Multiple sequence alignment - TraesCS1A01G056100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G056100 chr1A 100.000 3797 0 0 1 3797 36764635 36760839 0.000000e+00 7012
1 TraesCS1A01G056100 chr1B 91.185 2337 136 33 1360 3678 57380759 57378475 0.000000e+00 3110
2 TraesCS1A01G056100 chr1B 90.380 842 60 12 527 1365 57381611 57380788 0.000000e+00 1086
3 TraesCS1A01G056100 chr1B 86.898 374 38 10 117 488 57381973 57381609 3.530000e-110 409
4 TraesCS1A01G056100 chr1D 93.355 1851 93 11 1355 3198 37460151 37458324 0.000000e+00 2710
5 TraesCS1A01G056100 chr1D 90.476 819 49 11 527 1328 37461010 37460204 0.000000e+00 1053
6 TraesCS1A01G056100 chr1D 95.710 303 11 2 3473 3774 37451866 37451565 1.590000e-133 486
7 TraesCS1A01G056100 chr1D 91.756 279 20 2 3195 3471 37458232 37457955 5.950000e-103 385
8 TraesCS1A01G056100 chr1D 86.986 146 12 5 349 488 37461152 37461008 1.410000e-34 158
9 TraesCS1A01G056100 chr7D 87.920 952 94 11 1358 2296 437424324 437425267 0.000000e+00 1101
10 TraesCS1A01G056100 chr7D 89.104 413 44 1 2368 2780 437425292 437425703 2.620000e-141 512
11 TraesCS1A01G056100 chr7A 87.209 946 98 13 1358 2296 487631427 487632356 0.000000e+00 1055
12 TraesCS1A01G056100 chr7A 88.620 413 44 1 2368 2780 487632381 487632790 2.040000e-137 499
13 TraesCS1A01G056100 chr7A 74.403 586 73 33 598 1144 487630547 487631094 3.010000e-41 180
14 TraesCS1A01G056100 chr7B 87.090 945 97 12 1358 2296 454239446 454240371 0.000000e+00 1046
15 TraesCS1A01G056100 chr7B 91.283 413 33 1 2368 2780 454240396 454240805 9.210000e-156 560
16 TraesCS1A01G056100 chr7B 79.474 190 24 5 863 1037 454238809 454238998 1.850000e-23 121
17 TraesCS1A01G056100 chr4B 87.779 671 54 18 3008 3672 196401401 196402049 0.000000e+00 760
18 TraesCS1A01G056100 chr2B 89.456 588 36 13 3008 3590 15261288 15261854 0.000000e+00 719


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G056100 chr1A 36760839 36764635 3796 True 7012.000000 7012 100.000000 1 3797 1 chr1A.!!$R1 3796
1 TraesCS1A01G056100 chr1B 57378475 57381973 3498 True 1535.000000 3110 89.487667 117 3678 3 chr1B.!!$R1 3561
2 TraesCS1A01G056100 chr1D 37457955 37461152 3197 True 1076.500000 2710 90.643250 349 3471 4 chr1D.!!$R2 3122
3 TraesCS1A01G056100 chr7D 437424324 437425703 1379 False 806.500000 1101 88.512000 1358 2780 2 chr7D.!!$F1 1422
4 TraesCS1A01G056100 chr7A 487630547 487632790 2243 False 578.000000 1055 83.410667 598 2780 3 chr7A.!!$F1 2182
5 TraesCS1A01G056100 chr7B 454238809 454240805 1996 False 575.666667 1046 85.949000 863 2780 3 chr7B.!!$F1 1917
6 TraesCS1A01G056100 chr4B 196401401 196402049 648 False 760.000000 760 87.779000 3008 3672 1 chr4B.!!$F1 664
7 TraesCS1A01G056100 chr2B 15261288 15261854 566 False 719.000000 719 89.456000 3008 3590 1 chr2B.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 0.029567 ATTTCCAAAACAACGCGCGA 59.970 45.0 39.36 9.75 0.00 5.87 F
216 217 0.042013 CCAAAACAACGCGCGAGTTA 60.042 50.0 39.36 0.00 32.35 2.24 F
488 498 0.108207 GGATCAGAGCCTCATGGGTG 59.892 60.0 0.00 0.00 45.24 4.61 F
518 528 0.184451 ATTGGCTGATAGCTGTGGGG 59.816 55.0 0.00 0.00 41.99 4.96 F
1978 2236 0.309302 TGAAAAATGGCGGACGTGTG 59.691 50.0 0.00 0.00 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 1878 0.094216 CTTCTCTGTTCACGCATGCG 59.906 55.000 36.79 36.79 46.03 4.73 R
1666 1919 0.597637 ATACTTTGGAGCGGCGATCG 60.598 55.000 19.61 11.69 42.76 3.69 R
2323 2602 1.069296 CATTTCGCGGAAACTGAAGCA 60.069 47.619 2.72 0.00 34.23 3.91 R
2324 2603 1.196808 TCATTTCGCGGAAACTGAAGC 59.803 47.619 2.72 0.00 34.23 3.86 R
3323 3707 0.037303 AGGATGTTGTCAGGCACCAG 59.963 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.272283 ACATGCATGAGAATTTCCATTCC 57.728 39.130 32.75 0.00 39.95 3.01
25 26 4.712829 ACATGCATGAGAATTTCCATTCCA 59.287 37.500 32.75 0.00 39.95 3.53
26 27 4.724074 TGCATGAGAATTTCCATTCCAC 57.276 40.909 0.00 0.00 39.95 4.02
27 28 4.346730 TGCATGAGAATTTCCATTCCACT 58.653 39.130 0.00 0.00 39.95 4.00
28 29 5.508567 TGCATGAGAATTTCCATTCCACTA 58.491 37.500 0.00 0.00 39.95 2.74
29 30 6.131264 TGCATGAGAATTTCCATTCCACTAT 58.869 36.000 0.00 0.00 39.95 2.12
30 31 6.040054 TGCATGAGAATTTCCATTCCACTATG 59.960 38.462 0.00 0.00 39.95 2.23
31 32 6.444633 CATGAGAATTTCCATTCCACTATGC 58.555 40.000 0.00 0.00 39.95 3.14
32 33 5.759059 TGAGAATTTCCATTCCACTATGCT 58.241 37.500 0.00 0.00 39.95 3.79
33 34 6.899089 TGAGAATTTCCATTCCACTATGCTA 58.101 36.000 0.00 0.00 39.95 3.49
34 35 7.520798 TGAGAATTTCCATTCCACTATGCTAT 58.479 34.615 0.00 0.00 39.95 2.97
35 36 8.000709 TGAGAATTTCCATTCCACTATGCTATT 58.999 33.333 0.00 0.00 39.95 1.73
36 37 8.773033 AGAATTTCCATTCCACTATGCTATTT 57.227 30.769 0.00 0.00 39.95 1.40
37 38 9.866655 AGAATTTCCATTCCACTATGCTATTTA 57.133 29.630 0.00 0.00 39.95 1.40
55 56 9.545105 TGCTATTTATATTTCAAAAATGGGCAG 57.455 29.630 0.00 0.00 32.83 4.85
56 57 8.992073 GCTATTTATATTTCAAAAATGGGCAGG 58.008 33.333 0.00 0.00 0.00 4.85
57 58 9.492973 CTATTTATATTTCAAAAATGGGCAGGG 57.507 33.333 0.00 0.00 0.00 4.45
58 59 7.502060 TTTATATTTCAAAAATGGGCAGGGA 57.498 32.000 0.00 0.00 0.00 4.20
59 60 7.502060 TTATATTTCAAAAATGGGCAGGGAA 57.498 32.000 0.00 0.00 0.00 3.97
60 61 4.720775 ATTTCAAAAATGGGCAGGGAAA 57.279 36.364 0.00 0.00 0.00 3.13
61 62 4.720775 TTTCAAAAATGGGCAGGGAAAT 57.279 36.364 0.00 0.00 0.00 2.17
62 63 5.832539 TTTCAAAAATGGGCAGGGAAATA 57.167 34.783 0.00 0.00 0.00 1.40
63 64 6.385766 TTTCAAAAATGGGCAGGGAAATAT 57.614 33.333 0.00 0.00 0.00 1.28
64 65 6.385766 TTCAAAAATGGGCAGGGAAATATT 57.614 33.333 0.00 0.00 0.00 1.28
65 66 6.385766 TCAAAAATGGGCAGGGAAATATTT 57.614 33.333 0.00 0.00 0.00 1.40
66 67 6.788218 TCAAAAATGGGCAGGGAAATATTTT 58.212 32.000 1.43 0.00 31.31 1.82
67 68 7.922382 TCAAAAATGGGCAGGGAAATATTTTA 58.078 30.769 1.43 0.00 30.27 1.52
68 69 7.826744 TCAAAAATGGGCAGGGAAATATTTTAC 59.173 33.333 1.43 0.00 30.27 2.01
69 70 6.882768 AAATGGGCAGGGAAATATTTTACA 57.117 33.333 1.43 0.00 0.00 2.41
70 71 6.882768 AATGGGCAGGGAAATATTTTACAA 57.117 33.333 1.43 0.00 0.00 2.41
71 72 5.669164 TGGGCAGGGAAATATTTTACAAC 57.331 39.130 1.43 0.00 0.00 3.32
72 73 5.337788 TGGGCAGGGAAATATTTTACAACT 58.662 37.500 1.43 0.00 0.00 3.16
73 74 5.186797 TGGGCAGGGAAATATTTTACAACTG 59.813 40.000 1.43 7.83 0.00 3.16
74 75 5.186992 GGGCAGGGAAATATTTTACAACTGT 59.813 40.000 1.43 0.00 0.00 3.55
75 76 6.378848 GGGCAGGGAAATATTTTACAACTGTA 59.621 38.462 1.43 0.00 0.00 2.74
76 77 7.255569 GGCAGGGAAATATTTTACAACTGTAC 58.744 38.462 1.43 0.00 0.00 2.90
77 78 7.094118 GGCAGGGAAATATTTTACAACTGTACA 60.094 37.037 1.43 0.00 0.00 2.90
78 79 8.301002 GCAGGGAAATATTTTACAACTGTACAA 58.699 33.333 1.43 0.00 0.00 2.41
86 87 7.996098 ATTTTACAACTGTACAATACCTGCT 57.004 32.000 0.00 0.00 31.37 4.24
88 89 8.905660 TTTTACAACTGTACAATACCTGCTAA 57.094 30.769 0.00 0.00 0.00 3.09
89 90 8.905660 TTTACAACTGTACAATACCTGCTAAA 57.094 30.769 0.00 0.00 0.00 1.85
90 91 6.796705 ACAACTGTACAATACCTGCTAAAC 57.203 37.500 0.00 0.00 0.00 2.01
91 92 6.292923 ACAACTGTACAATACCTGCTAAACA 58.707 36.000 0.00 0.00 0.00 2.83
92 93 6.204108 ACAACTGTACAATACCTGCTAAACAC 59.796 38.462 0.00 0.00 0.00 3.32
93 94 5.860611 ACTGTACAATACCTGCTAAACACA 58.139 37.500 0.00 0.00 0.00 3.72
94 95 6.292923 ACTGTACAATACCTGCTAAACACAA 58.707 36.000 0.00 0.00 0.00 3.33
95 96 6.940298 ACTGTACAATACCTGCTAAACACAAT 59.060 34.615 0.00 0.00 0.00 2.71
96 97 8.098286 ACTGTACAATACCTGCTAAACACAATA 58.902 33.333 0.00 0.00 0.00 1.90
97 98 8.850007 TGTACAATACCTGCTAAACACAATAA 57.150 30.769 0.00 0.00 0.00 1.40
98 99 9.286170 TGTACAATACCTGCTAAACACAATAAA 57.714 29.630 0.00 0.00 0.00 1.40
99 100 9.550811 GTACAATACCTGCTAAACACAATAAAC 57.449 33.333 0.00 0.00 0.00 2.01
100 101 7.599171 ACAATACCTGCTAAACACAATAAACC 58.401 34.615 0.00 0.00 0.00 3.27
101 102 7.231722 ACAATACCTGCTAAACACAATAAACCA 59.768 33.333 0.00 0.00 0.00 3.67
102 103 7.954666 ATACCTGCTAAACACAATAAACCAT 57.045 32.000 0.00 0.00 0.00 3.55
103 104 6.024552 ACCTGCTAAACACAATAAACCATG 57.975 37.500 0.00 0.00 0.00 3.66
104 105 4.864247 CCTGCTAAACACAATAAACCATGC 59.136 41.667 0.00 0.00 0.00 4.06
105 106 4.480541 TGCTAAACACAATAAACCATGCG 58.519 39.130 0.00 0.00 0.00 4.73
106 107 4.216472 TGCTAAACACAATAAACCATGCGA 59.784 37.500 0.00 0.00 0.00 5.10
107 108 5.157781 GCTAAACACAATAAACCATGCGAA 58.842 37.500 0.00 0.00 0.00 4.70
108 109 5.804979 GCTAAACACAATAAACCATGCGAAT 59.195 36.000 0.00 0.00 0.00 3.34
109 110 6.310224 GCTAAACACAATAAACCATGCGAATT 59.690 34.615 0.00 0.00 0.00 2.17
110 111 7.148656 GCTAAACACAATAAACCATGCGAATTT 60.149 33.333 0.00 0.00 0.00 1.82
111 112 7.489574 AAACACAATAAACCATGCGAATTTT 57.510 28.000 0.00 0.00 0.00 1.82
112 113 8.594881 AAACACAATAAACCATGCGAATTTTA 57.405 26.923 0.00 0.00 0.00 1.52
113 114 8.594881 AACACAATAAACCATGCGAATTTTAA 57.405 26.923 0.00 0.00 0.00 1.52
114 115 8.238481 ACACAATAAACCATGCGAATTTTAAG 57.762 30.769 0.00 0.00 0.00 1.85
115 116 7.870445 ACACAATAAACCATGCGAATTTTAAGT 59.130 29.630 0.00 0.00 0.00 2.24
123 124 7.527457 ACCATGCGAATTTTAAGTCTTAGTTC 58.473 34.615 0.00 0.00 0.00 3.01
125 126 7.905493 CCATGCGAATTTTAAGTCTTAGTTCTC 59.095 37.037 0.00 5.76 0.00 2.87
188 189 5.702865 CAAGTCCCATTGGAATATATTGCG 58.297 41.667 11.76 0.00 44.07 4.85
209 210 3.481690 GAACATTTCCAAAACAACGCG 57.518 42.857 3.53 3.53 0.00 6.01
210 211 1.204792 ACATTTCCAAAACAACGCGC 58.795 45.000 5.73 0.00 0.00 6.86
211 212 0.158511 CATTTCCAAAACAACGCGCG 59.841 50.000 30.96 30.96 0.00 6.86
212 213 0.029567 ATTTCCAAAACAACGCGCGA 59.970 45.000 39.36 9.75 0.00 5.87
214 215 1.707239 TTCCAAAACAACGCGCGAGT 61.707 50.000 39.36 29.68 0.00 4.18
215 216 1.298041 CCAAAACAACGCGCGAGTT 60.298 52.632 39.36 33.16 34.15 3.01
216 217 0.042013 CCAAAACAACGCGCGAGTTA 60.042 50.000 39.36 0.00 32.35 2.24
217 218 1.399215 CCAAAACAACGCGCGAGTTAT 60.399 47.619 39.36 23.51 32.35 1.89
218 219 1.896193 CAAAACAACGCGCGAGTTATC 59.104 47.619 39.36 0.00 32.35 1.75
219 220 1.141645 AAACAACGCGCGAGTTATCA 58.858 45.000 39.36 0.00 32.35 2.15
220 221 1.355971 AACAACGCGCGAGTTATCAT 58.644 45.000 39.36 15.41 32.35 2.45
221 222 0.921347 ACAACGCGCGAGTTATCATC 59.079 50.000 39.36 0.00 32.35 2.92
222 223 1.200483 CAACGCGCGAGTTATCATCT 58.800 50.000 39.36 6.60 32.35 2.90
223 224 2.223409 ACAACGCGCGAGTTATCATCTA 60.223 45.455 39.36 0.00 32.35 1.98
224 225 2.980476 CAACGCGCGAGTTATCATCTAT 59.020 45.455 39.36 5.70 32.35 1.98
225 226 2.852748 ACGCGCGAGTTATCATCTATC 58.147 47.619 39.36 0.00 0.00 2.08
226 227 2.484651 ACGCGCGAGTTATCATCTATCT 59.515 45.455 39.36 4.34 0.00 1.98
227 228 3.683340 ACGCGCGAGTTATCATCTATCTA 59.317 43.478 39.36 0.00 0.00 1.98
278 283 1.076549 GGTCCAGCATCCCAACCAA 59.923 57.895 0.00 0.00 0.00 3.67
280 285 0.603065 GTCCAGCATCCCAACCAAAC 59.397 55.000 0.00 0.00 0.00 2.93
294 299 2.201210 AAACCCCACCCTGCCTTG 59.799 61.111 0.00 0.00 0.00 3.61
304 309 1.251251 CCCTGCCTTGTCTCTTTTGG 58.749 55.000 0.00 0.00 0.00 3.28
333 338 1.271379 CATGCACAGTGTGAGCCAAAT 59.729 47.619 27.37 6.79 35.23 2.32
341 347 2.490903 AGTGTGAGCCAAATGCATCTTC 59.509 45.455 0.00 0.00 44.83 2.87
361 367 0.687354 ACTGACTGGCTAACCACCTG 59.313 55.000 0.00 0.00 42.67 4.00
398 404 1.115930 ATCAGTGGCTAGCCCTACCG 61.116 60.000 30.81 15.52 34.56 4.02
432 438 3.314331 CAGTGCCCGTCCTCCTGT 61.314 66.667 0.00 0.00 0.00 4.00
440 450 2.352032 CGTCCTCCTGTCACCCCTC 61.352 68.421 0.00 0.00 0.00 4.30
485 495 2.552591 GGAATGGATCAGAGCCTCATGG 60.553 54.545 6.21 0.00 0.00 3.66
486 496 1.065647 ATGGATCAGAGCCTCATGGG 58.934 55.000 6.21 0.00 38.36 4.00
488 498 0.108207 GGATCAGAGCCTCATGGGTG 59.892 60.000 0.00 0.00 45.24 4.61
489 499 1.126488 GATCAGAGCCTCATGGGTGA 58.874 55.000 0.00 0.00 45.24 4.02
490 500 1.698532 GATCAGAGCCTCATGGGTGAT 59.301 52.381 0.00 0.00 45.24 3.06
491 501 0.835276 TCAGAGCCTCATGGGTGATG 59.165 55.000 0.00 0.00 45.24 3.07
492 502 0.835276 CAGAGCCTCATGGGTGATGA 59.165 55.000 0.00 0.00 45.24 2.92
493 503 1.420514 CAGAGCCTCATGGGTGATGAT 59.579 52.381 0.00 0.00 45.24 2.45
494 504 1.420514 AGAGCCTCATGGGTGATGATG 59.579 52.381 0.00 0.00 45.24 3.07
495 505 2.338381 GCCTCATGGGTGATGATGC 58.662 57.895 0.00 0.00 42.99 3.91
496 506 0.466739 GCCTCATGGGTGATGATGCA 60.467 55.000 0.00 0.00 46.54 3.96
497 507 1.822062 GCCTCATGGGTGATGATGCAT 60.822 52.381 0.00 0.00 46.54 3.96
498 508 1.886542 CCTCATGGGTGATGATGCATG 59.113 52.381 2.46 0.00 40.46 4.06
499 509 2.488347 CCTCATGGGTGATGATGCATGA 60.488 50.000 2.46 0.00 40.46 3.07
500 510 3.421844 CTCATGGGTGATGATGCATGAT 58.578 45.455 2.46 0.00 40.46 2.45
501 511 3.826729 CTCATGGGTGATGATGCATGATT 59.173 43.478 2.46 0.00 40.46 2.57
502 512 3.572255 TCATGGGTGATGATGCATGATTG 59.428 43.478 2.46 0.00 36.06 2.67
503 513 2.312390 TGGGTGATGATGCATGATTGG 58.688 47.619 2.46 0.00 0.00 3.16
504 514 1.000506 GGGTGATGATGCATGATTGGC 59.999 52.381 2.46 0.00 0.00 4.52
505 515 1.961394 GGTGATGATGCATGATTGGCT 59.039 47.619 2.46 0.00 0.00 4.75
506 516 2.288213 GGTGATGATGCATGATTGGCTG 60.288 50.000 2.46 0.00 0.00 4.85
507 517 2.621526 GTGATGATGCATGATTGGCTGA 59.378 45.455 2.46 0.00 0.00 4.26
508 518 3.255888 GTGATGATGCATGATTGGCTGAT 59.744 43.478 2.46 0.00 0.00 2.90
509 519 4.457949 GTGATGATGCATGATTGGCTGATA 59.542 41.667 2.46 0.00 0.00 2.15
510 520 4.700213 TGATGATGCATGATTGGCTGATAG 59.300 41.667 2.46 0.00 0.00 2.08
511 521 2.817844 TGATGCATGATTGGCTGATAGC 59.182 45.455 2.46 0.00 41.46 2.97
512 522 2.651382 TGCATGATTGGCTGATAGCT 57.349 45.000 0.00 0.00 41.99 3.32
513 523 2.227194 TGCATGATTGGCTGATAGCTG 58.773 47.619 0.00 0.00 41.99 4.24
514 524 2.228059 GCATGATTGGCTGATAGCTGT 58.772 47.619 0.00 0.00 41.99 4.40
515 525 2.031069 GCATGATTGGCTGATAGCTGTG 60.031 50.000 0.00 0.00 41.99 3.66
516 526 2.336945 TGATTGGCTGATAGCTGTGG 57.663 50.000 0.00 0.00 41.99 4.17
517 527 1.134007 TGATTGGCTGATAGCTGTGGG 60.134 52.381 0.00 0.00 41.99 4.61
518 528 0.184451 ATTGGCTGATAGCTGTGGGG 59.816 55.000 0.00 0.00 41.99 4.96
519 529 1.207488 TTGGCTGATAGCTGTGGGGT 61.207 55.000 0.00 0.00 41.99 4.95
520 530 1.207488 TGGCTGATAGCTGTGGGGTT 61.207 55.000 0.00 0.00 41.99 4.11
521 531 0.837272 GGCTGATAGCTGTGGGGTTA 59.163 55.000 0.00 0.00 41.99 2.85
522 532 1.475213 GGCTGATAGCTGTGGGGTTAC 60.475 57.143 0.00 0.00 41.99 2.50
523 533 1.209504 GCTGATAGCTGTGGGGTTACA 59.790 52.381 0.00 0.00 38.45 2.41
543 553 5.135508 ACAGTGGTACATGTAGACTTGTC 57.864 43.478 5.62 0.00 44.52 3.18
580 590 2.945456 AGATGAGTACGCAGGACCATA 58.055 47.619 5.33 0.00 0.00 2.74
581 591 3.501349 AGATGAGTACGCAGGACCATAT 58.499 45.455 5.33 0.00 0.00 1.78
596 606 3.548770 ACCATATCTGCTGTCAATGTGG 58.451 45.455 5.44 5.44 0.00 4.17
713 723 3.312736 AAGGAAGCAAAAAGGGTCTCA 57.687 42.857 0.00 0.00 0.00 3.27
718 728 4.522789 GGAAGCAAAAAGGGTCTCATGTTA 59.477 41.667 0.00 0.00 0.00 2.41
784 802 2.360767 GCCATTGCCAGGCCATCAA 61.361 57.895 9.64 6.12 46.50 2.57
801 819 6.116126 GCCATCAACCATAAACTACTCTTCT 58.884 40.000 0.00 0.00 0.00 2.85
802 820 6.037610 GCCATCAACCATAAACTACTCTTCTG 59.962 42.308 0.00 0.00 0.00 3.02
853 884 2.430610 CGCCTCCTCCTCCTCCTTG 61.431 68.421 0.00 0.00 0.00 3.61
860 891 1.062121 CCTCCTCCTCCTTGACCCATA 60.062 57.143 0.00 0.00 0.00 2.74
861 892 2.629639 CCTCCTCCTCCTTGACCCATAA 60.630 54.545 0.00 0.00 0.00 1.90
875 906 2.131023 CCCATAAGGCCTTCTTCCTCT 58.869 52.381 24.49 0.00 36.93 3.69
944 986 7.280652 CACCAACATCGCCATATAATATCATCA 59.719 37.037 0.00 0.00 0.00 3.07
964 1006 3.197333 TCAAGCTTCCTGATCAGAGAAGG 59.803 47.826 32.51 23.82 36.80 3.46
989 1031 2.564947 GAGAGAGGCAAGGAAACAGAGA 59.435 50.000 0.00 0.00 0.00 3.10
1148 1229 4.286707 TCGATCTTCCCCTACAATCTCAA 58.713 43.478 0.00 0.00 0.00 3.02
1186 1351 5.771153 TTTTCACATCAGCAACAATCTCA 57.229 34.783 0.00 0.00 0.00 3.27
1233 1398 3.272334 CGGCCGCAGCTGTATTCC 61.272 66.667 14.67 10.53 40.79 3.01
1324 1489 1.226542 CCTCCTGCATGCTCCACAT 59.773 57.895 20.33 0.00 40.66 3.21
1416 1662 0.392998 AATACGCTGTGAAGGCCCTG 60.393 55.000 0.00 0.00 0.00 4.45
1444 1690 2.231529 CTGTAGATCACCTAGGGTCCG 58.768 57.143 14.81 0.00 31.02 4.79
1483 1729 1.468914 GCCTTGTCGATCAAAGGTTCC 59.531 52.381 19.61 5.92 35.48 3.62
1585 1834 2.158623 TCCTTGCAATATGCCTTCGGAT 60.159 45.455 0.00 0.00 44.23 4.18
1616 1869 2.421619 GGTTGGTTTCAGAGAGCTCAG 58.578 52.381 17.77 5.46 0.00 3.35
1625 1878 1.067250 GAGAGCTCAGGCGATCCAC 59.933 63.158 17.77 0.00 44.37 4.02
1665 1918 0.957395 CCTGACGCAGCAATCCTTGT 60.957 55.000 0.00 0.00 0.00 3.16
1666 1919 0.445436 CTGACGCAGCAATCCTTGTC 59.555 55.000 0.00 0.00 0.00 3.18
1739 1996 5.679638 GCCATAAGATACCTTTGTGCCTTTG 60.680 44.000 0.00 0.00 33.94 2.77
1778 2035 0.798776 CCTGTCGGCACATTCAAGAC 59.201 55.000 0.00 0.00 0.00 3.01
1832 2090 6.341316 GTGAGACATCTTGATGCCTTACTTA 58.659 40.000 12.19 1.26 0.00 2.24
1834 2092 6.155221 TGAGACATCTTGATGCCTTACTTACT 59.845 38.462 10.20 0.00 0.00 2.24
1835 2093 7.342026 TGAGACATCTTGATGCCTTACTTACTA 59.658 37.037 10.20 0.00 0.00 1.82
1879 2137 4.114997 GTTCCCAATGCCGTGCCG 62.115 66.667 0.00 0.00 0.00 5.69
1916 2174 3.902881 ATAAGGTCAAGAGCAGGACTG 57.097 47.619 1.84 0.00 34.49 3.51
1974 2232 0.808125 TCCATGAAAAATGGCGGACG 59.192 50.000 0.00 0.00 39.01 4.79
1978 2236 0.309302 TGAAAAATGGCGGACGTGTG 59.691 50.000 0.00 0.00 0.00 3.82
1991 2253 2.351726 GGACGTGTGTTGGATATCTTGC 59.648 50.000 0.00 0.00 0.00 4.01
2104 2369 6.265577 GTCAGTTTCAGTTTGCAAACTACAT 58.734 36.000 37.19 21.59 46.89 2.29
2323 2602 1.336887 GGTGGTATATGAGTGCGCGAT 60.337 52.381 12.10 0.00 0.00 4.58
2324 2603 1.721389 GTGGTATATGAGTGCGCGATG 59.279 52.381 12.10 0.00 0.00 3.84
2330 2609 1.426816 ATGAGTGCGCGATGCTTCAG 61.427 55.000 12.10 0.00 46.63 3.02
2331 2610 2.047844 AGTGCGCGATGCTTCAGT 60.048 55.556 12.10 0.00 46.63 3.41
2337 2616 1.226128 GCGATGCTTCAGTTTCCGC 60.226 57.895 0.08 0.00 0.00 5.54
2356 2638 4.802039 TCCGCGAAATGATTACAGAGTTAC 59.198 41.667 8.23 0.00 0.00 2.50
2357 2639 4.804139 CCGCGAAATGATTACAGAGTTACT 59.196 41.667 8.23 0.00 0.00 2.24
2360 2642 6.253727 CGCGAAATGATTACAGAGTTACTCTT 59.746 38.462 12.76 7.16 38.99 2.85
2425 2709 1.666888 CGTGGCCAATCTTGTTTCTGC 60.667 52.381 7.24 0.00 0.00 4.26
2542 2826 1.697982 AGTGTCAGGGTCCAGGTAAAC 59.302 52.381 0.00 0.00 0.00 2.01
2616 2901 5.514204 GCTGACACAATATTTCATGTTGCTC 59.486 40.000 0.00 0.00 35.11 4.26
2693 2978 6.005066 TGACAGGTACAATGATGATTCCAT 57.995 37.500 4.48 0.00 35.29 3.41
2719 3004 1.735369 GCGAGCAGACTCTGAAGAAGG 60.735 57.143 10.45 0.00 41.09 3.46
2813 3098 6.327386 TCCTTAGGCTGTAAAGGATGAAAT 57.673 37.500 12.26 0.00 44.96 2.17
2814 3099 6.731467 TCCTTAGGCTGTAAAGGATGAAATT 58.269 36.000 12.26 0.00 44.96 1.82
2870 3155 6.514063 ACTCTGTACTCAGTTAACTTTGTCC 58.486 40.000 5.07 0.00 41.91 4.02
2876 3161 5.855045 ACTCAGTTAACTTTGTCCGATTCT 58.145 37.500 5.07 0.00 0.00 2.40
2944 3229 1.685224 CTTAAGGTGAGCCCTGGCA 59.315 57.895 11.38 0.00 45.47 4.92
3154 3442 4.036262 TGTTATGTTCTGTGCAGTTTGTCC 59.964 41.667 0.00 0.00 0.00 4.02
3214 3597 7.841956 ACTAATACTTGATACTTGACTGCAGT 58.158 34.615 21.88 21.88 0.00 4.40
3323 3707 3.067742 CCAATTCATGATGAACTGGCTCC 59.932 47.826 20.87 0.00 45.12 4.70
3329 3713 1.001641 ATGAACTGGCTCCTGGTGC 60.002 57.895 12.18 12.18 0.00 5.01
3436 3822 4.058124 GACTGAAATTTGGAAAACCTGGC 58.942 43.478 0.00 0.00 0.00 4.85
3444 3830 5.941555 TTTGGAAAACCTGGCTTTTTCTA 57.058 34.783 17.12 11.47 41.04 2.10
3454 3840 2.825532 TGGCTTTTTCTATGTTCTGGCC 59.174 45.455 0.00 0.00 37.77 5.36
3474 3862 9.384849 TCTGGCCAATGCTATATGTCTATATAT 57.615 33.333 7.01 0.00 37.74 0.86
3536 3924 3.853330 CCTCGATGCCGTTGCGTG 61.853 66.667 0.00 0.00 41.78 5.34
3537 3925 3.853330 CTCGATGCCGTTGCGTGG 61.853 66.667 0.00 0.00 41.78 4.94
3538 3926 4.365505 TCGATGCCGTTGCGTGGA 62.366 61.111 0.00 0.00 41.78 4.02
3539 3927 4.147322 CGATGCCGTTGCGTGGAC 62.147 66.667 0.00 0.00 41.78 4.02
3540 3928 2.742372 GATGCCGTTGCGTGGACT 60.742 61.111 0.00 0.00 41.78 3.85
3541 3929 1.447140 GATGCCGTTGCGTGGACTA 60.447 57.895 0.00 0.00 41.78 2.59
3542 3930 0.810031 GATGCCGTTGCGTGGACTAT 60.810 55.000 0.00 0.00 41.78 2.12
3543 3931 1.089481 ATGCCGTTGCGTGGACTATG 61.089 55.000 0.00 0.00 41.78 2.23
3552 3941 1.693627 CGTGGACTATGGCCTACTCT 58.306 55.000 3.32 0.00 0.00 3.24
3555 3944 1.062886 TGGACTATGGCCTACTCTGCT 60.063 52.381 3.32 0.00 0.00 4.24
3573 3962 2.637382 TGCTTTTTGATTTTCCCTCCCC 59.363 45.455 0.00 0.00 0.00 4.81
3575 3964 3.306989 GCTTTTTGATTTTCCCTCCCCTG 60.307 47.826 0.00 0.00 0.00 4.45
3577 3966 0.783206 TTGATTTTCCCTCCCCTGCA 59.217 50.000 0.00 0.00 0.00 4.41
3603 3993 6.408206 GCTAGGTATTATCTTGTGTTCCTGGT 60.408 42.308 0.00 0.00 0.00 4.00
3619 4009 7.434013 GTGTTCCTGGTTTTTGTTTATACAGTG 59.566 37.037 0.00 0.00 35.28 3.66
3620 4010 6.642707 TCCTGGTTTTTGTTTATACAGTGG 57.357 37.500 0.00 0.00 35.28 4.00
3643 4033 2.593725 CCCATCCATGGCTCGCTG 60.594 66.667 6.96 0.00 46.70 5.18
3655 4045 5.048504 CCATGGCTCGCTGAATTTAATGTAT 60.049 40.000 0.00 0.00 0.00 2.29
3675 4065 2.832661 GCGCCACCCATTGCCATA 60.833 61.111 0.00 0.00 0.00 2.74
3678 4068 1.727511 CGCCACCCATTGCCATACTG 61.728 60.000 0.00 0.00 0.00 2.74
3679 4069 0.395586 GCCACCCATTGCCATACTGA 60.396 55.000 0.00 0.00 0.00 3.41
3680 4070 1.959508 GCCACCCATTGCCATACTGAA 60.960 52.381 0.00 0.00 0.00 3.02
3681 4071 2.669781 CCACCCATTGCCATACTGAAT 58.330 47.619 0.00 0.00 0.00 2.57
3682 4072 3.831323 CCACCCATTGCCATACTGAATA 58.169 45.455 0.00 0.00 0.00 1.75
3683 4073 4.410099 CCACCCATTGCCATACTGAATAT 58.590 43.478 0.00 0.00 0.00 1.28
3684 4074 5.569355 CCACCCATTGCCATACTGAATATA 58.431 41.667 0.00 0.00 0.00 0.86
3685 4075 6.189859 CCACCCATTGCCATACTGAATATAT 58.810 40.000 0.00 0.00 0.00 0.86
3686 4076 6.319658 CCACCCATTGCCATACTGAATATATC 59.680 42.308 0.00 0.00 0.00 1.63
3687 4077 6.885918 CACCCATTGCCATACTGAATATATCA 59.114 38.462 0.00 0.00 36.38 2.15
3688 4078 7.394077 CACCCATTGCCATACTGAATATATCAA 59.606 37.037 0.00 0.00 37.67 2.57
3689 4079 8.117956 ACCCATTGCCATACTGAATATATCAAT 58.882 33.333 0.00 0.00 37.67 2.57
3690 4080 8.627403 CCCATTGCCATACTGAATATATCAATC 58.373 37.037 0.00 0.00 37.67 2.67
3691 4081 9.404848 CCATTGCCATACTGAATATATCAATCT 57.595 33.333 0.00 0.00 37.67 2.40
3714 4104 8.718102 TCTAGTAAATGATACAGTCAAAAGGC 57.282 34.615 0.00 0.00 40.97 4.35
3715 4105 8.318412 TCTAGTAAATGATACAGTCAAAAGGCA 58.682 33.333 0.00 0.00 40.97 4.75
3716 4106 7.944729 AGTAAATGATACAGTCAAAAGGCAT 57.055 32.000 0.00 0.00 40.97 4.40
3717 4107 7.765307 AGTAAATGATACAGTCAAAAGGCATG 58.235 34.615 0.00 0.00 40.97 4.06
3718 4108 6.594788 AAATGATACAGTCAAAAGGCATGT 57.405 33.333 0.00 0.00 40.97 3.21
3719 4109 5.824904 ATGATACAGTCAAAAGGCATGTC 57.175 39.130 0.00 0.00 40.97 3.06
3720 4110 4.009675 TGATACAGTCAAAAGGCATGTCC 58.990 43.478 0.00 0.00 32.78 4.02
3721 4111 4.263462 TGATACAGTCAAAAGGCATGTCCT 60.263 41.667 0.00 0.00 39.66 3.85
3722 4112 3.788227 ACAGTCAAAAGGCATGTCCTA 57.212 42.857 8.81 0.00 46.94 2.94
3723 4113 3.679389 ACAGTCAAAAGGCATGTCCTAG 58.321 45.455 8.81 3.87 46.94 3.02
3724 4114 3.012518 CAGTCAAAAGGCATGTCCTAGG 58.987 50.000 0.82 0.82 46.94 3.02
3725 4115 1.745653 GTCAAAAGGCATGTCCTAGGC 59.254 52.381 2.96 0.00 46.94 3.93
3726 4116 1.635487 TCAAAAGGCATGTCCTAGGCT 59.365 47.619 2.96 0.00 46.94 4.58
3727 4117 2.843730 TCAAAAGGCATGTCCTAGGCTA 59.156 45.455 2.96 0.00 46.94 3.93
3728 4118 3.459598 TCAAAAGGCATGTCCTAGGCTAT 59.540 43.478 2.96 0.00 46.94 2.97
3729 4119 3.778954 AAAGGCATGTCCTAGGCTATC 57.221 47.619 2.96 0.00 46.94 2.08
3730 4120 2.711895 AGGCATGTCCTAGGCTATCT 57.288 50.000 2.96 0.00 45.41 1.98
3731 4121 3.835478 AGGCATGTCCTAGGCTATCTA 57.165 47.619 2.96 0.00 45.41 1.98
3732 4122 4.133526 AGGCATGTCCTAGGCTATCTAA 57.866 45.455 2.96 0.00 45.41 2.10
3733 4123 4.693420 AGGCATGTCCTAGGCTATCTAAT 58.307 43.478 2.96 0.00 45.41 1.73
3734 4124 5.843469 AGGCATGTCCTAGGCTATCTAATA 58.157 41.667 2.96 0.00 45.41 0.98
3735 4125 5.896678 AGGCATGTCCTAGGCTATCTAATAG 59.103 44.000 2.96 0.00 45.41 1.73
3751 4141 9.703892 CTATCTAATAGCTTGCAAGAATACACT 57.296 33.333 30.39 17.50 0.00 3.55
3752 4142 8.600449 ATCTAATAGCTTGCAAGAATACACTC 57.400 34.615 30.39 9.39 0.00 3.51
3753 4143 5.725110 AATAGCTTGCAAGAATACACTCG 57.275 39.130 30.39 0.22 0.00 4.18
3754 4144 1.734465 AGCTTGCAAGAATACACTCGC 59.266 47.619 30.39 11.15 0.00 5.03
3755 4145 1.464608 GCTTGCAAGAATACACTCGCA 59.535 47.619 30.39 0.00 0.00 5.10
3756 4146 2.095768 GCTTGCAAGAATACACTCGCAA 60.096 45.455 30.39 0.00 37.73 4.85
3757 4147 3.482786 CTTGCAAGAATACACTCGCAAC 58.517 45.455 22.31 0.00 35.65 4.17
3758 4148 2.488952 TGCAAGAATACACTCGCAACA 58.511 42.857 0.00 0.00 0.00 3.33
3759 4149 3.073678 TGCAAGAATACACTCGCAACAT 58.926 40.909 0.00 0.00 0.00 2.71
3760 4150 3.501828 TGCAAGAATACACTCGCAACATT 59.498 39.130 0.00 0.00 0.00 2.71
3761 4151 3.848019 GCAAGAATACACTCGCAACATTG 59.152 43.478 0.00 0.00 0.00 2.82
3762 4152 4.406069 CAAGAATACACTCGCAACATTGG 58.594 43.478 0.00 0.00 0.00 3.16
3763 4153 3.937814 AGAATACACTCGCAACATTGGA 58.062 40.909 0.00 0.00 0.00 3.53
3764 4154 3.935203 AGAATACACTCGCAACATTGGAG 59.065 43.478 7.95 7.95 34.07 3.86
3765 4155 1.438651 TACACTCGCAACATTGGAGC 58.561 50.000 8.95 0.00 32.33 4.70
3766 4156 0.250467 ACACTCGCAACATTGGAGCT 60.250 50.000 0.00 0.00 32.33 4.09
3767 4157 0.877071 CACTCGCAACATTGGAGCTT 59.123 50.000 0.00 0.00 32.33 3.74
3768 4158 1.135859 CACTCGCAACATTGGAGCTTC 60.136 52.381 0.00 0.00 32.33 3.86
3769 4159 1.159285 CTCGCAACATTGGAGCTTCA 58.841 50.000 0.00 0.00 0.00 3.02
3770 4160 0.874390 TCGCAACATTGGAGCTTCAC 59.126 50.000 0.00 0.00 0.00 3.18
3771 4161 0.109597 CGCAACATTGGAGCTTCACC 60.110 55.000 0.00 0.00 0.00 4.02
3772 4162 0.961019 GCAACATTGGAGCTTCACCA 59.039 50.000 0.00 0.00 35.47 4.17
3773 4163 1.068055 GCAACATTGGAGCTTCACCAG 60.068 52.381 0.00 0.00 38.70 4.00
3774 4164 2.507484 CAACATTGGAGCTTCACCAGA 58.493 47.619 0.00 0.00 38.70 3.86
3775 4165 2.191128 ACATTGGAGCTTCACCAGAC 57.809 50.000 0.00 0.00 38.70 3.51
3776 4166 1.421268 ACATTGGAGCTTCACCAGACA 59.579 47.619 0.00 0.00 38.70 3.41
3777 4167 2.158623 ACATTGGAGCTTCACCAGACAA 60.159 45.455 0.00 0.00 38.70 3.18
3778 4168 2.957402 TTGGAGCTTCACCAGACAAT 57.043 45.000 0.00 0.00 38.70 2.71
3779 4169 2.957402 TGGAGCTTCACCAGACAATT 57.043 45.000 0.00 0.00 33.22 2.32
3780 4170 2.783135 TGGAGCTTCACCAGACAATTC 58.217 47.619 0.00 0.00 33.22 2.17
3781 4171 2.106338 TGGAGCTTCACCAGACAATTCA 59.894 45.455 0.00 0.00 33.22 2.57
3782 4172 3.245016 TGGAGCTTCACCAGACAATTCAT 60.245 43.478 0.00 0.00 33.22 2.57
3783 4173 3.760684 GGAGCTTCACCAGACAATTCATT 59.239 43.478 0.00 0.00 0.00 2.57
3784 4174 4.219288 GGAGCTTCACCAGACAATTCATTT 59.781 41.667 0.00 0.00 0.00 2.32
3785 4175 5.279156 GGAGCTTCACCAGACAATTCATTTT 60.279 40.000 0.00 0.00 0.00 1.82
3786 4176 6.071952 GGAGCTTCACCAGACAATTCATTTTA 60.072 38.462 0.00 0.00 0.00 1.52
3787 4177 7.363268 GGAGCTTCACCAGACAATTCATTTTAT 60.363 37.037 0.00 0.00 0.00 1.40
3788 4178 7.318141 AGCTTCACCAGACAATTCATTTTATG 58.682 34.615 0.00 0.00 0.00 1.90
3789 4179 7.039504 AGCTTCACCAGACAATTCATTTTATGT 60.040 33.333 0.00 0.00 0.00 2.29
3790 4180 7.599998 GCTTCACCAGACAATTCATTTTATGTT 59.400 33.333 0.00 0.00 0.00 2.71
3791 4181 9.132521 CTTCACCAGACAATTCATTTTATGTTC 57.867 33.333 0.00 0.00 0.00 3.18
3792 4182 8.175925 TCACCAGACAATTCATTTTATGTTCA 57.824 30.769 0.00 0.00 0.00 3.18
3793 4183 8.637099 TCACCAGACAATTCATTTTATGTTCAA 58.363 29.630 0.00 0.00 0.00 2.69
3794 4184 8.918658 CACCAGACAATTCATTTTATGTTCAAG 58.081 33.333 0.00 0.00 0.00 3.02
3795 4185 8.641541 ACCAGACAATTCATTTTATGTTCAAGT 58.358 29.630 0.00 0.00 0.00 3.16
3796 4186 8.918658 CCAGACAATTCATTTTATGTTCAAGTG 58.081 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.110707 GGAATGGAAATTCTCATGCATGTTT 58.889 36.000 25.43 17.96 0.00 2.83
1 2 5.188163 TGGAATGGAAATTCTCATGCATGTT 59.812 36.000 25.43 12.57 0.00 2.71
2 3 4.712829 TGGAATGGAAATTCTCATGCATGT 59.287 37.500 25.43 5.72 0.00 3.21
4 5 4.960469 AGTGGAATGGAAATTCTCATGCAT 59.040 37.500 0.00 0.00 0.00 3.96
5 6 4.346730 AGTGGAATGGAAATTCTCATGCA 58.653 39.130 0.00 0.00 0.00 3.96
6 7 4.996788 AGTGGAATGGAAATTCTCATGC 57.003 40.909 0.00 0.00 0.00 4.06
7 8 6.264744 AGCATAGTGGAATGGAAATTCTCATG 59.735 38.462 0.00 0.00 0.00 3.07
8 9 6.371278 AGCATAGTGGAATGGAAATTCTCAT 58.629 36.000 0.00 0.00 0.00 2.90
9 10 5.759059 AGCATAGTGGAATGGAAATTCTCA 58.241 37.500 0.00 0.00 0.00 3.27
10 11 7.992754 ATAGCATAGTGGAATGGAAATTCTC 57.007 36.000 0.00 0.00 0.00 2.87
11 12 8.773033 AAATAGCATAGTGGAATGGAAATTCT 57.227 30.769 0.00 0.00 0.00 2.40
29 30 9.545105 CTGCCCATTTTTGAAATATAAATAGCA 57.455 29.630 0.00 0.00 32.97 3.49
30 31 8.992073 CCTGCCCATTTTTGAAATATAAATAGC 58.008 33.333 0.00 0.00 0.00 2.97
31 32 9.492973 CCCTGCCCATTTTTGAAATATAAATAG 57.507 33.333 0.00 0.00 0.00 1.73
32 33 9.218525 TCCCTGCCCATTTTTGAAATATAAATA 57.781 29.630 0.00 0.00 0.00 1.40
33 34 8.100135 TCCCTGCCCATTTTTGAAATATAAAT 57.900 30.769 0.00 0.00 0.00 1.40
34 35 7.502060 TCCCTGCCCATTTTTGAAATATAAA 57.498 32.000 0.00 0.00 0.00 1.40
35 36 7.502060 TTCCCTGCCCATTTTTGAAATATAA 57.498 32.000 0.00 0.00 0.00 0.98
36 37 7.502060 TTTCCCTGCCCATTTTTGAAATATA 57.498 32.000 0.00 0.00 0.00 0.86
37 38 6.385766 TTTCCCTGCCCATTTTTGAAATAT 57.614 33.333 0.00 0.00 0.00 1.28
38 39 5.832539 TTTCCCTGCCCATTTTTGAAATA 57.167 34.783 0.00 0.00 0.00 1.40
39 40 4.720775 TTTCCCTGCCCATTTTTGAAAT 57.279 36.364 0.00 0.00 0.00 2.17
40 41 4.720775 ATTTCCCTGCCCATTTTTGAAA 57.279 36.364 0.00 0.00 0.00 2.69
41 42 6.385766 AATATTTCCCTGCCCATTTTTGAA 57.614 33.333 0.00 0.00 0.00 2.69
42 43 6.385766 AAATATTTCCCTGCCCATTTTTGA 57.614 33.333 0.00 0.00 0.00 2.69
43 44 7.609532 TGTAAAATATTTCCCTGCCCATTTTTG 59.390 33.333 0.10 0.00 30.58 2.44
44 45 7.694093 TGTAAAATATTTCCCTGCCCATTTTT 58.306 30.769 0.10 0.00 30.58 1.94
45 46 7.264294 TGTAAAATATTTCCCTGCCCATTTT 57.736 32.000 0.10 0.00 32.21 1.82
46 47 6.882768 TGTAAAATATTTCCCTGCCCATTT 57.117 33.333 0.10 0.00 0.00 2.32
47 48 6.443527 AGTTGTAAAATATTTCCCTGCCCATT 59.556 34.615 0.10 0.00 0.00 3.16
48 49 5.963865 AGTTGTAAAATATTTCCCTGCCCAT 59.036 36.000 0.10 0.00 0.00 4.00
49 50 5.186797 CAGTTGTAAAATATTTCCCTGCCCA 59.813 40.000 0.10 0.00 0.00 5.36
50 51 5.186992 ACAGTTGTAAAATATTTCCCTGCCC 59.813 40.000 0.10 0.00 0.00 5.36
51 52 6.280855 ACAGTTGTAAAATATTTCCCTGCC 57.719 37.500 0.10 0.00 0.00 4.85
52 53 7.822658 TGTACAGTTGTAAAATATTTCCCTGC 58.177 34.615 0.10 0.00 31.52 4.85
60 61 9.681062 AGCAGGTATTGTACAGTTGTAAAATAT 57.319 29.630 14.73 2.03 40.69 1.28
62 63 7.996098 AGCAGGTATTGTACAGTTGTAAAAT 57.004 32.000 11.37 11.37 40.50 1.82
63 64 8.905660 TTAGCAGGTATTGTACAGTTGTAAAA 57.094 30.769 0.00 0.00 32.76 1.52
64 65 8.776470 GTTTAGCAGGTATTGTACAGTTGTAAA 58.224 33.333 0.00 0.00 31.52 2.01
65 66 7.932491 TGTTTAGCAGGTATTGTACAGTTGTAA 59.068 33.333 0.00 0.00 31.52 2.41
66 67 7.385752 GTGTTTAGCAGGTATTGTACAGTTGTA 59.614 37.037 0.00 0.00 0.00 2.41
67 68 6.204108 GTGTTTAGCAGGTATTGTACAGTTGT 59.796 38.462 0.00 0.00 0.00 3.32
68 69 6.203915 TGTGTTTAGCAGGTATTGTACAGTTG 59.796 38.462 0.00 0.00 0.00 3.16
69 70 6.292923 TGTGTTTAGCAGGTATTGTACAGTT 58.707 36.000 0.00 0.00 0.00 3.16
70 71 5.860611 TGTGTTTAGCAGGTATTGTACAGT 58.139 37.500 0.00 0.00 0.00 3.55
71 72 6.795098 TTGTGTTTAGCAGGTATTGTACAG 57.205 37.500 0.00 0.00 0.00 2.74
72 73 8.850007 TTATTGTGTTTAGCAGGTATTGTACA 57.150 30.769 0.00 0.00 0.00 2.90
73 74 9.550811 GTTTATTGTGTTTAGCAGGTATTGTAC 57.449 33.333 0.00 0.00 0.00 2.90
74 75 8.732531 GGTTTATTGTGTTTAGCAGGTATTGTA 58.267 33.333 0.00 0.00 0.00 2.41
75 76 7.231722 TGGTTTATTGTGTTTAGCAGGTATTGT 59.768 33.333 0.00 0.00 0.00 2.71
76 77 7.598278 TGGTTTATTGTGTTTAGCAGGTATTG 58.402 34.615 0.00 0.00 0.00 1.90
77 78 7.768807 TGGTTTATTGTGTTTAGCAGGTATT 57.231 32.000 0.00 0.00 0.00 1.89
78 79 7.630513 GCATGGTTTATTGTGTTTAGCAGGTAT 60.631 37.037 0.00 0.00 0.00 2.73
79 80 6.349777 GCATGGTTTATTGTGTTTAGCAGGTA 60.350 38.462 0.00 0.00 0.00 3.08
80 81 5.566627 GCATGGTTTATTGTGTTTAGCAGGT 60.567 40.000 0.00 0.00 0.00 4.00
81 82 4.864247 GCATGGTTTATTGTGTTTAGCAGG 59.136 41.667 0.00 0.00 0.00 4.85
82 83 4.558470 CGCATGGTTTATTGTGTTTAGCAG 59.442 41.667 0.00 0.00 0.00 4.24
83 84 4.216472 TCGCATGGTTTATTGTGTTTAGCA 59.784 37.500 0.00 0.00 0.00 3.49
84 85 4.728534 TCGCATGGTTTATTGTGTTTAGC 58.271 39.130 0.00 0.00 0.00 3.09
85 86 7.810766 AATTCGCATGGTTTATTGTGTTTAG 57.189 32.000 0.00 0.00 0.00 1.85
86 87 8.594881 AAAATTCGCATGGTTTATTGTGTTTA 57.405 26.923 0.00 0.00 0.00 2.01
87 88 7.489574 AAAATTCGCATGGTTTATTGTGTTT 57.510 28.000 0.00 0.00 0.00 2.83
88 89 8.594881 TTAAAATTCGCATGGTTTATTGTGTT 57.405 26.923 0.00 0.00 0.00 3.32
89 90 7.870445 ACTTAAAATTCGCATGGTTTATTGTGT 59.130 29.630 0.00 0.00 0.00 3.72
90 91 8.238481 ACTTAAAATTCGCATGGTTTATTGTG 57.762 30.769 0.00 0.00 0.00 3.33
91 92 8.303876 AGACTTAAAATTCGCATGGTTTATTGT 58.696 29.630 0.00 0.00 0.00 2.71
92 93 8.687824 AGACTTAAAATTCGCATGGTTTATTG 57.312 30.769 0.00 0.00 0.00 1.90
95 96 9.005777 ACTAAGACTTAAAATTCGCATGGTTTA 57.994 29.630 0.00 0.00 0.00 2.01
96 97 7.882179 ACTAAGACTTAAAATTCGCATGGTTT 58.118 30.769 0.00 0.00 0.00 3.27
97 98 7.448748 ACTAAGACTTAAAATTCGCATGGTT 57.551 32.000 0.00 0.00 0.00 3.67
98 99 7.390718 AGAACTAAGACTTAAAATTCGCATGGT 59.609 33.333 0.00 0.00 0.00 3.55
99 100 7.752695 AGAACTAAGACTTAAAATTCGCATGG 58.247 34.615 0.00 0.00 0.00 3.66
100 101 8.443160 TGAGAACTAAGACTTAAAATTCGCATG 58.557 33.333 12.17 0.00 0.00 4.06
101 102 8.547967 TGAGAACTAAGACTTAAAATTCGCAT 57.452 30.769 12.17 0.00 0.00 4.73
102 103 7.956420 TGAGAACTAAGACTTAAAATTCGCA 57.044 32.000 12.17 12.17 0.00 5.10
148 149 7.644062 TGGGACTTGGTTGTATGGAATATAAA 58.356 34.615 0.00 0.00 31.53 1.40
150 151 6.833346 TGGGACTTGGTTGTATGGAATATA 57.167 37.500 0.00 0.00 0.00 0.86
156 157 2.760092 CCAATGGGACTTGGTTGTATGG 59.240 50.000 0.00 0.00 40.72 2.74
164 165 5.335897 CGCAATATATTCCAATGGGACTTGG 60.336 44.000 0.00 0.00 44.89 3.61
170 171 4.522405 TGTTCCGCAATATATTCCAATGGG 59.478 41.667 0.00 0.00 0.00 4.00
171 172 5.703978 TGTTCCGCAATATATTCCAATGG 57.296 39.130 0.00 0.00 0.00 3.16
200 201 1.141645 TGATAACTCGCGCGTTGTTT 58.858 45.000 33.60 24.83 0.00 2.83
201 202 1.323534 GATGATAACTCGCGCGTTGTT 59.676 47.619 32.13 32.13 0.00 2.83
206 207 3.124316 AGATAGATGATAACTCGCGCG 57.876 47.619 26.76 26.76 0.00 6.86
207 208 5.064198 AGACTAGATAGATGATAACTCGCGC 59.936 44.000 0.00 0.00 0.00 6.86
208 209 6.656314 AGACTAGATAGATGATAACTCGCG 57.344 41.667 0.00 0.00 0.00 5.87
209 210 7.279090 TGCTAGACTAGATAGATGATAACTCGC 59.721 40.741 13.91 0.00 0.00 5.03
210 211 8.710835 TGCTAGACTAGATAGATGATAACTCG 57.289 38.462 13.91 0.00 0.00 4.18
211 212 9.884636 TCTGCTAGACTAGATAGATGATAACTC 57.115 37.037 13.91 0.00 0.00 3.01
216 217 9.806448 TTCTTTCTGCTAGACTAGATAGATGAT 57.194 33.333 13.91 0.00 33.23 2.45
217 218 9.634021 TTTCTTTCTGCTAGACTAGATAGATGA 57.366 33.333 13.91 12.43 33.23 2.92
220 221 8.908903 CCTTTTCTTTCTGCTAGACTAGATAGA 58.091 37.037 13.91 12.16 31.91 1.98
221 222 8.141268 CCCTTTTCTTTCTGCTAGACTAGATAG 58.859 40.741 13.91 10.16 0.00 2.08
222 223 7.839705 TCCCTTTTCTTTCTGCTAGACTAGATA 59.160 37.037 13.91 0.56 0.00 1.98
223 224 6.670027 TCCCTTTTCTTTCTGCTAGACTAGAT 59.330 38.462 13.91 0.00 0.00 1.98
224 225 6.017192 TCCCTTTTCTTTCTGCTAGACTAGA 58.983 40.000 13.91 0.00 0.00 2.43
225 226 6.287589 TCCCTTTTCTTTCTGCTAGACTAG 57.712 41.667 5.03 5.03 0.00 2.57
226 227 6.681729 TTCCCTTTTCTTTCTGCTAGACTA 57.318 37.500 0.00 0.00 0.00 2.59
227 228 5.568620 TTCCCTTTTCTTTCTGCTAGACT 57.431 39.130 0.00 0.00 0.00 3.24
240 241 1.269723 CGGAGGCTTGTTTCCCTTTTC 59.730 52.381 0.00 0.00 0.00 2.29
278 283 3.110031 ACAAGGCAGGGTGGGGTT 61.110 61.111 0.00 0.00 0.00 4.11
280 285 3.260100 AGACAAGGCAGGGTGGGG 61.260 66.667 0.00 0.00 0.00 4.96
304 309 0.523072 CACTGTGCATGTAGGGCAAC 59.477 55.000 0.00 0.00 43.91 4.17
333 338 0.689055 AGCCAGTCAGTGAAGATGCA 59.311 50.000 0.00 0.00 0.00 3.96
361 367 3.006940 TGATTTAATCGCACCAGTGTCC 58.993 45.455 0.23 0.00 0.00 4.02
372 378 2.808543 GGGCTAGCCACTGATTTAATCG 59.191 50.000 34.09 0.00 37.98 3.34
398 404 2.077413 CTGCAGAGTGGAGTGAAGTC 57.923 55.000 8.42 0.00 30.66 3.01
419 425 4.083862 GGTGACAGGAGGACGGGC 62.084 72.222 0.00 0.00 0.00 6.13
424 430 1.079256 CAGAGGGGTGACAGGAGGA 59.921 63.158 0.00 0.00 0.00 3.71
485 495 1.961394 AGCCAATCATGCATCATCACC 59.039 47.619 0.00 0.00 0.00 4.02
486 496 2.621526 TCAGCCAATCATGCATCATCAC 59.378 45.455 0.00 0.00 0.00 3.06
487 497 2.938838 TCAGCCAATCATGCATCATCA 58.061 42.857 0.00 0.00 0.00 3.07
488 498 4.438880 GCTATCAGCCAATCATGCATCATC 60.439 45.833 0.00 0.00 34.48 2.92
489 499 3.444034 GCTATCAGCCAATCATGCATCAT 59.556 43.478 0.00 0.00 34.48 2.45
490 500 2.817844 GCTATCAGCCAATCATGCATCA 59.182 45.455 0.00 0.00 34.48 3.07
491 501 3.082548 AGCTATCAGCCAATCATGCATC 58.917 45.455 0.00 0.00 43.77 3.91
492 502 2.820197 CAGCTATCAGCCAATCATGCAT 59.180 45.455 0.00 0.00 43.77 3.96
493 503 2.227194 CAGCTATCAGCCAATCATGCA 58.773 47.619 0.00 0.00 43.77 3.96
494 504 2.031069 CACAGCTATCAGCCAATCATGC 60.031 50.000 0.00 0.00 43.77 4.06
495 505 2.552743 CCACAGCTATCAGCCAATCATG 59.447 50.000 0.00 0.00 43.77 3.07
496 506 2.488528 CCCACAGCTATCAGCCAATCAT 60.489 50.000 0.00 0.00 43.77 2.45
497 507 1.134007 CCCACAGCTATCAGCCAATCA 60.134 52.381 0.00 0.00 43.77 2.57
498 508 1.602311 CCCACAGCTATCAGCCAATC 58.398 55.000 0.00 0.00 43.77 2.67
499 509 0.184451 CCCCACAGCTATCAGCCAAT 59.816 55.000 0.00 0.00 43.77 3.16
500 510 1.207488 ACCCCACAGCTATCAGCCAA 61.207 55.000 0.00 0.00 43.77 4.52
501 511 1.207488 AACCCCACAGCTATCAGCCA 61.207 55.000 0.00 0.00 43.77 4.75
502 512 0.837272 TAACCCCACAGCTATCAGCC 59.163 55.000 0.00 0.00 43.77 4.85
503 513 1.209504 TGTAACCCCACAGCTATCAGC 59.790 52.381 0.00 0.00 42.84 4.26
504 514 3.185246 CTGTAACCCCACAGCTATCAG 57.815 52.381 0.00 0.00 39.54 2.90
512 522 1.803866 TGTACCACTGTAACCCCACA 58.196 50.000 0.00 0.00 0.00 4.17
513 523 2.039348 ACATGTACCACTGTAACCCCAC 59.961 50.000 0.00 0.00 0.00 4.61
514 524 2.340731 ACATGTACCACTGTAACCCCA 58.659 47.619 0.00 0.00 0.00 4.96
515 525 3.770933 TCTACATGTACCACTGTAACCCC 59.229 47.826 0.08 0.00 0.00 4.95
516 526 4.465305 AGTCTACATGTACCACTGTAACCC 59.535 45.833 0.08 0.00 0.00 4.11
517 527 5.656213 AGTCTACATGTACCACTGTAACC 57.344 43.478 0.08 0.00 0.00 2.85
518 528 6.453092 ACAAGTCTACATGTACCACTGTAAC 58.547 40.000 11.77 0.00 0.00 2.50
519 529 6.569035 CGACAAGTCTACATGTACCACTGTAA 60.569 42.308 11.77 0.00 0.00 2.41
520 530 5.106436 CGACAAGTCTACATGTACCACTGTA 60.106 44.000 11.77 0.00 0.00 2.74
521 531 4.321008 CGACAAGTCTACATGTACCACTGT 60.321 45.833 11.77 8.79 0.00 3.55
522 532 4.082949 TCGACAAGTCTACATGTACCACTG 60.083 45.833 11.77 6.24 0.00 3.66
523 533 4.077108 TCGACAAGTCTACATGTACCACT 58.923 43.478 0.08 4.27 0.00 4.00
524 534 4.430137 TCGACAAGTCTACATGTACCAC 57.570 45.455 0.08 1.86 0.00 4.16
525 535 6.762702 TTATCGACAAGTCTACATGTACCA 57.237 37.500 0.08 0.00 0.00 3.25
553 563 5.704515 GGTCCTGCGTACTCATCTATAGTTA 59.295 44.000 0.00 0.00 0.00 2.24
554 564 4.519730 GGTCCTGCGTACTCATCTATAGTT 59.480 45.833 0.00 0.00 0.00 2.24
555 565 4.073549 GGTCCTGCGTACTCATCTATAGT 58.926 47.826 0.00 0.00 0.00 2.12
556 566 4.072839 TGGTCCTGCGTACTCATCTATAG 58.927 47.826 0.00 0.00 0.00 1.31
557 567 4.094830 TGGTCCTGCGTACTCATCTATA 57.905 45.455 0.00 0.00 0.00 1.31
558 568 2.945456 TGGTCCTGCGTACTCATCTAT 58.055 47.619 0.00 0.00 0.00 1.98
562 572 3.256879 CAGATATGGTCCTGCGTACTCAT 59.743 47.826 0.00 0.00 0.00 2.90
564 574 2.608261 GCAGATATGGTCCTGCGTACTC 60.608 54.545 0.00 0.00 44.99 2.59
580 590 3.701205 TGTACCACATTGACAGCAGAT 57.299 42.857 0.00 0.00 0.00 2.90
581 591 3.701205 ATGTACCACATTGACAGCAGA 57.299 42.857 0.00 0.00 34.67 4.26
596 606 4.024556 GCTGGATGTTGACTGCATATGTAC 60.025 45.833 4.29 0.00 0.00 2.90
666 676 3.429410 GCAATTAAGGCAACATGAGACCC 60.429 47.826 0.00 0.00 41.41 4.46
667 677 3.429410 GGCAATTAAGGCAACATGAGACC 60.429 47.826 0.00 0.00 41.41 3.85
700 710 5.222631 GCAACTAACATGAGACCCTTTTTG 58.777 41.667 0.00 0.00 0.00 2.44
752 770 2.291741 GCAATGGCAGGAACAGCTATAC 59.708 50.000 0.00 0.00 41.74 1.47
801 819 5.012239 ACGACAGGTATTTGACTAGTACCA 58.988 41.667 13.09 0.00 40.23 3.25
802 820 5.338365 CACGACAGGTATTTGACTAGTACC 58.662 45.833 0.00 0.00 38.49 3.34
853 884 1.847088 AGGAAGAAGGCCTTATGGGTC 59.153 52.381 20.54 9.98 40.74 4.46
860 891 0.617935 GCTGAGAGGAAGAAGGCCTT 59.382 55.000 20.65 20.65 35.44 4.35
861 892 0.252650 AGCTGAGAGGAAGAAGGCCT 60.253 55.000 0.00 0.00 38.81 5.19
944 986 2.093021 GCCTTCTCTGATCAGGAAGCTT 60.093 50.000 29.79 0.00 35.89 3.74
979 1021 5.507985 CCATTCAAACCAACTCTCTGTTTCC 60.508 44.000 0.00 0.00 36.63 3.13
989 1031 2.365293 GCTTCCACCATTCAAACCAACT 59.635 45.455 0.00 0.00 0.00 3.16
1100 1170 3.796504 GCACGGGCATAATTTGAAGGATG 60.797 47.826 3.77 0.00 40.72 3.51
1186 1351 4.451891 TGAGATCCTGCATAGAGAGAGT 57.548 45.455 0.00 0.00 0.00 3.24
1233 1398 0.574454 GCTCGAAATACTCTGCTGCG 59.426 55.000 0.00 0.00 0.00 5.18
1254 1419 1.377333 GCCTTCCTGTGTGTAGGCC 60.377 63.158 0.00 0.00 45.87 5.19
1273 1438 1.076533 ATGACGTACGCCTGCTTTCG 61.077 55.000 16.72 0.00 0.00 3.46
1398 1644 1.221840 CAGGGCCTTCACAGCGTAT 59.778 57.895 1.32 0.00 0.00 3.06
1416 1662 3.963428 AGGTGATCTACAGTGTTGACC 57.037 47.619 9.64 7.62 0.00 4.02
1444 1690 3.198853 AGGCTGGAGACTTTGAAGGATAC 59.801 47.826 0.00 0.00 0.00 2.24
1585 1834 1.603326 GAAACCAACCGCCTCGTTAAA 59.397 47.619 0.00 0.00 0.00 1.52
1625 1878 0.094216 CTTCTCTGTTCACGCATGCG 59.906 55.000 36.79 36.79 46.03 4.73
1665 1918 1.659622 TACTTTGGAGCGGCGATCGA 61.660 55.000 21.57 13.12 42.43 3.59
1666 1919 0.597637 ATACTTTGGAGCGGCGATCG 60.598 55.000 19.61 11.69 42.76 3.69
1739 1996 1.466558 GCTAGAAAACAGAGCCACAGC 59.533 52.381 0.00 0.00 40.32 4.40
1778 2035 1.470098 CCCTCATCCACTTTTCTTGCG 59.530 52.381 0.00 0.00 0.00 4.85
1832 2090 5.489792 TCTCCTGCTGAAATCACTTTAGT 57.510 39.130 0.00 0.00 0.00 2.24
1834 2092 5.188434 CCATCTCCTGCTGAAATCACTTTA 58.812 41.667 0.00 0.00 0.00 1.85
1835 2093 4.015084 CCATCTCCTGCTGAAATCACTTT 58.985 43.478 0.00 0.00 0.00 2.66
1879 2137 5.112686 ACCTTATTCATCTCGCTGAAGTTC 58.887 41.667 0.00 0.00 38.47 3.01
1916 2174 3.962421 GGCCTGATGCATCTGCGC 61.962 66.667 26.32 25.64 45.83 6.09
1974 2232 4.455533 TCAAGTGCAAGATATCCAACACAC 59.544 41.667 17.14 11.12 0.00 3.82
1978 2236 7.274250 GTCAAAATCAAGTGCAAGATATCCAAC 59.726 37.037 0.00 0.00 0.00 3.77
1991 2253 4.240096 GCATTCCAGGTCAAAATCAAGTG 58.760 43.478 0.00 0.00 0.00 3.16
2104 2369 5.183140 GCAAAGTAAGAAACCCAAGCTGATA 59.817 40.000 0.00 0.00 0.00 2.15
2323 2602 1.069296 CATTTCGCGGAAACTGAAGCA 60.069 47.619 2.72 0.00 34.23 3.91
2324 2603 1.196808 TCATTTCGCGGAAACTGAAGC 59.803 47.619 2.72 0.00 34.23 3.86
2330 2609 4.092968 ACTCTGTAATCATTTCGCGGAAAC 59.907 41.667 2.72 0.00 34.23 2.78
2331 2610 4.250464 ACTCTGTAATCATTTCGCGGAAA 58.750 39.130 2.72 4.98 35.94 3.13
2399 2683 3.080300 ACAAGATTGGCCACGGAATAA 57.920 42.857 3.88 0.00 0.00 1.40
2401 2685 1.923356 AACAAGATTGGCCACGGAAT 58.077 45.000 3.88 0.00 0.00 3.01
2425 2709 8.552034 GGTGAATCCGATCTTTTATCTGTTAAG 58.448 37.037 0.00 0.00 0.00 1.85
2460 2744 1.837439 ACCTTGTGAGTGGAGTTGTCA 59.163 47.619 0.00 0.00 0.00 3.58
2616 2901 4.094590 GGATCTGAAGTTGTCTGCATCTTG 59.905 45.833 0.00 0.00 35.47 3.02
2668 2953 5.045651 TGGAATCATCATTGTACCTGTCAGT 60.046 40.000 0.00 0.00 0.00 3.41
2693 2978 0.037882 CAGAGTCTGCTCGCTTTCCA 60.038 55.000 7.33 0.00 46.03 3.53
2719 3004 3.070748 GAGACTTGAGGAACTTCTTGCC 58.929 50.000 0.00 0.00 41.55 4.52
2813 3098 9.832445 GATAGTAATGGACACTCCTATGAAAAA 57.168 33.333 0.00 0.00 37.46 1.94
2814 3099 8.429641 GGATAGTAATGGACACTCCTATGAAAA 58.570 37.037 0.00 0.00 37.46 2.29
2909 3194 4.475944 CTTAAGCACCGTCTTTCAAATGG 58.524 43.478 0.00 0.00 0.00 3.16
2983 3270 1.195115 ACGTCATCCAGCACACCTAT 58.805 50.000 0.00 0.00 0.00 2.57
3154 3442 3.867493 TGAGAGTCTTAAATCTGCGCATG 59.133 43.478 12.24 5.41 0.00 4.06
3208 3591 6.797033 CCGTTTCTAGAAAATACAAACTGCAG 59.203 38.462 19.30 13.48 31.33 4.41
3209 3592 6.293735 CCCGTTTCTAGAAAATACAAACTGCA 60.294 38.462 19.30 0.00 31.33 4.41
3211 3594 7.075741 CACCCGTTTCTAGAAAATACAAACTG 58.924 38.462 19.30 3.01 31.33 3.16
3212 3595 6.293790 GCACCCGTTTCTAGAAAATACAAACT 60.294 38.462 19.30 0.00 31.33 2.66
3214 3597 5.334260 CGCACCCGTTTCTAGAAAATACAAA 60.334 40.000 19.30 0.00 31.33 2.83
3323 3707 0.037303 AGGATGTTGTCAGGCACCAG 59.963 55.000 0.00 0.00 0.00 4.00
3329 3713 4.278170 TGCACTTTTAAGGATGTTGTCAGG 59.722 41.667 0.00 0.00 0.00 3.86
3436 3822 4.866486 GCATTGGCCAGAACATAGAAAAAG 59.134 41.667 5.11 0.00 0.00 2.27
3444 3830 4.733165 ACATATAGCATTGGCCAGAACAT 58.267 39.130 5.11 0.00 42.56 2.71
3474 3862 8.687292 AGGACGACATGTACTGAATAAGTATA 57.313 34.615 0.00 0.00 41.53 1.47
3475 3863 7.502895 AGAGGACGACATGTACTGAATAAGTAT 59.497 37.037 0.00 0.00 43.84 2.12
3476 3864 6.827251 AGAGGACGACATGTACTGAATAAGTA 59.173 38.462 0.00 0.00 43.84 2.24
3477 3865 5.652891 AGAGGACGACATGTACTGAATAAGT 59.347 40.000 0.00 0.00 43.84 2.24
3522 3910 4.147322 GTCCACGCAACGGCATCG 62.147 66.667 0.00 0.00 41.24 3.84
3534 3922 1.069358 GCAGAGTAGGCCATAGTCCAC 59.931 57.143 5.01 0.00 34.77 4.02
3535 3923 1.062886 AGCAGAGTAGGCCATAGTCCA 60.063 52.381 5.01 0.00 34.77 4.02
3536 3924 1.710816 AGCAGAGTAGGCCATAGTCC 58.289 55.000 5.01 0.00 34.77 3.85
3537 3925 3.828875 AAAGCAGAGTAGGCCATAGTC 57.171 47.619 5.01 7.21 34.47 2.59
3538 3926 4.019321 TCAAAAAGCAGAGTAGGCCATAGT 60.019 41.667 5.01 0.00 0.00 2.12
3539 3927 4.517285 TCAAAAAGCAGAGTAGGCCATAG 58.483 43.478 5.01 0.00 0.00 2.23
3540 3928 4.568072 TCAAAAAGCAGAGTAGGCCATA 57.432 40.909 5.01 0.00 0.00 2.74
3541 3929 3.439857 TCAAAAAGCAGAGTAGGCCAT 57.560 42.857 5.01 0.00 0.00 4.40
3542 3930 2.949177 TCAAAAAGCAGAGTAGGCCA 57.051 45.000 5.01 0.00 0.00 5.36
3543 3931 4.790765 AAATCAAAAAGCAGAGTAGGCC 57.209 40.909 0.00 0.00 0.00 5.19
3552 3941 2.637382 GGGGAGGGAAAATCAAAAAGCA 59.363 45.455 0.00 0.00 0.00 3.91
3555 3944 2.637382 GCAGGGGAGGGAAAATCAAAAA 59.363 45.455 0.00 0.00 0.00 1.94
3573 3962 5.605534 ACACAAGATAATACCTAGCTGCAG 58.394 41.667 10.11 10.11 0.00 4.41
3575 3964 5.467063 GGAACACAAGATAATACCTAGCTGC 59.533 44.000 0.00 0.00 0.00 5.25
3577 3966 6.183361 CCAGGAACACAAGATAATACCTAGCT 60.183 42.308 0.00 0.00 0.00 3.32
3603 3993 6.463190 GGGAAAGGCCACTGTATAAACAAAAA 60.463 38.462 5.01 0.00 38.95 1.94
3619 4009 4.282881 CCATGGATGGGAAAGGCC 57.717 61.111 5.56 0.00 44.31 5.19
3643 4033 4.537015 GGTGGCGCAGATACATTAAATTC 58.463 43.478 10.83 0.00 0.00 2.17
3688 4078 9.331282 GCCTTTTGACTGTATCATTTACTAGAT 57.669 33.333 0.00 0.00 37.11 1.98
3689 4079 8.318412 TGCCTTTTGACTGTATCATTTACTAGA 58.682 33.333 0.00 0.00 37.11 2.43
3690 4080 8.492673 TGCCTTTTGACTGTATCATTTACTAG 57.507 34.615 0.00 0.00 37.11 2.57
3691 4081 8.892723 CATGCCTTTTGACTGTATCATTTACTA 58.107 33.333 0.00 0.00 37.11 1.82
3692 4082 7.394359 ACATGCCTTTTGACTGTATCATTTACT 59.606 33.333 0.00 0.00 37.11 2.24
3693 4083 7.538575 ACATGCCTTTTGACTGTATCATTTAC 58.461 34.615 0.00 0.00 37.11 2.01
3694 4084 7.148086 GGACATGCCTTTTGACTGTATCATTTA 60.148 37.037 0.00 0.00 37.11 1.40
3695 4085 6.350445 GGACATGCCTTTTGACTGTATCATTT 60.350 38.462 0.00 0.00 37.11 2.32
3696 4086 5.126061 GGACATGCCTTTTGACTGTATCATT 59.874 40.000 0.00 0.00 37.11 2.57
3697 4087 4.641989 GGACATGCCTTTTGACTGTATCAT 59.358 41.667 0.00 0.00 37.11 2.45
3698 4088 4.009675 GGACATGCCTTTTGACTGTATCA 58.990 43.478 0.00 0.00 34.65 2.15
3699 4089 4.622701 GGACATGCCTTTTGACTGTATC 57.377 45.455 0.00 0.00 0.00 2.24
3712 4102 6.155475 CTATTAGATAGCCTAGGACATGCC 57.845 45.833 14.75 0.00 0.00 4.40
3725 4115 9.703892 AGTGTATTCTTGCAAGCTATTAGATAG 57.296 33.333 21.99 0.00 35.94 2.08
3726 4116 9.698309 GAGTGTATTCTTGCAAGCTATTAGATA 57.302 33.333 21.99 7.77 0.00 1.98
3727 4117 7.383572 CGAGTGTATTCTTGCAAGCTATTAGAT 59.616 37.037 21.99 8.62 0.00 1.98
3728 4118 6.697455 CGAGTGTATTCTTGCAAGCTATTAGA 59.303 38.462 21.99 0.00 0.00 2.10
3729 4119 6.563010 GCGAGTGTATTCTTGCAAGCTATTAG 60.563 42.308 21.99 8.10 42.54 1.73
3730 4120 5.234329 GCGAGTGTATTCTTGCAAGCTATTA 59.766 40.000 21.99 7.38 42.54 0.98
3731 4121 4.034510 GCGAGTGTATTCTTGCAAGCTATT 59.965 41.667 21.99 8.32 42.54 1.73
3732 4122 3.557595 GCGAGTGTATTCTTGCAAGCTAT 59.442 43.478 21.99 18.00 42.54 2.97
3733 4123 2.930040 GCGAGTGTATTCTTGCAAGCTA 59.070 45.455 21.99 12.21 42.54 3.32
3734 4124 1.734465 GCGAGTGTATTCTTGCAAGCT 59.266 47.619 21.99 11.47 42.54 3.74
3735 4125 2.165282 GCGAGTGTATTCTTGCAAGC 57.835 50.000 21.99 8.18 42.54 4.01
3739 4129 3.747099 ATGTTGCGAGTGTATTCTTGC 57.253 42.857 0.00 0.00 43.10 4.01
3740 4130 4.154015 TCCAATGTTGCGAGTGTATTCTTG 59.846 41.667 0.00 0.00 0.00 3.02
3741 4131 4.323417 TCCAATGTTGCGAGTGTATTCTT 58.677 39.130 0.00 0.00 0.00 2.52
3742 4132 3.935203 CTCCAATGTTGCGAGTGTATTCT 59.065 43.478 0.00 0.00 0.00 2.40
3743 4133 3.485877 GCTCCAATGTTGCGAGTGTATTC 60.486 47.826 10.69 0.00 31.98 1.75
3744 4134 2.420022 GCTCCAATGTTGCGAGTGTATT 59.580 45.455 10.69 0.00 31.98 1.89
3745 4135 2.009774 GCTCCAATGTTGCGAGTGTAT 58.990 47.619 10.69 0.00 31.98 2.29
3746 4136 1.001974 AGCTCCAATGTTGCGAGTGTA 59.998 47.619 10.69 0.00 31.98 2.90
3747 4137 0.250467 AGCTCCAATGTTGCGAGTGT 60.250 50.000 10.69 0.99 31.98 3.55
3748 4138 0.877071 AAGCTCCAATGTTGCGAGTG 59.123 50.000 0.00 0.00 31.98 3.51
3749 4139 1.160137 GAAGCTCCAATGTTGCGAGT 58.840 50.000 0.00 0.00 31.98 4.18
3750 4140 1.135859 GTGAAGCTCCAATGTTGCGAG 60.136 52.381 0.00 6.79 0.00 5.03
3751 4141 0.874390 GTGAAGCTCCAATGTTGCGA 59.126 50.000 0.00 0.00 0.00 5.10
3752 4142 0.109597 GGTGAAGCTCCAATGTTGCG 60.110 55.000 0.00 0.00 0.00 4.85
3753 4143 0.961019 TGGTGAAGCTCCAATGTTGC 59.039 50.000 0.00 0.00 31.50 4.17
3754 4144 2.227388 GTCTGGTGAAGCTCCAATGTTG 59.773 50.000 0.00 0.00 34.35 3.33
3755 4145 2.158623 TGTCTGGTGAAGCTCCAATGTT 60.159 45.455 0.00 0.00 34.35 2.71
3756 4146 1.421268 TGTCTGGTGAAGCTCCAATGT 59.579 47.619 0.00 0.00 34.35 2.71
3757 4147 2.189594 TGTCTGGTGAAGCTCCAATG 57.810 50.000 0.00 0.00 34.35 2.82
3758 4148 2.957402 TTGTCTGGTGAAGCTCCAAT 57.043 45.000 0.00 0.00 34.35 3.16
3759 4149 2.957402 ATTGTCTGGTGAAGCTCCAA 57.043 45.000 0.00 0.00 34.35 3.53
3760 4150 2.106338 TGAATTGTCTGGTGAAGCTCCA 59.894 45.455 0.00 0.00 0.00 3.86
3761 4151 2.783135 TGAATTGTCTGGTGAAGCTCC 58.217 47.619 0.00 0.00 0.00 4.70
3762 4152 5.382618 AAATGAATTGTCTGGTGAAGCTC 57.617 39.130 0.00 0.00 0.00 4.09
3763 4153 5.796424 AAAATGAATTGTCTGGTGAAGCT 57.204 34.783 0.00 0.00 0.00 3.74
3764 4154 7.092716 ACATAAAATGAATTGTCTGGTGAAGC 58.907 34.615 0.00 0.00 0.00 3.86
3765 4155 9.132521 GAACATAAAATGAATTGTCTGGTGAAG 57.867 33.333 0.00 0.00 0.00 3.02
3766 4156 8.637099 TGAACATAAAATGAATTGTCTGGTGAA 58.363 29.630 0.00 0.00 0.00 3.18
3767 4157 8.175925 TGAACATAAAATGAATTGTCTGGTGA 57.824 30.769 0.00 0.00 0.00 4.02
3768 4158 8.815141 TTGAACATAAAATGAATTGTCTGGTG 57.185 30.769 0.00 0.00 0.00 4.17
3769 4159 8.641541 ACTTGAACATAAAATGAATTGTCTGGT 58.358 29.630 0.00 0.00 0.00 4.00
3770 4160 8.918658 CACTTGAACATAAAATGAATTGTCTGG 58.081 33.333 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.