Multiple sequence alignment - TraesCS1A01G056800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G056800 chr1A 100.000 2429 0 0 1 2429 36822911 36825339 0.000000e+00 4486
1 TraesCS1A01G056800 chr1A 85.771 759 92 9 1632 2376 548798406 548797650 0.000000e+00 789
2 TraesCS1A01G056800 chr1A 87.034 671 36 14 780 1430 36794042 36794681 0.000000e+00 710
3 TraesCS1A01G056800 chr1A 82.582 488 58 15 1632 2105 535291305 535290831 2.910000e-109 405
4 TraesCS1A01G056800 chr1A 94.406 143 8 0 390 532 36816892 36817034 1.130000e-53 220
5 TraesCS1A01G056800 chr1D 90.284 916 56 19 734 1631 37887564 37888464 0.000000e+00 1168
6 TraesCS1A01G056800 chr1D 80.738 488 62 16 1632 2105 438974941 438974472 3.840000e-93 351
7 TraesCS1A01G056800 chr1D 86.496 274 30 5 1631 1900 438974023 438974293 6.570000e-76 294
8 TraesCS1A01G056800 chr1D 92.778 180 12 1 195 373 482914607 482914428 2.400000e-65 259
9 TraesCS1A01G056800 chr1D 90.968 155 14 0 378 532 340899199 340899353 2.450000e-50 209
10 TraesCS1A01G056800 chr1D 86.335 161 20 2 373 532 143030934 143030775 8.930000e-40 174
11 TraesCS1A01G056800 chr1D 85.586 111 9 4 10 120 401005311 401005208 2.550000e-20 110
12 TraesCS1A01G056800 chr1B 90.561 731 54 11 915 1631 57705787 57706516 0.000000e+00 953
13 TraesCS1A01G056800 chr1B 87.324 710 52 12 734 1430 57682377 57683061 0.000000e+00 778
14 TraesCS1A01G056800 chr1B 86.885 732 43 20 706 1430 57643372 57644057 0.000000e+00 771
15 TraesCS1A01G056800 chr1B 86.139 707 47 25 734 1430 57629586 57630251 0.000000e+00 715
16 TraesCS1A01G056800 chr1B 87.287 527 31 9 904 1430 57686337 57686827 9.740000e-159 569
17 TraesCS1A01G056800 chr1B 80.493 487 76 9 1632 2105 595032767 595032287 2.970000e-94 355
18 TraesCS1A01G056800 chr1B 86.716 271 31 4 1631 1900 595031850 595032116 1.830000e-76 296
19 TraesCS1A01G056800 chr2D 88.406 759 64 13 1637 2381 647103526 647104274 0.000000e+00 893
20 TraesCS1A01G056800 chr2D 93.035 201 13 1 175 374 8655039 8655239 2.360000e-75 292
21 TraesCS1A01G056800 chr2D 84.871 271 35 6 1632 1900 647104692 647104426 3.980000e-68 268
22 TraesCS1A01G056800 chr2D 94.410 161 9 0 1 161 8654736 8654896 5.190000e-62 248
23 TraesCS1A01G056800 chr2D 87.425 167 19 2 366 532 600116344 600116508 8.860000e-45 191
24 TraesCS1A01G056800 chr2D 92.000 100 8 0 1632 1731 646811162 646811063 9.050000e-30 141
25 TraesCS1A01G056800 chr4B 84.183 765 78 19 1631 2381 10912047 10912782 0.000000e+00 702
26 TraesCS1A01G056800 chr4B 98.964 386 4 0 1 386 106495074 106495459 0.000000e+00 691
27 TraesCS1A01G056800 chr4B 99.732 373 1 0 1 373 24740077 24739705 0.000000e+00 684
28 TraesCS1A01G056800 chr4B 84.589 292 40 5 1628 1917 10913210 10912922 3.950000e-73 285
29 TraesCS1A01G056800 chr4B 84.589 292 40 5 1628 1917 10913922 10913634 3.950000e-73 285
30 TraesCS1A01G056800 chr7A 99.732 373 1 0 1 373 668997565 668997937 0.000000e+00 684
31 TraesCS1A01G056800 chr7A 92.361 144 11 0 389 532 37290310 37290453 3.170000e-49 206
32 TraesCS1A01G056800 chr6B 98.698 384 4 1 1 384 566544325 566543943 0.000000e+00 680
33 TraesCS1A01G056800 chr6B 86.441 118 16 0 534 651 478295613 478295730 1.960000e-26 130
34 TraesCS1A01G056800 chr5D 92.408 382 27 2 1 380 375183223 375183604 5.910000e-151 544
35 TraesCS1A01G056800 chr5D 90.052 382 31 4 1 380 375165391 375165767 2.810000e-134 488
36 TraesCS1A01G056800 chr5D 91.613 155 13 0 378 532 394814560 394814714 5.260000e-52 215
37 TraesCS1A01G056800 chr5D 86.290 124 16 1 534 656 193045533 193045410 1.520000e-27 134
38 TraesCS1A01G056800 chr5D 86.290 124 16 1 534 656 518102682 518102805 1.520000e-27 134
39 TraesCS1A01G056800 chr4A 95.290 276 13 0 2056 2331 743556136 743555861 2.870000e-119 438
40 TraesCS1A01G056800 chr4A 84.169 379 42 11 1631 1995 743556515 743556141 3.840000e-93 351
41 TraesCS1A01G056800 chr4A 89.241 158 13 3 378 532 27173530 27173374 6.850000e-46 195
42 TraesCS1A01G056800 chr3D 82.405 449 56 17 1726 2156 476452548 476452105 1.060000e-98 370
43 TraesCS1A01G056800 chr3D 86.179 123 17 0 534 656 517669911 517670033 1.520000e-27 134
44 TraesCS1A01G056800 chr2A 87.063 286 32 2 1632 1917 16477362 16477082 3.900000e-83 318
45 TraesCS1A01G056800 chr2A 88.353 249 28 1 1942 2190 16476733 16476486 5.080000e-77 298
46 TraesCS1A01G056800 chr7D 87.218 266 33 1 1631 1896 214359301 214359565 3.920000e-78 302
47 TraesCS1A01G056800 chr7D 86.179 123 17 0 534 656 210421468 210421590 1.520000e-27 134
48 TraesCS1A01G056800 chr3B 92.784 194 13 1 1 194 104504701 104504893 1.840000e-71 279
49 TraesCS1A01G056800 chr2B 91.667 192 14 2 185 374 391043751 391043560 5.150000e-67 265
50 TraesCS1A01G056800 chr2B 84.733 131 17 3 527 656 88105746 88105874 7.050000e-26 128
51 TraesCS1A01G056800 chr7B 90.968 155 14 0 378 532 272520763 272520917 2.450000e-50 209
52 TraesCS1A01G056800 chr7B 86.290 124 16 1 534 656 462504576 462504699 1.520000e-27 134
53 TraesCS1A01G056800 chr5A 88.623 167 17 2 366 532 514497412 514497576 4.100000e-48 202
54 TraesCS1A01G056800 chr6D 85.484 124 17 1 534 656 150008908 150009031 7.050000e-26 128
55 TraesCS1A01G056800 chr4D 85.484 124 17 1 534 656 39053726 39053603 7.050000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G056800 chr1A 36822911 36825339 2428 False 4486.0 4486 100.0000 1 2429 1 chr1A.!!$F3 2428
1 TraesCS1A01G056800 chr1A 548797650 548798406 756 True 789.0 789 85.7710 1632 2376 1 chr1A.!!$R2 744
2 TraesCS1A01G056800 chr1A 36794042 36794681 639 False 710.0 710 87.0340 780 1430 1 chr1A.!!$F1 650
3 TraesCS1A01G056800 chr1D 37887564 37888464 900 False 1168.0 1168 90.2840 734 1631 1 chr1D.!!$F1 897
4 TraesCS1A01G056800 chr1B 57705787 57706516 729 False 953.0 953 90.5610 915 1631 1 chr1B.!!$F3 716
5 TraesCS1A01G056800 chr1B 57643372 57644057 685 False 771.0 771 86.8850 706 1430 1 chr1B.!!$F2 724
6 TraesCS1A01G056800 chr1B 57629586 57630251 665 False 715.0 715 86.1390 734 1430 1 chr1B.!!$F1 696
7 TraesCS1A01G056800 chr1B 57682377 57686827 4450 False 673.5 778 87.3055 734 1430 2 chr1B.!!$F5 696
8 TraesCS1A01G056800 chr2D 647103526 647104274 748 False 893.0 893 88.4060 1637 2381 1 chr2D.!!$F2 744
9 TraesCS1A01G056800 chr2D 8654736 8655239 503 False 270.0 292 93.7225 1 374 2 chr2D.!!$F3 373
10 TraesCS1A01G056800 chr4B 10912047 10912782 735 False 702.0 702 84.1830 1631 2381 1 chr4B.!!$F1 750
11 TraesCS1A01G056800 chr4B 10912922 10913922 1000 True 285.0 285 84.5890 1628 1917 2 chr4B.!!$R2 289
12 TraesCS1A01G056800 chr4A 743555861 743556515 654 True 394.5 438 89.7295 1631 2331 2 chr4A.!!$R2 700
13 TraesCS1A01G056800 chr2A 16476486 16477362 876 True 308.0 318 87.7080 1632 2190 2 chr2A.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.036765 GTGTGGGCCAACTCGTCATA 60.037 55.0 8.4 0.0 0.0 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 6196 0.397941 GATCGGATGGGAATGCCTGA 59.602 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 4.849329 CGGTAGTGTCTCCGCCGC 62.849 72.222 0.00 0.00 40.28 6.53
97 98 4.509737 GGTAGTGTCTCCGCCGCC 62.510 72.222 0.00 0.00 0.00 6.13
98 99 4.849329 GTAGTGTCTCCGCCGCCG 62.849 72.222 0.00 0.00 0.00 6.46
114 115 2.898840 CGGCCATCTTGCTCGCAT 60.899 61.111 2.24 0.00 0.00 4.73
115 116 2.475466 CGGCCATCTTGCTCGCATT 61.475 57.895 2.24 0.00 0.00 3.56
116 117 1.065273 GGCCATCTTGCTCGCATTG 59.935 57.895 0.00 0.00 0.00 2.82
117 118 1.065273 GCCATCTTGCTCGCATTGG 59.935 57.895 10.10 10.10 0.00 3.16
118 119 1.378882 GCCATCTTGCTCGCATTGGA 61.379 55.000 15.78 6.32 0.00 3.53
119 120 0.661552 CCATCTTGCTCGCATTGGAG 59.338 55.000 9.24 0.00 37.11 3.86
128 129 3.443045 GCATTGGAGCGTGTGGGG 61.443 66.667 0.00 0.00 0.00 4.96
129 130 2.751436 CATTGGAGCGTGTGGGGG 60.751 66.667 0.00 0.00 0.00 5.40
130 131 4.740822 ATTGGAGCGTGTGGGGGC 62.741 66.667 0.00 0.00 0.00 5.80
165 166 4.918201 CTTCCCGGCGAGATGGGC 62.918 72.222 9.30 0.00 45.60 5.36
173 174 4.598894 CGAGATGGGCGAGCTGGG 62.599 72.222 0.00 0.00 0.00 4.45
174 175 4.247380 GAGATGGGCGAGCTGGGG 62.247 72.222 0.00 0.00 0.00 4.96
190 191 3.840831 GGGGGCTGATTGCTTTTTC 57.159 52.632 0.00 0.00 42.39 2.29
191 192 1.269958 GGGGGCTGATTGCTTTTTCT 58.730 50.000 0.00 0.00 42.39 2.52
192 193 2.456577 GGGGGCTGATTGCTTTTTCTA 58.543 47.619 0.00 0.00 42.39 2.10
193 194 3.033909 GGGGGCTGATTGCTTTTTCTAT 58.966 45.455 0.00 0.00 42.39 1.98
194 195 4.215109 GGGGGCTGATTGCTTTTTCTATA 58.785 43.478 0.00 0.00 42.39 1.31
195 196 4.038042 GGGGGCTGATTGCTTTTTCTATAC 59.962 45.833 0.00 0.00 42.39 1.47
196 197 4.889995 GGGGCTGATTGCTTTTTCTATACT 59.110 41.667 0.00 0.00 42.39 2.12
197 198 5.221126 GGGGCTGATTGCTTTTTCTATACTG 60.221 44.000 0.00 0.00 42.39 2.74
198 199 5.590259 GGGCTGATTGCTTTTTCTATACTGA 59.410 40.000 0.00 0.00 42.39 3.41
199 200 6.458888 GGGCTGATTGCTTTTTCTATACTGAC 60.459 42.308 0.00 0.00 42.39 3.51
200 201 6.188175 GCTGATTGCTTTTTCTATACTGACG 58.812 40.000 0.00 0.00 38.95 4.35
201 202 6.183360 GCTGATTGCTTTTTCTATACTGACGT 60.183 38.462 0.00 0.00 38.95 4.34
202 203 7.060600 TGATTGCTTTTTCTATACTGACGTG 57.939 36.000 0.00 0.00 0.00 4.49
203 204 6.649141 TGATTGCTTTTTCTATACTGACGTGT 59.351 34.615 0.00 0.00 0.00 4.49
204 205 5.839262 TGCTTTTTCTATACTGACGTGTG 57.161 39.130 0.00 0.00 0.00 3.82
205 206 4.688879 TGCTTTTTCTATACTGACGTGTGG 59.311 41.667 0.00 0.00 0.00 4.17
206 207 4.092968 GCTTTTTCTATACTGACGTGTGGG 59.907 45.833 0.00 0.00 0.00 4.61
207 208 2.953466 TTCTATACTGACGTGTGGGC 57.047 50.000 0.00 0.00 0.00 5.36
208 209 1.108776 TCTATACTGACGTGTGGGCC 58.891 55.000 0.00 0.00 0.00 5.80
209 210 0.821517 CTATACTGACGTGTGGGCCA 59.178 55.000 0.00 0.00 0.00 5.36
210 211 1.206132 CTATACTGACGTGTGGGCCAA 59.794 52.381 8.40 0.00 0.00 4.52
211 212 0.321298 ATACTGACGTGTGGGCCAAC 60.321 55.000 8.40 2.12 0.00 3.77
212 213 1.404479 TACTGACGTGTGGGCCAACT 61.404 55.000 8.40 0.00 0.00 3.16
213 214 1.961277 CTGACGTGTGGGCCAACTC 60.961 63.158 8.40 7.09 0.00 3.01
214 215 3.041940 GACGTGTGGGCCAACTCG 61.042 66.667 28.62 28.62 41.49 4.18
215 216 3.857038 ACGTGTGGGCCAACTCGT 61.857 61.111 29.91 29.91 43.25 4.18
216 217 3.041940 CGTGTGGGCCAACTCGTC 61.042 66.667 23.62 6.02 33.58 4.20
217 218 2.110213 GTGTGGGCCAACTCGTCA 59.890 61.111 8.40 0.00 0.00 4.35
218 219 1.302511 GTGTGGGCCAACTCGTCAT 60.303 57.895 8.40 0.00 0.00 3.06
219 220 0.036765 GTGTGGGCCAACTCGTCATA 60.037 55.000 8.40 0.00 0.00 2.15
220 221 0.687920 TGTGGGCCAACTCGTCATAA 59.312 50.000 8.40 0.00 0.00 1.90
221 222 1.280710 TGTGGGCCAACTCGTCATAAT 59.719 47.619 8.40 0.00 0.00 1.28
222 223 2.290641 TGTGGGCCAACTCGTCATAATT 60.291 45.455 8.40 0.00 0.00 1.40
223 224 2.097466 GTGGGCCAACTCGTCATAATTG 59.903 50.000 8.40 0.00 0.00 2.32
224 225 2.026729 TGGGCCAACTCGTCATAATTGA 60.027 45.455 2.13 0.00 0.00 2.57
225 226 2.614057 GGGCCAACTCGTCATAATTGAG 59.386 50.000 4.39 0.00 35.85 3.02
226 227 3.270877 GGCCAACTCGTCATAATTGAGT 58.729 45.455 0.00 0.00 44.46 3.41
236 237 9.052759 ACTCGTCATAATTGAGTTTAAACAAGT 57.947 29.630 20.06 8.61 39.87 3.16
237 238 9.878599 CTCGTCATAATTGAGTTTAAACAAGTT 57.121 29.630 20.06 12.47 30.85 2.66
238 239 9.658475 TCGTCATAATTGAGTTTAAACAAGTTG 57.342 29.630 20.06 0.00 30.85 3.16
239 240 9.658475 CGTCATAATTGAGTTTAAACAAGTTGA 57.342 29.630 20.06 10.14 30.85 3.18
244 245 8.574196 AATTGAGTTTAAACAAGTTGAATCGG 57.426 30.769 20.06 0.00 0.00 4.18
245 246 6.928979 TGAGTTTAAACAAGTTGAATCGGA 57.071 33.333 20.06 0.00 0.00 4.55
246 247 6.721321 TGAGTTTAAACAAGTTGAATCGGAC 58.279 36.000 20.06 1.39 0.00 4.79
247 248 6.316640 TGAGTTTAAACAAGTTGAATCGGACA 59.683 34.615 20.06 0.00 0.00 4.02
248 249 6.492254 AGTTTAAACAAGTTGAATCGGACAC 58.508 36.000 20.06 0.00 0.00 3.67
249 250 6.317893 AGTTTAAACAAGTTGAATCGGACACT 59.682 34.615 20.06 0.00 0.00 3.55
250 251 6.687081 TTAAACAAGTTGAATCGGACACTT 57.313 33.333 10.54 0.00 0.00 3.16
251 252 5.576447 AAACAAGTTGAATCGGACACTTT 57.424 34.783 10.54 0.00 0.00 2.66
252 253 5.576447 AACAAGTTGAATCGGACACTTTT 57.424 34.783 10.54 0.00 0.00 2.27
253 254 5.576447 ACAAGTTGAATCGGACACTTTTT 57.424 34.783 10.54 0.00 0.00 1.94
254 255 6.687081 ACAAGTTGAATCGGACACTTTTTA 57.313 33.333 10.54 0.00 0.00 1.52
255 256 7.272037 ACAAGTTGAATCGGACACTTTTTAT 57.728 32.000 10.54 0.00 0.00 1.40
256 257 8.385898 ACAAGTTGAATCGGACACTTTTTATA 57.614 30.769 10.54 0.00 0.00 0.98
257 258 8.287503 ACAAGTTGAATCGGACACTTTTTATAC 58.712 33.333 10.54 0.00 0.00 1.47
258 259 7.972832 AGTTGAATCGGACACTTTTTATACA 57.027 32.000 0.00 0.00 0.00 2.29
259 260 8.561738 AGTTGAATCGGACACTTTTTATACAT 57.438 30.769 0.00 0.00 0.00 2.29
260 261 8.450964 AGTTGAATCGGACACTTTTTATACATG 58.549 33.333 0.00 0.00 0.00 3.21
261 262 7.315247 TGAATCGGACACTTTTTATACATGG 57.685 36.000 0.00 0.00 0.00 3.66
262 263 6.882140 TGAATCGGACACTTTTTATACATGGT 59.118 34.615 0.00 0.00 0.00 3.55
263 264 8.041919 TGAATCGGACACTTTTTATACATGGTA 58.958 33.333 0.00 0.00 0.00 3.25
264 265 8.433421 AATCGGACACTTTTTATACATGGTAG 57.567 34.615 0.00 0.00 0.00 3.18
265 266 6.938507 TCGGACACTTTTTATACATGGTAGT 58.061 36.000 0.00 0.00 0.00 2.73
266 267 7.388437 TCGGACACTTTTTATACATGGTAGTT 58.612 34.615 0.00 0.00 0.00 2.24
267 268 7.879160 TCGGACACTTTTTATACATGGTAGTTT 59.121 33.333 0.00 0.00 0.00 2.66
268 269 8.508875 CGGACACTTTTTATACATGGTAGTTTT 58.491 33.333 0.00 0.00 0.00 2.43
309 310 6.969828 AAAAATGGTAGTTTTTCGCACAAA 57.030 29.167 0.00 0.00 36.79 2.83
310 311 7.546778 AAAAATGGTAGTTTTTCGCACAAAT 57.453 28.000 0.00 0.00 36.79 2.32
311 312 7.546778 AAAATGGTAGTTTTTCGCACAAATT 57.453 28.000 0.00 0.00 0.00 1.82
312 313 7.546778 AAATGGTAGTTTTTCGCACAAATTT 57.453 28.000 0.00 0.00 0.00 1.82
313 314 5.957910 TGGTAGTTTTTCGCACAAATTTG 57.042 34.783 16.67 16.67 0.00 2.32
314 315 5.411781 TGGTAGTTTTTCGCACAAATTTGT 58.588 33.333 18.13 18.13 43.36 2.83
315 316 6.561614 TGGTAGTTTTTCGCACAAATTTGTA 58.438 32.000 22.87 5.84 39.91 2.41
316 317 7.033791 TGGTAGTTTTTCGCACAAATTTGTAA 58.966 30.769 22.87 11.71 39.91 2.41
317 318 7.544566 TGGTAGTTTTTCGCACAAATTTGTAAA 59.455 29.630 22.87 16.63 39.91 2.01
318 319 8.053653 GGTAGTTTTTCGCACAAATTTGTAAAG 58.946 33.333 22.87 16.19 39.91 1.85
319 320 7.589574 AGTTTTTCGCACAAATTTGTAAAGT 57.410 28.000 22.87 17.66 39.91 2.66
320 321 7.452231 AGTTTTTCGCACAAATTTGTAAAGTG 58.548 30.769 22.87 16.79 39.91 3.16
321 322 5.957910 TTTCGCACAAATTTGTAAAGTGG 57.042 34.783 22.87 11.06 39.91 4.00
322 323 4.640789 TCGCACAAATTTGTAAAGTGGT 57.359 36.364 22.87 0.00 39.91 4.16
323 324 5.752892 TCGCACAAATTTGTAAAGTGGTA 57.247 34.783 22.87 1.50 39.91 3.25
324 325 5.753744 TCGCACAAATTTGTAAAGTGGTAG 58.246 37.500 22.87 9.01 39.91 3.18
325 326 5.297278 TCGCACAAATTTGTAAAGTGGTAGT 59.703 36.000 22.87 0.00 39.91 2.73
326 327 5.974751 CGCACAAATTTGTAAAGTGGTAGTT 59.025 36.000 22.87 0.00 39.91 2.24
327 328 6.474102 CGCACAAATTTGTAAAGTGGTAGTTT 59.526 34.615 22.87 0.00 39.91 2.66
328 329 7.644551 CGCACAAATTTGTAAAGTGGTAGTTTA 59.355 33.333 22.87 0.00 39.91 2.01
329 330 9.471084 GCACAAATTTGTAAAGTGGTAGTTTAT 57.529 29.630 22.87 0.00 39.91 1.40
334 335 9.523168 AATTTGTAAAGTGGTAGTTTATAGGCA 57.477 29.630 0.00 0.00 0.00 4.75
335 336 7.910441 TTGTAAAGTGGTAGTTTATAGGCAC 57.090 36.000 0.00 0.00 0.00 5.01
336 337 6.101332 TGTAAAGTGGTAGTTTATAGGCACG 58.899 40.000 0.00 0.00 0.00 5.34
337 338 3.814005 AGTGGTAGTTTATAGGCACGG 57.186 47.619 0.00 0.00 0.00 4.94
338 339 3.102204 AGTGGTAGTTTATAGGCACGGT 58.898 45.455 0.00 0.00 0.00 4.83
339 340 3.516700 AGTGGTAGTTTATAGGCACGGTT 59.483 43.478 0.00 0.00 0.00 4.44
340 341 3.867493 GTGGTAGTTTATAGGCACGGTTC 59.133 47.826 0.00 0.00 0.00 3.62
341 342 3.118665 TGGTAGTTTATAGGCACGGTTCC 60.119 47.826 0.00 0.00 0.00 3.62
342 343 3.118665 GGTAGTTTATAGGCACGGTTCCA 60.119 47.826 0.00 0.00 0.00 3.53
343 344 3.926058 AGTTTATAGGCACGGTTCCAT 57.074 42.857 0.00 0.00 0.00 3.41
344 345 3.541632 AGTTTATAGGCACGGTTCCATG 58.458 45.455 0.00 0.00 0.00 3.66
345 346 3.199071 AGTTTATAGGCACGGTTCCATGA 59.801 43.478 0.00 0.00 0.00 3.07
346 347 3.916359 TTATAGGCACGGTTCCATGAA 57.084 42.857 0.00 0.00 0.00 2.57
347 348 4.431416 TTATAGGCACGGTTCCATGAAT 57.569 40.909 0.00 0.00 0.00 2.57
348 349 2.799126 TAGGCACGGTTCCATGAATT 57.201 45.000 0.00 0.00 0.00 2.17
349 350 1.176527 AGGCACGGTTCCATGAATTG 58.823 50.000 0.00 0.00 0.00 2.32
350 351 0.887933 GGCACGGTTCCATGAATTGT 59.112 50.000 0.00 0.00 0.00 2.71
351 352 1.402720 GGCACGGTTCCATGAATTGTG 60.403 52.381 0.00 0.00 34.77 3.33
352 353 1.402720 GCACGGTTCCATGAATTGTGG 60.403 52.381 0.00 0.87 38.11 4.17
353 354 1.885887 CACGGTTCCATGAATTGTGGT 59.114 47.619 0.00 0.00 37.96 4.16
354 355 3.078097 CACGGTTCCATGAATTGTGGTA 58.922 45.455 0.00 0.00 37.96 3.25
355 356 3.126858 CACGGTTCCATGAATTGTGGTAG 59.873 47.826 0.00 1.33 37.96 3.18
356 357 3.244770 ACGGTTCCATGAATTGTGGTAGT 60.245 43.478 0.00 1.79 37.96 2.73
357 358 3.756434 CGGTTCCATGAATTGTGGTAGTT 59.244 43.478 0.00 0.00 37.96 2.24
358 359 4.217550 CGGTTCCATGAATTGTGGTAGTTT 59.782 41.667 0.00 0.00 37.96 2.66
359 360 5.278758 CGGTTCCATGAATTGTGGTAGTTTT 60.279 40.000 0.00 0.00 37.96 2.43
360 361 6.521162 GGTTCCATGAATTGTGGTAGTTTTT 58.479 36.000 0.00 0.00 37.96 1.94
400 401 7.572523 AAAACTGATACCATGTATGATGTGG 57.427 36.000 0.00 0.00 38.96 4.17
401 402 5.233083 ACTGATACCATGTATGATGTGGG 57.767 43.478 0.00 0.00 37.33 4.61
402 403 4.907269 ACTGATACCATGTATGATGTGGGA 59.093 41.667 0.00 0.00 37.33 4.37
403 404 5.369404 ACTGATACCATGTATGATGTGGGAA 59.631 40.000 0.00 0.00 37.33 3.97
404 405 6.044754 ACTGATACCATGTATGATGTGGGAAT 59.955 38.462 0.00 0.00 37.33 3.01
405 406 6.851318 TGATACCATGTATGATGTGGGAATT 58.149 36.000 0.00 0.00 37.33 2.17
406 407 7.983363 TGATACCATGTATGATGTGGGAATTA 58.017 34.615 0.00 0.00 37.33 1.40
407 408 8.613923 TGATACCATGTATGATGTGGGAATTAT 58.386 33.333 0.00 0.00 37.33 1.28
408 409 8.812513 ATACCATGTATGATGTGGGAATTATG 57.187 34.615 0.00 0.00 37.33 1.90
409 410 6.613699 ACCATGTATGATGTGGGAATTATGT 58.386 36.000 0.00 0.00 37.33 2.29
410 411 6.491062 ACCATGTATGATGTGGGAATTATGTG 59.509 38.462 0.00 0.00 37.33 3.21
411 412 6.491062 CCATGTATGATGTGGGAATTATGTGT 59.509 38.462 0.00 0.00 0.00 3.72
412 413 7.014518 CCATGTATGATGTGGGAATTATGTGTT 59.985 37.037 0.00 0.00 0.00 3.32
413 414 7.332213 TGTATGATGTGGGAATTATGTGTTG 57.668 36.000 0.00 0.00 0.00 3.33
414 415 6.889177 TGTATGATGTGGGAATTATGTGTTGT 59.111 34.615 0.00 0.00 0.00 3.32
415 416 8.049721 TGTATGATGTGGGAATTATGTGTTGTA 58.950 33.333 0.00 0.00 0.00 2.41
416 417 9.066892 GTATGATGTGGGAATTATGTGTTGTAT 57.933 33.333 0.00 0.00 0.00 2.29
417 418 7.953005 TGATGTGGGAATTATGTGTTGTATT 57.047 32.000 0.00 0.00 0.00 1.89
418 419 7.995289 TGATGTGGGAATTATGTGTTGTATTC 58.005 34.615 0.00 0.00 0.00 1.75
419 420 6.767524 TGTGGGAATTATGTGTTGTATTCC 57.232 37.500 0.00 0.00 43.35 3.01
420 421 6.489603 TGTGGGAATTATGTGTTGTATTCCT 58.510 36.000 11.28 0.00 43.51 3.36
421 422 6.601613 TGTGGGAATTATGTGTTGTATTCCTC 59.398 38.462 11.28 6.93 43.51 3.71
422 423 6.601613 GTGGGAATTATGTGTTGTATTCCTCA 59.398 38.462 11.28 6.33 43.51 3.86
423 424 7.122055 GTGGGAATTATGTGTTGTATTCCTCAA 59.878 37.037 11.28 0.00 43.51 3.02
424 425 7.339212 TGGGAATTATGTGTTGTATTCCTCAAG 59.661 37.037 11.28 0.00 43.51 3.02
425 426 7.339466 GGGAATTATGTGTTGTATTCCTCAAGT 59.661 37.037 11.28 0.00 43.51 3.16
426 427 8.184192 GGAATTATGTGTTGTATTCCTCAAGTG 58.816 37.037 0.00 0.00 41.70 3.16
427 428 6.494893 TTATGTGTTGTATTCCTCAAGTGC 57.505 37.500 0.00 0.00 0.00 4.40
428 429 3.814625 TGTGTTGTATTCCTCAAGTGCA 58.185 40.909 0.00 0.00 0.00 4.57
429 430 4.203226 TGTGTTGTATTCCTCAAGTGCAA 58.797 39.130 0.00 0.00 0.00 4.08
430 431 4.642437 TGTGTTGTATTCCTCAAGTGCAAA 59.358 37.500 0.00 0.00 0.00 3.68
431 432 4.976116 GTGTTGTATTCCTCAAGTGCAAAC 59.024 41.667 0.00 0.00 0.00 2.93
432 433 4.219033 GTTGTATTCCTCAAGTGCAAACG 58.781 43.478 0.00 0.00 0.00 3.60
433 434 2.225491 TGTATTCCTCAAGTGCAAACGC 59.775 45.455 0.00 0.00 0.00 4.84
434 435 0.238289 ATTCCTCAAGTGCAAACGCG 59.762 50.000 3.53 3.53 0.00 6.01
435 436 2.387125 TTCCTCAAGTGCAAACGCGC 62.387 55.000 5.73 0.00 40.31 6.86
436 437 2.792543 CTCAAGTGCAAACGCGCG 60.793 61.111 30.96 30.96 44.77 6.86
437 438 3.506312 CTCAAGTGCAAACGCGCGT 62.506 57.895 32.73 32.73 44.77 6.01
438 439 2.153219 CTCAAGTGCAAACGCGCGTA 62.153 55.000 37.93 18.72 44.77 4.42
439 440 1.154488 CAAGTGCAAACGCGCGTAT 60.154 52.632 37.93 22.88 44.77 3.06
440 441 0.093875 CAAGTGCAAACGCGCGTATA 59.906 50.000 37.93 19.42 44.77 1.47
441 442 1.003851 AAGTGCAAACGCGCGTATAT 58.996 45.000 37.93 22.49 44.77 0.86
442 443 1.842720 AGTGCAAACGCGCGTATATA 58.157 45.000 37.93 20.19 44.77 0.86
443 444 2.400399 AGTGCAAACGCGCGTATATAT 58.600 42.857 37.93 18.26 44.77 0.86
444 445 2.154963 AGTGCAAACGCGCGTATATATG 59.845 45.455 37.93 27.23 44.77 1.78
445 446 2.154198 GTGCAAACGCGCGTATATATGA 59.846 45.455 37.93 13.62 33.35 2.15
446 447 2.990514 TGCAAACGCGCGTATATATGAT 59.009 40.909 37.93 15.63 33.35 2.45
447 448 3.181535 TGCAAACGCGCGTATATATGATG 60.182 43.478 37.93 22.64 33.35 3.07
448 449 3.181534 GCAAACGCGCGTATATATGATGT 60.182 43.478 37.93 13.90 0.00 3.06
449 450 4.030865 GCAAACGCGCGTATATATGATGTA 59.969 41.667 37.93 0.00 0.00 2.29
450 451 5.469387 CAAACGCGCGTATATATGATGTAC 58.531 41.667 37.93 0.00 0.00 2.90
451 452 4.345271 ACGCGCGTATATATGATGTACA 57.655 40.909 37.08 0.00 0.00 2.90
452 453 4.340263 ACGCGCGTATATATGATGTACAG 58.660 43.478 37.08 0.00 0.00 2.74
453 454 3.724257 CGCGCGTATATATGATGTACAGG 59.276 47.826 24.19 0.00 0.00 4.00
454 455 4.495184 CGCGCGTATATATGATGTACAGGA 60.495 45.833 24.19 0.00 0.00 3.86
455 456 4.970611 GCGCGTATATATGATGTACAGGAG 59.029 45.833 8.43 0.00 0.00 3.69
456 457 5.448768 GCGCGTATATATGATGTACAGGAGT 60.449 44.000 8.43 0.00 0.00 3.85
457 458 6.238293 GCGCGTATATATGATGTACAGGAGTA 60.238 42.308 8.43 0.00 0.00 2.59
458 459 7.345943 CGCGTATATATGATGTACAGGAGTAG 58.654 42.308 6.12 0.00 0.00 2.57
459 460 7.518529 CGCGTATATATGATGTACAGGAGTAGG 60.519 44.444 6.12 0.00 0.00 3.18
460 461 7.640852 CGTATATATGATGTACAGGAGTAGGC 58.359 42.308 0.33 0.00 0.00 3.93
461 462 7.499563 CGTATATATGATGTACAGGAGTAGGCT 59.500 40.741 0.33 0.00 0.00 4.58
462 463 9.848710 GTATATATGATGTACAGGAGTAGGCTA 57.151 37.037 0.33 0.00 0.00 3.93
464 465 5.991933 ATGATGTACAGGAGTAGGCTATG 57.008 43.478 0.33 0.00 0.00 2.23
465 466 5.061721 TGATGTACAGGAGTAGGCTATGA 57.938 43.478 0.33 0.00 0.00 2.15
466 467 4.827835 TGATGTACAGGAGTAGGCTATGAC 59.172 45.833 0.33 0.00 0.00 3.06
467 468 3.563223 TGTACAGGAGTAGGCTATGACC 58.437 50.000 0.00 2.09 0.00 4.02
468 469 3.204606 TGTACAGGAGTAGGCTATGACCT 59.795 47.826 0.00 4.49 44.31 3.85
469 470 3.406512 ACAGGAGTAGGCTATGACCTT 57.593 47.619 12.22 4.86 41.50 3.50
470 471 4.537945 ACAGGAGTAGGCTATGACCTTA 57.462 45.455 12.22 0.00 41.50 2.69
471 472 4.880164 ACAGGAGTAGGCTATGACCTTAA 58.120 43.478 12.22 0.00 41.50 1.85
472 473 4.650131 ACAGGAGTAGGCTATGACCTTAAC 59.350 45.833 12.22 0.00 41.50 2.01
473 474 4.896482 CAGGAGTAGGCTATGACCTTAACT 59.104 45.833 12.22 0.00 41.50 2.24
474 475 6.069331 CAGGAGTAGGCTATGACCTTAACTA 58.931 44.000 12.22 0.00 41.50 2.24
475 476 6.722129 CAGGAGTAGGCTATGACCTTAACTAT 59.278 42.308 12.22 0.00 41.50 2.12
476 477 7.889073 CAGGAGTAGGCTATGACCTTAACTATA 59.111 40.741 12.22 0.00 41.50 1.31
477 478 7.889600 AGGAGTAGGCTATGACCTTAACTATAC 59.110 40.741 0.00 0.00 41.50 1.47
478 479 7.668886 GGAGTAGGCTATGACCTTAACTATACA 59.331 40.741 0.00 0.00 41.50 2.29
479 480 9.075678 GAGTAGGCTATGACCTTAACTATACAA 57.924 37.037 0.00 0.00 41.50 2.41
480 481 9.080097 AGTAGGCTATGACCTTAACTATACAAG 57.920 37.037 0.00 0.00 41.50 3.16
481 482 9.075678 GTAGGCTATGACCTTAACTATACAAGA 57.924 37.037 0.00 0.00 41.50 3.02
482 483 7.953752 AGGCTATGACCTTAACTATACAAGAC 58.046 38.462 0.00 0.00 36.28 3.01
483 484 7.563924 AGGCTATGACCTTAACTATACAAGACA 59.436 37.037 0.00 0.00 36.28 3.41
484 485 8.202137 GGCTATGACCTTAACTATACAAGACAA 58.798 37.037 0.00 0.00 0.00 3.18
485 486 9.032420 GCTATGACCTTAACTATACAAGACAAC 57.968 37.037 0.00 0.00 0.00 3.32
489 490 8.746530 TGACCTTAACTATACAAGACAACTAGG 58.253 37.037 0.00 0.00 0.00 3.02
490 491 8.890410 ACCTTAACTATACAAGACAACTAGGA 57.110 34.615 0.00 0.00 0.00 2.94
491 492 8.968969 ACCTTAACTATACAAGACAACTAGGAG 58.031 37.037 0.00 0.00 0.00 3.69
492 493 8.414778 CCTTAACTATACAAGACAACTAGGAGG 58.585 40.741 0.00 0.00 0.00 4.30
493 494 8.890410 TTAACTATACAAGACAACTAGGAGGT 57.110 34.615 0.00 0.00 0.00 3.85
494 495 6.777213 ACTATACAAGACAACTAGGAGGTG 57.223 41.667 0.00 0.00 39.30 4.00
495 496 6.491383 ACTATACAAGACAACTAGGAGGTGA 58.509 40.000 0.00 0.00 33.95 4.02
496 497 6.952358 ACTATACAAGACAACTAGGAGGTGAA 59.048 38.462 0.00 0.00 33.95 3.18
497 498 4.338379 ACAAGACAACTAGGAGGTGAAC 57.662 45.455 0.00 0.00 33.95 3.18
498 499 3.071167 ACAAGACAACTAGGAGGTGAACC 59.929 47.826 0.00 0.00 33.95 3.62
499 500 2.258109 AGACAACTAGGAGGTGAACCC 58.742 52.381 0.00 0.00 33.95 4.11
500 501 1.975680 GACAACTAGGAGGTGAACCCA 59.024 52.381 0.00 0.00 33.95 4.51
501 502 2.370849 GACAACTAGGAGGTGAACCCAA 59.629 50.000 0.00 0.00 33.95 4.12
502 503 2.986728 ACAACTAGGAGGTGAACCCAAT 59.013 45.455 0.00 0.00 33.95 3.16
503 504 4.172807 ACAACTAGGAGGTGAACCCAATA 58.827 43.478 0.00 0.00 33.95 1.90
504 505 4.019591 ACAACTAGGAGGTGAACCCAATAC 60.020 45.833 0.00 0.00 33.95 1.89
505 506 3.798515 ACTAGGAGGTGAACCCAATACA 58.201 45.455 0.00 0.00 36.42 2.29
506 507 4.371681 ACTAGGAGGTGAACCCAATACAT 58.628 43.478 0.00 0.00 36.42 2.29
507 508 5.535029 ACTAGGAGGTGAACCCAATACATA 58.465 41.667 0.00 0.00 36.42 2.29
508 509 5.968167 ACTAGGAGGTGAACCCAATACATAA 59.032 40.000 0.00 0.00 36.42 1.90
509 510 5.789574 AGGAGGTGAACCCAATACATAAA 57.210 39.130 0.00 0.00 36.42 1.40
510 511 6.341408 AGGAGGTGAACCCAATACATAAAT 57.659 37.500 0.00 0.00 36.42 1.40
511 512 7.460214 AGGAGGTGAACCCAATACATAAATA 57.540 36.000 0.00 0.00 36.42 1.40
512 513 8.057246 AGGAGGTGAACCCAATACATAAATAT 57.943 34.615 0.00 0.00 36.42 1.28
513 514 7.944554 AGGAGGTGAACCCAATACATAAATATG 59.055 37.037 0.00 0.00 36.87 1.78
514 515 7.309194 GGAGGTGAACCCAATACATAAATATGC 60.309 40.741 0.00 0.00 35.31 3.14
515 516 7.066142 AGGTGAACCCAATACATAAATATGCA 58.934 34.615 0.00 0.00 35.31 3.96
516 517 7.014230 AGGTGAACCCAATACATAAATATGCAC 59.986 37.037 0.00 0.00 35.31 4.57
517 518 7.201866 GGTGAACCCAATACATAAATATGCACA 60.202 37.037 0.00 0.00 37.19 4.57
518 519 8.194104 GTGAACCCAATACATAAATATGCACAA 58.806 33.333 0.00 0.00 37.19 3.33
519 520 8.194104 TGAACCCAATACATAAATATGCACAAC 58.806 33.333 0.00 0.00 37.19 3.32
520 521 7.652524 ACCCAATACATAAATATGCACAACA 57.347 32.000 0.00 0.00 37.19 3.33
521 522 7.488322 ACCCAATACATAAATATGCACAACAC 58.512 34.615 0.00 0.00 37.19 3.32
522 523 7.123397 ACCCAATACATAAATATGCACAACACA 59.877 33.333 0.00 0.00 37.19 3.72
523 524 8.143193 CCCAATACATAAATATGCACAACACAT 58.857 33.333 0.00 0.00 37.19 3.21
559 560 8.838649 AATAGGATTTAAAGTAGCCAAATGGT 57.161 30.769 0.71 0.00 37.57 3.55
560 561 8.838649 ATAGGATTTAAAGTAGCCAAATGGTT 57.161 30.769 0.71 0.00 37.57 3.67
561 562 6.935167 AGGATTTAAAGTAGCCAAATGGTTG 58.065 36.000 0.71 0.00 37.57 3.77
562 563 6.723977 AGGATTTAAAGTAGCCAAATGGTTGA 59.276 34.615 0.71 0.00 36.83 3.18
563 564 7.035612 GGATTTAAAGTAGCCAAATGGTTGAG 58.964 38.462 0.71 0.00 36.83 3.02
564 565 7.093945 GGATTTAAAGTAGCCAAATGGTTGAGA 60.094 37.037 0.71 0.00 36.83 3.27
565 566 7.589958 TTTAAAGTAGCCAAATGGTTGAGAA 57.410 32.000 0.71 0.00 36.83 2.87
566 567 7.589958 TTAAAGTAGCCAAATGGTTGAGAAA 57.410 32.000 0.71 0.00 36.83 2.52
567 568 5.712152 AAGTAGCCAAATGGTTGAGAAAG 57.288 39.130 0.71 0.00 36.83 2.62
568 569 4.985538 AGTAGCCAAATGGTTGAGAAAGA 58.014 39.130 0.71 0.00 36.83 2.52
569 570 5.385198 AGTAGCCAAATGGTTGAGAAAGAA 58.615 37.500 0.71 0.00 36.83 2.52
570 571 4.590850 AGCCAAATGGTTGAGAAAGAAC 57.409 40.909 0.71 0.00 36.83 3.01
571 572 3.960102 AGCCAAATGGTTGAGAAAGAACA 59.040 39.130 0.71 0.00 36.83 3.18
572 573 4.590222 AGCCAAATGGTTGAGAAAGAACAT 59.410 37.500 0.71 0.00 36.83 2.71
573 574 5.070847 AGCCAAATGGTTGAGAAAGAACATT 59.929 36.000 0.71 0.00 36.83 2.71
574 575 5.759763 GCCAAATGGTTGAGAAAGAACATTT 59.240 36.000 0.71 0.00 36.83 2.32
575 576 6.928492 GCCAAATGGTTGAGAAAGAACATTTA 59.072 34.615 0.71 0.00 36.83 1.40
576 577 7.603784 GCCAAATGGTTGAGAAAGAACATTTAT 59.396 33.333 0.71 0.00 36.83 1.40
577 578 9.492973 CCAAATGGTTGAGAAAGAACATTTATT 57.507 29.630 0.00 0.00 36.83 1.40
580 581 9.696917 AATGGTTGAGAAAGAACATTTATTGTC 57.303 29.630 0.00 0.00 37.68 3.18
581 582 8.231692 TGGTTGAGAAAGAACATTTATTGTCA 57.768 30.769 0.00 0.00 37.68 3.58
582 583 8.690884 TGGTTGAGAAAGAACATTTATTGTCAA 58.309 29.630 0.00 0.00 37.68 3.18
583 584 9.696917 GGTTGAGAAAGAACATTTATTGTCAAT 57.303 29.630 3.06 3.06 37.38 2.57
654 655 8.929827 GTTAGAATCTAACTCTAACCTCCAAC 57.070 38.462 22.10 0.00 44.97 3.77
655 656 8.751242 GTTAGAATCTAACTCTAACCTCCAACT 58.249 37.037 22.10 0.00 44.97 3.16
656 657 7.412853 AGAATCTAACTCTAACCTCCAACTC 57.587 40.000 0.00 0.00 0.00 3.01
657 658 6.954684 AGAATCTAACTCTAACCTCCAACTCA 59.045 38.462 0.00 0.00 0.00 3.41
658 659 7.621683 AGAATCTAACTCTAACCTCCAACTCAT 59.378 37.037 0.00 0.00 0.00 2.90
659 660 8.840200 AATCTAACTCTAACCTCCAACTCATA 57.160 34.615 0.00 0.00 0.00 2.15
660 661 9.440761 AATCTAACTCTAACCTCCAACTCATAT 57.559 33.333 0.00 0.00 0.00 1.78
661 662 8.466617 TCTAACTCTAACCTCCAACTCATATC 57.533 38.462 0.00 0.00 0.00 1.63
662 663 6.487299 AACTCTAACCTCCAACTCATATCC 57.513 41.667 0.00 0.00 0.00 2.59
663 664 5.529289 ACTCTAACCTCCAACTCATATCCA 58.471 41.667 0.00 0.00 0.00 3.41
664 665 5.964477 ACTCTAACCTCCAACTCATATCCAA 59.036 40.000 0.00 0.00 0.00 3.53
665 666 6.443849 ACTCTAACCTCCAACTCATATCCAAA 59.556 38.462 0.00 0.00 0.00 3.28
666 667 6.650120 TCTAACCTCCAACTCATATCCAAAC 58.350 40.000 0.00 0.00 0.00 2.93
667 668 4.927267 ACCTCCAACTCATATCCAAACA 57.073 40.909 0.00 0.00 0.00 2.83
668 669 4.848357 ACCTCCAACTCATATCCAAACAG 58.152 43.478 0.00 0.00 0.00 3.16
669 670 4.202441 CCTCCAACTCATATCCAAACAGG 58.798 47.826 0.00 0.00 39.47 4.00
680 681 3.880047 TCCAAACAGGACCGTAGTATG 57.120 47.619 0.00 0.00 43.07 2.39
681 682 3.433343 TCCAAACAGGACCGTAGTATGA 58.567 45.455 0.00 0.00 43.07 2.15
682 683 3.446161 TCCAAACAGGACCGTAGTATGAG 59.554 47.826 0.00 0.00 43.07 2.90
683 684 3.194968 CCAAACAGGACCGTAGTATGAGT 59.805 47.826 0.00 0.00 41.22 3.41
684 685 4.400251 CCAAACAGGACCGTAGTATGAGTA 59.600 45.833 0.00 0.00 41.22 2.59
685 686 5.338365 CAAACAGGACCGTAGTATGAGTAC 58.662 45.833 0.00 0.00 0.00 2.73
686 687 4.226427 ACAGGACCGTAGTATGAGTACA 57.774 45.455 0.00 0.00 33.09 2.90
687 688 4.592942 ACAGGACCGTAGTATGAGTACAA 58.407 43.478 0.00 0.00 33.09 2.41
688 689 4.639310 ACAGGACCGTAGTATGAGTACAAG 59.361 45.833 0.00 0.00 33.09 3.16
689 690 4.639310 CAGGACCGTAGTATGAGTACAAGT 59.361 45.833 0.00 0.00 33.09 3.16
690 691 4.639310 AGGACCGTAGTATGAGTACAAGTG 59.361 45.833 0.00 0.00 33.09 3.16
691 692 4.201990 GGACCGTAGTATGAGTACAAGTGG 60.202 50.000 0.00 0.00 33.09 4.00
692 693 4.592942 ACCGTAGTATGAGTACAAGTGGA 58.407 43.478 0.00 0.00 33.09 4.02
693 694 4.639310 ACCGTAGTATGAGTACAAGTGGAG 59.361 45.833 0.00 0.00 33.09 3.86
694 695 4.639310 CCGTAGTATGAGTACAAGTGGAGT 59.361 45.833 0.00 0.00 33.09 3.85
695 696 5.125097 CCGTAGTATGAGTACAAGTGGAGTT 59.875 44.000 0.00 0.00 33.09 3.01
696 697 6.256686 CGTAGTATGAGTACAAGTGGAGTTC 58.743 44.000 0.00 0.00 33.09 3.01
697 698 5.662674 AGTATGAGTACAAGTGGAGTTCC 57.337 43.478 0.00 0.00 33.09 3.62
698 699 3.983044 ATGAGTACAAGTGGAGTTCCC 57.017 47.619 0.00 0.00 34.29 3.97
699 700 1.616865 TGAGTACAAGTGGAGTTCCCG 59.383 52.381 0.00 0.00 37.93 5.14
700 701 1.617357 GAGTACAAGTGGAGTTCCCGT 59.383 52.381 0.00 0.00 37.93 5.28
701 702 1.343465 AGTACAAGTGGAGTTCCCGTG 59.657 52.381 0.00 0.00 37.93 4.94
702 703 0.682852 TACAAGTGGAGTTCCCGTGG 59.317 55.000 0.00 0.00 37.93 4.94
703 704 1.342672 ACAAGTGGAGTTCCCGTGGT 61.343 55.000 0.00 0.00 37.93 4.16
704 705 0.179029 CAAGTGGAGTTCCCGTGGTT 60.179 55.000 0.00 0.00 37.93 3.67
723 724 1.323271 TGGCAAGCAACGGGACAAAA 61.323 50.000 0.00 0.00 0.00 2.44
761 763 1.372251 AACGAGACAGAGCGCAGTG 60.372 57.895 11.47 9.07 0.00 3.66
767 769 1.280886 GACAGAGCGCAGTGAGTGTG 61.281 60.000 11.47 0.00 39.92 3.82
771 773 0.598680 GAGCGCAGTGAGTGTGAGTT 60.599 55.000 11.47 0.00 39.20 3.01
786 795 3.314080 TGTGAGTTTAAAAGCCCAAGTCG 59.686 43.478 0.00 0.00 0.00 4.18
833 842 0.667487 ACCGCGTCTTCATCAGTGTG 60.667 55.000 4.92 0.00 0.00 3.82
876 911 3.939837 CTGCTTTCTCGCTCGCCCA 62.940 63.158 0.00 0.00 0.00 5.36
877 912 2.742372 GCTTTCTCGCTCGCCCAA 60.742 61.111 0.00 0.00 0.00 4.12
878 913 3.028366 GCTTTCTCGCTCGCCCAAC 62.028 63.158 0.00 0.00 0.00 3.77
879 914 2.358247 TTTCTCGCTCGCCCAACC 60.358 61.111 0.00 0.00 0.00 3.77
891 926 1.470098 CGCCCAACCTCTTTGATTCTG 59.530 52.381 0.00 0.00 37.39 3.02
894 929 1.821136 CCAACCTCTTTGATTCTGGCC 59.179 52.381 0.00 0.00 37.39 5.36
895 930 2.556114 CCAACCTCTTTGATTCTGGCCT 60.556 50.000 3.32 0.00 37.39 5.19
913 948 6.099701 TCTGGCCTTATATATACGGATTGCAT 59.900 38.462 17.33 0.00 0.00 3.96
948 983 0.321122 CACTCTGCTTCTCACCCACC 60.321 60.000 0.00 0.00 0.00 4.61
971 1012 1.915769 GCTCCACCTCCACTCCACT 60.916 63.158 0.00 0.00 0.00 4.00
1023 1071 1.663074 GCAGAGGATCGTGATCGCC 60.663 63.158 0.00 0.00 42.67 5.54
1234 1282 0.109226 CGACGTCAAGAAGGAGGACC 60.109 60.000 17.16 0.00 0.00 4.46
1461 5287 5.405935 AGGAATTTGTTGGTTAATCCTGC 57.594 39.130 0.00 0.00 37.07 4.85
1471 5297 1.260561 GTTAATCCTGCCGCGTGTATG 59.739 52.381 4.92 0.00 0.00 2.39
1477 5303 1.202325 CCTGCCGCGTGTATGTACTAA 60.202 52.381 4.92 0.00 0.00 2.24
1478 5304 2.117137 CTGCCGCGTGTATGTACTAAG 58.883 52.381 4.92 0.00 0.00 2.18
1490 5323 5.655090 TGTATGTACTAAGGTTCAGCTAGCA 59.345 40.000 18.83 0.00 0.00 3.49
1531 5366 4.357918 AGTTACTGGCATCAAGTTCAGT 57.642 40.909 0.00 0.00 42.32 3.41
1597 5432 2.620115 CTGCAGTTCAAAGCCTCAAAGA 59.380 45.455 5.25 0.00 0.00 2.52
1635 5470 1.226717 GACCGTCGGCATGAGAGTC 60.227 63.158 12.28 0.00 0.00 3.36
1680 5515 6.449635 ACTCAAACTGATTGCACACTTTAA 57.550 33.333 0.00 0.00 38.98 1.52
1768 5603 1.074248 GGCCGGACAGGGAAGAAAA 59.926 57.895 5.05 0.00 41.48 2.29
1826 5661 6.631016 ACTGCTCGTGAATTCACTATTCTTA 58.369 36.000 30.45 12.98 44.34 2.10
1838 5673 6.786967 TCACTATTCTTAACAGGGGTCTAC 57.213 41.667 0.00 0.00 0.00 2.59
1842 5677 6.729569 ACTATTCTTAACAGGGGTCTACTTGT 59.270 38.462 0.00 0.00 0.00 3.16
1897 5732 5.681543 GCTAAAGTCGTTTGGAGTGAAAAAG 59.318 40.000 0.00 0.00 0.00 2.27
1900 5735 5.729974 AGTCGTTTGGAGTGAAAAAGTAC 57.270 39.130 0.00 0.00 0.00 2.73
1957 6117 4.284829 TGCAATGTCTCAATGACCACTA 57.715 40.909 0.00 0.00 44.75 2.74
1980 6140 0.179113 CAACACCAGGTTTGCACACC 60.179 55.000 14.44 14.44 37.72 4.16
1983 6143 1.077357 ACCAGGTTTGCACACCGAA 60.077 52.632 16.17 0.00 42.33 4.30
1995 6155 1.675310 CACCGAAATGCAGCCCAGA 60.675 57.895 0.00 0.00 0.00 3.86
1996 6156 1.377725 ACCGAAATGCAGCCCAGAG 60.378 57.895 0.00 0.00 0.00 3.35
1997 6157 2.117156 CCGAAATGCAGCCCAGAGG 61.117 63.158 0.00 0.00 0.00 3.69
2000 6160 1.316651 GAAATGCAGCCCAGAGGATC 58.683 55.000 0.00 0.00 33.47 3.36
2034 6196 7.123547 ACGTAGAATCAGGAGAGAGAGAAAAAT 59.876 37.037 0.00 0.00 0.00 1.82
2076 6238 4.493220 CGTTTTTCAATCAGGCGATCTCTC 60.493 45.833 0.00 0.00 0.00 3.20
2089 6251 4.202161 GGCGATCTCTCTCCTTATGTTTCA 60.202 45.833 0.00 0.00 0.00 2.69
2290 6464 2.062971 AGGCTGCCTATTGGAACATG 57.937 50.000 21.98 0.00 30.53 3.21
2294 6468 3.385755 GGCTGCCTATTGGAACATGAATT 59.614 43.478 12.43 0.00 39.30 2.17
2338 6548 6.881602 CAGGAAGCCAATTTCTAAACTAGACT 59.118 38.462 0.00 0.00 33.84 3.24
2352 6562 4.357918 ACTAGACTGCCTGTGTTCAAAT 57.642 40.909 0.00 0.00 0.00 2.32
2353 6563 4.319177 ACTAGACTGCCTGTGTTCAAATC 58.681 43.478 0.00 0.00 0.00 2.17
2354 6564 2.508526 AGACTGCCTGTGTTCAAATCC 58.491 47.619 0.00 0.00 0.00 3.01
2355 6565 2.107204 AGACTGCCTGTGTTCAAATCCT 59.893 45.455 0.00 0.00 0.00 3.24
2401 6613 9.709495 TTATATATACATACCCGTTGTTGTTCC 57.291 33.333 0.00 0.00 0.00 3.62
2402 6614 2.642154 ACATACCCGTTGTTGTTCCA 57.358 45.000 0.00 0.00 0.00 3.53
2403 6615 2.500229 ACATACCCGTTGTTGTTCCAG 58.500 47.619 0.00 0.00 0.00 3.86
2404 6616 2.158726 ACATACCCGTTGTTGTTCCAGT 60.159 45.455 0.00 0.00 0.00 4.00
2405 6617 1.956297 TACCCGTTGTTGTTCCAGTG 58.044 50.000 0.00 0.00 0.00 3.66
2406 6618 0.750182 ACCCGTTGTTGTTCCAGTGG 60.750 55.000 1.40 1.40 0.00 4.00
2407 6619 0.750182 CCCGTTGTTGTTCCAGTGGT 60.750 55.000 9.54 0.00 0.00 4.16
2408 6620 1.099689 CCGTTGTTGTTCCAGTGGTT 58.900 50.000 9.54 0.00 0.00 3.67
2409 6621 1.202245 CCGTTGTTGTTCCAGTGGTTG 60.202 52.381 9.54 0.00 0.00 3.77
2410 6622 1.797348 CGTTGTTGTTCCAGTGGTTGC 60.797 52.381 9.54 1.31 0.00 4.17
2411 6623 1.476488 GTTGTTGTTCCAGTGGTTGCT 59.524 47.619 9.54 0.00 0.00 3.91
2412 6624 1.102154 TGTTGTTCCAGTGGTTGCTG 58.898 50.000 9.54 0.00 36.31 4.41
2413 6625 1.340502 TGTTGTTCCAGTGGTTGCTGA 60.341 47.619 9.54 0.00 38.70 4.26
2414 6626 1.334869 GTTGTTCCAGTGGTTGCTGAG 59.665 52.381 9.54 0.00 38.70 3.35
2415 6627 0.179020 TGTTCCAGTGGTTGCTGAGG 60.179 55.000 9.54 0.00 38.70 3.86
2416 6628 1.228245 TTCCAGTGGTTGCTGAGGC 60.228 57.895 9.54 0.00 38.70 4.70
2428 6640 3.354948 TGCTGAGGCATTGTCTATGTT 57.645 42.857 0.00 0.00 44.28 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.492773 GCCATGGCCATGCACTACC 61.493 63.158 36.08 16.89 37.49 3.18
97 98 2.475466 AATGCGAGCAAGATGGCCG 61.475 57.895 0.57 0.00 0.00 6.13
98 99 1.065273 CAATGCGAGCAAGATGGCC 59.935 57.895 0.57 0.00 0.00 5.36
99 100 1.065273 CCAATGCGAGCAAGATGGC 59.935 57.895 0.57 0.00 0.00 4.40
100 101 0.661552 CTCCAATGCGAGCAAGATGG 59.338 55.000 16.67 16.67 32.84 3.51
111 112 3.443045 CCCCACACGCTCCAATGC 61.443 66.667 0.00 0.00 0.00 3.56
112 113 2.751436 CCCCCACACGCTCCAATG 60.751 66.667 0.00 0.00 0.00 2.82
113 114 4.740822 GCCCCCACACGCTCCAAT 62.741 66.667 0.00 0.00 0.00 3.16
147 148 4.241555 CCCATCTCGCCGGGAAGG 62.242 72.222 0.16 0.16 46.34 3.46
148 149 4.918201 GCCCATCTCGCCGGGAAG 62.918 72.222 2.18 0.00 46.34 3.46
156 157 4.598894 CCCAGCTCGCCCATCTCG 62.599 72.222 0.00 0.00 0.00 4.04
157 158 4.247380 CCCCAGCTCGCCCATCTC 62.247 72.222 0.00 0.00 0.00 2.75
176 177 6.183360 ACGTCAGTATAGAAAAAGCAATCAGC 60.183 38.462 0.00 0.00 46.19 4.26
177 178 7.148573 ACACGTCAGTATAGAAAAAGCAATCAG 60.149 37.037 0.00 0.00 0.00 2.90
178 179 6.649141 ACACGTCAGTATAGAAAAAGCAATCA 59.351 34.615 0.00 0.00 0.00 2.57
179 180 6.955963 CACACGTCAGTATAGAAAAAGCAATC 59.044 38.462 0.00 0.00 0.00 2.67
180 181 6.128282 CCACACGTCAGTATAGAAAAAGCAAT 60.128 38.462 0.00 0.00 0.00 3.56
181 182 5.178623 CCACACGTCAGTATAGAAAAAGCAA 59.821 40.000 0.00 0.00 0.00 3.91
182 183 4.688879 CCACACGTCAGTATAGAAAAAGCA 59.311 41.667 0.00 0.00 0.00 3.91
183 184 4.092968 CCCACACGTCAGTATAGAAAAAGC 59.907 45.833 0.00 0.00 0.00 3.51
184 185 4.092968 GCCCACACGTCAGTATAGAAAAAG 59.907 45.833 0.00 0.00 0.00 2.27
185 186 3.998341 GCCCACACGTCAGTATAGAAAAA 59.002 43.478 0.00 0.00 0.00 1.94
186 187 3.592059 GCCCACACGTCAGTATAGAAAA 58.408 45.455 0.00 0.00 0.00 2.29
187 188 2.093869 GGCCCACACGTCAGTATAGAAA 60.094 50.000 0.00 0.00 0.00 2.52
188 189 1.479323 GGCCCACACGTCAGTATAGAA 59.521 52.381 0.00 0.00 0.00 2.10
189 190 1.108776 GGCCCACACGTCAGTATAGA 58.891 55.000 0.00 0.00 0.00 1.98
190 191 0.821517 TGGCCCACACGTCAGTATAG 59.178 55.000 0.00 0.00 0.00 1.31
191 192 1.066716 GTTGGCCCACACGTCAGTATA 60.067 52.381 0.00 0.00 0.00 1.47
192 193 0.321298 GTTGGCCCACACGTCAGTAT 60.321 55.000 0.00 0.00 0.00 2.12
193 194 1.070105 GTTGGCCCACACGTCAGTA 59.930 57.895 0.00 0.00 0.00 2.74
194 195 2.203153 GTTGGCCCACACGTCAGT 60.203 61.111 0.00 0.00 0.00 3.41
195 196 1.961277 GAGTTGGCCCACACGTCAG 60.961 63.158 10.02 0.00 0.00 3.51
196 197 2.110213 GAGTTGGCCCACACGTCA 59.890 61.111 10.02 0.00 0.00 4.35
197 198 3.041940 CGAGTTGGCCCACACGTC 61.042 66.667 16.95 2.04 0.00 4.34
198 199 3.802418 GACGAGTTGGCCCACACGT 62.802 63.158 27.86 27.86 45.07 4.49
199 200 3.041940 GACGAGTTGGCCCACACG 61.042 66.667 22.19 22.19 36.87 4.49
200 201 0.036765 TATGACGAGTTGGCCCACAC 60.037 55.000 10.02 1.61 0.00 3.82
201 202 0.687920 TTATGACGAGTTGGCCCACA 59.312 50.000 10.02 0.00 0.00 4.17
202 203 2.038387 ATTATGACGAGTTGGCCCAC 57.962 50.000 0.00 0.00 0.00 4.61
203 204 2.026729 TCAATTATGACGAGTTGGCCCA 60.027 45.455 0.00 0.00 0.00 5.36
204 205 2.614057 CTCAATTATGACGAGTTGGCCC 59.386 50.000 0.00 0.00 0.00 5.80
205 206 3.270877 ACTCAATTATGACGAGTTGGCC 58.729 45.455 0.00 0.00 36.62 5.36
206 207 4.946784 AACTCAATTATGACGAGTTGGC 57.053 40.909 7.18 0.00 45.73 4.52
207 208 8.286800 TGTTTAAACTCAATTATGACGAGTTGG 58.713 33.333 18.72 0.00 46.53 3.77
208 209 9.658475 TTGTTTAAACTCAATTATGACGAGTTG 57.342 29.630 18.72 0.00 46.53 3.16
210 211 9.052759 ACTTGTTTAAACTCAATTATGACGAGT 57.947 29.630 18.72 1.81 41.70 4.18
211 212 9.878599 AACTTGTTTAAACTCAATTATGACGAG 57.121 29.630 18.72 1.22 0.00 4.18
212 213 9.658475 CAACTTGTTTAAACTCAATTATGACGA 57.342 29.630 18.72 0.00 0.00 4.20
213 214 9.658475 TCAACTTGTTTAAACTCAATTATGACG 57.342 29.630 18.72 0.00 0.00 4.35
218 219 9.672086 CCGATTCAACTTGTTTAAACTCAATTA 57.328 29.630 18.72 0.00 0.00 1.40
219 220 8.410141 TCCGATTCAACTTGTTTAAACTCAATT 58.590 29.630 18.72 6.01 0.00 2.32
220 221 7.860872 GTCCGATTCAACTTGTTTAAACTCAAT 59.139 33.333 18.72 7.90 0.00 2.57
221 222 7.148222 TGTCCGATTCAACTTGTTTAAACTCAA 60.148 33.333 18.72 5.60 0.00 3.02
222 223 6.316640 TGTCCGATTCAACTTGTTTAAACTCA 59.683 34.615 18.72 5.42 0.00 3.41
223 224 6.631636 GTGTCCGATTCAACTTGTTTAAACTC 59.368 38.462 18.72 5.12 0.00 3.01
224 225 6.317893 AGTGTCCGATTCAACTTGTTTAAACT 59.682 34.615 18.72 0.00 0.00 2.66
225 226 6.492254 AGTGTCCGATTCAACTTGTTTAAAC 58.508 36.000 11.54 11.54 0.00 2.01
226 227 6.687081 AGTGTCCGATTCAACTTGTTTAAA 57.313 33.333 0.00 0.00 0.00 1.52
227 228 6.687081 AAGTGTCCGATTCAACTTGTTTAA 57.313 33.333 0.00 0.00 0.00 1.52
228 229 6.687081 AAAGTGTCCGATTCAACTTGTTTA 57.313 33.333 0.00 0.00 0.00 2.01
229 230 5.576447 AAAGTGTCCGATTCAACTTGTTT 57.424 34.783 0.00 0.00 0.00 2.83
230 231 5.576447 AAAAGTGTCCGATTCAACTTGTT 57.424 34.783 0.00 0.00 0.00 2.83
231 232 5.576447 AAAAAGTGTCCGATTCAACTTGT 57.424 34.783 0.00 0.00 0.00 3.16
232 233 8.286800 TGTATAAAAAGTGTCCGATTCAACTTG 58.713 33.333 0.00 0.00 0.00 3.16
233 234 8.385898 TGTATAAAAAGTGTCCGATTCAACTT 57.614 30.769 0.00 0.00 0.00 2.66
234 235 7.972832 TGTATAAAAAGTGTCCGATTCAACT 57.027 32.000 0.00 0.00 0.00 3.16
235 236 7.696453 CCATGTATAAAAAGTGTCCGATTCAAC 59.304 37.037 0.00 0.00 0.00 3.18
236 237 7.392113 ACCATGTATAAAAAGTGTCCGATTCAA 59.608 33.333 0.00 0.00 0.00 2.69
237 238 6.882140 ACCATGTATAAAAAGTGTCCGATTCA 59.118 34.615 0.00 0.00 0.00 2.57
238 239 7.316544 ACCATGTATAAAAAGTGTCCGATTC 57.683 36.000 0.00 0.00 0.00 2.52
239 240 8.044908 ACTACCATGTATAAAAAGTGTCCGATT 58.955 33.333 0.00 0.00 0.00 3.34
240 241 7.562135 ACTACCATGTATAAAAAGTGTCCGAT 58.438 34.615 0.00 0.00 0.00 4.18
241 242 6.938507 ACTACCATGTATAAAAAGTGTCCGA 58.061 36.000 0.00 0.00 0.00 4.55
242 243 7.605410 AACTACCATGTATAAAAAGTGTCCG 57.395 36.000 0.00 0.00 0.00 4.79
286 287 6.969828 TTTGTGCGAAAAACTACCATTTTT 57.030 29.167 0.00 0.00 42.94 1.94
287 288 7.546778 AATTTGTGCGAAAAACTACCATTTT 57.453 28.000 0.00 0.00 33.13 1.82
288 289 7.065204 ACAAATTTGTGCGAAAAACTACCATTT 59.935 29.630 22.71 0.00 40.49 2.32
289 290 6.536941 ACAAATTTGTGCGAAAAACTACCATT 59.463 30.769 22.71 0.00 40.49 3.16
290 291 6.045955 ACAAATTTGTGCGAAAAACTACCAT 58.954 32.000 22.71 0.00 40.49 3.55
291 292 5.411781 ACAAATTTGTGCGAAAAACTACCA 58.588 33.333 22.71 0.00 40.49 3.25
292 293 5.959652 ACAAATTTGTGCGAAAAACTACC 57.040 34.783 22.71 0.00 40.49 3.18
293 294 8.588789 ACTTTACAAATTTGTGCGAAAAACTAC 58.411 29.630 29.72 0.00 42.31 2.73
294 295 8.587950 CACTTTACAAATTTGTGCGAAAAACTA 58.412 29.630 29.72 6.55 42.31 2.24
295 296 7.412455 CCACTTTACAAATTTGTGCGAAAAACT 60.412 33.333 29.72 10.69 42.31 2.66
296 297 6.680758 CCACTTTACAAATTTGTGCGAAAAAC 59.319 34.615 29.72 0.00 42.31 2.43
297 298 6.369065 ACCACTTTACAAATTTGTGCGAAAAA 59.631 30.769 29.72 20.51 42.31 1.94
298 299 5.869888 ACCACTTTACAAATTTGTGCGAAAA 59.130 32.000 29.72 20.82 42.31 2.29
299 300 5.411781 ACCACTTTACAAATTTGTGCGAAA 58.588 33.333 29.72 21.12 42.31 3.46
300 301 5.000012 ACCACTTTACAAATTTGTGCGAA 58.000 34.783 29.72 20.05 42.31 4.70
301 302 4.640789 ACCACTTTACAAATTTGTGCGA 57.359 36.364 29.72 14.96 42.31 5.10
302 303 5.516090 ACTACCACTTTACAAATTTGTGCG 58.484 37.500 29.72 19.89 42.31 5.34
303 304 7.764695 AAACTACCACTTTACAAATTTGTGC 57.235 32.000 29.72 0.00 42.31 4.57
308 309 9.523168 TGCCTATAAACTACCACTTTACAAATT 57.477 29.630 0.00 0.00 0.00 1.82
309 310 8.953313 GTGCCTATAAACTACCACTTTACAAAT 58.047 33.333 0.00 0.00 0.00 2.32
310 311 7.118101 CGTGCCTATAAACTACCACTTTACAAA 59.882 37.037 0.00 0.00 0.00 2.83
311 312 6.591062 CGTGCCTATAAACTACCACTTTACAA 59.409 38.462 0.00 0.00 0.00 2.41
312 313 6.101332 CGTGCCTATAAACTACCACTTTACA 58.899 40.000 0.00 0.00 0.00 2.41
313 314 5.521372 CCGTGCCTATAAACTACCACTTTAC 59.479 44.000 0.00 0.00 0.00 2.01
314 315 5.187576 ACCGTGCCTATAAACTACCACTTTA 59.812 40.000 0.00 0.00 0.00 1.85
315 316 4.019950 ACCGTGCCTATAAACTACCACTTT 60.020 41.667 0.00 0.00 0.00 2.66
316 317 3.516700 ACCGTGCCTATAAACTACCACTT 59.483 43.478 0.00 0.00 0.00 3.16
317 318 3.102204 ACCGTGCCTATAAACTACCACT 58.898 45.455 0.00 0.00 0.00 4.00
318 319 3.531934 ACCGTGCCTATAAACTACCAC 57.468 47.619 0.00 0.00 0.00 4.16
319 320 3.118665 GGAACCGTGCCTATAAACTACCA 60.119 47.826 0.00 0.00 0.00 3.25
320 321 3.118665 TGGAACCGTGCCTATAAACTACC 60.119 47.826 0.00 0.00 0.00 3.18
321 322 4.127566 TGGAACCGTGCCTATAAACTAC 57.872 45.455 0.00 0.00 0.00 2.73
322 323 4.406326 TCATGGAACCGTGCCTATAAACTA 59.594 41.667 8.06 0.00 33.28 2.24
323 324 3.199071 TCATGGAACCGTGCCTATAAACT 59.801 43.478 8.06 0.00 33.28 2.66
324 325 3.537580 TCATGGAACCGTGCCTATAAAC 58.462 45.455 8.06 0.00 33.28 2.01
325 326 3.916359 TCATGGAACCGTGCCTATAAA 57.084 42.857 8.06 0.00 33.28 1.40
326 327 3.916359 TTCATGGAACCGTGCCTATAA 57.084 42.857 8.06 0.00 33.28 0.98
327 328 4.133820 CAATTCATGGAACCGTGCCTATA 58.866 43.478 8.06 0.00 33.28 1.31
328 329 2.951642 CAATTCATGGAACCGTGCCTAT 59.048 45.455 8.06 0.27 33.28 2.57
329 330 2.290641 ACAATTCATGGAACCGTGCCTA 60.291 45.455 8.06 0.00 33.28 3.93
330 331 1.176527 CAATTCATGGAACCGTGCCT 58.823 50.000 8.06 0.00 33.28 4.75
331 332 0.887933 ACAATTCATGGAACCGTGCC 59.112 50.000 8.06 0.00 33.28 5.01
332 333 1.402720 CCACAATTCATGGAACCGTGC 60.403 52.381 8.06 0.00 39.87 5.34
333 334 1.885887 ACCACAATTCATGGAACCGTG 59.114 47.619 11.51 6.71 39.87 4.94
334 335 2.286365 ACCACAATTCATGGAACCGT 57.714 45.000 11.51 0.00 39.87 4.83
335 336 3.343617 ACTACCACAATTCATGGAACCG 58.656 45.455 11.51 1.19 39.87 4.44
336 337 5.722021 AAACTACCACAATTCATGGAACC 57.278 39.130 11.51 0.00 39.87 3.62
375 376 7.068593 CCCACATCATACATGGTATCAGTTTTT 59.931 37.037 0.00 0.00 0.00 1.94
376 377 6.547141 CCCACATCATACATGGTATCAGTTTT 59.453 38.462 0.00 0.00 0.00 2.43
377 378 6.064060 CCCACATCATACATGGTATCAGTTT 58.936 40.000 0.00 0.00 0.00 2.66
378 379 5.369404 TCCCACATCATACATGGTATCAGTT 59.631 40.000 0.00 0.00 0.00 3.16
379 380 4.907269 TCCCACATCATACATGGTATCAGT 59.093 41.667 0.00 0.00 0.00 3.41
380 381 5.488262 TCCCACATCATACATGGTATCAG 57.512 43.478 0.00 0.00 0.00 2.90
381 382 5.903198 TTCCCACATCATACATGGTATCA 57.097 39.130 0.00 0.00 0.00 2.15
382 383 8.896744 CATAATTCCCACATCATACATGGTATC 58.103 37.037 0.00 0.00 0.00 2.24
383 384 8.393259 ACATAATTCCCACATCATACATGGTAT 58.607 33.333 0.00 0.00 0.00 2.73
384 385 7.665145 CACATAATTCCCACATCATACATGGTA 59.335 37.037 0.00 0.00 0.00 3.25
385 386 6.491062 CACATAATTCCCACATCATACATGGT 59.509 38.462 0.00 0.00 0.00 3.55
386 387 6.491062 ACACATAATTCCCACATCATACATGG 59.509 38.462 0.00 0.00 0.00 3.66
387 388 7.514784 ACACATAATTCCCACATCATACATG 57.485 36.000 0.00 0.00 0.00 3.21
388 389 7.560991 ACAACACATAATTCCCACATCATACAT 59.439 33.333 0.00 0.00 0.00 2.29
389 390 6.889177 ACAACACATAATTCCCACATCATACA 59.111 34.615 0.00 0.00 0.00 2.29
390 391 7.333528 ACAACACATAATTCCCACATCATAC 57.666 36.000 0.00 0.00 0.00 2.39
391 392 9.639563 AATACAACACATAATTCCCACATCATA 57.360 29.630 0.00 0.00 0.00 2.15
392 393 8.537728 AATACAACACATAATTCCCACATCAT 57.462 30.769 0.00 0.00 0.00 2.45
393 394 7.068103 GGAATACAACACATAATTCCCACATCA 59.932 37.037 2.19 0.00 40.93 3.07
394 395 7.285401 AGGAATACAACACATAATTCCCACATC 59.715 37.037 8.86 0.00 45.65 3.06
395 396 7.125391 AGGAATACAACACATAATTCCCACAT 58.875 34.615 8.86 0.00 45.65 3.21
396 397 6.489603 AGGAATACAACACATAATTCCCACA 58.510 36.000 8.86 0.00 45.65 4.17
397 398 6.601613 TGAGGAATACAACACATAATTCCCAC 59.398 38.462 8.86 5.46 45.65 4.61
398 399 6.726379 TGAGGAATACAACACATAATTCCCA 58.274 36.000 8.86 5.16 45.65 4.37
399 400 7.339466 ACTTGAGGAATACAACACATAATTCCC 59.661 37.037 8.86 3.06 45.65 3.97
400 401 8.184192 CACTTGAGGAATACAACACATAATTCC 58.816 37.037 5.05 5.05 45.11 3.01
401 402 7.698130 GCACTTGAGGAATACAACACATAATTC 59.302 37.037 0.00 0.00 0.00 2.17
402 403 7.176515 TGCACTTGAGGAATACAACACATAATT 59.823 33.333 0.00 0.00 0.00 1.40
403 404 6.658816 TGCACTTGAGGAATACAACACATAAT 59.341 34.615 0.00 0.00 0.00 1.28
404 405 6.000840 TGCACTTGAGGAATACAACACATAA 58.999 36.000 0.00 0.00 0.00 1.90
405 406 5.555966 TGCACTTGAGGAATACAACACATA 58.444 37.500 0.00 0.00 0.00 2.29
406 407 4.397420 TGCACTTGAGGAATACAACACAT 58.603 39.130 0.00 0.00 0.00 3.21
407 408 3.814625 TGCACTTGAGGAATACAACACA 58.185 40.909 0.00 0.00 0.00 3.72
408 409 4.829064 TTGCACTTGAGGAATACAACAC 57.171 40.909 0.00 0.00 0.00 3.32
409 410 4.260990 CGTTTGCACTTGAGGAATACAACA 60.261 41.667 0.00 0.00 0.00 3.33
410 411 4.219033 CGTTTGCACTTGAGGAATACAAC 58.781 43.478 0.00 0.00 0.00 3.32
411 412 3.304391 GCGTTTGCACTTGAGGAATACAA 60.304 43.478 0.00 0.00 42.15 2.41
412 413 2.225491 GCGTTTGCACTTGAGGAATACA 59.775 45.455 0.00 0.00 42.15 2.29
413 414 2.724839 CGCGTTTGCACTTGAGGAATAC 60.725 50.000 0.00 0.00 42.97 1.89
414 415 1.463056 CGCGTTTGCACTTGAGGAATA 59.537 47.619 0.00 0.00 42.97 1.75
415 416 0.238289 CGCGTTTGCACTTGAGGAAT 59.762 50.000 0.00 0.00 42.97 3.01
416 417 1.646540 CGCGTTTGCACTTGAGGAA 59.353 52.632 0.00 0.00 42.97 3.36
417 418 2.892334 GCGCGTTTGCACTTGAGGA 61.892 57.895 8.43 0.00 42.97 3.71
418 419 2.427410 GCGCGTTTGCACTTGAGG 60.427 61.111 8.43 0.00 42.97 3.86
419 420 2.153219 TACGCGCGTTTGCACTTGAG 62.153 55.000 42.10 4.36 42.97 3.02
420 421 1.561717 ATACGCGCGTTTGCACTTGA 61.562 50.000 42.10 20.37 42.97 3.02
421 422 0.093875 TATACGCGCGTTTGCACTTG 59.906 50.000 42.10 5.23 42.97 3.16
422 423 1.003851 ATATACGCGCGTTTGCACTT 58.996 45.000 42.10 16.26 42.97 3.16
423 424 1.842720 TATATACGCGCGTTTGCACT 58.157 45.000 42.10 20.88 42.97 4.40
424 425 2.154198 TCATATATACGCGCGTTTGCAC 59.846 45.455 42.10 0.00 42.97 4.57
425 426 2.395654 TCATATATACGCGCGTTTGCA 58.604 42.857 42.10 24.20 42.97 4.08
426 427 3.181534 ACATCATATATACGCGCGTTTGC 60.182 43.478 42.10 0.00 37.91 3.68
427 428 4.561959 ACATCATATATACGCGCGTTTG 57.438 40.909 42.10 27.05 0.00 2.93
428 429 5.155643 TGTACATCATATATACGCGCGTTT 58.844 37.500 42.10 34.25 0.00 3.60
429 430 4.725359 TGTACATCATATATACGCGCGTT 58.275 39.130 42.10 28.38 0.00 4.84
430 431 4.340263 CTGTACATCATATATACGCGCGT 58.660 43.478 39.05 39.05 0.00 6.01
431 432 3.724257 CCTGTACATCATATATACGCGCG 59.276 47.826 30.96 30.96 0.00 6.86
432 433 4.916870 TCCTGTACATCATATATACGCGC 58.083 43.478 5.73 0.00 0.00 6.86
433 434 6.120378 ACTCCTGTACATCATATATACGCG 57.880 41.667 3.53 3.53 0.00 6.01
434 435 7.640852 CCTACTCCTGTACATCATATATACGC 58.359 42.308 0.00 0.00 0.00 4.42
435 436 7.499563 AGCCTACTCCTGTACATCATATATACG 59.500 40.741 0.00 0.00 0.00 3.06
436 437 8.754991 AGCCTACTCCTGTACATCATATATAC 57.245 38.462 0.00 0.00 0.00 1.47
438 439 9.360901 CATAGCCTACTCCTGTACATCATATAT 57.639 37.037 0.00 0.00 0.00 0.86
439 440 8.557450 TCATAGCCTACTCCTGTACATCATATA 58.443 37.037 0.00 0.00 0.00 0.86
440 441 7.340743 GTCATAGCCTACTCCTGTACATCATAT 59.659 40.741 0.00 0.00 0.00 1.78
441 442 6.659668 GTCATAGCCTACTCCTGTACATCATA 59.340 42.308 0.00 0.00 0.00 2.15
442 443 5.478679 GTCATAGCCTACTCCTGTACATCAT 59.521 44.000 0.00 0.00 0.00 2.45
443 444 4.827835 GTCATAGCCTACTCCTGTACATCA 59.172 45.833 0.00 0.00 0.00 3.07
444 445 4.218852 GGTCATAGCCTACTCCTGTACATC 59.781 50.000 0.00 0.00 0.00 3.06
445 446 4.140900 AGGTCATAGCCTACTCCTGTACAT 60.141 45.833 0.00 0.00 37.04 2.29
446 447 3.204606 AGGTCATAGCCTACTCCTGTACA 59.795 47.826 0.00 0.00 37.04 2.90
447 448 3.834938 AGGTCATAGCCTACTCCTGTAC 58.165 50.000 0.00 0.00 37.04 2.90
448 449 4.537945 AAGGTCATAGCCTACTCCTGTA 57.462 45.455 0.00 0.00 38.03 2.74
449 450 3.406512 AAGGTCATAGCCTACTCCTGT 57.593 47.619 0.00 0.00 38.03 4.00
450 451 4.896482 AGTTAAGGTCATAGCCTACTCCTG 59.104 45.833 0.00 0.00 38.03 3.86
451 452 5.145513 AGTTAAGGTCATAGCCTACTCCT 57.854 43.478 0.00 0.00 38.03 3.69
452 453 7.668886 TGTATAGTTAAGGTCATAGCCTACTCC 59.331 40.741 0.00 0.00 38.03 3.85
453 454 8.632906 TGTATAGTTAAGGTCATAGCCTACTC 57.367 38.462 0.00 0.00 38.03 2.59
454 455 9.080097 CTTGTATAGTTAAGGTCATAGCCTACT 57.920 37.037 0.00 0.00 38.03 2.57
455 456 9.075678 TCTTGTATAGTTAAGGTCATAGCCTAC 57.924 37.037 0.00 0.00 38.03 3.18
456 457 9.075678 GTCTTGTATAGTTAAGGTCATAGCCTA 57.924 37.037 0.00 0.00 38.03 3.93
457 458 7.563924 TGTCTTGTATAGTTAAGGTCATAGCCT 59.436 37.037 0.00 0.00 41.41 4.58
458 459 7.723324 TGTCTTGTATAGTTAAGGTCATAGCC 58.277 38.462 0.00 0.00 0.00 3.93
459 460 9.032420 GTTGTCTTGTATAGTTAAGGTCATAGC 57.968 37.037 0.00 0.00 0.00 2.97
463 464 8.746530 CCTAGTTGTCTTGTATAGTTAAGGTCA 58.253 37.037 0.00 0.00 0.00 4.02
464 465 8.964772 TCCTAGTTGTCTTGTATAGTTAAGGTC 58.035 37.037 0.00 0.00 0.00 3.85
465 466 8.890410 TCCTAGTTGTCTTGTATAGTTAAGGT 57.110 34.615 0.00 0.00 0.00 3.50
466 467 8.414778 CCTCCTAGTTGTCTTGTATAGTTAAGG 58.585 40.741 0.00 0.00 0.00 2.69
467 468 8.968969 ACCTCCTAGTTGTCTTGTATAGTTAAG 58.031 37.037 0.00 0.00 0.00 1.85
468 469 8.746530 CACCTCCTAGTTGTCTTGTATAGTTAA 58.253 37.037 0.00 0.00 0.00 2.01
469 470 8.111545 TCACCTCCTAGTTGTCTTGTATAGTTA 58.888 37.037 0.00 0.00 0.00 2.24
470 471 6.952358 TCACCTCCTAGTTGTCTTGTATAGTT 59.048 38.462 0.00 0.00 0.00 2.24
471 472 6.491383 TCACCTCCTAGTTGTCTTGTATAGT 58.509 40.000 0.00 0.00 0.00 2.12
472 473 7.259161 GTTCACCTCCTAGTTGTCTTGTATAG 58.741 42.308 0.00 0.00 0.00 1.31
473 474 6.154021 GGTTCACCTCCTAGTTGTCTTGTATA 59.846 42.308 0.00 0.00 0.00 1.47
474 475 5.046520 GGTTCACCTCCTAGTTGTCTTGTAT 60.047 44.000 0.00 0.00 0.00 2.29
475 476 4.282703 GGTTCACCTCCTAGTTGTCTTGTA 59.717 45.833 0.00 0.00 0.00 2.41
476 477 3.071167 GGTTCACCTCCTAGTTGTCTTGT 59.929 47.826 0.00 0.00 0.00 3.16
477 478 3.557264 GGGTTCACCTCCTAGTTGTCTTG 60.557 52.174 0.00 0.00 35.85 3.02
478 479 2.638363 GGGTTCACCTCCTAGTTGTCTT 59.362 50.000 0.00 0.00 35.85 3.01
479 480 2.258109 GGGTTCACCTCCTAGTTGTCT 58.742 52.381 0.00 0.00 35.85 3.41
480 481 1.975680 TGGGTTCACCTCCTAGTTGTC 59.024 52.381 0.00 0.00 41.11 3.18
481 482 2.112279 TGGGTTCACCTCCTAGTTGT 57.888 50.000 0.00 0.00 41.11 3.32
482 483 3.721087 ATTGGGTTCACCTCCTAGTTG 57.279 47.619 0.00 0.00 41.11 3.16
483 484 4.172807 TGTATTGGGTTCACCTCCTAGTT 58.827 43.478 0.00 0.00 41.11 2.24
484 485 3.798515 TGTATTGGGTTCACCTCCTAGT 58.201 45.455 0.00 0.00 41.11 2.57
485 486 6.494666 TTATGTATTGGGTTCACCTCCTAG 57.505 41.667 0.00 0.00 41.11 3.02
486 487 6.894735 TTTATGTATTGGGTTCACCTCCTA 57.105 37.500 0.00 0.00 41.11 2.94
487 488 5.789574 TTTATGTATTGGGTTCACCTCCT 57.210 39.130 0.00 0.00 41.11 3.69
488 489 7.309194 GCATATTTATGTATTGGGTTCACCTCC 60.309 40.741 0.00 0.00 36.74 4.30
489 490 7.230510 TGCATATTTATGTATTGGGTTCACCTC 59.769 37.037 0.00 0.00 36.74 3.85
490 491 7.014230 GTGCATATTTATGTATTGGGTTCACCT 59.986 37.037 0.00 0.00 36.74 4.00
491 492 7.145323 GTGCATATTTATGTATTGGGTTCACC 58.855 38.462 0.00 0.00 36.11 4.02
492 493 7.711846 TGTGCATATTTATGTATTGGGTTCAC 58.288 34.615 0.00 0.00 36.11 3.18
493 494 7.888250 TGTGCATATTTATGTATTGGGTTCA 57.112 32.000 0.00 0.00 36.11 3.18
494 495 8.194104 TGTTGTGCATATTTATGTATTGGGTTC 58.806 33.333 0.00 0.00 36.11 3.62
495 496 7.978975 GTGTTGTGCATATTTATGTATTGGGTT 59.021 33.333 0.00 0.00 36.11 4.11
496 497 7.123397 TGTGTTGTGCATATTTATGTATTGGGT 59.877 33.333 0.00 0.00 36.11 4.51
497 498 7.487484 TGTGTTGTGCATATTTATGTATTGGG 58.513 34.615 0.00 0.00 36.11 4.12
533 534 9.267071 ACCATTTGGCTACTTTAAATCCTATTT 57.733 29.630 0.00 0.00 39.32 1.40
534 535 8.838649 ACCATTTGGCTACTTTAAATCCTATT 57.161 30.769 0.00 0.00 39.32 1.73
535 536 8.695456 CAACCATTTGGCTACTTTAAATCCTAT 58.305 33.333 0.00 0.00 39.32 2.57
536 537 7.891183 TCAACCATTTGGCTACTTTAAATCCTA 59.109 33.333 0.00 0.00 39.32 2.94
537 538 6.723977 TCAACCATTTGGCTACTTTAAATCCT 59.276 34.615 0.00 0.00 39.32 3.24
538 539 6.930731 TCAACCATTTGGCTACTTTAAATCC 58.069 36.000 0.00 0.00 39.32 3.01
539 540 7.826690 TCTCAACCATTTGGCTACTTTAAATC 58.173 34.615 0.00 0.00 39.32 2.17
540 541 7.775053 TCTCAACCATTTGGCTACTTTAAAT 57.225 32.000 0.00 0.00 39.32 1.40
541 542 7.589958 TTCTCAACCATTTGGCTACTTTAAA 57.410 32.000 0.00 0.00 39.32 1.52
542 543 7.504238 TCTTTCTCAACCATTTGGCTACTTTAA 59.496 33.333 0.00 0.00 39.32 1.52
543 544 7.001674 TCTTTCTCAACCATTTGGCTACTTTA 58.998 34.615 0.00 0.00 39.32 1.85
544 545 5.833131 TCTTTCTCAACCATTTGGCTACTTT 59.167 36.000 0.00 0.00 39.32 2.66
545 546 5.385198 TCTTTCTCAACCATTTGGCTACTT 58.615 37.500 0.00 0.00 39.32 2.24
546 547 4.985538 TCTTTCTCAACCATTTGGCTACT 58.014 39.130 0.00 0.00 39.32 2.57
547 548 5.009610 TGTTCTTTCTCAACCATTTGGCTAC 59.990 40.000 0.00 0.00 39.32 3.58
548 549 5.136828 TGTTCTTTCTCAACCATTTGGCTA 58.863 37.500 0.00 0.00 39.32 3.93
549 550 3.960102 TGTTCTTTCTCAACCATTTGGCT 59.040 39.130 0.00 0.00 39.32 4.75
550 551 4.320608 TGTTCTTTCTCAACCATTTGGC 57.679 40.909 0.00 0.00 39.32 4.52
551 552 9.492973 AATAAATGTTCTTTCTCAACCATTTGG 57.507 29.630 0.00 0.00 42.17 3.28
554 555 9.696917 GACAATAAATGTTCTTTCTCAACCATT 57.303 29.630 0.00 0.00 44.12 3.16
555 556 8.859090 TGACAATAAATGTTCTTTCTCAACCAT 58.141 29.630 0.00 0.00 44.12 3.55
556 557 8.231692 TGACAATAAATGTTCTTTCTCAACCA 57.768 30.769 0.00 0.00 44.12 3.67
557 558 9.696917 ATTGACAATAAATGTTCTTTCTCAACC 57.303 29.630 0.00 0.00 44.12 3.77
630 631 8.896722 AGTTGGAGGTTAGAGTTAGATTCTAA 57.103 34.615 1.90 1.90 35.39 2.10
631 632 8.114102 TGAGTTGGAGGTTAGAGTTAGATTCTA 58.886 37.037 0.00 0.00 0.00 2.10
632 633 6.954684 TGAGTTGGAGGTTAGAGTTAGATTCT 59.045 38.462 0.00 0.00 0.00 2.40
633 634 7.171630 TGAGTTGGAGGTTAGAGTTAGATTC 57.828 40.000 0.00 0.00 0.00 2.52
634 635 7.741554 ATGAGTTGGAGGTTAGAGTTAGATT 57.258 36.000 0.00 0.00 0.00 2.40
635 636 9.084533 GATATGAGTTGGAGGTTAGAGTTAGAT 57.915 37.037 0.00 0.00 0.00 1.98
636 637 7.506261 GGATATGAGTTGGAGGTTAGAGTTAGA 59.494 40.741 0.00 0.00 0.00 2.10
637 638 7.287927 TGGATATGAGTTGGAGGTTAGAGTTAG 59.712 40.741 0.00 0.00 0.00 2.34
638 639 7.130099 TGGATATGAGTTGGAGGTTAGAGTTA 58.870 38.462 0.00 0.00 0.00 2.24
639 640 5.964477 TGGATATGAGTTGGAGGTTAGAGTT 59.036 40.000 0.00 0.00 0.00 3.01
640 641 5.529289 TGGATATGAGTTGGAGGTTAGAGT 58.471 41.667 0.00 0.00 0.00 3.24
641 642 6.485830 TTGGATATGAGTTGGAGGTTAGAG 57.514 41.667 0.00 0.00 0.00 2.43
642 643 6.214615 TGTTTGGATATGAGTTGGAGGTTAGA 59.785 38.462 0.00 0.00 0.00 2.10
643 644 6.414732 TGTTTGGATATGAGTTGGAGGTTAG 58.585 40.000 0.00 0.00 0.00 2.34
644 645 6.381498 TGTTTGGATATGAGTTGGAGGTTA 57.619 37.500 0.00 0.00 0.00 2.85
645 646 5.255397 TGTTTGGATATGAGTTGGAGGTT 57.745 39.130 0.00 0.00 0.00 3.50
646 647 4.324563 CCTGTTTGGATATGAGTTGGAGGT 60.325 45.833 0.00 0.00 38.35 3.85
647 648 4.080356 TCCTGTTTGGATATGAGTTGGAGG 60.080 45.833 0.00 0.00 40.56 4.30
648 649 5.102953 TCCTGTTTGGATATGAGTTGGAG 57.897 43.478 0.00 0.00 40.56 3.86
660 661 3.433343 TCATACTACGGTCCTGTTTGGA 58.567 45.455 0.00 0.00 43.86 3.53
661 662 3.194968 ACTCATACTACGGTCCTGTTTGG 59.805 47.826 0.00 0.00 37.10 3.28
662 663 4.451629 ACTCATACTACGGTCCTGTTTG 57.548 45.455 0.00 0.00 0.00 2.93
663 664 5.012239 TGTACTCATACTACGGTCCTGTTT 58.988 41.667 0.00 0.00 32.00 2.83
664 665 4.592942 TGTACTCATACTACGGTCCTGTT 58.407 43.478 0.00 0.00 32.00 3.16
665 666 4.226427 TGTACTCATACTACGGTCCTGT 57.774 45.455 0.00 0.00 32.00 4.00
666 667 4.639310 ACTTGTACTCATACTACGGTCCTG 59.361 45.833 0.00 0.00 32.00 3.86
667 668 4.639310 CACTTGTACTCATACTACGGTCCT 59.361 45.833 0.00 0.00 32.00 3.85
668 669 4.201990 CCACTTGTACTCATACTACGGTCC 60.202 50.000 0.00 0.00 32.00 4.46
669 670 4.637534 TCCACTTGTACTCATACTACGGTC 59.362 45.833 0.00 0.00 32.00 4.79
670 671 4.592942 TCCACTTGTACTCATACTACGGT 58.407 43.478 0.00 0.00 32.00 4.83
671 672 4.639310 ACTCCACTTGTACTCATACTACGG 59.361 45.833 0.00 0.00 32.00 4.02
672 673 5.814764 ACTCCACTTGTACTCATACTACG 57.185 43.478 0.00 0.00 32.00 3.51
673 674 6.405619 GGGAACTCCACTTGTACTCATACTAC 60.406 46.154 0.00 0.00 37.91 2.73
674 675 5.655532 GGGAACTCCACTTGTACTCATACTA 59.344 44.000 0.00 0.00 37.91 1.82
675 676 4.466726 GGGAACTCCACTTGTACTCATACT 59.533 45.833 0.00 0.00 37.91 2.12
676 677 4.677250 CGGGAACTCCACTTGTACTCATAC 60.677 50.000 0.00 0.00 37.91 2.39
677 678 3.446161 CGGGAACTCCACTTGTACTCATA 59.554 47.826 0.00 0.00 37.91 2.15
678 679 2.233922 CGGGAACTCCACTTGTACTCAT 59.766 50.000 0.00 0.00 37.91 2.90
679 680 1.616865 CGGGAACTCCACTTGTACTCA 59.383 52.381 0.00 0.00 37.91 3.41
680 681 1.617357 ACGGGAACTCCACTTGTACTC 59.383 52.381 0.00 0.00 37.91 2.59
681 682 1.343465 CACGGGAACTCCACTTGTACT 59.657 52.381 0.00 0.00 37.91 2.73
682 683 1.607251 CCACGGGAACTCCACTTGTAC 60.607 57.143 0.00 0.00 37.91 2.90
683 684 0.682852 CCACGGGAACTCCACTTGTA 59.317 55.000 0.00 0.00 37.91 2.41
684 685 1.342672 ACCACGGGAACTCCACTTGT 61.343 55.000 0.00 0.00 37.91 3.16
685 686 0.179029 AACCACGGGAACTCCACTTG 60.179 55.000 0.00 0.00 37.91 3.16
686 687 0.179029 CAACCACGGGAACTCCACTT 60.179 55.000 0.00 0.00 37.91 3.16
687 688 1.450211 CAACCACGGGAACTCCACT 59.550 57.895 0.00 0.00 37.91 4.00
688 689 1.599797 CCAACCACGGGAACTCCAC 60.600 63.158 0.00 0.00 37.91 4.02
689 690 2.833227 CCAACCACGGGAACTCCA 59.167 61.111 0.00 0.00 37.91 3.86
690 691 2.671963 GCCAACCACGGGAACTCC 60.672 66.667 0.00 0.00 0.00 3.85
691 692 1.515521 CTTGCCAACCACGGGAACTC 61.516 60.000 0.00 0.00 32.32 3.01
692 693 1.528309 CTTGCCAACCACGGGAACT 60.528 57.895 0.00 0.00 32.32 3.01
693 694 3.039134 CTTGCCAACCACGGGAAC 58.961 61.111 0.00 0.00 32.32 3.62
694 695 2.909965 GCTTGCCAACCACGGGAA 60.910 61.111 0.00 0.00 34.84 3.97
695 696 3.723097 TTGCTTGCCAACCACGGGA 62.723 57.895 0.00 0.00 0.00 5.14
696 697 3.222855 TTGCTTGCCAACCACGGG 61.223 61.111 0.00 0.00 0.00 5.28
697 698 2.027460 GTTGCTTGCCAACCACGG 59.973 61.111 0.00 0.00 46.44 4.94
703 704 1.323271 TTTGTCCCGTTGCTTGCCAA 61.323 50.000 0.00 0.00 0.00 4.52
704 705 1.323271 TTTTGTCCCGTTGCTTGCCA 61.323 50.000 0.00 0.00 0.00 4.92
761 763 4.338400 ACTTGGGCTTTTAAACTCACACTC 59.662 41.667 0.00 0.00 0.00 3.51
767 769 5.874895 ATACGACTTGGGCTTTTAAACTC 57.125 39.130 0.00 0.00 0.00 3.01
771 773 7.507733 TTGTTTATACGACTTGGGCTTTTAA 57.492 32.000 0.00 0.00 0.00 1.52
833 842 0.875059 CAGCTTCGTTGGAGGTTTCC 59.125 55.000 0.00 0.00 44.31 3.13
876 911 3.532641 AAGGCCAGAATCAAAGAGGTT 57.467 42.857 5.01 0.00 0.00 3.50
877 912 4.870021 ATAAGGCCAGAATCAAAGAGGT 57.130 40.909 5.01 0.00 0.00 3.85
878 913 9.606631 GTATATATAAGGCCAGAATCAAAGAGG 57.393 37.037 5.01 0.00 0.00 3.69
879 914 9.307121 CGTATATATAAGGCCAGAATCAAAGAG 57.693 37.037 5.01 0.00 0.00 2.85
891 926 6.787085 GATGCAATCCGTATATATAAGGCC 57.213 41.667 17.25 0.00 37.38 5.19
913 948 3.952508 TGCCCTTCGCTGCAAGGA 61.953 61.111 23.55 9.17 45.41 3.36
948 983 2.743928 GTGGAGGTGGAGCTTGCG 60.744 66.667 0.00 0.00 0.00 4.85
971 1012 1.595109 CTGCTGCGTCTGGTTGTGA 60.595 57.895 0.00 0.00 0.00 3.58
1023 1071 3.561213 CTGCTCGCCATCTGCACG 61.561 66.667 0.00 0.00 41.33 5.34
1254 1302 1.443194 CGGGTAGTGTTCGACCACG 60.443 63.158 7.50 0.00 40.37 4.94
1461 5287 2.857592 ACCTTAGTACATACACGCGG 57.142 50.000 12.47 1.27 0.00 6.46
1471 5297 6.697892 CACTATTGCTAGCTGAACCTTAGTAC 59.302 42.308 17.23 0.00 0.00 2.73
1477 5303 3.429547 CGACACTATTGCTAGCTGAACCT 60.430 47.826 17.23 0.00 0.00 3.50
1478 5304 2.860735 CGACACTATTGCTAGCTGAACC 59.139 50.000 17.23 0.50 0.00 3.62
1490 5323 9.924650 AGTAACTAACTGAAATTCGACACTATT 57.075 29.630 0.00 0.00 36.93 1.73
1525 5360 6.119144 TCTAAGCAAACACAAGAACTGAAC 57.881 37.500 0.00 0.00 0.00 3.18
1531 5366 7.336931 GGAATAGGATCTAAGCAAACACAAGAA 59.663 37.037 0.00 0.00 0.00 2.52
1582 5417 3.144506 CTCTGCTCTTTGAGGCTTTGAA 58.855 45.455 0.00 0.00 0.00 2.69
1597 5432 4.061596 GTCTGCTTGTTAGAAACTCTGCT 58.938 43.478 0.00 0.00 0.00 4.24
1635 5470 1.004610 CATCGACTAGTGGCGCATTTG 60.005 52.381 10.83 0.00 0.00 2.32
1680 5515 4.273480 CGATCACTTCTTGAGTTGTTGGTT 59.727 41.667 0.00 0.00 37.77 3.67
1764 5599 0.458370 GCATCCATGTGGCCGTTTTC 60.458 55.000 0.00 0.00 34.44 2.29
1826 5661 4.202430 CCACTTTACAAGTAGACCCCTGTT 60.202 45.833 0.00 0.00 40.46 3.16
1838 5673 4.400529 AAAAACCAGGCCACTTTACAAG 57.599 40.909 5.01 0.00 0.00 3.16
1861 5696 6.811253 AACGACTTTAGCATGGTTTATGAA 57.189 33.333 1.12 0.00 39.21 2.57
1878 5713 5.425630 AGTACTTTTTCACTCCAAACGACT 58.574 37.500 0.00 0.00 0.00 4.18
1922 5774 6.006275 AGACATTGCATATTCCTAACAGGT 57.994 37.500 0.00 0.00 36.53 4.00
1957 6117 1.067213 GTGCAAACCTGGTGTTGTTGT 60.067 47.619 17.18 0.00 37.23 3.32
1980 6140 0.465097 ATCCTCTGGGCTGCATTTCG 60.465 55.000 0.50 0.00 0.00 3.46
1983 6143 1.811778 TAGATCCTCTGGGCTGCATT 58.188 50.000 0.50 0.00 0.00 3.56
1995 6155 9.976776 TCCTGATTCTACGTATAAATAGATCCT 57.023 33.333 0.00 0.00 0.00 3.24
2007 6169 5.873146 TCTCTCTCTCCTGATTCTACGTA 57.127 43.478 0.00 0.00 0.00 3.57
2034 6196 0.397941 GATCGGATGGGAATGCCTGA 59.602 55.000 0.00 0.00 0.00 3.86
2076 6238 6.662616 CAACAGTCAAGTGAAACATAAGGAG 58.337 40.000 0.00 0.00 41.43 3.69
2089 6251 2.902705 TCGTAAGGCAACAGTCAAGT 57.097 45.000 0.00 0.00 41.41 3.16
2221 6383 8.196802 TGAAGTGATTTATGTTCCAATAGACG 57.803 34.615 0.00 0.00 0.00 4.18
2290 6464 5.105797 TGACCAATACACCATGAAGCAATTC 60.106 40.000 0.00 0.00 0.00 2.17
2294 6468 3.346315 CTGACCAATACACCATGAAGCA 58.654 45.455 0.00 0.00 0.00 3.91
2338 6548 4.365514 TCTAAGGATTTGAACACAGGCA 57.634 40.909 0.00 0.00 0.00 4.75
2378 6590 7.122138 TGGAACAACAACGGGTATGTATATA 57.878 36.000 0.00 0.00 31.92 0.86
2380 6592 5.046448 ACTGGAACAACAACGGGTATGTATA 60.046 40.000 0.00 0.00 38.70 1.47
2381 6593 4.258543 CTGGAACAACAACGGGTATGTAT 58.741 43.478 0.00 0.00 38.70 2.29
2384 6596 2.225491 CACTGGAACAACAACGGGTATG 59.775 50.000 0.00 0.00 38.70 2.39
2385 6597 2.500229 CACTGGAACAACAACGGGTAT 58.500 47.619 0.00 0.00 38.70 2.73
2386 6598 1.475392 CCACTGGAACAACAACGGGTA 60.475 52.381 0.00 0.00 38.70 3.69
2387 6599 0.750182 CCACTGGAACAACAACGGGT 60.750 55.000 0.00 0.00 38.70 5.28
2388 6600 0.750182 ACCACTGGAACAACAACGGG 60.750 55.000 0.71 0.00 38.70 5.28
2389 6601 1.099689 AACCACTGGAACAACAACGG 58.900 50.000 0.71 0.00 38.70 4.44
2390 6602 1.797348 GCAACCACTGGAACAACAACG 60.797 52.381 0.71 0.00 38.70 4.10
2391 6603 1.476488 AGCAACCACTGGAACAACAAC 59.524 47.619 0.71 0.00 38.70 3.32
2392 6604 1.476085 CAGCAACCACTGGAACAACAA 59.524 47.619 0.71 0.00 38.70 2.83
2393 6605 1.102154 CAGCAACCACTGGAACAACA 58.898 50.000 0.71 0.00 38.70 3.33
2394 6606 1.334869 CTCAGCAACCACTGGAACAAC 59.665 52.381 0.71 0.00 38.70 3.32
2395 6607 1.679139 CTCAGCAACCACTGGAACAA 58.321 50.000 0.71 0.00 38.70 2.83
2396 6608 0.179020 CCTCAGCAACCACTGGAACA 60.179 55.000 0.71 0.00 38.26 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.