Multiple sequence alignment - TraesCS1A01G055300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G055300 chr1A 100.000 3005 0 0 1 3005 36554374 36557378 0.000000e+00 5550.0
1 TraesCS1A01G055300 chr1A 96.154 52 0 2 2448 2497 488648822 488648873 1.920000e-12 84.2
2 TraesCS1A01G055300 chr1B 91.654 2037 101 27 437 2436 56976079 56978083 0.000000e+00 2756.0
3 TraesCS1A01G055300 chr1B 95.592 431 19 0 2 432 46085593 46086023 0.000000e+00 691.0
4 TraesCS1A01G055300 chr1B 95.360 431 20 0 2 432 46015580 46016010 0.000000e+00 686.0
5 TraesCS1A01G055300 chr1B 100.000 28 0 0 2431 2458 111586921 111586894 5.000000e-03 52.8
6 TraesCS1A01G055300 chr1B 100.000 28 0 0 2431 2458 206750111 206750084 5.000000e-03 52.8
7 TraesCS1A01G055300 chr1D 93.645 1605 48 17 682 2255 37203363 37204944 0.000000e+00 2350.0
8 TraesCS1A01G055300 chr1D 88.641 493 17 7 1767 2255 37206052 37206509 5.620000e-157 564.0
9 TraesCS1A01G055300 chr1D 92.015 263 10 6 2185 2444 37206529 37206783 2.850000e-95 359.0
10 TraesCS1A01G055300 chr1D 90.612 245 15 4 2196 2438 37204966 37205204 4.830000e-83 318.0
11 TraesCS1A01G055300 chr2A 98.736 554 7 0 2452 3005 200062618 200062065 0.000000e+00 985.0
12 TraesCS1A01G055300 chr2A 98.375 554 9 0 2452 3005 205087891 205088444 0.000000e+00 974.0
13 TraesCS1A01G055300 chr2A 94.931 434 22 0 2 435 90766209 90766642 0.000000e+00 680.0
14 TraesCS1A01G055300 chr2A 84.553 369 39 13 2512 2867 625563658 625563295 1.710000e-92 350.0
15 TraesCS1A01G055300 chr2A 89.268 205 19 2 2495 2699 724416012 724415811 1.380000e-63 254.0
16 TraesCS1A01G055300 chr2A 88.406 207 23 1 2493 2699 201000390 201000185 6.430000e-62 248.0
17 TraesCS1A01G055300 chr2A 100.000 42 0 0 2454 2495 124206353 124206394 8.930000e-11 78.7
18 TraesCS1A01G055300 chr5A 97.122 556 16 0 2450 3005 143586859 143587414 0.000000e+00 939.0
19 TraesCS1A01G055300 chr5A 96.570 554 16 1 2455 3005 618371687 618372240 0.000000e+00 915.0
20 TraesCS1A01G055300 chr5A 96.991 432 13 0 2 433 502896611 502896180 0.000000e+00 726.0
21 TraesCS1A01G055300 chr6A 97.229 433 12 0 2 434 93078867 93079299 0.000000e+00 734.0
22 TraesCS1A01G055300 chr6A 95.632 435 19 0 2 436 40297309 40297743 0.000000e+00 699.0
23 TraesCS1A01G055300 chr6D 96.279 430 15 1 2 431 464693603 464694031 0.000000e+00 704.0
24 TraesCS1A01G055300 chr3B 95.392 434 20 0 2 435 82343450 82343883 0.000000e+00 691.0
25 TraesCS1A01G055300 chr3B 95.592 431 15 1 2 432 61700842 61700416 0.000000e+00 688.0
26 TraesCS1A01G055300 chr3B 94.118 51 0 3 2450 2497 820189015 820189065 1.160000e-09 75.0
27 TraesCS1A01G055300 chr7D 89.403 519 48 4 2493 3005 407667308 407666791 0.000000e+00 647.0
28 TraesCS1A01G055300 chr7D 95.833 48 0 2 2452 2497 617651113 617651160 3.210000e-10 76.8
29 TraesCS1A01G055300 chr7D 95.745 47 0 2 2453 2497 407705802 407705756 1.160000e-09 75.0
30 TraesCS1A01G055300 chr2D 88.406 207 23 1 2493 2699 188010765 188010560 6.430000e-62 248.0
31 TraesCS1A01G055300 chr7B 88.000 75 9 0 445 519 716720682 716720608 4.130000e-14 89.8
32 TraesCS1A01G055300 chr7B 100.000 28 0 0 2431 2458 289577740 289577713 5.000000e-03 52.8
33 TraesCS1A01G055300 chr7B 100.000 28 0 0 2431 2458 355482990 355483017 5.000000e-03 52.8
34 TraesCS1A01G055300 chr6B 100.000 28 0 0 2431 2458 273665300 273665327 5.000000e-03 52.8
35 TraesCS1A01G055300 chr5D 100.000 28 0 0 2425 2452 558337440 558337413 5.000000e-03 52.8
36 TraesCS1A01G055300 chr5B 100.000 28 0 0 2431 2458 373875602 373875629 5.000000e-03 52.8
37 TraesCS1A01G055300 chr4B 100.000 28 0 0 2431 2458 167058428 167058401 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G055300 chr1A 36554374 36557378 3004 False 5550.00 5550 100.00000 1 3005 1 chr1A.!!$F1 3004
1 TraesCS1A01G055300 chr1B 56976079 56978083 2004 False 2756.00 2756 91.65400 437 2436 1 chr1B.!!$F3 1999
2 TraesCS1A01G055300 chr1D 37203363 37206783 3420 False 897.75 2350 91.22825 682 2444 4 chr1D.!!$F1 1762
3 TraesCS1A01G055300 chr2A 200062065 200062618 553 True 985.00 985 98.73600 2452 3005 1 chr2A.!!$R1 553
4 TraesCS1A01G055300 chr2A 205087891 205088444 553 False 974.00 974 98.37500 2452 3005 1 chr2A.!!$F3 553
5 TraesCS1A01G055300 chr5A 143586859 143587414 555 False 939.00 939 97.12200 2450 3005 1 chr5A.!!$F1 555
6 TraesCS1A01G055300 chr5A 618371687 618372240 553 False 915.00 915 96.57000 2455 3005 1 chr5A.!!$F2 550
7 TraesCS1A01G055300 chr7D 407666791 407667308 517 True 647.00 647 89.40300 2493 3005 1 chr7D.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 924 0.035439 TTCCTCTCCGCCAACCATTC 60.035 55.0 0.0 0.0 0.0 2.67 F
919 959 0.537188 TCCACCTCTCATTCTTCCGC 59.463 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1861 1.476845 TTCCTTGGCTGTGCGGAGTA 61.477 55.0 0.0 0.0 0.0 2.59 R
2080 2120 2.419574 GCGGGTGGAATCTAGTAAGCAA 60.420 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.482721 CGTAATTCGGGATTGTATGGGC 59.517 50.000 0.00 0.00 35.71 5.36
22 23 1.604604 AATTCGGGATTGTATGGGCG 58.395 50.000 0.00 0.00 0.00 6.13
23 24 0.889186 ATTCGGGATTGTATGGGCGC 60.889 55.000 0.00 0.00 0.00 6.53
24 25 1.978455 TTCGGGATTGTATGGGCGCT 61.978 55.000 7.64 0.00 0.00 5.92
25 26 1.525995 CGGGATTGTATGGGCGCTT 60.526 57.895 7.64 0.00 0.00 4.68
26 27 1.101049 CGGGATTGTATGGGCGCTTT 61.101 55.000 7.64 0.00 0.00 3.51
27 28 1.111277 GGGATTGTATGGGCGCTTTT 58.889 50.000 7.64 0.00 0.00 2.27
28 29 2.303175 GGGATTGTATGGGCGCTTTTA 58.697 47.619 7.64 0.00 0.00 1.52
29 30 2.890945 GGGATTGTATGGGCGCTTTTAT 59.109 45.455 7.64 0.00 0.00 1.40
30 31 3.320826 GGGATTGTATGGGCGCTTTTATT 59.679 43.478 7.64 0.00 0.00 1.40
31 32 4.298332 GGATTGTATGGGCGCTTTTATTG 58.702 43.478 7.64 0.00 0.00 1.90
32 33 2.861462 TGTATGGGCGCTTTTATTGC 57.139 45.000 7.64 0.00 0.00 3.56
33 34 2.095461 TGTATGGGCGCTTTTATTGCA 58.905 42.857 7.64 0.00 0.00 4.08
34 35 2.098934 TGTATGGGCGCTTTTATTGCAG 59.901 45.455 7.64 0.00 0.00 4.41
35 36 0.461135 ATGGGCGCTTTTATTGCAGG 59.539 50.000 7.64 0.00 0.00 4.85
36 37 0.610509 TGGGCGCTTTTATTGCAGGA 60.611 50.000 7.64 0.00 0.00 3.86
37 38 0.746659 GGGCGCTTTTATTGCAGGAT 59.253 50.000 7.64 0.00 0.00 3.24
38 39 1.536709 GGGCGCTTTTATTGCAGGATG 60.537 52.381 7.64 0.00 40.87 3.51
39 40 1.134946 GGCGCTTTTATTGCAGGATGT 59.865 47.619 7.64 0.00 39.31 3.06
40 41 2.417243 GGCGCTTTTATTGCAGGATGTT 60.417 45.455 7.64 0.00 39.31 2.71
41 42 2.599973 GCGCTTTTATTGCAGGATGTTG 59.400 45.455 0.00 0.00 39.31 3.33
42 43 3.836949 CGCTTTTATTGCAGGATGTTGT 58.163 40.909 0.00 0.00 39.31 3.32
43 44 4.236935 CGCTTTTATTGCAGGATGTTGTT 58.763 39.130 0.00 0.00 39.31 2.83
44 45 5.398169 CGCTTTTATTGCAGGATGTTGTTA 58.602 37.500 0.00 0.00 39.31 2.41
45 46 6.035843 CGCTTTTATTGCAGGATGTTGTTAT 58.964 36.000 0.00 0.00 39.31 1.89
46 47 6.531240 CGCTTTTATTGCAGGATGTTGTTATT 59.469 34.615 0.00 0.00 39.31 1.40
47 48 7.700234 CGCTTTTATTGCAGGATGTTGTTATTA 59.300 33.333 0.00 0.00 39.31 0.98
48 49 9.533253 GCTTTTATTGCAGGATGTTGTTATTAT 57.467 29.630 0.00 0.00 39.31 1.28
55 56 7.479980 TGCAGGATGTTGTTATTATAAACAGC 58.520 34.615 0.00 0.00 39.99 4.40
63 64 9.949174 TGTTGTTATTATAAACAGCATGCTATG 57.051 29.630 22.19 12.96 43.04 2.23
64 65 9.398170 GTTGTTATTATAAACAGCATGCTATGG 57.602 33.333 22.19 11.18 42.53 2.74
65 66 8.916628 TGTTATTATAAACAGCATGCTATGGA 57.083 30.769 22.19 6.95 42.53 3.41
66 67 9.519191 TGTTATTATAAACAGCATGCTATGGAT 57.481 29.630 22.19 13.90 42.53 3.41
67 68 9.778993 GTTATTATAAACAGCATGCTATGGATG 57.221 33.333 22.19 10.52 42.53 3.51
68 69 4.778534 ATAAACAGCATGCTATGGATGC 57.221 40.909 22.19 14.61 45.56 3.91
89 90 2.716814 CATCCATGGAGGCTCTTGC 58.283 57.895 21.33 0.00 37.29 4.01
90 91 0.183014 CATCCATGGAGGCTCTTGCT 59.817 55.000 21.33 0.00 39.59 3.91
91 92 0.473326 ATCCATGGAGGCTCTTGCTC 59.527 55.000 21.33 0.00 39.59 4.26
92 93 0.619832 TCCATGGAGGCTCTTGCTCT 60.620 55.000 11.44 0.00 39.59 4.09
93 94 1.126488 CCATGGAGGCTCTTGCTCTA 58.874 55.000 15.23 0.00 39.59 2.43
94 95 1.202627 CCATGGAGGCTCTTGCTCTAC 60.203 57.143 15.23 0.00 39.59 2.59
95 96 1.761784 CATGGAGGCTCTTGCTCTACT 59.238 52.381 15.23 0.00 39.59 2.57
96 97 1.944177 TGGAGGCTCTTGCTCTACTT 58.056 50.000 15.23 0.00 39.59 2.24
97 98 1.552337 TGGAGGCTCTTGCTCTACTTG 59.448 52.381 15.23 0.00 39.59 3.16
98 99 1.827969 GGAGGCTCTTGCTCTACTTGA 59.172 52.381 15.23 0.00 39.59 3.02
99 100 2.433970 GGAGGCTCTTGCTCTACTTGAT 59.566 50.000 15.23 0.00 39.59 2.57
100 101 3.456280 GAGGCTCTTGCTCTACTTGATG 58.544 50.000 7.40 0.00 39.59 3.07
101 102 2.170187 AGGCTCTTGCTCTACTTGATGG 59.830 50.000 0.00 0.00 39.59 3.51
102 103 1.939255 GCTCTTGCTCTACTTGATGGC 59.061 52.381 0.00 0.00 36.03 4.40
103 104 2.419851 GCTCTTGCTCTACTTGATGGCT 60.420 50.000 0.00 0.00 36.03 4.75
104 105 3.871485 CTCTTGCTCTACTTGATGGCTT 58.129 45.455 0.00 0.00 0.00 4.35
105 106 4.681781 GCTCTTGCTCTACTTGATGGCTTA 60.682 45.833 0.00 0.00 36.03 3.09
106 107 4.759782 TCTTGCTCTACTTGATGGCTTAC 58.240 43.478 0.00 0.00 0.00 2.34
107 108 3.165058 TGCTCTACTTGATGGCTTACG 57.835 47.619 0.00 0.00 0.00 3.18
108 109 1.861575 GCTCTACTTGATGGCTTACGC 59.138 52.381 0.00 0.00 0.00 4.42
119 120 3.436001 GCTTACGCCTAGCTGACAA 57.564 52.632 0.00 0.00 35.74 3.18
120 121 1.941325 GCTTACGCCTAGCTGACAAT 58.059 50.000 0.00 0.00 35.74 2.71
121 122 1.861575 GCTTACGCCTAGCTGACAATC 59.138 52.381 0.00 0.00 35.74 2.67
122 123 2.482142 GCTTACGCCTAGCTGACAATCT 60.482 50.000 0.00 0.00 35.74 2.40
123 124 3.376540 CTTACGCCTAGCTGACAATCTC 58.623 50.000 0.00 0.00 0.00 2.75
124 125 0.101399 ACGCCTAGCTGACAATCTCG 59.899 55.000 0.00 0.00 0.00 4.04
125 126 0.596083 CGCCTAGCTGACAATCTCGG 60.596 60.000 0.00 0.00 0.00 4.63
134 135 3.751621 CTGACAATCTCGGCATTTCAAC 58.248 45.455 0.00 0.00 0.00 3.18
135 136 3.411446 TGACAATCTCGGCATTTCAACT 58.589 40.909 0.00 0.00 0.00 3.16
136 137 3.436704 TGACAATCTCGGCATTTCAACTC 59.563 43.478 0.00 0.00 0.00 3.01
137 138 3.679389 ACAATCTCGGCATTTCAACTCT 58.321 40.909 0.00 0.00 0.00 3.24
138 139 3.438087 ACAATCTCGGCATTTCAACTCTG 59.562 43.478 0.00 0.00 0.00 3.35
139 140 2.099141 TCTCGGCATTTCAACTCTGG 57.901 50.000 0.00 0.00 0.00 3.86
140 141 1.347707 TCTCGGCATTTCAACTCTGGT 59.652 47.619 0.00 0.00 0.00 4.00
141 142 2.565391 TCTCGGCATTTCAACTCTGGTA 59.435 45.455 0.00 0.00 0.00 3.25
142 143 2.932614 CTCGGCATTTCAACTCTGGTAG 59.067 50.000 0.00 0.00 0.00 3.18
143 144 2.301870 TCGGCATTTCAACTCTGGTAGT 59.698 45.455 0.00 0.00 41.49 2.73
144 145 3.512329 TCGGCATTTCAACTCTGGTAGTA 59.488 43.478 0.00 0.00 37.50 1.82
145 146 3.865745 CGGCATTTCAACTCTGGTAGTAG 59.134 47.826 0.00 0.00 37.50 2.57
146 147 4.381612 CGGCATTTCAACTCTGGTAGTAGA 60.382 45.833 0.00 0.00 37.50 2.59
168 169 6.119144 GAGTCTGACTCACTAGAGATTGTC 57.881 45.833 28.18 0.00 44.45 3.18
169 170 4.947388 AGTCTGACTCACTAGAGATTGTCC 59.053 45.833 4.06 0.00 44.98 4.02
170 171 4.702612 GTCTGACTCACTAGAGATTGTCCA 59.297 45.833 0.00 0.00 44.98 4.02
171 172 5.184096 GTCTGACTCACTAGAGATTGTCCAA 59.816 44.000 0.00 0.00 44.98 3.53
172 173 5.417266 TCTGACTCACTAGAGATTGTCCAAG 59.583 44.000 0.00 0.00 44.98 3.61
173 174 4.081972 TGACTCACTAGAGATTGTCCAAGC 60.082 45.833 0.00 0.00 44.98 4.01
174 175 4.093011 ACTCACTAGAGATTGTCCAAGCT 58.907 43.478 0.00 0.00 44.98 3.74
175 176 5.265191 ACTCACTAGAGATTGTCCAAGCTA 58.735 41.667 0.00 0.00 44.98 3.32
176 177 5.896678 ACTCACTAGAGATTGTCCAAGCTAT 59.103 40.000 0.00 0.00 44.98 2.97
177 178 6.040391 ACTCACTAGAGATTGTCCAAGCTATC 59.960 42.308 0.00 0.00 44.98 2.08
178 179 5.303078 TCACTAGAGATTGTCCAAGCTATCC 59.697 44.000 0.00 0.00 37.15 2.59
179 180 5.304101 CACTAGAGATTGTCCAAGCTATCCT 59.696 44.000 0.00 0.00 37.15 3.24
180 181 5.902431 ACTAGAGATTGTCCAAGCTATCCTT 59.098 40.000 0.00 0.00 37.15 3.36
190 191 3.853355 AAGCTATCCTTGACCCATCAG 57.147 47.619 0.00 0.00 35.83 2.90
191 192 3.051940 AGCTATCCTTGACCCATCAGA 57.948 47.619 0.00 0.00 35.83 3.27
192 193 3.596101 AGCTATCCTTGACCCATCAGAT 58.404 45.455 0.00 0.00 35.83 2.90
193 194 3.979347 AGCTATCCTTGACCCATCAGATT 59.021 43.478 0.00 0.00 35.83 2.40
194 195 5.158141 AGCTATCCTTGACCCATCAGATTA 58.842 41.667 0.00 0.00 35.83 1.75
195 196 5.012561 AGCTATCCTTGACCCATCAGATTAC 59.987 44.000 0.00 0.00 35.83 1.89
196 197 4.713792 ATCCTTGACCCATCAGATTACC 57.286 45.455 0.00 0.00 35.83 2.85
197 198 2.434336 TCCTTGACCCATCAGATTACCG 59.566 50.000 0.00 0.00 35.83 4.02
198 199 2.170607 CCTTGACCCATCAGATTACCGT 59.829 50.000 0.00 0.00 35.83 4.83
199 200 2.979814 TGACCCATCAGATTACCGTG 57.020 50.000 0.00 0.00 0.00 4.94
200 201 1.134521 TGACCCATCAGATTACCGTGC 60.135 52.381 0.00 0.00 0.00 5.34
201 202 1.139058 GACCCATCAGATTACCGTGCT 59.861 52.381 0.00 0.00 0.00 4.40
202 203 1.559682 ACCCATCAGATTACCGTGCTT 59.440 47.619 0.00 0.00 0.00 3.91
203 204 2.213499 CCCATCAGATTACCGTGCTTC 58.787 52.381 0.00 0.00 0.00 3.86
204 205 2.419990 CCCATCAGATTACCGTGCTTCA 60.420 50.000 0.00 0.00 0.00 3.02
205 206 2.868583 CCATCAGATTACCGTGCTTCAG 59.131 50.000 0.00 0.00 0.00 3.02
206 207 2.010145 TCAGATTACCGTGCTTCAGC 57.990 50.000 0.00 0.00 42.50 4.26
207 208 0.647410 CAGATTACCGTGCTTCAGCG 59.353 55.000 0.00 0.00 45.83 5.18
214 215 4.389576 GTGCTTCAGCGGCGGTTG 62.390 66.667 9.73 5.47 45.83 3.77
215 216 4.927782 TGCTTCAGCGGCGGTTGT 62.928 61.111 9.73 0.00 45.83 3.32
216 217 3.660111 GCTTCAGCGGCGGTTGTT 61.660 61.111 9.73 0.00 0.00 2.83
217 218 2.322081 GCTTCAGCGGCGGTTGTTA 61.322 57.895 9.73 0.00 0.00 2.41
218 219 1.495951 CTTCAGCGGCGGTTGTTAC 59.504 57.895 9.73 0.00 0.00 2.50
219 220 0.949105 CTTCAGCGGCGGTTGTTACT 60.949 55.000 9.73 0.00 0.00 2.24
220 221 1.225376 TTCAGCGGCGGTTGTTACTG 61.225 55.000 9.73 5.39 0.00 2.74
221 222 1.666553 CAGCGGCGGTTGTTACTGA 60.667 57.895 9.73 0.00 31.98 3.41
222 223 1.019278 CAGCGGCGGTTGTTACTGAT 61.019 55.000 9.73 0.00 31.98 2.90
223 224 1.019278 AGCGGCGGTTGTTACTGATG 61.019 55.000 5.44 0.00 31.98 3.07
224 225 1.017177 GCGGCGGTTGTTACTGATGA 61.017 55.000 9.78 0.00 31.98 2.92
225 226 0.719465 CGGCGGTTGTTACTGATGAC 59.281 55.000 0.00 0.00 31.98 3.06
226 227 1.671850 CGGCGGTTGTTACTGATGACT 60.672 52.381 0.00 0.00 31.98 3.41
227 228 1.732259 GGCGGTTGTTACTGATGACTG 59.268 52.381 0.00 0.00 31.98 3.51
228 229 2.413837 GCGGTTGTTACTGATGACTGT 58.586 47.619 0.00 0.00 31.98 3.55
229 230 2.412089 GCGGTTGTTACTGATGACTGTC 59.588 50.000 0.00 0.00 31.98 3.51
230 231 3.649073 CGGTTGTTACTGATGACTGTCA 58.351 45.455 13.60 13.60 31.98 3.58
231 232 4.055360 CGGTTGTTACTGATGACTGTCAA 58.945 43.478 15.31 0.00 31.98 3.18
232 233 4.509970 CGGTTGTTACTGATGACTGTCAAA 59.490 41.667 15.31 5.53 31.98 2.69
233 234 5.007234 CGGTTGTTACTGATGACTGTCAAAA 59.993 40.000 15.31 5.16 31.98 2.44
234 235 6.430451 GGTTGTTACTGATGACTGTCAAAAG 58.570 40.000 15.31 16.30 0.00 2.27
235 236 6.038271 GGTTGTTACTGATGACTGTCAAAAGT 59.962 38.462 23.60 23.60 32.89 2.66
236 237 7.415206 GGTTGTTACTGATGACTGTCAAAAGTT 60.415 37.037 24.64 7.20 31.37 2.66
237 238 8.609176 GTTGTTACTGATGACTGTCAAAAGTTA 58.391 33.333 24.64 17.19 31.37 2.24
238 239 8.902540 TGTTACTGATGACTGTCAAAAGTTAT 57.097 30.769 24.64 5.92 31.37 1.89
239 240 9.337396 TGTTACTGATGACTGTCAAAAGTTATT 57.663 29.630 24.64 5.27 31.37 1.40
240 241 9.599322 GTTACTGATGACTGTCAAAAGTTATTG 57.401 33.333 24.64 8.86 31.37 1.90
241 242 9.554395 TTACTGATGACTGTCAAAAGTTATTGA 57.446 29.630 24.64 10.82 36.99 2.57
250 251 4.768145 TCAAAAGTTATTGACTGCGTTCG 58.232 39.130 0.00 0.00 39.00 3.95
251 252 3.806316 AAAGTTATTGACTGCGTTCGG 57.194 42.857 0.00 0.00 39.00 4.30
252 253 1.076332 AGTTATTGACTGCGTTCGGC 58.924 50.000 0.00 0.00 37.17 5.54
253 254 7.973522 CAAAAGTTATTGACTGCGTTCGGCA 62.974 44.000 0.00 0.00 40.07 5.69
269 270 4.454948 CAGGGCGACTGTTGTTCA 57.545 55.556 0.00 0.00 42.42 3.18
270 271 2.932663 CAGGGCGACTGTTGTTCAT 58.067 52.632 0.00 0.00 42.42 2.57
271 272 1.238439 CAGGGCGACTGTTGTTCATT 58.762 50.000 0.00 0.00 42.42 2.57
272 273 1.069022 CAGGGCGACTGTTGTTCATTG 60.069 52.381 0.00 0.00 42.42 2.82
273 274 0.951558 GGGCGACTGTTGTTCATTGT 59.048 50.000 0.00 0.00 0.00 2.71
274 275 1.334960 GGGCGACTGTTGTTCATTGTG 60.335 52.381 0.00 0.00 0.00 3.33
275 276 1.398595 GCGACTGTTGTTCATTGTGC 58.601 50.000 0.00 0.00 0.00 4.57
276 277 1.002468 GCGACTGTTGTTCATTGTGCT 60.002 47.619 0.00 0.00 0.00 4.40
277 278 2.908634 CGACTGTTGTTCATTGTGCTC 58.091 47.619 0.00 0.00 0.00 4.26
278 279 2.660094 CGACTGTTGTTCATTGTGCTCG 60.660 50.000 0.00 0.00 0.00 5.03
279 280 1.603802 ACTGTTGTTCATTGTGCTCGG 59.396 47.619 0.00 0.00 0.00 4.63
280 281 0.950836 TGTTGTTCATTGTGCTCGGG 59.049 50.000 0.00 0.00 0.00 5.14
281 282 1.234821 GTTGTTCATTGTGCTCGGGA 58.765 50.000 0.00 0.00 0.00 5.14
282 283 1.606668 GTTGTTCATTGTGCTCGGGAA 59.393 47.619 0.00 0.00 0.00 3.97
283 284 1.522668 TGTTCATTGTGCTCGGGAAG 58.477 50.000 0.00 0.00 0.00 3.46
284 285 0.804989 GTTCATTGTGCTCGGGAAGG 59.195 55.000 0.00 0.00 0.00 3.46
285 286 0.400213 TTCATTGTGCTCGGGAAGGT 59.600 50.000 0.00 0.00 0.00 3.50
286 287 1.271856 TCATTGTGCTCGGGAAGGTA 58.728 50.000 0.00 0.00 0.00 3.08
287 288 1.626321 TCATTGTGCTCGGGAAGGTAA 59.374 47.619 0.00 0.00 0.00 2.85
288 289 2.238646 TCATTGTGCTCGGGAAGGTAAT 59.761 45.455 0.00 0.00 0.00 1.89
289 290 2.107950 TTGTGCTCGGGAAGGTAATG 57.892 50.000 0.00 0.00 0.00 1.90
290 291 0.392461 TGTGCTCGGGAAGGTAATGC 60.392 55.000 0.00 0.00 0.00 3.56
291 292 1.153449 TGCTCGGGAAGGTAATGCG 60.153 57.895 0.00 0.00 0.00 4.73
292 293 1.887707 GCTCGGGAAGGTAATGCGG 60.888 63.158 0.00 0.00 0.00 5.69
293 294 1.887707 CTCGGGAAGGTAATGCGGC 60.888 63.158 0.00 0.00 0.00 6.53
294 295 2.124901 CGGGAAGGTAATGCGGCA 60.125 61.111 4.58 4.58 0.00 5.69
295 296 2.180204 CGGGAAGGTAATGCGGCAG 61.180 63.158 9.25 0.00 0.00 4.85
296 297 2.481471 GGGAAGGTAATGCGGCAGC 61.481 63.158 9.25 0.31 45.41 5.25
307 308 4.124351 CGGCAGCACATGGGCTTG 62.124 66.667 22.79 16.89 42.71 4.01
308 309 4.446413 GGCAGCACATGGGCTTGC 62.446 66.667 22.79 25.17 42.71 4.01
310 311 2.882876 CAGCACATGGGCTTGCTC 59.117 61.111 22.79 0.00 46.31 4.26
311 312 2.749044 AGCACATGGGCTTGCTCG 60.749 61.111 19.14 0.00 46.31 5.03
312 313 3.818787 GCACATGGGCTTGCTCGG 61.819 66.667 14.19 0.00 35.74 4.63
313 314 3.136123 CACATGGGCTTGCTCGGG 61.136 66.667 0.00 0.00 0.00 5.14
315 316 4.809496 CATGGGCTTGCTCGGGCT 62.809 66.667 9.62 0.00 39.59 5.19
316 317 3.089874 ATGGGCTTGCTCGGGCTA 61.090 61.111 9.62 0.00 39.59 3.93
317 318 3.112205 ATGGGCTTGCTCGGGCTAG 62.112 63.158 14.80 14.80 42.56 3.42
318 319 3.787001 GGGCTTGCTCGGGCTAGT 61.787 66.667 19.82 0.00 41.90 2.57
319 320 2.269241 GGCTTGCTCGGGCTAGTT 59.731 61.111 19.82 0.00 41.90 2.24
320 321 1.520666 GGCTTGCTCGGGCTAGTTA 59.479 57.895 19.82 0.00 41.90 2.24
321 322 0.810426 GGCTTGCTCGGGCTAGTTAC 60.810 60.000 19.82 7.43 41.90 2.50
322 323 0.108329 GCTTGCTCGGGCTAGTTACA 60.108 55.000 19.82 0.00 41.90 2.41
323 324 1.927895 CTTGCTCGGGCTAGTTACAG 58.072 55.000 9.62 0.00 36.75 2.74
324 325 1.476891 CTTGCTCGGGCTAGTTACAGA 59.523 52.381 9.62 0.00 36.75 3.41
325 326 1.103803 TGCTCGGGCTAGTTACAGAG 58.896 55.000 9.62 0.00 39.59 3.35
326 327 0.386113 GCTCGGGCTAGTTACAGAGG 59.614 60.000 0.00 0.00 35.22 3.69
327 328 2.022754 GCTCGGGCTAGTTACAGAGGA 61.023 57.143 0.00 0.00 35.22 3.71
328 329 2.376109 CTCGGGCTAGTTACAGAGGAA 58.624 52.381 0.00 0.00 0.00 3.36
329 330 2.758979 CTCGGGCTAGTTACAGAGGAAA 59.241 50.000 0.00 0.00 0.00 3.13
330 331 3.371965 TCGGGCTAGTTACAGAGGAAAT 58.628 45.455 0.00 0.00 0.00 2.17
331 332 3.773119 TCGGGCTAGTTACAGAGGAAATT 59.227 43.478 0.00 0.00 0.00 1.82
332 333 4.224370 TCGGGCTAGTTACAGAGGAAATTT 59.776 41.667 0.00 0.00 0.00 1.82
333 334 4.941873 CGGGCTAGTTACAGAGGAAATTTT 59.058 41.667 0.00 0.00 0.00 1.82
334 335 5.414765 CGGGCTAGTTACAGAGGAAATTTTT 59.585 40.000 0.00 0.00 0.00 1.94
335 336 6.403309 CGGGCTAGTTACAGAGGAAATTTTTC 60.403 42.308 0.00 0.00 36.46 2.29
336 337 6.659668 GGGCTAGTTACAGAGGAAATTTTTCT 59.340 38.462 3.28 0.00 37.35 2.52
337 338 7.362142 GGGCTAGTTACAGAGGAAATTTTTCTG 60.362 40.741 22.23 22.23 43.04 3.02
338 339 7.390718 GGCTAGTTACAGAGGAAATTTTTCTGA 59.609 37.037 27.05 15.18 40.54 3.27
339 340 8.784043 GCTAGTTACAGAGGAAATTTTTCTGAA 58.216 33.333 27.05 18.27 40.54 3.02
341 342 8.980481 AGTTACAGAGGAAATTTTTCTGAAGA 57.020 30.769 27.05 15.61 40.54 2.87
342 343 9.061435 AGTTACAGAGGAAATTTTTCTGAAGAG 57.939 33.333 27.05 11.01 40.54 2.85
343 344 8.841300 GTTACAGAGGAAATTTTTCTGAAGAGT 58.159 33.333 27.05 14.60 40.54 3.24
344 345 7.269477 ACAGAGGAAATTTTTCTGAAGAGTG 57.731 36.000 27.05 10.62 40.54 3.51
345 346 6.264067 ACAGAGGAAATTTTTCTGAAGAGTGG 59.736 38.462 27.05 9.54 40.54 4.00
346 347 5.242615 AGAGGAAATTTTTCTGAAGAGTGGC 59.757 40.000 0.00 0.00 37.35 5.01
347 348 4.022849 AGGAAATTTTTCTGAAGAGTGGCG 60.023 41.667 3.28 0.00 37.35 5.69
348 349 4.023193 GGAAATTTTTCTGAAGAGTGGCGA 60.023 41.667 3.28 0.00 37.35 5.54
349 350 4.756084 AATTTTTCTGAAGAGTGGCGAG 57.244 40.909 0.00 0.00 0.00 5.03
350 351 3.469008 TTTTTCTGAAGAGTGGCGAGA 57.531 42.857 0.00 0.00 0.00 4.04
351 352 3.685139 TTTTCTGAAGAGTGGCGAGAT 57.315 42.857 0.00 0.00 0.00 2.75
352 353 4.801330 TTTTCTGAAGAGTGGCGAGATA 57.199 40.909 0.00 0.00 0.00 1.98
353 354 4.801330 TTTCTGAAGAGTGGCGAGATAA 57.199 40.909 0.00 0.00 0.00 1.75
354 355 4.801330 TTCTGAAGAGTGGCGAGATAAA 57.199 40.909 0.00 0.00 0.00 1.40
355 356 4.111375 TCTGAAGAGTGGCGAGATAAAC 57.889 45.455 0.00 0.00 0.00 2.01
356 357 3.119101 TCTGAAGAGTGGCGAGATAAACC 60.119 47.826 0.00 0.00 0.00 3.27
357 358 2.832129 TGAAGAGTGGCGAGATAAACCT 59.168 45.455 0.00 0.00 0.00 3.50
358 359 3.260884 TGAAGAGTGGCGAGATAAACCTT 59.739 43.478 0.00 0.00 0.00 3.50
359 360 3.528597 AGAGTGGCGAGATAAACCTTC 57.471 47.619 0.00 0.00 0.00 3.46
360 361 3.100671 AGAGTGGCGAGATAAACCTTCT 58.899 45.455 0.00 0.00 0.00 2.85
361 362 3.118956 AGAGTGGCGAGATAAACCTTCTG 60.119 47.826 0.00 0.00 0.00 3.02
362 363 2.832129 AGTGGCGAGATAAACCTTCTGA 59.168 45.455 0.00 0.00 0.00 3.27
363 364 3.452627 AGTGGCGAGATAAACCTTCTGAT 59.547 43.478 0.00 0.00 0.00 2.90
364 365 4.080863 AGTGGCGAGATAAACCTTCTGATT 60.081 41.667 0.00 0.00 0.00 2.57
365 366 4.636206 GTGGCGAGATAAACCTTCTGATTT 59.364 41.667 0.00 0.00 0.00 2.17
366 367 4.876107 TGGCGAGATAAACCTTCTGATTTC 59.124 41.667 0.00 0.00 0.00 2.17
367 368 5.119694 GGCGAGATAAACCTTCTGATTTCT 58.880 41.667 0.00 0.00 0.00 2.52
368 369 5.586643 GGCGAGATAAACCTTCTGATTTCTT 59.413 40.000 0.00 0.00 0.00 2.52
369 370 6.457528 GGCGAGATAAACCTTCTGATTTCTTG 60.458 42.308 0.00 0.00 0.00 3.02
370 371 6.481984 CGAGATAAACCTTCTGATTTCTTGC 58.518 40.000 0.00 0.00 0.00 4.01
371 372 6.314896 CGAGATAAACCTTCTGATTTCTTGCT 59.685 38.462 0.00 0.00 0.00 3.91
372 373 7.465245 CGAGATAAACCTTCTGATTTCTTGCTC 60.465 40.741 0.00 0.00 0.00 4.26
373 374 6.601217 AGATAAACCTTCTGATTTCTTGCTCC 59.399 38.462 0.00 0.00 0.00 4.70
374 375 3.078891 ACCTTCTGATTTCTTGCTCCC 57.921 47.619 0.00 0.00 0.00 4.30
375 376 2.291217 ACCTTCTGATTTCTTGCTCCCC 60.291 50.000 0.00 0.00 0.00 4.81
376 377 2.025510 CCTTCTGATTTCTTGCTCCCCT 60.026 50.000 0.00 0.00 0.00 4.79
377 378 3.563043 CCTTCTGATTTCTTGCTCCCCTT 60.563 47.826 0.00 0.00 0.00 3.95
378 379 3.356529 TCTGATTTCTTGCTCCCCTTC 57.643 47.619 0.00 0.00 0.00 3.46
379 380 2.025887 TCTGATTTCTTGCTCCCCTTCC 60.026 50.000 0.00 0.00 0.00 3.46
380 381 1.995542 TGATTTCTTGCTCCCCTTCCT 59.004 47.619 0.00 0.00 0.00 3.36
381 382 2.379907 TGATTTCTTGCTCCCCTTCCTT 59.620 45.455 0.00 0.00 0.00 3.36
382 383 2.292828 TTTCTTGCTCCCCTTCCTTG 57.707 50.000 0.00 0.00 0.00 3.61
383 384 1.149101 TTCTTGCTCCCCTTCCTTGT 58.851 50.000 0.00 0.00 0.00 3.16
384 385 2.038863 TCTTGCTCCCCTTCCTTGTA 57.961 50.000 0.00 0.00 0.00 2.41
385 386 2.344592 TCTTGCTCCCCTTCCTTGTAA 58.655 47.619 0.00 0.00 0.00 2.41
386 387 2.039879 TCTTGCTCCCCTTCCTTGTAAC 59.960 50.000 0.00 0.00 0.00 2.50
387 388 1.742308 TGCTCCCCTTCCTTGTAACT 58.258 50.000 0.00 0.00 0.00 2.24
388 389 1.351017 TGCTCCCCTTCCTTGTAACTG 59.649 52.381 0.00 0.00 0.00 3.16
389 390 1.628846 GCTCCCCTTCCTTGTAACTGA 59.371 52.381 0.00 0.00 0.00 3.41
390 391 2.239907 GCTCCCCTTCCTTGTAACTGAT 59.760 50.000 0.00 0.00 0.00 2.90
391 392 3.454812 GCTCCCCTTCCTTGTAACTGATA 59.545 47.826 0.00 0.00 0.00 2.15
392 393 4.103311 GCTCCCCTTCCTTGTAACTGATAT 59.897 45.833 0.00 0.00 0.00 1.63
393 394 5.615289 CTCCCCTTCCTTGTAACTGATATG 58.385 45.833 0.00 0.00 0.00 1.78
394 395 5.285401 TCCCCTTCCTTGTAACTGATATGA 58.715 41.667 0.00 0.00 0.00 2.15
395 396 5.911178 TCCCCTTCCTTGTAACTGATATGAT 59.089 40.000 0.00 0.00 0.00 2.45
396 397 6.389869 TCCCCTTCCTTGTAACTGATATGATT 59.610 38.462 0.00 0.00 0.00 2.57
397 398 7.570982 TCCCCTTCCTTGTAACTGATATGATTA 59.429 37.037 0.00 0.00 0.00 1.75
398 399 8.386264 CCCCTTCCTTGTAACTGATATGATTAT 58.614 37.037 0.00 0.00 0.00 1.28
399 400 9.799106 CCCTTCCTTGTAACTGATATGATTATT 57.201 33.333 0.00 0.00 0.00 1.40
423 424 8.825667 TTGTTTAATAAAGGTTGCCAAATCTC 57.174 30.769 0.00 0.00 0.00 2.75
424 425 7.957002 TGTTTAATAAAGGTTGCCAAATCTCA 58.043 30.769 0.00 0.00 0.00 3.27
425 426 8.424918 TGTTTAATAAAGGTTGCCAAATCTCAA 58.575 29.630 0.00 0.00 0.00 3.02
426 427 9.267084 GTTTAATAAAGGTTGCCAAATCTCAAA 57.733 29.630 0.00 0.00 0.00 2.69
427 428 9.838339 TTTAATAAAGGTTGCCAAATCTCAAAA 57.162 25.926 0.00 0.00 0.00 2.44
428 429 9.838339 TTAATAAAGGTTGCCAAATCTCAAAAA 57.162 25.926 0.00 0.00 0.00 1.94
455 456 2.469516 GCTAACCATGTTCCGCCCG 61.470 63.158 0.00 0.00 0.00 6.13
460 461 3.814268 CATGTTCCGCCCGGCTTG 61.814 66.667 8.05 0.00 34.68 4.01
469 470 1.079888 GCCCGGCTTGGTGAATTTG 60.080 57.895 0.71 0.00 35.15 2.32
474 475 2.495669 CCGGCTTGGTGAATTTGGTAAT 59.504 45.455 0.00 0.00 0.00 1.89
475 476 3.510719 CGGCTTGGTGAATTTGGTAATG 58.489 45.455 0.00 0.00 0.00 1.90
494 495 7.604545 TGGTAATGAACGATTGTGATAACTCAA 59.395 33.333 0.00 0.00 34.73 3.02
498 499 6.841119 TGAACGATTGTGATAACTCAATTGG 58.159 36.000 15.43 0.00 41.67 3.16
570 572 4.504461 ACGCTTACTTGAATTCGCTATCTG 59.496 41.667 0.04 0.00 0.00 2.90
573 575 5.751028 GCTTACTTGAATTCGCTATCTGAGT 59.249 40.000 0.04 0.00 0.00 3.41
621 623 4.932146 ACGGAACAAATGTTTTTCTCAGG 58.068 39.130 0.00 0.00 38.56 3.86
624 626 4.507756 GGAACAAATGTTTTTCTCAGGCAC 59.492 41.667 0.00 0.00 38.56 5.01
651 653 5.695816 TGCACTGAAGAAACAAAAATATGCC 59.304 36.000 0.00 0.00 0.00 4.40
722 727 0.593128 AGCACGCAGAATTTGACCAC 59.407 50.000 0.00 0.00 0.00 4.16
723 728 0.310543 GCACGCAGAATTTGACCACA 59.689 50.000 0.00 0.00 0.00 4.17
724 729 1.664016 GCACGCAGAATTTGACCACAG 60.664 52.381 0.00 0.00 0.00 3.66
726 731 0.877071 CGCAGAATTTGACCACAGCT 59.123 50.000 0.00 0.00 0.00 4.24
738 750 0.469892 CCACAGCTTTTCCCTTGGGT 60.470 55.000 5.51 0.00 0.00 4.51
813 853 1.997874 GGTGGAGATGGAGGGCTGT 60.998 63.158 0.00 0.00 0.00 4.40
884 924 0.035439 TTCCTCTCCGCCAACCATTC 60.035 55.000 0.00 0.00 0.00 2.67
885 925 1.198094 TCCTCTCCGCCAACCATTCA 61.198 55.000 0.00 0.00 0.00 2.57
919 959 0.537188 TCCACCTCTCATTCTTCCGC 59.463 55.000 0.00 0.00 0.00 5.54
981 1021 2.034607 CTAGGTGACCGAGCTAGGC 58.965 63.158 13.48 6.57 45.50 3.93
1066 1106 2.047061 ACCTGCAGGACAAGTACAAGA 58.953 47.619 39.19 0.00 38.94 3.02
1132 1172 8.401709 TGTAAGTTTATTCATTCGCATTGCATA 58.598 29.630 9.69 0.00 0.00 3.14
1133 1173 9.232082 GTAAGTTTATTCATTCGCATTGCATAA 57.768 29.630 9.69 2.68 0.00 1.90
1134 1174 8.876275 AAGTTTATTCATTCGCATTGCATAAT 57.124 26.923 9.69 5.02 0.00 1.28
1135 1175 8.876275 AGTTTATTCATTCGCATTGCATAATT 57.124 26.923 9.69 0.00 0.00 1.40
1136 1176 8.757789 AGTTTATTCATTCGCATTGCATAATTG 58.242 29.630 9.69 1.19 0.00 2.32
1178 1218 3.688235 TCAACTCATGGTGAATGCATGA 58.312 40.909 0.00 0.00 36.11 3.07
1599 1639 3.379445 TCCTTCTCCCACGACGGC 61.379 66.667 0.00 0.00 0.00 5.68
1600 1640 4.452733 CCTTCTCCCACGACGGCC 62.453 72.222 0.00 0.00 0.00 6.13
1601 1641 4.796231 CTTCTCCCACGACGGCCG 62.796 72.222 26.86 26.86 45.44 6.13
1821 1861 1.077858 GGAGGTCGACGACTACCCT 60.078 63.158 25.87 15.54 36.34 4.34
1858 1898 2.279784 GCTGGCTCGAGGAATCGG 60.280 66.667 15.58 0.00 0.00 4.18
1861 1901 3.541713 GGCTCGAGGAATCGGCCT 61.542 66.667 15.58 0.00 42.20 5.19
2007 2047 6.183360 GCCAGCTTTCCTTGCACTATTAATTA 60.183 38.462 0.00 0.00 32.68 1.40
2008 2048 7.630513 GCCAGCTTTCCTTGCACTATTAATTAA 60.631 37.037 0.00 0.00 32.68 1.40
2009 2049 8.416329 CCAGCTTTCCTTGCACTATTAATTAAT 58.584 33.333 14.86 14.86 0.00 1.40
2010 2050 9.807649 CAGCTTTCCTTGCACTATTAATTAATT 57.192 29.630 15.64 5.89 0.00 1.40
2033 2073 9.520204 AATTTTAGTTGCCTTATTCATTCATCG 57.480 29.630 0.00 0.00 0.00 3.84
2050 2090 6.513806 TTCATCGTTCATCCATCATTTTGT 57.486 33.333 0.00 0.00 0.00 2.83
2055 2095 4.325204 CGTTCATCCATCATTTTGTTGCTG 59.675 41.667 0.00 0.00 0.00 4.41
2056 2096 5.472148 GTTCATCCATCATTTTGTTGCTGA 58.528 37.500 0.00 0.00 0.00 4.26
2057 2097 5.725325 TCATCCATCATTTTGTTGCTGAA 57.275 34.783 0.00 0.00 0.00 3.02
2058 2098 6.099159 TCATCCATCATTTTGTTGCTGAAA 57.901 33.333 0.00 0.00 0.00 2.69
2069 2109 7.754069 TTTTGTTGCTGAAAGAAGTGTATTG 57.246 32.000 0.00 0.00 34.07 1.90
2099 2139 5.007682 TGTTTTGCTTACTAGATTCCACCC 58.992 41.667 0.00 0.00 0.00 4.61
2100 2140 3.536956 TTGCTTACTAGATTCCACCCG 57.463 47.619 0.00 0.00 0.00 5.28
2101 2141 1.138266 TGCTTACTAGATTCCACCCGC 59.862 52.381 0.00 0.00 0.00 6.13
2147 2187 6.272822 ACCTCAATCACCTCAAAATTTAGC 57.727 37.500 0.00 0.00 0.00 3.09
2255 2299 4.681025 CCCATGTCTTTTTGTTTGATGTCG 59.319 41.667 0.00 0.00 0.00 4.35
2256 2300 5.507149 CCCATGTCTTTTTGTTTGATGTCGA 60.507 40.000 0.00 0.00 0.00 4.20
2257 2301 6.151691 CCATGTCTTTTTGTTTGATGTCGAT 58.848 36.000 0.00 0.00 0.00 3.59
2258 2302 6.306356 CCATGTCTTTTTGTTTGATGTCGATC 59.694 38.462 0.00 0.00 0.00 3.69
2260 2304 7.026631 TGTCTTTTTGTTTGATGTCGATCTT 57.973 32.000 0.00 0.00 0.00 2.40
2261 2305 6.912051 TGTCTTTTTGTTTGATGTCGATCTTG 59.088 34.615 0.00 0.00 0.00 3.02
2262 2306 7.132213 GTCTTTTTGTTTGATGTCGATCTTGA 58.868 34.615 0.00 0.00 0.00 3.02
2332 4033 4.957954 AGATTTGAAGGATGGCATTTGCTA 59.042 37.500 0.00 0.00 41.70 3.49
2343 4044 4.314121 TGGCATTTGCTAACATGGTTTTC 58.686 39.130 2.12 0.00 41.70 2.29
2372 4075 9.442047 AACAACAAACACATCTTTAATGGAAAA 57.558 25.926 0.00 0.00 0.00 2.29
2439 4142 7.554959 TTAATTCACAAGAGAACTACTCCCT 57.445 36.000 0.00 0.00 45.96 4.20
2444 4147 2.423446 AGAGAACTACTCCCTCCGTC 57.577 55.000 0.00 0.00 45.96 4.79
2445 4148 1.064537 AGAGAACTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 45.96 4.79
2446 4149 0.033306 AGAACTACTCCCTCCGTCCC 60.033 60.000 0.00 0.00 0.00 4.46
2447 4150 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
2448 4151 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2524 4227 7.487509 CGAGATACCATGCAAATCACTATCTAG 59.512 40.741 0.00 0.00 0.00 2.43
2725 4430 8.786826 AACTAAATCCACGACAAGAATTATGA 57.213 30.769 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.482721 GCCCATACAATCCCGAATTACG 59.517 50.000 0.00 0.00 42.18 3.18
1 2 2.482721 CGCCCATACAATCCCGAATTAC 59.517 50.000 0.00 0.00 0.00 1.89
2 3 2.773487 CGCCCATACAATCCCGAATTA 58.227 47.619 0.00 0.00 0.00 1.40
3 4 1.604604 CGCCCATACAATCCCGAATT 58.395 50.000 0.00 0.00 0.00 2.17
4 5 0.889186 GCGCCCATACAATCCCGAAT 60.889 55.000 0.00 0.00 0.00 3.34
5 6 1.525077 GCGCCCATACAATCCCGAA 60.525 57.895 0.00 0.00 0.00 4.30
6 7 1.978455 AAGCGCCCATACAATCCCGA 61.978 55.000 2.29 0.00 0.00 5.14
7 8 1.101049 AAAGCGCCCATACAATCCCG 61.101 55.000 2.29 0.00 0.00 5.14
8 9 1.111277 AAAAGCGCCCATACAATCCC 58.889 50.000 2.29 0.00 0.00 3.85
9 10 4.298332 CAATAAAAGCGCCCATACAATCC 58.702 43.478 2.29 0.00 0.00 3.01
10 11 3.735746 GCAATAAAAGCGCCCATACAATC 59.264 43.478 2.29 0.00 0.00 2.67
11 12 3.131933 TGCAATAAAAGCGCCCATACAAT 59.868 39.130 2.29 0.00 33.85 2.71
12 13 2.493675 TGCAATAAAAGCGCCCATACAA 59.506 40.909 2.29 0.00 33.85 2.41
13 14 2.095461 TGCAATAAAAGCGCCCATACA 58.905 42.857 2.29 0.00 33.85 2.29
14 15 2.543653 CCTGCAATAAAAGCGCCCATAC 60.544 50.000 2.29 0.00 33.85 2.39
15 16 1.680735 CCTGCAATAAAAGCGCCCATA 59.319 47.619 2.29 0.00 33.85 2.74
16 17 0.461135 CCTGCAATAAAAGCGCCCAT 59.539 50.000 2.29 0.00 33.85 4.00
17 18 0.610509 TCCTGCAATAAAAGCGCCCA 60.611 50.000 2.29 0.00 33.85 5.36
18 19 0.746659 ATCCTGCAATAAAAGCGCCC 59.253 50.000 2.29 0.00 33.85 6.13
19 20 1.134946 ACATCCTGCAATAAAAGCGCC 59.865 47.619 2.29 0.00 33.85 6.53
20 21 2.566952 ACATCCTGCAATAAAAGCGC 57.433 45.000 0.00 0.00 33.85 5.92
21 22 3.836949 ACAACATCCTGCAATAAAAGCG 58.163 40.909 0.00 0.00 33.85 4.68
22 23 7.832503 AATAACAACATCCTGCAATAAAAGC 57.167 32.000 0.00 0.00 0.00 3.51
29 30 7.973388 GCTGTTTATAATAACAACATCCTGCAA 59.027 33.333 0.00 0.00 37.55 4.08
30 31 7.121907 TGCTGTTTATAATAACAACATCCTGCA 59.878 33.333 0.00 0.00 37.55 4.41
31 32 7.479980 TGCTGTTTATAATAACAACATCCTGC 58.520 34.615 0.00 0.00 37.55 4.85
32 33 9.454585 CATGCTGTTTATAATAACAACATCCTG 57.545 33.333 4.07 0.00 40.79 3.86
33 34 8.137437 GCATGCTGTTTATAATAACAACATCCT 58.863 33.333 11.37 0.00 40.79 3.24
34 35 8.137437 AGCATGCTGTTTATAATAACAACATCC 58.863 33.333 21.98 0.00 40.79 3.51
37 38 9.949174 CATAGCATGCTGTTTATAATAACAACA 57.051 29.630 30.42 3.73 38.17 3.33
38 39 9.398170 CCATAGCATGCTGTTTATAATAACAAC 57.602 33.333 30.42 0.00 37.55 3.32
39 40 9.348476 TCCATAGCATGCTGTTTATAATAACAA 57.652 29.630 30.42 4.88 37.55 2.83
40 41 8.916628 TCCATAGCATGCTGTTTATAATAACA 57.083 30.769 30.42 5.37 36.63 2.41
41 42 9.778993 CATCCATAGCATGCTGTTTATAATAAC 57.221 33.333 30.42 0.00 0.00 1.89
42 43 8.461222 GCATCCATAGCATGCTGTTTATAATAA 58.539 33.333 30.42 6.18 42.95 1.40
43 44 7.611079 TGCATCCATAGCATGCTGTTTATAATA 59.389 33.333 30.42 7.00 45.90 0.98
44 45 6.434965 TGCATCCATAGCATGCTGTTTATAAT 59.565 34.615 30.42 10.82 45.90 1.28
45 46 5.769162 TGCATCCATAGCATGCTGTTTATAA 59.231 36.000 30.42 8.65 45.90 0.98
46 47 5.181811 GTGCATCCATAGCATGCTGTTTATA 59.818 40.000 30.42 9.47 45.90 0.98
47 48 4.022589 GTGCATCCATAGCATGCTGTTTAT 60.023 41.667 30.42 15.41 45.90 1.40
48 49 3.316029 GTGCATCCATAGCATGCTGTTTA 59.684 43.478 30.42 13.76 45.90 2.01
49 50 2.100252 GTGCATCCATAGCATGCTGTTT 59.900 45.455 30.42 11.95 45.90 2.83
50 51 1.679680 GTGCATCCATAGCATGCTGTT 59.320 47.619 30.42 14.61 45.90 3.16
51 52 1.315690 GTGCATCCATAGCATGCTGT 58.684 50.000 30.42 21.59 45.90 4.40
52 53 0.596577 GGTGCATCCATAGCATGCTG 59.403 55.000 30.42 15.17 45.90 4.41
53 54 0.184211 TGGTGCATCCATAGCATGCT 59.816 50.000 25.99 25.99 45.90 3.79
54 55 2.723231 TGGTGCATCCATAGCATGC 58.277 52.632 10.51 10.51 44.79 4.06
69 70 3.483315 GCAAGAGCCTCCATGGATGGT 62.483 57.143 20.04 20.04 41.07 3.55
70 71 0.822532 GCAAGAGCCTCCATGGATGG 60.823 60.000 16.63 18.88 41.41 3.51
71 72 0.183014 AGCAAGAGCCTCCATGGATG 59.817 55.000 16.63 14.26 43.56 3.51
72 73 0.473326 GAGCAAGAGCCTCCATGGAT 59.527 55.000 16.63 0.00 43.56 3.41
73 74 0.619832 AGAGCAAGAGCCTCCATGGA 60.620 55.000 15.27 15.27 43.56 3.41
74 75 1.126488 TAGAGCAAGAGCCTCCATGG 58.874 55.000 4.97 4.97 43.56 3.66
75 76 1.761784 AGTAGAGCAAGAGCCTCCATG 59.238 52.381 0.00 0.00 43.56 3.66
76 77 2.170187 CAAGTAGAGCAAGAGCCTCCAT 59.830 50.000 0.00 0.00 43.56 3.41
77 78 1.552337 CAAGTAGAGCAAGAGCCTCCA 59.448 52.381 0.00 0.00 43.56 3.86
78 79 1.827969 TCAAGTAGAGCAAGAGCCTCC 59.172 52.381 0.00 0.00 43.56 4.30
79 80 3.456280 CATCAAGTAGAGCAAGAGCCTC 58.544 50.000 0.00 0.00 43.56 4.70
80 81 2.170187 CCATCAAGTAGAGCAAGAGCCT 59.830 50.000 0.00 0.00 43.56 4.58
81 82 2.559440 CCATCAAGTAGAGCAAGAGCC 58.441 52.381 0.00 0.00 43.56 4.70
82 83 1.939255 GCCATCAAGTAGAGCAAGAGC 59.061 52.381 0.00 0.00 42.56 4.09
83 84 3.540314 AGCCATCAAGTAGAGCAAGAG 57.460 47.619 0.00 0.00 0.00 2.85
84 85 3.988976 AAGCCATCAAGTAGAGCAAGA 57.011 42.857 0.00 0.00 0.00 3.02
85 86 3.553511 CGTAAGCCATCAAGTAGAGCAAG 59.446 47.826 0.00 0.00 0.00 4.01
86 87 3.521560 CGTAAGCCATCAAGTAGAGCAA 58.478 45.455 0.00 0.00 0.00 3.91
87 88 3.165058 CGTAAGCCATCAAGTAGAGCA 57.835 47.619 0.00 0.00 0.00 4.26
102 103 3.376540 GAGATTGTCAGCTAGGCGTAAG 58.623 50.000 0.00 0.00 43.44 2.34
103 104 2.223502 CGAGATTGTCAGCTAGGCGTAA 60.224 50.000 0.00 0.00 0.00 3.18
104 105 1.333931 CGAGATTGTCAGCTAGGCGTA 59.666 52.381 0.00 0.00 0.00 4.42
105 106 0.101399 CGAGATTGTCAGCTAGGCGT 59.899 55.000 0.00 0.00 0.00 5.68
106 107 0.596083 CCGAGATTGTCAGCTAGGCG 60.596 60.000 0.00 0.00 0.00 5.52
107 108 0.878086 GCCGAGATTGTCAGCTAGGC 60.878 60.000 11.29 11.29 43.77 3.93
108 109 0.461548 TGCCGAGATTGTCAGCTAGG 59.538 55.000 0.00 0.00 0.00 3.02
109 110 2.522836 ATGCCGAGATTGTCAGCTAG 57.477 50.000 0.00 0.00 0.00 3.42
110 111 2.988010 AATGCCGAGATTGTCAGCTA 57.012 45.000 0.00 0.00 0.00 3.32
111 112 2.012673 GAAATGCCGAGATTGTCAGCT 58.987 47.619 0.00 0.00 0.00 4.24
112 113 1.739466 TGAAATGCCGAGATTGTCAGC 59.261 47.619 0.00 0.00 0.00 4.26
113 114 3.438087 AGTTGAAATGCCGAGATTGTCAG 59.562 43.478 0.00 0.00 0.00 3.51
114 115 3.411446 AGTTGAAATGCCGAGATTGTCA 58.589 40.909 0.00 0.00 0.00 3.58
115 116 3.686726 AGAGTTGAAATGCCGAGATTGTC 59.313 43.478 0.00 0.00 0.00 3.18
116 117 3.438087 CAGAGTTGAAATGCCGAGATTGT 59.562 43.478 0.00 0.00 0.00 2.71
117 118 3.181503 CCAGAGTTGAAATGCCGAGATTG 60.182 47.826 0.00 0.00 0.00 2.67
118 119 3.012518 CCAGAGTTGAAATGCCGAGATT 58.987 45.455 0.00 0.00 0.00 2.40
119 120 2.026822 ACCAGAGTTGAAATGCCGAGAT 60.027 45.455 0.00 0.00 0.00 2.75
120 121 1.347707 ACCAGAGTTGAAATGCCGAGA 59.652 47.619 0.00 0.00 0.00 4.04
121 122 1.813513 ACCAGAGTTGAAATGCCGAG 58.186 50.000 0.00 0.00 0.00 4.63
122 123 2.301870 ACTACCAGAGTTGAAATGCCGA 59.698 45.455 0.00 0.00 33.13 5.54
123 124 2.699954 ACTACCAGAGTTGAAATGCCG 58.300 47.619 0.00 0.00 33.13 5.69
124 125 5.086104 TCTACTACCAGAGTTGAAATGCC 57.914 43.478 0.00 0.00 37.04 4.40
134 135 4.873827 GTGAGTCAGACTCTACTACCAGAG 59.126 50.000 27.42 0.00 45.27 3.35
135 136 4.532916 AGTGAGTCAGACTCTACTACCAGA 59.467 45.833 27.42 4.92 45.27 3.86
136 137 4.839121 AGTGAGTCAGACTCTACTACCAG 58.161 47.826 27.42 0.00 45.27 4.00
137 138 4.912317 AGTGAGTCAGACTCTACTACCA 57.088 45.455 27.42 6.92 45.27 3.25
138 139 6.097270 TCTCTAGTGAGTCAGACTCTACTACC 59.903 46.154 27.42 10.99 45.27 3.18
139 140 7.104043 TCTCTAGTGAGTCAGACTCTACTAC 57.896 44.000 27.42 18.33 45.27 2.73
140 141 7.907841 ATCTCTAGTGAGTCAGACTCTACTA 57.092 40.000 27.42 26.28 45.27 1.82
141 142 6.808321 ATCTCTAGTGAGTCAGACTCTACT 57.192 41.667 27.42 26.51 45.27 2.57
142 143 6.821665 ACAATCTCTAGTGAGTCAGACTCTAC 59.178 42.308 27.42 22.33 45.27 2.59
143 144 6.953101 ACAATCTCTAGTGAGTCAGACTCTA 58.047 40.000 27.42 14.00 45.27 2.43
144 145 5.815581 ACAATCTCTAGTGAGTCAGACTCT 58.184 41.667 27.42 13.63 45.27 3.24
145 146 5.065988 GGACAATCTCTAGTGAGTCAGACTC 59.934 48.000 22.09 22.09 45.26 3.36
146 147 4.947388 GGACAATCTCTAGTGAGTCAGACT 59.053 45.833 1.46 1.46 40.98 3.24
147 148 4.702612 TGGACAATCTCTAGTGAGTCAGAC 59.297 45.833 13.19 0.00 40.98 3.51
148 149 4.923415 TGGACAATCTCTAGTGAGTCAGA 58.077 43.478 13.19 0.00 40.98 3.27
149 150 5.649557 CTTGGACAATCTCTAGTGAGTCAG 58.350 45.833 13.19 3.42 40.98 3.51
150 151 4.081972 GCTTGGACAATCTCTAGTGAGTCA 60.082 45.833 13.19 0.00 40.98 3.41
151 152 4.159506 AGCTTGGACAATCTCTAGTGAGTC 59.840 45.833 0.50 3.65 40.98 3.36
152 153 4.093011 AGCTTGGACAATCTCTAGTGAGT 58.907 43.478 0.50 0.00 40.98 3.41
153 154 4.734398 AGCTTGGACAATCTCTAGTGAG 57.266 45.455 0.50 0.00 41.51 3.51
154 155 5.303078 GGATAGCTTGGACAATCTCTAGTGA 59.697 44.000 0.00 0.00 0.00 3.41
155 156 5.304101 AGGATAGCTTGGACAATCTCTAGTG 59.696 44.000 0.00 0.00 0.00 2.74
156 157 5.463154 AGGATAGCTTGGACAATCTCTAGT 58.537 41.667 0.00 0.00 0.00 2.57
157 158 6.041409 TCAAGGATAGCTTGGACAATCTCTAG 59.959 42.308 0.00 0.00 33.05 2.43
158 159 5.899547 TCAAGGATAGCTTGGACAATCTCTA 59.100 40.000 0.00 0.00 33.05 2.43
159 160 4.718774 TCAAGGATAGCTTGGACAATCTCT 59.281 41.667 0.00 0.00 33.05 3.10
160 161 4.813697 GTCAAGGATAGCTTGGACAATCTC 59.186 45.833 0.00 0.00 33.05 2.75
161 162 4.384647 GGTCAAGGATAGCTTGGACAATCT 60.385 45.833 0.00 0.00 33.05 2.40
162 163 3.879892 GGTCAAGGATAGCTTGGACAATC 59.120 47.826 0.00 0.00 33.05 2.67
163 164 3.372025 GGGTCAAGGATAGCTTGGACAAT 60.372 47.826 0.00 0.00 33.05 2.71
164 165 2.026262 GGGTCAAGGATAGCTTGGACAA 60.026 50.000 0.00 0.00 33.05 3.18
165 166 1.559682 GGGTCAAGGATAGCTTGGACA 59.440 52.381 0.00 0.00 33.05 4.02
166 167 1.559682 TGGGTCAAGGATAGCTTGGAC 59.440 52.381 0.00 0.00 33.05 4.02
167 168 1.965414 TGGGTCAAGGATAGCTTGGA 58.035 50.000 0.00 0.00 33.05 3.53
168 169 2.173356 TGATGGGTCAAGGATAGCTTGG 59.827 50.000 0.00 0.00 33.05 3.61
169 170 3.135348 TCTGATGGGTCAAGGATAGCTTG 59.865 47.826 0.00 0.00 33.05 4.01
170 171 3.387962 TCTGATGGGTCAAGGATAGCTT 58.612 45.455 0.00 0.00 33.05 3.74
171 172 3.051940 TCTGATGGGTCAAGGATAGCT 57.948 47.619 0.00 0.00 33.05 3.32
172 173 4.363991 AATCTGATGGGTCAAGGATAGC 57.636 45.455 0.00 0.00 33.05 2.97
173 174 5.567623 CGGTAATCTGATGGGTCAAGGATAG 60.568 48.000 0.00 0.00 33.05 2.08
174 175 4.283467 CGGTAATCTGATGGGTCAAGGATA 59.717 45.833 0.00 0.00 33.05 2.59
175 176 3.071602 CGGTAATCTGATGGGTCAAGGAT 59.928 47.826 0.00 0.00 33.05 3.24
176 177 2.434336 CGGTAATCTGATGGGTCAAGGA 59.566 50.000 0.00 0.00 33.05 3.36
177 178 2.170607 ACGGTAATCTGATGGGTCAAGG 59.829 50.000 0.00 0.00 33.05 3.61
178 179 3.198068 CACGGTAATCTGATGGGTCAAG 58.802 50.000 0.00 0.00 33.05 3.02
179 180 2.679639 GCACGGTAATCTGATGGGTCAA 60.680 50.000 0.00 0.00 33.05 3.18
180 181 1.134521 GCACGGTAATCTGATGGGTCA 60.135 52.381 0.00 0.00 0.00 4.02
181 182 1.139058 AGCACGGTAATCTGATGGGTC 59.861 52.381 0.00 0.00 0.00 4.46
182 183 1.204146 AGCACGGTAATCTGATGGGT 58.796 50.000 0.00 0.00 0.00 4.51
183 184 2.213499 GAAGCACGGTAATCTGATGGG 58.787 52.381 0.00 0.00 0.00 4.00
184 185 2.868583 CTGAAGCACGGTAATCTGATGG 59.131 50.000 0.00 0.00 0.00 3.51
185 186 2.286294 GCTGAAGCACGGTAATCTGATG 59.714 50.000 0.00 0.00 41.59 3.07
186 187 2.555199 GCTGAAGCACGGTAATCTGAT 58.445 47.619 0.00 0.00 41.59 2.90
187 188 1.735700 CGCTGAAGCACGGTAATCTGA 60.736 52.381 2.79 0.00 42.21 3.27
188 189 0.647410 CGCTGAAGCACGGTAATCTG 59.353 55.000 2.79 0.00 42.21 2.90
189 190 0.460284 CCGCTGAAGCACGGTAATCT 60.460 55.000 2.79 0.00 44.46 2.40
190 191 2.006772 CCGCTGAAGCACGGTAATC 58.993 57.895 2.79 0.00 44.46 1.75
191 192 4.201951 CCGCTGAAGCACGGTAAT 57.798 55.556 2.79 0.00 44.46 1.89
197 198 4.389576 CAACCGCCGCTGAAGCAC 62.390 66.667 2.79 0.00 42.21 4.40
198 199 2.997952 TAACAACCGCCGCTGAAGCA 62.998 55.000 2.79 0.00 42.21 3.91
199 200 2.322081 TAACAACCGCCGCTGAAGC 61.322 57.895 0.00 0.00 37.78 3.86
200 201 0.949105 AGTAACAACCGCCGCTGAAG 60.949 55.000 0.00 0.00 0.00 3.02
201 202 1.070105 AGTAACAACCGCCGCTGAA 59.930 52.632 0.00 0.00 0.00 3.02
202 203 1.666553 CAGTAACAACCGCCGCTGA 60.667 57.895 0.00 0.00 0.00 4.26
203 204 1.019278 ATCAGTAACAACCGCCGCTG 61.019 55.000 0.00 0.00 0.00 5.18
204 205 1.019278 CATCAGTAACAACCGCCGCT 61.019 55.000 0.00 0.00 0.00 5.52
205 206 1.017177 TCATCAGTAACAACCGCCGC 61.017 55.000 0.00 0.00 0.00 6.53
206 207 0.719465 GTCATCAGTAACAACCGCCG 59.281 55.000 0.00 0.00 0.00 6.46
207 208 1.732259 CAGTCATCAGTAACAACCGCC 59.268 52.381 0.00 0.00 0.00 6.13
208 209 2.412089 GACAGTCATCAGTAACAACCGC 59.588 50.000 0.00 0.00 0.00 5.68
209 210 3.649073 TGACAGTCATCAGTAACAACCG 58.351 45.455 0.00 0.00 0.00 4.44
210 211 6.038271 ACTTTTGACAGTCATCAGTAACAACC 59.962 38.462 3.45 0.00 0.00 3.77
211 212 7.016361 ACTTTTGACAGTCATCAGTAACAAC 57.984 36.000 3.45 0.00 0.00 3.32
212 213 7.624360 AACTTTTGACAGTCATCAGTAACAA 57.376 32.000 13.27 0.00 0.00 2.83
213 214 8.902540 ATAACTTTTGACAGTCATCAGTAACA 57.097 30.769 13.27 5.35 0.00 2.41
214 215 9.599322 CAATAACTTTTGACAGTCATCAGTAAC 57.401 33.333 13.27 0.00 0.00 2.50
215 216 9.554395 TCAATAACTTTTGACAGTCATCAGTAA 57.446 29.630 13.27 0.00 30.82 2.24
228 229 4.319190 CCGAACGCAGTCAATAACTTTTGA 60.319 41.667 0.00 0.00 45.00 2.69
229 230 3.906008 CCGAACGCAGTCAATAACTTTTG 59.094 43.478 0.00 0.00 45.00 2.44
230 231 3.608474 GCCGAACGCAGTCAATAACTTTT 60.608 43.478 0.00 0.00 45.00 2.27
231 232 2.095919 GCCGAACGCAGTCAATAACTTT 60.096 45.455 0.00 0.00 45.00 2.66
232 233 1.463444 GCCGAACGCAGTCAATAACTT 59.537 47.619 0.00 0.00 45.00 2.66
233 234 1.076332 GCCGAACGCAGTCAATAACT 58.924 50.000 0.00 0.00 45.00 2.24
234 235 0.793861 TGCCGAACGCAGTCAATAAC 59.206 50.000 0.00 0.00 45.00 1.89
235 236 3.218844 TGCCGAACGCAGTCAATAA 57.781 47.368 0.00 0.00 45.00 1.40
236 237 4.999212 TGCCGAACGCAGTCAATA 57.001 50.000 0.00 0.00 45.00 1.90
246 247 4.681978 ACAGTCGCCCTGCCGAAC 62.682 66.667 2.29 0.00 45.68 3.95
247 248 3.936203 AACAGTCGCCCTGCCGAA 61.936 61.111 2.29 0.00 45.68 4.30
248 249 4.680237 CAACAGTCGCCCTGCCGA 62.680 66.667 2.29 0.00 45.68 5.54
249 250 4.988598 ACAACAGTCGCCCTGCCG 62.989 66.667 2.29 0.00 45.68 5.69
250 251 2.594592 AACAACAGTCGCCCTGCC 60.595 61.111 2.29 0.00 45.68 4.85
251 252 1.237285 ATGAACAACAGTCGCCCTGC 61.237 55.000 2.29 0.00 45.68 4.85
253 254 1.238439 CAATGAACAACAGTCGCCCT 58.762 50.000 0.00 0.00 0.00 5.19
254 255 0.951558 ACAATGAACAACAGTCGCCC 59.048 50.000 0.00 0.00 0.00 6.13
255 256 1.925946 GCACAATGAACAACAGTCGCC 60.926 52.381 0.00 0.00 0.00 5.54
256 257 1.002468 AGCACAATGAACAACAGTCGC 60.002 47.619 0.00 0.00 0.00 5.19
257 258 2.660094 CGAGCACAATGAACAACAGTCG 60.660 50.000 0.00 0.00 0.00 4.18
258 259 2.349817 CCGAGCACAATGAACAACAGTC 60.350 50.000 0.00 0.00 0.00 3.51
259 260 1.603802 CCGAGCACAATGAACAACAGT 59.396 47.619 0.00 0.00 0.00 3.55
260 261 1.069022 CCCGAGCACAATGAACAACAG 60.069 52.381 0.00 0.00 0.00 3.16
261 262 0.950836 CCCGAGCACAATGAACAACA 59.049 50.000 0.00 0.00 0.00 3.33
262 263 1.234821 TCCCGAGCACAATGAACAAC 58.765 50.000 0.00 0.00 0.00 3.32
263 264 1.879380 CTTCCCGAGCACAATGAACAA 59.121 47.619 0.00 0.00 0.00 2.83
264 265 1.522668 CTTCCCGAGCACAATGAACA 58.477 50.000 0.00 0.00 0.00 3.18
265 266 0.804989 CCTTCCCGAGCACAATGAAC 59.195 55.000 0.00 0.00 0.00 3.18
266 267 0.400213 ACCTTCCCGAGCACAATGAA 59.600 50.000 0.00 0.00 0.00 2.57
267 268 1.271856 TACCTTCCCGAGCACAATGA 58.728 50.000 0.00 0.00 0.00 2.57
268 269 2.107950 TTACCTTCCCGAGCACAATG 57.892 50.000 0.00 0.00 0.00 2.82
269 270 2.643551 CATTACCTTCCCGAGCACAAT 58.356 47.619 0.00 0.00 0.00 2.71
270 271 1.948611 GCATTACCTTCCCGAGCACAA 60.949 52.381 0.00 0.00 0.00 3.33
271 272 0.392461 GCATTACCTTCCCGAGCACA 60.392 55.000 0.00 0.00 0.00 4.57
272 273 1.429148 CGCATTACCTTCCCGAGCAC 61.429 60.000 0.00 0.00 0.00 4.40
273 274 1.153449 CGCATTACCTTCCCGAGCA 60.153 57.895 0.00 0.00 0.00 4.26
274 275 1.887707 CCGCATTACCTTCCCGAGC 60.888 63.158 0.00 0.00 0.00 5.03
275 276 1.887707 GCCGCATTACCTTCCCGAG 60.888 63.158 0.00 0.00 0.00 4.63
276 277 2.188469 GCCGCATTACCTTCCCGA 59.812 61.111 0.00 0.00 0.00 5.14
277 278 2.124901 TGCCGCATTACCTTCCCG 60.125 61.111 0.00 0.00 0.00 5.14
278 279 2.481471 GCTGCCGCATTACCTTCCC 61.481 63.158 0.00 0.00 35.78 3.97
279 280 1.748879 TGCTGCCGCATTACCTTCC 60.749 57.895 0.00 0.00 42.25 3.46
280 281 3.903783 TGCTGCCGCATTACCTTC 58.096 55.556 0.00 0.00 42.25 3.46
290 291 4.124351 CAAGCCCATGTGCTGCCG 62.124 66.667 2.56 0.00 41.80 5.69
291 292 4.446413 GCAAGCCCATGTGCTGCC 62.446 66.667 2.56 0.00 41.80 4.85
295 296 3.818787 CCGAGCAAGCCCATGTGC 61.819 66.667 0.00 0.00 41.22 4.57
296 297 3.136123 CCCGAGCAAGCCCATGTG 61.136 66.667 0.00 0.00 0.00 3.21
298 299 3.405093 TAGCCCGAGCAAGCCCATG 62.405 63.158 0.00 0.00 43.56 3.66
299 300 3.089874 TAGCCCGAGCAAGCCCAT 61.090 61.111 0.00 0.00 43.56 4.00
300 301 3.785859 CTAGCCCGAGCAAGCCCA 61.786 66.667 0.00 0.00 43.56 5.36
301 302 1.968050 TAACTAGCCCGAGCAAGCCC 61.968 60.000 0.00 0.00 43.56 5.19
302 303 0.810426 GTAACTAGCCCGAGCAAGCC 60.810 60.000 0.00 0.00 43.56 4.35
303 304 0.108329 TGTAACTAGCCCGAGCAAGC 60.108 55.000 0.00 0.00 43.56 4.01
304 305 1.476891 TCTGTAACTAGCCCGAGCAAG 59.523 52.381 0.00 0.00 43.56 4.01
305 306 1.476891 CTCTGTAACTAGCCCGAGCAA 59.523 52.381 0.00 0.00 43.56 3.91
306 307 1.103803 CTCTGTAACTAGCCCGAGCA 58.896 55.000 0.00 0.00 43.56 4.26
307 308 0.386113 CCTCTGTAACTAGCCCGAGC 59.614 60.000 0.00 0.00 40.32 5.03
308 309 2.054232 TCCTCTGTAACTAGCCCGAG 57.946 55.000 0.00 0.00 0.00 4.63
309 310 2.519771 TTCCTCTGTAACTAGCCCGA 57.480 50.000 0.00 0.00 0.00 5.14
310 311 3.821421 ATTTCCTCTGTAACTAGCCCG 57.179 47.619 0.00 0.00 0.00 6.13
311 312 6.659668 AGAAAAATTTCCTCTGTAACTAGCCC 59.340 38.462 2.37 0.00 37.92 5.19
312 313 7.390718 TCAGAAAAATTTCCTCTGTAACTAGCC 59.609 37.037 21.07 0.00 38.20 3.93
313 314 8.324163 TCAGAAAAATTTCCTCTGTAACTAGC 57.676 34.615 21.07 0.00 38.20 3.42
316 317 8.980481 TCTTCAGAAAAATTTCCTCTGTAACT 57.020 30.769 21.07 0.00 38.20 2.24
317 318 8.841300 ACTCTTCAGAAAAATTTCCTCTGTAAC 58.159 33.333 21.07 0.00 38.20 2.50
318 319 8.840321 CACTCTTCAGAAAAATTTCCTCTGTAA 58.160 33.333 21.07 15.46 38.20 2.41
319 320 7.445402 CCACTCTTCAGAAAAATTTCCTCTGTA 59.555 37.037 21.07 14.85 38.20 2.74
320 321 6.264067 CCACTCTTCAGAAAAATTTCCTCTGT 59.736 38.462 21.07 7.07 38.20 3.41
321 322 6.675987 CCACTCTTCAGAAAAATTTCCTCTG 58.324 40.000 18.02 18.02 37.92 3.35
322 323 5.242615 GCCACTCTTCAGAAAAATTTCCTCT 59.757 40.000 2.37 0.00 37.92 3.69
323 324 5.465051 GCCACTCTTCAGAAAAATTTCCTC 58.535 41.667 2.37 0.00 37.92 3.71
324 325 4.022849 CGCCACTCTTCAGAAAAATTTCCT 60.023 41.667 2.37 0.00 37.92 3.36
325 326 4.023193 TCGCCACTCTTCAGAAAAATTTCC 60.023 41.667 2.37 0.00 37.92 3.13
326 327 5.049405 TCTCGCCACTCTTCAGAAAAATTTC 60.049 40.000 0.00 0.00 37.45 2.17
327 328 4.821805 TCTCGCCACTCTTCAGAAAAATTT 59.178 37.500 0.00 0.00 0.00 1.82
328 329 4.389374 TCTCGCCACTCTTCAGAAAAATT 58.611 39.130 0.00 0.00 0.00 1.82
329 330 4.008074 TCTCGCCACTCTTCAGAAAAAT 57.992 40.909 0.00 0.00 0.00 1.82
330 331 3.469008 TCTCGCCACTCTTCAGAAAAA 57.531 42.857 0.00 0.00 0.00 1.94
331 332 3.685139 ATCTCGCCACTCTTCAGAAAA 57.315 42.857 0.00 0.00 0.00 2.29
332 333 4.801330 TTATCTCGCCACTCTTCAGAAA 57.199 40.909 0.00 0.00 0.00 2.52
333 334 4.495422 GTTTATCTCGCCACTCTTCAGAA 58.505 43.478 0.00 0.00 0.00 3.02
334 335 3.119101 GGTTTATCTCGCCACTCTTCAGA 60.119 47.826 0.00 0.00 0.00 3.27
335 336 3.118956 AGGTTTATCTCGCCACTCTTCAG 60.119 47.826 0.00 0.00 0.00 3.02
336 337 2.832129 AGGTTTATCTCGCCACTCTTCA 59.168 45.455 0.00 0.00 0.00 3.02
337 338 3.528597 AGGTTTATCTCGCCACTCTTC 57.471 47.619 0.00 0.00 0.00 2.87
338 339 3.515901 AGAAGGTTTATCTCGCCACTCTT 59.484 43.478 0.00 0.00 0.00 2.85
339 340 3.100671 AGAAGGTTTATCTCGCCACTCT 58.899 45.455 0.00 0.00 0.00 3.24
340 341 3.119101 TCAGAAGGTTTATCTCGCCACTC 60.119 47.826 0.00 0.00 0.00 3.51
341 342 2.832129 TCAGAAGGTTTATCTCGCCACT 59.168 45.455 0.00 0.00 0.00 4.00
342 343 3.247006 TCAGAAGGTTTATCTCGCCAC 57.753 47.619 0.00 0.00 0.00 5.01
343 344 4.487714 AATCAGAAGGTTTATCTCGCCA 57.512 40.909 0.00 0.00 0.00 5.69
344 345 5.119694 AGAAATCAGAAGGTTTATCTCGCC 58.880 41.667 0.00 0.00 0.00 5.54
345 346 6.481984 CAAGAAATCAGAAGGTTTATCTCGC 58.518 40.000 0.00 0.00 0.00 5.03
346 347 6.314896 AGCAAGAAATCAGAAGGTTTATCTCG 59.685 38.462 0.00 0.00 0.00 4.04
347 348 7.201688 GGAGCAAGAAATCAGAAGGTTTATCTC 60.202 40.741 0.00 0.00 0.00 2.75
348 349 6.601217 GGAGCAAGAAATCAGAAGGTTTATCT 59.399 38.462 0.00 0.00 0.00 1.98
349 350 6.183360 GGGAGCAAGAAATCAGAAGGTTTATC 60.183 42.308 0.00 0.00 0.00 1.75
350 351 5.654209 GGGAGCAAGAAATCAGAAGGTTTAT 59.346 40.000 0.00 0.00 0.00 1.40
351 352 5.010282 GGGAGCAAGAAATCAGAAGGTTTA 58.990 41.667 0.00 0.00 0.00 2.01
352 353 3.829026 GGGAGCAAGAAATCAGAAGGTTT 59.171 43.478 0.00 0.00 0.00 3.27
353 354 3.425659 GGGAGCAAGAAATCAGAAGGTT 58.574 45.455 0.00 0.00 0.00 3.50
354 355 2.291217 GGGGAGCAAGAAATCAGAAGGT 60.291 50.000 0.00 0.00 0.00 3.50
355 356 2.025510 AGGGGAGCAAGAAATCAGAAGG 60.026 50.000 0.00 0.00 0.00 3.46
356 357 3.362870 AGGGGAGCAAGAAATCAGAAG 57.637 47.619 0.00 0.00 0.00 2.85
357 358 3.562176 GGAAGGGGAGCAAGAAATCAGAA 60.562 47.826 0.00 0.00 0.00 3.02
358 359 2.025887 GGAAGGGGAGCAAGAAATCAGA 60.026 50.000 0.00 0.00 0.00 3.27
359 360 2.025510 AGGAAGGGGAGCAAGAAATCAG 60.026 50.000 0.00 0.00 0.00 2.90
360 361 1.995542 AGGAAGGGGAGCAAGAAATCA 59.004 47.619 0.00 0.00 0.00 2.57
361 362 2.757314 CAAGGAAGGGGAGCAAGAAATC 59.243 50.000 0.00 0.00 0.00 2.17
362 363 2.110721 ACAAGGAAGGGGAGCAAGAAAT 59.889 45.455 0.00 0.00 0.00 2.17
363 364 1.499007 ACAAGGAAGGGGAGCAAGAAA 59.501 47.619 0.00 0.00 0.00 2.52
364 365 1.149101 ACAAGGAAGGGGAGCAAGAA 58.851 50.000 0.00 0.00 0.00 2.52
365 366 2.038863 TACAAGGAAGGGGAGCAAGA 57.961 50.000 0.00 0.00 0.00 3.02
366 367 2.040412 AGTTACAAGGAAGGGGAGCAAG 59.960 50.000 0.00 0.00 0.00 4.01
367 368 2.062636 AGTTACAAGGAAGGGGAGCAA 58.937 47.619 0.00 0.00 0.00 3.91
368 369 1.351017 CAGTTACAAGGAAGGGGAGCA 59.649 52.381 0.00 0.00 0.00 4.26
369 370 1.628846 TCAGTTACAAGGAAGGGGAGC 59.371 52.381 0.00 0.00 0.00 4.70
370 371 5.366768 TCATATCAGTTACAAGGAAGGGGAG 59.633 44.000 0.00 0.00 0.00 4.30
371 372 5.285401 TCATATCAGTTACAAGGAAGGGGA 58.715 41.667 0.00 0.00 0.00 4.81
372 373 5.630415 TCATATCAGTTACAAGGAAGGGG 57.370 43.478 0.00 0.00 0.00 4.79
373 374 9.799106 AATAATCATATCAGTTACAAGGAAGGG 57.201 33.333 0.00 0.00 0.00 3.95
397 398 9.435688 GAGATTTGGCAACCTTTATTAAACAAT 57.564 29.630 0.00 0.00 0.00 2.71
398 399 8.424918 TGAGATTTGGCAACCTTTATTAAACAA 58.575 29.630 0.00 0.00 0.00 2.83
399 400 7.957002 TGAGATTTGGCAACCTTTATTAAACA 58.043 30.769 0.00 0.00 0.00 2.83
400 401 8.825667 TTGAGATTTGGCAACCTTTATTAAAC 57.174 30.769 0.00 0.00 0.00 2.01
401 402 9.838339 TTTTGAGATTTGGCAACCTTTATTAAA 57.162 25.926 0.00 0.00 0.00 1.52
402 403 9.838339 TTTTTGAGATTTGGCAACCTTTATTAA 57.162 25.926 0.00 0.00 0.00 1.40
432 433 2.029380 GGCGGAACATGGTTAGCTTTTT 60.029 45.455 10.52 0.00 0.00 1.94
433 434 1.544246 GGCGGAACATGGTTAGCTTTT 59.456 47.619 10.52 0.00 0.00 2.27
434 435 1.173913 GGCGGAACATGGTTAGCTTT 58.826 50.000 10.52 0.00 0.00 3.51
435 436 0.679960 GGGCGGAACATGGTTAGCTT 60.680 55.000 10.52 0.00 0.00 3.74
438 439 1.817941 CCGGGCGGAACATGGTTAG 60.818 63.158 0.00 0.00 37.50 2.34
443 444 3.814268 CAAGCCGGGCGGAACATG 61.814 66.667 14.39 3.67 37.50 3.21
455 456 4.799564 TCATTACCAAATTCACCAAGCC 57.200 40.909 0.00 0.00 0.00 4.35
458 459 6.582677 ATCGTTCATTACCAAATTCACCAA 57.417 33.333 0.00 0.00 0.00 3.67
460 461 6.307800 CACAATCGTTCATTACCAAATTCACC 59.692 38.462 0.00 0.00 0.00 4.02
469 470 7.534085 TGAGTTATCACAATCGTTCATTACC 57.466 36.000 0.00 0.00 0.00 2.85
474 475 6.429692 ACCAATTGAGTTATCACAATCGTTCA 59.570 34.615 7.12 0.00 34.71 3.18
475 476 6.842163 ACCAATTGAGTTATCACAATCGTTC 58.158 36.000 7.12 0.00 34.71 3.95
544 546 1.847027 GCGAATTCAAGTAAGCGTCGC 60.847 52.381 9.80 9.80 44.45 5.19
570 572 4.631813 ACAGTTTAGGCGAATTCATGACTC 59.368 41.667 6.22 0.00 0.00 3.36
573 575 5.105106 TCCTACAGTTTAGGCGAATTCATGA 60.105 40.000 6.22 0.00 34.74 3.07
621 623 1.401552 TGTTTCTTCAGTGCACTGTGC 59.598 47.619 38.41 25.15 44.12 4.57
624 626 7.568134 GCATATTTTTGTTTCTTCAGTGCACTG 60.568 37.037 36.07 36.07 45.08 3.66
722 727 2.423538 CGATTACCCAAGGGAAAAGCTG 59.576 50.000 13.15 2.34 38.96 4.24
723 728 2.307686 TCGATTACCCAAGGGAAAAGCT 59.692 45.455 13.15 0.00 38.96 3.74
724 729 2.718563 TCGATTACCCAAGGGAAAAGC 58.281 47.619 13.15 7.57 38.96 3.51
726 731 3.267291 TGGATCGATTACCCAAGGGAAAA 59.733 43.478 13.15 6.16 38.96 2.29
738 750 5.069119 ACTGCAGAATGTACTGGATCGATTA 59.931 40.000 23.35 0.00 37.57 1.75
884 924 2.093447 GGTGGAGAGGATTGTACTGGTG 60.093 54.545 0.00 0.00 0.00 4.17
885 925 2.188817 GGTGGAGAGGATTGTACTGGT 58.811 52.381 0.00 0.00 0.00 4.00
919 959 5.885449 ATACAAGAGAGAGAGGGAAATGG 57.115 43.478 0.00 0.00 0.00 3.16
976 1016 4.880537 CGCCGGACTGCTGCCTAG 62.881 72.222 5.05 0.00 0.00 3.02
1136 1176 8.562892 AGTTGAGTTATACATAGATGCAAATGC 58.437 33.333 0.00 0.00 42.50 3.56
1138 1178 9.836864 TGAGTTGAGTTATACATAGATGCAAAT 57.163 29.630 0.00 0.00 0.00 2.32
1139 1179 9.836864 ATGAGTTGAGTTATACATAGATGCAAA 57.163 29.630 0.00 0.00 0.00 3.68
1149 1189 6.316140 GCATTCACCATGAGTTGAGTTATACA 59.684 38.462 0.00 0.00 34.31 2.29
1821 1861 1.476845 TTCCTTGGCTGTGCGGAGTA 61.477 55.000 0.00 0.00 0.00 2.59
2021 2061 8.625786 AATGATGGATGAACGATGAATGAATA 57.374 30.769 0.00 0.00 0.00 1.75
2026 2066 7.104043 ACAAAATGATGGATGAACGATGAAT 57.896 32.000 0.00 0.00 0.00 2.57
2033 2073 5.472148 TCAGCAACAAAATGATGGATGAAC 58.528 37.500 0.00 0.00 37.32 3.18
2050 2090 7.750229 AGAATCAATACACTTCTTTCAGCAA 57.250 32.000 0.00 0.00 0.00 3.91
2057 2097 9.034544 GCAAAACAAAGAATCAATACACTTCTT 57.965 29.630 0.00 0.00 40.10 2.52
2058 2098 8.416329 AGCAAAACAAAGAATCAATACACTTCT 58.584 29.630 0.00 0.00 0.00 2.85
2069 2109 9.561270 GGAATCTAGTAAGCAAAACAAAGAATC 57.439 33.333 0.00 0.00 0.00 2.52
2076 2116 5.007682 GGGTGGAATCTAGTAAGCAAAACA 58.992 41.667 0.00 0.00 0.00 2.83
2080 2120 2.419574 GCGGGTGGAATCTAGTAAGCAA 60.420 50.000 0.00 0.00 0.00 3.91
2113 2153 2.744202 GTGATTGAGGTACTTGCACCAG 59.256 50.000 0.00 0.00 41.55 4.00
2117 2157 2.637382 TGAGGTGATTGAGGTACTTGCA 59.363 45.455 0.00 0.00 41.55 4.08
2270 3967 6.375174 CCAACATCAAGACATCAAATACTCCA 59.625 38.462 0.00 0.00 0.00 3.86
2272 3969 7.615582 TCCAACATCAAGACATCAAATACTC 57.384 36.000 0.00 0.00 0.00 2.59
2332 4033 6.592220 GTGTTTGTTGTTAGGAAAACCATGTT 59.408 34.615 0.00 0.00 32.72 2.71
2343 4044 8.356657 TCCATTAAAGATGTGTTTGTTGTTAGG 58.643 33.333 0.00 0.00 0.00 2.69
2382 4085 8.466617 ACACTACATTTCATCCCTACTAGTAG 57.533 38.462 21.11 21.11 34.26 2.57
2383 4086 7.228108 CGACACTACATTTCATCCCTACTAGTA 59.772 40.741 1.89 1.89 0.00 1.82
2384 4087 6.039493 CGACACTACATTTCATCCCTACTAGT 59.961 42.308 0.00 0.00 0.00 2.57
2439 4142 4.456911 CGCTTACTAGTATTATGGGACGGA 59.543 45.833 2.79 0.00 0.00 4.69
2444 4147 4.684703 GTGCACGCTTACTAGTATTATGGG 59.315 45.833 0.00 5.97 0.00 4.00
2445 4148 4.381863 CGTGCACGCTTACTAGTATTATGG 59.618 45.833 28.16 0.00 0.00 2.74
2446 4149 4.974275 ACGTGCACGCTTACTAGTATTATG 59.026 41.667 37.35 7.01 44.43 1.90
2447 4150 4.974275 CACGTGCACGCTTACTAGTATTAT 59.026 41.667 37.35 11.31 44.43 1.28
2448 4151 4.142622 ACACGTGCACGCTTACTAGTATTA 60.143 41.667 37.35 0.00 44.43 0.98
2491 4194 7.915397 GTGATTTGCATGGTATCTCGTATTTTT 59.085 33.333 0.00 0.00 0.00 1.94
2524 4227 6.074356 CCAACTTTTTGTAAGTGTGCTATTGC 60.074 38.462 0.00 0.00 40.20 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.