40.909 0.00 0.00 0.00 1.94
2624 5715 2.596346 TGGCAGTGATGGTGATGTTTT 58.404 42.857 0.00 0.00 0.00 2.43
2625 5716 2.291209 TGGCAGTGATGGTGATGTTT 57.709 45.000 0.00 0.00 0.00 2.83
2626 5717 2.097036 CATGGCAGTGATGGTGATGTT 58.903 47.619 0.00 0.00 0.00 2.71
2627 5718 1.005097 ACATGGCAGTGATGGTGATGT 59.995 47.619 0.00 0.00 0.00 3.06
2628 5719 1.758936 ACATGGCAGTGATGGTGATG 58.241 50.000 0.00 0.00 0.00 3.07
2629 5720 2.507058 AGTACATGGCAGTGATGGTGAT 59.493 45.455 0.00 0.00 0.00 3.06
2630 5721 1.908619 AGTACATGGCAGTGATGGTGA 59.091 47.619 0.00 0.00 0.00 4.02
2631 5722 2.011947 CAGTACATGGCAGTGATGGTG 58.988 52.381 0.00 0.00 0.00 4.17
2632 5723 1.679944 GCAGTACATGGCAGTGATGGT 60.680 52.381 8.22 0.00 0.00 3.55
2633 5724 1.019673 GCAGTACATGGCAGTGATGG 58.980 55.000 8.22 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.