Multiple sequence alignment - TraesCS1A01G054900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G054900 chr1A 100.000 5286 0 0 1 5286 36271811 36266526 0.000000e+00 9762.0
1 TraesCS1A01G054900 chr1A 84.239 184 29 0 3340 3523 36169012 36168829 4.210000e-41 180.0
2 TraesCS1A01G054900 chr1A 92.857 112 4 2 2303 2412 36269397 36269506 5.480000e-35 159.0
3 TraesCS1A01G054900 chr1B 92.414 2834 131 35 1 2787 56883805 56881009 0.000000e+00 3965.0
4 TraesCS1A01G054900 chr1B 95.151 1856 51 11 2821 4668 56881006 56879182 0.000000e+00 2892.0
5 TraesCS1A01G054900 chr1B 81.404 570 83 14 3210 3766 56499048 56498489 1.350000e-120 444.0
6 TraesCS1A01G054900 chr1B 88.201 339 23 10 4661 4986 56878091 56877757 6.420000e-104 388.0
7 TraesCS1A01G054900 chr1B 87.611 113 10 4 1685 1795 484057158 484057048 1.550000e-25 128.0
8 TraesCS1A01G054900 chr1B 78.922 204 25 14 1396 1592 303016713 303016905 7.190000e-24 122.0
9 TraesCS1A01G054900 chr1D 93.529 2210 75 19 2825 5020 36833552 36831397 0.000000e+00 3227.0
10 TraesCS1A01G054900 chr1D 95.894 1583 54 6 1207 2788 36835127 36833555 0.000000e+00 2553.0
11 TraesCS1A01G054900 chr1D 92.590 1201 54 20 1 1176 36836385 36835195 0.000000e+00 1692.0
12 TraesCS1A01G054900 chr1D 85.926 135 19 0 3389 3523 36613153 36613019 1.530000e-30 145.0
13 TraesCS1A01G054900 chr1D 98.214 56 1 0 5231 5286 36660293 36660238 1.210000e-16 99.0
14 TraesCS1A01G054900 chr7D 88.406 138 6 6 2297 2431 412155307 412155177 1.970000e-34 158.0
15 TraesCS1A01G054900 chr7B 91.743 109 8 1 2306 2413 6079438 6079546 3.300000e-32 150.0
16 TraesCS1A01G054900 chr7B 89.474 114 6 3 2306 2418 442376163 442376271 7.140000e-29 139.0
17 TraesCS1A01G054900 chr5A 91.071 112 9 1 2306 2416 223139315 223139204 3.300000e-32 150.0
18 TraesCS1A01G054900 chr5A 80.882 204 23 13 1396 1594 384464007 384463815 4.270000e-31 147.0
19 TraesCS1A01G054900 chr5A 90.265 113 8 3 1685 1795 130251631 130251520 1.530000e-30 145.0
20 TraesCS1A01G054900 chr5A 87.395 119 11 3 2302 2418 223139205 223139321 3.320000e-27 134.0
21 TraesCS1A01G054900 chr5A 86.275 51 5 2 5125 5175 11262289 11262337 3.000000e-03 54.7
22 TraesCS1A01G054900 chr4A 81.188 202 22 12 1398 1594 196772476 196772286 1.190000e-31 148.0
23 TraesCS1A01G054900 chr6B 90.265 113 8 3 1685 1795 492780204 492780093 1.530000e-30 145.0
24 TraesCS1A01G054900 chr6B 93.103 58 4 0 1685 1742 401021572 401021515 9.430000e-13 86.1
25 TraesCS1A01G054900 chr3B 89.381 113 10 2 2303 2413 556503411 556503299 1.980000e-29 141.0
26 TraesCS1A01G054900 chr3B 78.571 196 27 11 1404 1594 254431986 254431801 1.200000e-21 115.0
27 TraesCS1A01G054900 chr6A 89.381 113 9 3 1685 1795 341433058 341433169 7.140000e-29 139.0
28 TraesCS1A01G054900 chr6A 89.535 86 9 0 3632 3717 121746214 121746129 5.600000e-20 110.0
29 TraesCS1A01G054900 chr5B 79.621 211 24 14 1393 1594 235760158 235759958 3.320000e-27 134.0
30 TraesCS1A01G054900 chr4B 78.226 124 16 8 1392 1511 340784260 340784376 9.500000e-08 69.4
31 TraesCS1A01G054900 chr4D 92.308 39 2 1 5137 5175 499285768 499285731 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G054900 chr1A 36266526 36271811 5285 True 9762.000000 9762 100.000000 1 5286 1 chr1A.!!$R2 5285
1 TraesCS1A01G054900 chr1B 56877757 56883805 6048 True 2415.000000 3965 91.922000 1 4986 3 chr1B.!!$R3 4985
2 TraesCS1A01G054900 chr1B 56498489 56499048 559 True 444.000000 444 81.404000 3210 3766 1 chr1B.!!$R1 556
3 TraesCS1A01G054900 chr1D 36831397 36836385 4988 True 2490.666667 3227 94.004333 1 5020 3 chr1D.!!$R3 5019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 905 0.040692 CGCGATCCGAGGTAATTCGA 60.041 55.000 0.00 0.00 43.03 3.71 F
1020 1039 0.105964 TGGGAGAAGGAGATCCGGAG 60.106 60.000 11.34 0.00 42.08 4.63 F
1696 1767 0.386476 TGCTGACTTTTTGCAGGCTG 59.614 50.000 10.94 10.94 32.83 4.85 F
2410 2487 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85 F
2412 2489 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12 F
2819 2897 3.178865 ACAAGAATTTAGGACGGAGGGA 58.821 45.455 0.00 0.00 0.00 4.20 F
3768 3877 3.300009 CGCTCATTTTCAAAGGTGTGAC 58.700 45.455 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2808 2886 1.594129 AGTAGTACTCCCTCCGTCCT 58.406 55.0 0.00 0.00 0.00 3.85 R
2811 2889 2.240667 TGCTAAGTAGTACTCCCTCCGT 59.759 50.0 2.58 0.00 0.00 4.69 R
3556 3642 0.674581 CTTCATGCAGCCTGGTTCGA 60.675 55.0 0.00 0.00 0.00 3.71 R
4094 4203 0.167908 GATGTGACGGCAAATTGCGA 59.832 50.0 12.15 0.00 46.21 5.10 R
4095 4204 0.168788 AGATGTGACGGCAAATTGCG 59.831 50.0 12.15 9.74 46.21 4.85 R
4099 4208 0.527565 GCCAAGATGTGACGGCAAAT 59.472 50.0 0.00 0.00 44.25 2.32 R
4827 6046 0.690192 TTCTTCATGTCCTTCCGGCA 59.310 50.0 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.229784 CATGATTAAGCTCACAACAAATATGAC 57.770 33.333 0.00 0.00 0.00 3.06
87 90 6.016360 CACTGTACAATCAAAATTGACCTGGA 60.016 38.462 0.00 0.00 44.25 3.86
97 100 6.930164 TCAAAATTGACCTGGAATTCATGTTG 59.070 34.615 7.93 2.46 31.01 3.33
103 106 5.241506 TGACCTGGAATTCATGTTGAGAAAC 59.758 40.000 7.93 0.00 0.00 2.78
107 110 6.271488 TGGAATTCATGTTGAGAAACCATC 57.729 37.500 7.93 0.00 33.73 3.51
109 112 6.095377 GGAATTCATGTTGAGAAACCATCAC 58.905 40.000 7.93 0.00 0.00 3.06
111 114 5.694231 TTCATGTTGAGAAACCATCACAG 57.306 39.130 0.00 0.00 30.04 3.66
113 116 5.375773 TCATGTTGAGAAACCATCACAGAA 58.624 37.500 0.00 0.00 30.04 3.02
117 122 5.702670 TGTTGAGAAACCATCACAGAATCTC 59.297 40.000 0.00 0.00 34.01 2.75
120 125 6.871844 TGAGAAACCATCACAGAATCTCTAG 58.128 40.000 0.00 0.00 34.41 2.43
142 147 6.961360 AGGCTAACAAAAATATCCTTAGGC 57.039 37.500 0.00 0.00 39.23 3.93
146 151 7.255277 GGCTAACAAAAATATCCTTAGGCTCTG 60.255 40.741 0.00 0.00 37.15 3.35
147 152 7.499232 GCTAACAAAAATATCCTTAGGCTCTGA 59.501 37.037 0.00 0.00 0.00 3.27
148 153 7.872113 AACAAAAATATCCTTAGGCTCTGAG 57.128 36.000 0.00 0.00 0.00 3.35
149 154 6.963322 ACAAAAATATCCTTAGGCTCTGAGT 58.037 36.000 6.53 0.00 0.00 3.41
150 155 6.825721 ACAAAAATATCCTTAGGCTCTGAGTG 59.174 38.462 6.53 0.00 0.00 3.51
151 156 4.615588 AATATCCTTAGGCTCTGAGTGC 57.384 45.455 6.53 0.00 0.00 4.40
208 219 3.006217 GCTTCAAAGATTCCAACCAAGCT 59.994 43.478 0.00 0.00 33.68 3.74
413 424 2.342279 CCGGACGAAGCTGAACCA 59.658 61.111 0.00 0.00 0.00 3.67
660 673 2.040412 CCACTAAAAGCCCAGGAAGACT 59.960 50.000 0.00 0.00 0.00 3.24
866 885 1.523524 GAAATCCGGCGGGTTCCTA 59.476 57.895 26.78 4.76 33.83 2.94
868 887 2.582734 AAATCCGGCGGGTTCCTACG 62.583 60.000 26.78 0.00 33.83 3.51
886 905 0.040692 CGCGATCCGAGGTAATTCGA 60.041 55.000 0.00 0.00 43.03 3.71
933 952 1.852895 GATTTTGTCGATCTCGGTCGG 59.147 52.381 0.00 0.00 41.74 4.79
951 970 1.990563 CGGTTTCTCGCTGTAATCGTT 59.009 47.619 0.00 0.00 0.00 3.85
952 971 2.222508 CGGTTTCTCGCTGTAATCGTTG 60.223 50.000 0.00 0.00 0.00 4.10
953 972 2.474032 GGTTTCTCGCTGTAATCGTTGC 60.474 50.000 0.00 0.00 0.00 4.17
1017 1036 1.617850 CAGATGGGAGAAGGAGATCCG 59.382 57.143 0.00 0.00 42.08 4.18
1020 1039 0.105964 TGGGAGAAGGAGATCCGGAG 60.106 60.000 11.34 0.00 42.08 4.63
1057 1079 3.878519 CGGAGACCTCGACCTCGC 61.879 72.222 0.00 0.00 39.60 5.03
1164 1198 2.751913 CCGAGACCACGTCCTCGAG 61.752 68.421 24.36 5.13 36.28 4.04
1176 1210 4.711178 CGTCCTCGAGCACCATAAGGTC 62.711 59.091 6.99 0.00 42.67 3.85
1188 1249 3.470709 CCATAAGGTCTAGGACGTCGTA 58.529 50.000 16.44 16.44 32.65 3.43
1191 1252 5.450171 CATAAGGTCTAGGACGTCGTATTG 58.550 45.833 17.54 8.10 32.65 1.90
1200 1261 3.255149 AGGACGTCGTATTGTCTGTTCTT 59.745 43.478 9.40 0.00 35.45 2.52
1201 1262 3.364023 GGACGTCGTATTGTCTGTTCTTG 59.636 47.826 9.92 0.00 35.45 3.02
1203 1264 3.734231 ACGTCGTATTGTCTGTTCTTGTG 59.266 43.478 0.00 0.00 0.00 3.33
1204 1265 3.978855 CGTCGTATTGTCTGTTCTTGTGA 59.021 43.478 0.00 0.00 0.00 3.58
1205 1266 4.443063 CGTCGTATTGTCTGTTCTTGTGAA 59.557 41.667 0.00 0.00 0.00 3.18
1210 1281 5.779529 ATTGTCTGTTCTTGTGAAAGCAT 57.220 34.783 0.00 0.00 33.52 3.79
1214 1285 1.266718 TGTTCTTGTGAAAGCATCCGC 59.733 47.619 0.00 0.00 33.52 5.54
1234 1305 1.739035 CGCTACTGATTTCTGCGGGAA 60.739 52.381 0.00 0.00 42.46 3.97
1241 1312 2.290260 TGATTTCTGCGGGAACTGTGAT 60.290 45.455 0.00 0.00 36.83 3.06
1448 1519 2.554785 CCCGAGGTATCCGAATAGTCCT 60.555 54.545 0.00 0.00 0.00 3.85
1467 1538 7.462571 AGTCCTGAGTTTTAGTTTTGTGTTT 57.537 32.000 0.00 0.00 0.00 2.83
1480 1551 3.320610 TTGTGTTTCAGGGGATTTCCA 57.679 42.857 0.00 0.00 37.91 3.53
1484 1555 3.193479 GTGTTTCAGGGGATTTCCATGTC 59.807 47.826 0.00 0.00 46.65 3.06
1485 1556 3.181424 TGTTTCAGGGGATTTCCATGTCA 60.181 43.478 0.00 0.00 46.65 3.58
1580 1651 3.023832 AGAAGTGGTGTTTGAAACCCAG 58.976 45.455 15.44 0.00 36.83 4.45
1601 1672 5.355350 CCAGTTCTTAACAGTGATGGAATCC 59.645 44.000 0.00 0.00 44.73 3.01
1604 1675 5.925506 TCTTAACAGTGATGGAATCCGTA 57.074 39.130 0.00 0.00 44.73 4.02
1623 1694 6.688578 TCCGTATAGATGATTAAGAGTTGCC 58.311 40.000 0.00 0.00 0.00 4.52
1696 1767 0.386476 TGCTGACTTTTTGCAGGCTG 59.614 50.000 10.94 10.94 32.83 4.85
1893 1964 5.163663 CGTTACATGTGATGCACCCTTATTT 60.164 40.000 9.11 0.00 32.73 1.40
1962 2033 2.948979 ACAAATCGTGCCTTCTTGTCAA 59.051 40.909 0.00 0.00 0.00 3.18
2065 2136 5.493613 TGGCCTTCCATCTATGATCCAATAT 59.506 40.000 3.32 0.00 37.47 1.28
2156 2227 9.636879 TTTATGTGAATGATGGTTATTGTGTTG 57.363 29.630 0.00 0.00 0.00 3.33
2334 2405 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
2382 2453 9.473640 AAAGTTAGTACAAGCTAGTACAAAGTC 57.526 33.333 6.97 0.00 45.25 3.01
2398 2475 6.300354 ACAAAGTCGAGTCACTTATTTTGG 57.700 37.500 11.39 0.00 35.45 3.28
2400 2477 4.884668 AGTCGAGTCACTTATTTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
2401 2478 4.566987 AGTCGAGTCACTTATTTTGGGAC 58.433 43.478 0.00 0.00 0.00 4.46
2402 2479 3.367025 GTCGAGTCACTTATTTTGGGACG 59.633 47.826 0.00 0.00 33.84 4.79
2403 2480 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
2404 2481 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
2405 2482 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2406 2483 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2407 2484 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2408 2485 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2409 2486 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2410 2487 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2411 2488 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2412 2489 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2746 2823 7.871463 ACTTAGCGTTCTCAAACTACTAATGTT 59.129 33.333 0.00 0.00 34.20 2.71
2789 2867 8.647796 AGTATGTATGCCAAGCTACTATTTACA 58.352 33.333 0.00 0.00 0.00 2.41
2790 2868 9.268268 GTATGTATGCCAAGCTACTATTTACAA 57.732 33.333 0.00 0.00 0.00 2.41
2791 2869 8.746052 ATGTATGCCAAGCTACTATTTACAAA 57.254 30.769 0.00 0.00 0.00 2.83
2792 2870 8.746052 TGTATGCCAAGCTACTATTTACAAAT 57.254 30.769 0.00 0.00 0.00 2.32
2793 2871 8.836413 TGTATGCCAAGCTACTATTTACAAATC 58.164 33.333 0.00 0.00 0.00 2.17
2794 2872 9.057089 GTATGCCAAGCTACTATTTACAAATCT 57.943 33.333 0.00 0.00 0.00 2.40
2796 2874 9.627123 ATGCCAAGCTACTATTTACAAATCTAA 57.373 29.630 0.00 0.00 0.00 2.10
2797 2875 9.109393 TGCCAAGCTACTATTTACAAATCTAAG 57.891 33.333 0.00 0.00 0.00 2.18
2798 2876 9.326413 GCCAAGCTACTATTTACAAATCTAAGA 57.674 33.333 0.00 0.00 0.00 2.10
2813 2891 8.936864 ACAAATCTAAGACAAGAATTTAGGACG 58.063 33.333 0.00 0.00 0.00 4.79
2814 2892 8.391106 CAAATCTAAGACAAGAATTTAGGACGG 58.609 37.037 0.00 0.00 0.00 4.79
2815 2893 6.845758 TCTAAGACAAGAATTTAGGACGGA 57.154 37.500 0.00 0.00 0.00 4.69
2816 2894 6.864342 TCTAAGACAAGAATTTAGGACGGAG 58.136 40.000 0.00 0.00 0.00 4.63
2817 2895 4.473477 AGACAAGAATTTAGGACGGAGG 57.527 45.455 0.00 0.00 0.00 4.30
2818 2896 3.197983 AGACAAGAATTTAGGACGGAGGG 59.802 47.826 0.00 0.00 0.00 4.30
2819 2897 3.178865 ACAAGAATTTAGGACGGAGGGA 58.821 45.455 0.00 0.00 0.00 4.20
2917 2996 4.159693 AGTCACGTTGGATAACTGATGCTA 59.840 41.667 0.00 0.00 34.60 3.49
3015 3094 4.717991 TCGTTTAAGCATGTGCACAATAC 58.282 39.130 25.72 15.86 45.16 1.89
3556 3642 6.711277 TGGATTACACTGAAGTTATCTGCTT 58.289 36.000 0.00 0.00 30.52 3.91
3597 3683 7.665559 TGAAGACTTTTACTAATGTGGAATGCT 59.334 33.333 0.00 0.00 0.00 3.79
3725 3834 7.148340 GGTTCATTTGTCACTGAGAGGATTAAG 60.148 40.741 0.00 0.00 0.00 1.85
3768 3877 3.300009 CGCTCATTTTCAAAGGTGTGAC 58.700 45.455 0.00 0.00 0.00 3.67
3803 3912 8.370940 TCACATGTTGCCTTTTTATGGATTTTA 58.629 29.630 0.00 0.00 0.00 1.52
3832 3941 6.363088 TCTGCAATAAATTTCAAAACTGCTCG 59.637 34.615 0.00 0.00 0.00 5.03
3965 4074 7.023575 CCAGAAGTTTTCATACAAGCATGTAC 58.976 38.462 3.52 0.00 44.47 2.90
4052 4161 6.385759 ACCACCATATCACATAGTTTACCTCA 59.614 38.462 0.00 0.00 0.00 3.86
4084 4193 8.306313 TGCTCTGTTCTAGGAACTTATAATCA 57.694 34.615 10.98 0.08 41.75 2.57
4088 4197 8.928448 TCTGTTCTAGGAACTTATAATCAGCAT 58.072 33.333 10.98 0.00 41.75 3.79
4102 4211 3.853831 TCAGCATGATGTTCGCAATTT 57.146 38.095 11.32 0.00 42.56 1.82
4103 4212 3.503891 TCAGCATGATGTTCGCAATTTG 58.496 40.909 11.32 0.00 42.56 2.32
4104 4213 2.028763 CAGCATGATGTTCGCAATTTGC 59.971 45.455 11.42 11.42 39.69 3.68
4105 4214 1.325338 GCATGATGTTCGCAATTTGCC 59.675 47.619 15.45 2.72 41.12 4.52
4106 4215 1.584761 CATGATGTTCGCAATTTGCCG 59.415 47.619 15.45 10.63 41.12 5.69
4126 4235 2.045926 ACATCTTGGCAGGGCGAC 60.046 61.111 0.00 0.00 0.00 5.19
4201 4310 4.192317 AGCCCATTTCAGTCGATACTTTC 58.808 43.478 0.00 0.00 31.97 2.62
4349 4459 3.695830 TCGGGCATTCTTCTGTACTTT 57.304 42.857 0.00 0.00 0.00 2.66
4353 4463 4.215399 CGGGCATTCTTCTGTACTTTGAAA 59.785 41.667 0.00 0.00 0.00 2.69
4383 4493 8.904712 CCGCATTATTATTGTCAATGTTATGTG 58.095 33.333 8.39 11.45 33.22 3.21
4487 4605 3.469739 CAATTGGCAAGCAAGTCCTTTT 58.530 40.909 5.96 0.00 0.00 2.27
4488 4606 3.843893 ATTGGCAAGCAAGTCCTTTTT 57.156 38.095 5.96 0.00 0.00 1.94
4489 4607 2.888834 TGGCAAGCAAGTCCTTTTTC 57.111 45.000 0.00 0.00 0.00 2.29
4490 4608 2.387757 TGGCAAGCAAGTCCTTTTTCT 58.612 42.857 0.00 0.00 0.00 2.52
4512 4631 9.787532 TTTCTTTTCTTGTTCAACTGTATGAAG 57.212 29.630 5.91 0.00 39.84 3.02
4564 4683 7.358435 CGCTTAAGTAATGATGAACACCTATCG 60.358 40.741 4.02 0.00 0.00 2.92
4667 5886 3.564235 ATGGCAGCGCATATGTTTATG 57.436 42.857 11.47 0.00 38.61 1.90
4761 5980 5.565592 AGATGTTGAAAAATGCAGCGATA 57.434 34.783 0.00 0.00 0.00 2.92
4794 6013 2.954792 GGGAGGATCATTCATGCCTTT 58.045 47.619 0.00 0.00 40.60 3.11
4812 6031 4.330250 CCTTTGGGCATACTATGATCCAG 58.670 47.826 0.00 0.00 36.80 3.86
4827 6046 5.426689 TGATCCAGATCTAGCAACAACTT 57.573 39.130 8.99 0.00 38.60 2.66
4852 6071 3.553511 CGGAAGGACATGAAGAAAGATCG 59.446 47.826 0.00 0.00 0.00 3.69
4861 6080 2.151202 GAAGAAAGATCGTGCCAACCA 58.849 47.619 0.00 0.00 0.00 3.67
4973 6218 6.238484 GCCGATGAAAGTGCATCTTTTATACT 60.238 38.462 14.46 1.03 45.15 2.12
4976 6221 8.276325 CGATGAAAGTGCATCTTTTATACTACC 58.724 37.037 14.46 5.98 45.15 3.18
5001 6246 6.710295 CACTATTGGGAATCGGTGATTAATGA 59.290 38.462 0.00 0.00 31.89 2.57
5002 6247 6.710744 ACTATTGGGAATCGGTGATTAATGAC 59.289 38.462 0.00 0.00 31.89 3.06
5012 6257 6.841119 TCGGTGATTAATGACAAGACAATTG 58.159 36.000 7.37 3.24 0.00 2.32
5020 6265 4.935352 TGACAAGACAATTGAAAAGGGG 57.065 40.909 13.59 0.00 0.00 4.79
5021 6266 4.541705 TGACAAGACAATTGAAAAGGGGA 58.458 39.130 13.59 0.00 0.00 4.81
5022 6267 4.340950 TGACAAGACAATTGAAAAGGGGAC 59.659 41.667 13.59 0.00 0.00 4.46
5024 6269 5.701224 ACAAGACAATTGAAAAGGGGACTA 58.299 37.500 13.59 0.00 42.68 2.59
5025 6270 6.133356 ACAAGACAATTGAAAAGGGGACTAA 58.867 36.000 13.59 0.00 42.68 2.24
5026 6271 6.040504 ACAAGACAATTGAAAAGGGGACTAAC 59.959 38.462 13.59 0.00 42.68 2.34
5027 6272 5.701224 AGACAATTGAAAAGGGGACTAACA 58.299 37.500 13.59 0.00 42.68 2.41
5028 6273 6.314917 AGACAATTGAAAAGGGGACTAACAT 58.685 36.000 13.59 0.00 42.68 2.71
5029 6274 6.782494 AGACAATTGAAAAGGGGACTAACATT 59.218 34.615 13.59 0.00 42.68 2.71
5030 6275 7.947890 AGACAATTGAAAAGGGGACTAACATTA 59.052 33.333 13.59 0.00 42.68 1.90
5031 6276 8.485578 ACAATTGAAAAGGGGACTAACATTAA 57.514 30.769 13.59 0.00 42.68 1.40
5032 6277 9.100197 ACAATTGAAAAGGGGACTAACATTAAT 57.900 29.630 13.59 0.00 42.68 1.40
5033 6278 9.586435 CAATTGAAAAGGGGACTAACATTAATC 57.414 33.333 0.00 0.00 42.68 1.75
5034 6279 8.893563 ATTGAAAAGGGGACTAACATTAATCA 57.106 30.769 0.00 0.00 42.68 2.57
5035 6280 8.713708 TTGAAAAGGGGACTAACATTAATCAA 57.286 30.769 0.00 0.00 42.68 2.57
5036 6281 8.348285 TGAAAAGGGGACTAACATTAATCAAG 57.652 34.615 0.00 0.00 42.68 3.02
5037 6282 7.947890 TGAAAAGGGGACTAACATTAATCAAGT 59.052 33.333 0.00 0.00 42.68 3.16
5038 6283 8.721133 AAAAGGGGACTAACATTAATCAAGTT 57.279 30.769 0.00 0.00 42.68 2.66
5039 6284 8.721133 AAAGGGGACTAACATTAATCAAGTTT 57.279 30.769 0.00 0.00 42.68 2.66
5040 6285 9.816787 AAAGGGGACTAACATTAATCAAGTTTA 57.183 29.630 0.00 0.00 42.68 2.01
5041 6286 9.816787 AAGGGGACTAACATTAATCAAGTTTAA 57.183 29.630 0.00 0.00 42.68 1.52
5042 6287 9.990868 AGGGGACTAACATTAATCAAGTTTAAT 57.009 29.630 0.00 0.00 40.61 1.40
5070 6315 6.968131 TCAAGAAATTAGTCCTCATGTTCG 57.032 37.500 0.00 0.00 0.00 3.95
5071 6316 6.464222 TCAAGAAATTAGTCCTCATGTTCGT 58.536 36.000 0.00 0.00 0.00 3.85
5072 6317 6.368791 TCAAGAAATTAGTCCTCATGTTCGTG 59.631 38.462 0.00 0.00 0.00 4.35
5073 6318 5.794894 AGAAATTAGTCCTCATGTTCGTGT 58.205 37.500 0.00 0.00 0.00 4.49
5074 6319 5.639506 AGAAATTAGTCCTCATGTTCGTGTG 59.360 40.000 0.00 0.00 0.00 3.82
5075 6320 4.537135 ATTAGTCCTCATGTTCGTGTGT 57.463 40.909 0.00 0.00 0.00 3.72
5076 6321 5.654603 ATTAGTCCTCATGTTCGTGTGTA 57.345 39.130 0.00 0.00 0.00 2.90
5077 6322 5.456548 TTAGTCCTCATGTTCGTGTGTAA 57.543 39.130 0.00 0.00 0.00 2.41
5078 6323 4.330944 AGTCCTCATGTTCGTGTGTAAA 57.669 40.909 0.00 0.00 0.00 2.01
5079 6324 4.056050 AGTCCTCATGTTCGTGTGTAAAC 58.944 43.478 0.00 0.00 0.00 2.01
5080 6325 3.805422 GTCCTCATGTTCGTGTGTAAACA 59.195 43.478 0.00 0.00 39.52 2.83
5081 6326 4.451096 GTCCTCATGTTCGTGTGTAAACAT 59.549 41.667 0.00 0.00 44.72 2.71
5082 6327 4.688879 TCCTCATGTTCGTGTGTAAACATC 59.311 41.667 0.00 0.00 42.62 3.06
5083 6328 4.450757 CCTCATGTTCGTGTGTAAACATCA 59.549 41.667 0.00 0.00 42.62 3.07
5084 6329 5.049749 CCTCATGTTCGTGTGTAAACATCAA 60.050 40.000 0.00 0.00 42.62 2.57
5085 6330 6.348458 CCTCATGTTCGTGTGTAAACATCAAT 60.348 38.462 0.00 0.00 42.62 2.57
5086 6331 6.369799 TCATGTTCGTGTGTAAACATCAATG 58.630 36.000 0.00 0.00 42.62 2.82
5087 6332 5.102020 TGTTCGTGTGTAAACATCAATGG 57.898 39.130 0.00 0.00 30.73 3.16
5088 6333 4.576873 TGTTCGTGTGTAAACATCAATGGT 59.423 37.500 0.00 0.00 30.73 3.55
5089 6334 4.740741 TCGTGTGTAAACATCAATGGTG 57.259 40.909 0.00 0.00 0.00 4.17
5090 6335 4.381411 TCGTGTGTAAACATCAATGGTGA 58.619 39.130 0.00 0.00 38.41 4.02
5091 6336 4.450757 TCGTGTGTAAACATCAATGGTGAG 59.549 41.667 0.00 0.00 37.14 3.51
5092 6337 4.475944 GTGTGTAAACATCAATGGTGAGC 58.524 43.478 0.00 0.00 37.14 4.26
5093 6338 3.505680 TGTGTAAACATCAATGGTGAGCC 59.494 43.478 0.00 0.00 37.14 4.70
5094 6339 3.088532 TGTAAACATCAATGGTGAGCCC 58.911 45.455 0.00 0.00 37.14 5.19
5095 6340 2.610438 AAACATCAATGGTGAGCCCT 57.390 45.000 0.00 0.00 37.14 5.19
5096 6341 3.737559 AAACATCAATGGTGAGCCCTA 57.262 42.857 0.00 0.00 37.14 3.53
5097 6342 3.959495 AACATCAATGGTGAGCCCTAT 57.041 42.857 0.00 0.00 37.14 2.57
5098 6343 3.959495 ACATCAATGGTGAGCCCTATT 57.041 42.857 0.00 0.00 37.14 1.73
5099 6344 4.255510 ACATCAATGGTGAGCCCTATTT 57.744 40.909 0.00 0.00 37.14 1.40
5100 6345 4.613437 ACATCAATGGTGAGCCCTATTTT 58.387 39.130 0.00 0.00 37.14 1.82
5101 6346 5.025453 ACATCAATGGTGAGCCCTATTTTT 58.975 37.500 0.00 0.00 37.14 1.94
5102 6347 5.105228 ACATCAATGGTGAGCCCTATTTTTG 60.105 40.000 0.00 0.00 37.14 2.44
5103 6348 3.768757 TCAATGGTGAGCCCTATTTTTGG 59.231 43.478 0.00 0.00 0.00 3.28
5104 6349 2.990740 TGGTGAGCCCTATTTTTGGT 57.009 45.000 0.00 0.00 0.00 3.67
5105 6350 3.252554 TGGTGAGCCCTATTTTTGGTT 57.747 42.857 0.00 0.00 0.00 3.67
5106 6351 3.161866 TGGTGAGCCCTATTTTTGGTTC 58.838 45.455 0.00 0.00 32.96 3.62
5107 6352 3.181423 TGGTGAGCCCTATTTTTGGTTCT 60.181 43.478 0.00 0.00 33.46 3.01
5108 6353 3.193479 GGTGAGCCCTATTTTTGGTTCTG 59.807 47.826 0.00 0.00 33.46 3.02
5109 6354 2.825532 TGAGCCCTATTTTTGGTTCTGC 59.174 45.455 0.00 0.00 33.46 4.26
5110 6355 2.825532 GAGCCCTATTTTTGGTTCTGCA 59.174 45.455 0.00 0.00 0.00 4.41
5111 6356 3.238597 AGCCCTATTTTTGGTTCTGCAA 58.761 40.909 0.00 0.00 0.00 4.08
5112 6357 3.259123 AGCCCTATTTTTGGTTCTGCAAG 59.741 43.478 0.00 0.00 0.00 4.01
5113 6358 3.006859 GCCCTATTTTTGGTTCTGCAAGT 59.993 43.478 0.00 0.00 33.76 3.16
5114 6359 4.559153 CCCTATTTTTGGTTCTGCAAGTG 58.441 43.478 0.00 0.00 33.76 3.16
5115 6360 4.280677 CCCTATTTTTGGTTCTGCAAGTGA 59.719 41.667 0.00 0.00 33.76 3.41
5116 6361 5.047092 CCCTATTTTTGGTTCTGCAAGTGAT 60.047 40.000 0.00 0.00 33.76 3.06
5117 6362 6.458210 CCTATTTTTGGTTCTGCAAGTGATT 58.542 36.000 0.00 0.00 33.76 2.57
5118 6363 6.930722 CCTATTTTTGGTTCTGCAAGTGATTT 59.069 34.615 0.00 0.00 33.76 2.17
5119 6364 7.442062 CCTATTTTTGGTTCTGCAAGTGATTTT 59.558 33.333 0.00 0.00 33.76 1.82
5120 6365 6.660887 TTTTTGGTTCTGCAAGTGATTTTC 57.339 33.333 0.00 0.00 33.76 2.29
5121 6366 5.596836 TTTGGTTCTGCAAGTGATTTTCT 57.403 34.783 0.00 0.00 33.76 2.52
5122 6367 5.596836 TTGGTTCTGCAAGTGATTTTCTT 57.403 34.783 0.00 0.00 33.76 2.52
5123 6368 5.186996 TGGTTCTGCAAGTGATTTTCTTC 57.813 39.130 0.00 0.00 33.76 2.87
5124 6369 4.037923 TGGTTCTGCAAGTGATTTTCTTCC 59.962 41.667 0.00 0.00 33.76 3.46
5125 6370 4.279420 GGTTCTGCAAGTGATTTTCTTCCT 59.721 41.667 0.00 0.00 33.76 3.36
5126 6371 5.473504 GGTTCTGCAAGTGATTTTCTTCCTA 59.526 40.000 0.00 0.00 33.76 2.94
5127 6372 6.016276 GGTTCTGCAAGTGATTTTCTTCCTAA 60.016 38.462 0.00 0.00 33.76 2.69
5128 6373 7.425606 GTTCTGCAAGTGATTTTCTTCCTAAA 58.574 34.615 0.00 0.00 33.76 1.85
5129 6374 7.765695 TCTGCAAGTGATTTTCTTCCTAAAT 57.234 32.000 0.00 0.00 33.76 1.40
5130 6375 7.820648 TCTGCAAGTGATTTTCTTCCTAAATC 58.179 34.615 0.00 0.00 40.66 2.17
5131 6376 7.667219 TCTGCAAGTGATTTTCTTCCTAAATCT 59.333 33.333 0.00 0.00 40.80 2.40
5132 6377 8.862325 TGCAAGTGATTTTCTTCCTAAATCTA 57.138 30.769 0.00 0.00 40.80 1.98
5133 6378 8.950210 TGCAAGTGATTTTCTTCCTAAATCTAG 58.050 33.333 0.00 0.00 40.80 2.43
5134 6379 9.167311 GCAAGTGATTTTCTTCCTAAATCTAGA 57.833 33.333 0.00 0.00 40.80 2.43
5136 6381 9.674068 AAGTGATTTTCTTCCTAAATCTAGACC 57.326 33.333 0.00 0.00 40.80 3.85
5137 6382 8.826765 AGTGATTTTCTTCCTAAATCTAGACCA 58.173 33.333 0.00 0.00 40.80 4.02
5138 6383 9.449719 GTGATTTTCTTCCTAAATCTAGACCAA 57.550 33.333 0.00 0.00 40.80 3.67
5143 6388 7.923414 TCTTCCTAAATCTAGACCAAAAAGC 57.077 36.000 0.00 0.00 0.00 3.51
5144 6389 7.458397 TCTTCCTAAATCTAGACCAAAAAGCA 58.542 34.615 0.00 0.00 0.00 3.91
5145 6390 8.109634 TCTTCCTAAATCTAGACCAAAAAGCAT 58.890 33.333 0.00 0.00 0.00 3.79
5146 6391 7.630242 TCCTAAATCTAGACCAAAAAGCATG 57.370 36.000 0.00 0.00 0.00 4.06
5147 6392 7.175104 TCCTAAATCTAGACCAAAAAGCATGT 58.825 34.615 0.00 0.00 0.00 3.21
5148 6393 7.669722 TCCTAAATCTAGACCAAAAAGCATGTT 59.330 33.333 0.00 0.00 0.00 2.71
5149 6394 8.956426 CCTAAATCTAGACCAAAAAGCATGTTA 58.044 33.333 0.00 0.00 0.00 2.41
5166 6411 8.627208 AGCATGTTATATTTTGATACAGAGGG 57.373 34.615 0.00 0.00 0.00 4.30
5167 6412 8.439971 AGCATGTTATATTTTGATACAGAGGGA 58.560 33.333 0.00 0.00 0.00 4.20
5168 6413 8.725148 GCATGTTATATTTTGATACAGAGGGAG 58.275 37.037 0.00 0.00 0.00 4.30
5169 6414 9.784531 CATGTTATATTTTGATACAGAGGGAGT 57.215 33.333 0.00 0.00 0.00 3.85
5179 6424 8.707796 TTGATACAGAGGGAGTACTTTATAGG 57.292 38.462 0.00 0.00 0.00 2.57
5180 6425 7.823635 TGATACAGAGGGAGTACTTTATAGGT 58.176 38.462 0.00 0.00 0.00 3.08
5181 6426 8.287350 TGATACAGAGGGAGTACTTTATAGGTT 58.713 37.037 0.00 0.00 0.00 3.50
5182 6427 9.145442 GATACAGAGGGAGTACTTTATAGGTTT 57.855 37.037 0.00 0.00 0.00 3.27
5183 6428 7.809880 ACAGAGGGAGTACTTTATAGGTTTT 57.190 36.000 0.00 0.00 0.00 2.43
5184 6429 8.215954 ACAGAGGGAGTACTTTATAGGTTTTT 57.784 34.615 0.00 0.00 0.00 1.94
5185 6430 9.330220 ACAGAGGGAGTACTTTATAGGTTTTTA 57.670 33.333 0.00 0.00 0.00 1.52
5211 6456 9.868277 ATTTAATTTGAATCCGAATTAAGTGCA 57.132 25.926 0.00 0.00 43.80 4.57
5212 6457 9.698309 TTTAATTTGAATCCGAATTAAGTGCAA 57.302 25.926 0.00 0.00 43.80 4.08
5213 6458 7.816945 AATTTGAATCCGAATTAAGTGCAAG 57.183 32.000 0.00 0.00 35.23 4.01
5214 6459 6.567687 TTTGAATCCGAATTAAGTGCAAGA 57.432 33.333 0.00 0.00 0.00 3.02
5215 6460 5.545658 TGAATCCGAATTAAGTGCAAGAC 57.454 39.130 0.00 0.00 0.00 3.01
5216 6461 5.000591 TGAATCCGAATTAAGTGCAAGACA 58.999 37.500 0.00 0.00 0.00 3.41
5217 6462 5.471797 TGAATCCGAATTAAGTGCAAGACAA 59.528 36.000 0.00 0.00 0.00 3.18
5218 6463 6.150976 TGAATCCGAATTAAGTGCAAGACAAT 59.849 34.615 0.00 0.00 0.00 2.71
5219 6464 5.545658 TCCGAATTAAGTGCAAGACAATC 57.454 39.130 0.00 0.00 0.00 2.67
5220 6465 5.000591 TCCGAATTAAGTGCAAGACAATCA 58.999 37.500 0.00 0.00 0.00 2.57
5221 6466 5.647658 TCCGAATTAAGTGCAAGACAATCAT 59.352 36.000 0.00 0.00 0.00 2.45
5222 6467 6.821160 TCCGAATTAAGTGCAAGACAATCATA 59.179 34.615 0.00 0.00 0.00 2.15
5223 6468 6.907212 CCGAATTAAGTGCAAGACAATCATAC 59.093 38.462 0.00 0.00 0.00 2.39
5224 6469 7.201644 CCGAATTAAGTGCAAGACAATCATACT 60.202 37.037 0.00 0.00 0.00 2.12
5225 6470 8.817100 CGAATTAAGTGCAAGACAATCATACTA 58.183 33.333 0.00 0.00 0.00 1.82
5228 6473 9.836864 ATTAAGTGCAAGACAATCATACTATCA 57.163 29.630 0.00 0.00 0.00 2.15
5229 6474 9.665719 TTAAGTGCAAGACAATCATACTATCAA 57.334 29.630 0.00 0.00 0.00 2.57
5230 6475 7.783090 AGTGCAAGACAATCATACTATCAAG 57.217 36.000 0.00 0.00 0.00 3.02
5231 6476 7.559486 AGTGCAAGACAATCATACTATCAAGA 58.441 34.615 0.00 0.00 0.00 3.02
5232 6477 7.710044 AGTGCAAGACAATCATACTATCAAGAG 59.290 37.037 0.00 0.00 0.00 2.85
5233 6478 6.988580 TGCAAGACAATCATACTATCAAGAGG 59.011 38.462 0.00 0.00 0.00 3.69
5234 6479 6.426328 GCAAGACAATCATACTATCAAGAGGG 59.574 42.308 0.00 0.00 0.00 4.30
5235 6480 7.687837 GCAAGACAATCATACTATCAAGAGGGA 60.688 40.741 0.00 0.00 0.00 4.20
5236 6481 7.296628 AGACAATCATACTATCAAGAGGGAC 57.703 40.000 0.00 0.00 0.00 4.46
5237 6482 6.841229 AGACAATCATACTATCAAGAGGGACA 59.159 38.462 0.00 0.00 0.00 4.02
5238 6483 6.821388 ACAATCATACTATCAAGAGGGACAC 58.179 40.000 0.00 0.00 0.00 3.67
5239 6484 6.384015 ACAATCATACTATCAAGAGGGACACA 59.616 38.462 0.00 0.00 0.00 3.72
5240 6485 7.071698 ACAATCATACTATCAAGAGGGACACAT 59.928 37.037 0.00 0.00 0.00 3.21
5241 6486 6.410942 TCATACTATCAAGAGGGACACATG 57.589 41.667 0.00 0.00 0.00 3.21
5242 6487 3.550437 ACTATCAAGAGGGACACATGC 57.450 47.619 0.00 0.00 0.00 4.06
5243 6488 2.840038 ACTATCAAGAGGGACACATGCA 59.160 45.455 0.00 0.00 0.00 3.96
5244 6489 2.885135 ATCAAGAGGGACACATGCAA 57.115 45.000 0.00 0.00 0.00 4.08
5245 6490 2.655090 TCAAGAGGGACACATGCAAA 57.345 45.000 0.00 0.00 0.00 3.68
5246 6491 2.942804 TCAAGAGGGACACATGCAAAA 58.057 42.857 0.00 0.00 0.00 2.44
5247 6492 2.886523 TCAAGAGGGACACATGCAAAAG 59.113 45.455 0.00 0.00 0.00 2.27
5248 6493 2.886523 CAAGAGGGACACATGCAAAAGA 59.113 45.455 0.00 0.00 0.00 2.52
5249 6494 3.446442 AGAGGGACACATGCAAAAGAT 57.554 42.857 0.00 0.00 0.00 2.40
5250 6495 3.087031 AGAGGGACACATGCAAAAGATG 58.913 45.455 0.00 0.00 0.00 2.90
5251 6496 2.821969 GAGGGACACATGCAAAAGATGT 59.178 45.455 0.00 0.00 34.24 3.06
5252 6497 3.233507 AGGGACACATGCAAAAGATGTT 58.766 40.909 0.00 0.00 31.46 2.71
5253 6498 4.406456 AGGGACACATGCAAAAGATGTTA 58.594 39.130 0.00 0.00 31.46 2.41
5254 6499 4.460382 AGGGACACATGCAAAAGATGTTAG 59.540 41.667 0.00 0.00 31.46 2.34
5255 6500 4.380867 GGGACACATGCAAAAGATGTTAGG 60.381 45.833 0.00 0.00 31.46 2.69
5256 6501 4.218417 GGACACATGCAAAAGATGTTAGGT 59.782 41.667 0.00 0.00 31.46 3.08
5257 6502 5.278957 GGACACATGCAAAAGATGTTAGGTT 60.279 40.000 0.00 0.00 31.46 3.50
5258 6503 5.531634 ACACATGCAAAAGATGTTAGGTTG 58.468 37.500 0.00 0.00 31.46 3.77
5259 6504 5.301551 ACACATGCAAAAGATGTTAGGTTGA 59.698 36.000 0.00 0.00 31.46 3.18
5260 6505 6.183360 ACACATGCAAAAGATGTTAGGTTGAA 60.183 34.615 0.00 0.00 31.46 2.69
5261 6506 6.144402 CACATGCAAAAGATGTTAGGTTGAAC 59.856 38.462 0.00 0.00 31.46 3.18
5262 6507 6.040842 ACATGCAAAAGATGTTAGGTTGAACT 59.959 34.615 0.00 0.00 29.39 3.01
5263 6508 6.072112 TGCAAAAGATGTTAGGTTGAACTC 57.928 37.500 0.00 0.00 0.00 3.01
5264 6509 5.009610 TGCAAAAGATGTTAGGTTGAACTCC 59.990 40.000 0.00 0.00 0.00 3.85
5265 6510 5.009610 GCAAAAGATGTTAGGTTGAACTCCA 59.990 40.000 0.00 0.00 0.00 3.86
5266 6511 6.460953 GCAAAAGATGTTAGGTTGAACTCCAA 60.461 38.462 0.00 0.00 0.00 3.53
5267 6512 6.884280 AAAGATGTTAGGTTGAACTCCAAG 57.116 37.500 0.00 0.00 35.03 3.61
5268 6513 5.568620 AGATGTTAGGTTGAACTCCAAGT 57.431 39.130 0.00 0.00 35.03 3.16
5269 6514 6.681729 AGATGTTAGGTTGAACTCCAAGTA 57.318 37.500 0.00 0.00 35.03 2.24
5270 6515 7.074653 AGATGTTAGGTTGAACTCCAAGTAA 57.925 36.000 0.00 0.00 35.03 2.24
5271 6516 7.514721 AGATGTTAGGTTGAACTCCAAGTAAA 58.485 34.615 0.00 0.00 35.03 2.01
5272 6517 7.661847 AGATGTTAGGTTGAACTCCAAGTAAAG 59.338 37.037 0.00 0.00 35.03 1.85
5273 6518 6.891388 TGTTAGGTTGAACTCCAAGTAAAGA 58.109 36.000 0.00 0.00 35.03 2.52
5274 6519 7.514721 TGTTAGGTTGAACTCCAAGTAAAGAT 58.485 34.615 0.00 0.00 35.03 2.40
5275 6520 7.660208 TGTTAGGTTGAACTCCAAGTAAAGATC 59.340 37.037 0.00 0.00 35.03 2.75
5276 6521 6.187727 AGGTTGAACTCCAAGTAAAGATCA 57.812 37.500 0.00 0.00 35.03 2.92
5277 6522 6.784031 AGGTTGAACTCCAAGTAAAGATCAT 58.216 36.000 0.00 0.00 35.03 2.45
5278 6523 6.881602 AGGTTGAACTCCAAGTAAAGATCATC 59.118 38.462 0.00 0.00 35.03 2.92
5279 6524 6.655003 GGTTGAACTCCAAGTAAAGATCATCA 59.345 38.462 0.00 0.00 35.03 3.07
5280 6525 7.174946 GGTTGAACTCCAAGTAAAGATCATCAA 59.825 37.037 0.00 0.00 35.03 2.57
5281 6526 7.672983 TGAACTCCAAGTAAAGATCATCAAC 57.327 36.000 0.00 0.00 0.00 3.18
5282 6527 6.655003 TGAACTCCAAGTAAAGATCATCAACC 59.345 38.462 0.00 0.00 0.00 3.77
5283 6528 5.501156 ACTCCAAGTAAAGATCATCAACCC 58.499 41.667 0.00 0.00 0.00 4.11
5284 6529 5.014123 ACTCCAAGTAAAGATCATCAACCCA 59.986 40.000 0.00 0.00 0.00 4.51
5285 6530 5.886609 TCCAAGTAAAGATCATCAACCCAA 58.113 37.500 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.761409 TGGTCATATTTGTTGTGAGCTTAATC 58.239 34.615 0.00 0.00 42.50 1.75
32 33 1.209019 AGCTATCCACTGAAGCACTGG 59.791 52.381 0.00 0.00 38.75 4.00
87 90 6.491062 TCTGTGATGGTTTCTCAACATGAATT 59.509 34.615 0.00 0.00 34.15 2.17
97 100 6.279882 CCTAGAGATTCTGTGATGGTTTCTC 58.720 44.000 0.00 0.00 0.00 2.87
103 106 5.069648 TGTTAGCCTAGAGATTCTGTGATGG 59.930 44.000 0.00 0.00 0.00 3.51
107 110 7.672983 TTTTTGTTAGCCTAGAGATTCTGTG 57.327 36.000 0.00 0.00 0.00 3.66
111 114 9.785982 AGGATATTTTTGTTAGCCTAGAGATTC 57.214 33.333 0.00 0.00 33.78 2.52
117 122 7.939588 AGCCTAAGGATATTTTTGTTAGCCTAG 59.060 37.037 0.00 0.00 34.43 3.02
120 125 6.773200 AGAGCCTAAGGATATTTTTGTTAGCC 59.227 38.462 0.00 0.00 0.00 3.93
142 147 3.577667 CTTGAGAACTCAGCACTCAGAG 58.422 50.000 4.72 0.00 40.82 3.35
146 151 2.160822 TGCTTGAGAACTCAGCACTC 57.839 50.000 17.73 0.00 41.13 3.51
147 152 2.627515 TTGCTTGAGAACTCAGCACT 57.372 45.000 19.81 0.00 40.59 4.40
148 153 3.501445 AGAATTGCTTGAGAACTCAGCAC 59.499 43.478 19.81 13.09 40.59 4.40
149 154 3.748083 AGAATTGCTTGAGAACTCAGCA 58.252 40.909 17.73 17.73 41.13 4.41
150 155 5.869753 TTAGAATTGCTTGAGAACTCAGC 57.130 39.130 14.46 14.46 41.13 4.26
151 156 9.985318 CTTAATTAGAATTGCTTGAGAACTCAG 57.015 33.333 4.72 1.85 41.13 3.35
208 219 4.451150 CTCCGGGCACTGCGCTTA 62.451 66.667 9.73 3.31 41.91 3.09
367 378 4.778415 CTCCTCACGGTGGTCGCG 62.778 72.222 8.50 0.00 43.89 5.87
723 736 4.918037 GACACGTGTCGAGGAATTAGTAT 58.082 43.478 31.03 0.00 35.12 2.12
866 885 0.317603 CGAATTACCTCGGATCGCGT 60.318 55.000 5.77 0.00 35.14 6.01
868 887 1.406447 GTCGAATTACCTCGGATCGC 58.594 55.000 0.00 0.00 39.35 4.58
933 952 2.412089 AGCAACGATTACAGCGAGAAAC 59.588 45.455 0.00 0.00 0.00 2.78
951 970 1.536766 CAGGAAATTCACGAAGCAGCA 59.463 47.619 0.00 0.00 0.00 4.41
952 971 1.806542 TCAGGAAATTCACGAAGCAGC 59.193 47.619 0.00 0.00 0.00 5.25
953 972 3.730061 GCATCAGGAAATTCACGAAGCAG 60.730 47.826 6.33 0.00 0.00 4.24
1041 1063 3.519930 GGCGAGGTCGAGGTCTCC 61.520 72.222 2.94 0.00 43.02 3.71
1176 1210 4.094590 AGAACAGACAATACGACGTCCTAG 59.905 45.833 10.58 0.00 32.33 3.02
1177 1211 4.005650 AGAACAGACAATACGACGTCCTA 58.994 43.478 10.58 3.05 32.33 2.94
1178 1212 2.818432 AGAACAGACAATACGACGTCCT 59.182 45.455 10.58 0.34 32.33 3.85
1180 1214 3.979495 ACAAGAACAGACAATACGACGTC 59.021 43.478 2.43 5.18 0.00 4.34
1181 1215 3.734231 CACAAGAACAGACAATACGACGT 59.266 43.478 5.52 5.52 0.00 4.34
1182 1216 3.978855 TCACAAGAACAGACAATACGACG 59.021 43.478 0.00 0.00 0.00 5.12
1183 1217 5.900339 TTCACAAGAACAGACAATACGAC 57.100 39.130 0.00 0.00 0.00 4.34
1184 1218 5.050363 GCTTTCACAAGAACAGACAATACGA 60.050 40.000 0.00 0.00 32.39 3.43
1188 1249 5.278660 GGATGCTTTCACAAGAACAGACAAT 60.279 40.000 0.00 0.00 32.39 2.71
1191 1252 3.364366 CGGATGCTTTCACAAGAACAGAC 60.364 47.826 0.00 0.00 32.39 3.51
1200 1261 1.079474 TAGCGCGGATGCTTTCACA 60.079 52.632 8.83 0.00 44.46 3.58
1201 1262 1.084370 AGTAGCGCGGATGCTTTCAC 61.084 55.000 8.83 0.00 44.46 3.18
1203 1264 0.806102 TCAGTAGCGCGGATGCTTTC 60.806 55.000 8.83 0.00 44.46 2.62
1204 1265 0.179073 ATCAGTAGCGCGGATGCTTT 60.179 50.000 8.83 0.00 44.46 3.51
1205 1266 0.179073 AATCAGTAGCGCGGATGCTT 60.179 50.000 8.83 0.00 44.46 3.91
1210 1281 0.806102 GCAGAAATCAGTAGCGCGGA 60.806 55.000 8.83 0.00 0.00 5.54
1234 1305 1.143684 AGCTCACCCACAAATCACAGT 59.856 47.619 0.00 0.00 0.00 3.55
1241 1312 1.064758 ACACTTCAGCTCACCCACAAA 60.065 47.619 0.00 0.00 0.00 2.83
1298 1369 3.306502 CCACCACCTACGTTGTACTCATT 60.307 47.826 0.00 0.00 0.00 2.57
1448 1519 6.350612 CCCCTGAAACACAAAACTAAAACTCA 60.351 38.462 0.00 0.00 0.00 3.41
1467 1538 3.628002 CCAATGACATGGAAATCCCCTGA 60.628 47.826 0.00 0.00 43.54 3.86
1480 1551 1.133598 CATCACTTGCGCCAATGACAT 59.866 47.619 4.18 0.00 0.00 3.06
1482 1553 0.799534 GCATCACTTGCGCCAATGAC 60.800 55.000 4.18 0.00 42.54 3.06
1484 1555 4.082192 GCATCACTTGCGCCAATG 57.918 55.556 4.18 0.00 42.54 2.82
1545 1616 1.068472 CACTTCTAAGCAGACGTCGGT 60.068 52.381 17.03 11.35 31.25 4.69
1580 1651 4.935808 ACGGATTCCATCACTGTTAAGAAC 59.064 41.667 3.09 0.00 0.00 3.01
1601 1672 6.379386 TCGGCAACTCTTAATCATCTATACG 58.621 40.000 0.00 0.00 0.00 3.06
1604 1675 7.445121 TCAATCGGCAACTCTTAATCATCTAT 58.555 34.615 0.00 0.00 0.00 1.98
1696 1767 6.311200 GGATCCAATGCTTCACACAATTAAAC 59.689 38.462 6.95 0.00 0.00 2.01
1893 1964 3.365264 CGAGCATGCAGTAGCTTTGAAAA 60.365 43.478 21.98 0.00 42.04 2.29
1962 2033 8.159447 ACCAACTATGACATACAAGCATATGAT 58.841 33.333 6.97 0.00 36.27 2.45
2065 2136 8.369424 TGCACATCCTACAACTACTTACTTAAA 58.631 33.333 0.00 0.00 0.00 1.52
2071 2142 5.731957 TGTGCACATCCTACAACTACTTA 57.268 39.130 17.42 0.00 0.00 2.24
2156 2227 6.183360 GGGATAATTTGTTTTAGACCTCAGGC 60.183 42.308 0.00 0.00 0.00 4.85
2195 2266 4.976116 GTGACTTGTGCCAAAGAACATAAC 59.024 41.667 2.72 0.00 0.00 1.89
2221 2292 7.254353 GGAATATTACTGCAGAACTAAACGGAC 60.254 40.741 23.35 1.04 0.00 4.79
2382 2453 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
2398 2475 3.644738 TCCAAATAATACTCCCTCCGTCC 59.355 47.826 0.00 0.00 0.00 4.79
2400 2477 4.905456 TGATCCAAATAATACTCCCTCCGT 59.095 41.667 0.00 0.00 0.00 4.69
2401 2478 5.483685 TGATCCAAATAATACTCCCTCCG 57.516 43.478 0.00 0.00 0.00 4.63
2402 2479 7.725844 ACAAATGATCCAAATAATACTCCCTCC 59.274 37.037 0.00 0.00 0.00 4.30
2403 2480 8.697507 ACAAATGATCCAAATAATACTCCCTC 57.302 34.615 0.00 0.00 0.00 4.30
2404 2481 9.492730 AAACAAATGATCCAAATAATACTCCCT 57.507 29.630 0.00 0.00 0.00 4.20
2788 2866 8.391106 CCGTCCTAAATTCTTGTCTTAGATTTG 58.609 37.037 0.00 0.00 0.00 2.32
2789 2867 8.319146 TCCGTCCTAAATTCTTGTCTTAGATTT 58.681 33.333 0.00 0.00 0.00 2.17
2790 2868 7.848128 TCCGTCCTAAATTCTTGTCTTAGATT 58.152 34.615 0.00 0.00 0.00 2.40
2791 2869 7.418025 CCTCCGTCCTAAATTCTTGTCTTAGAT 60.418 40.741 0.00 0.00 0.00 1.98
2792 2870 6.127423 CCTCCGTCCTAAATTCTTGTCTTAGA 60.127 42.308 0.00 0.00 0.00 2.10
2793 2871 6.043411 CCTCCGTCCTAAATTCTTGTCTTAG 58.957 44.000 0.00 0.00 0.00 2.18
2794 2872 5.105064 CCCTCCGTCCTAAATTCTTGTCTTA 60.105 44.000 0.00 0.00 0.00 2.10
2795 2873 4.323562 CCCTCCGTCCTAAATTCTTGTCTT 60.324 45.833 0.00 0.00 0.00 3.01
2796 2874 3.197983 CCCTCCGTCCTAAATTCTTGTCT 59.802 47.826 0.00 0.00 0.00 3.41
2797 2875 3.197116 TCCCTCCGTCCTAAATTCTTGTC 59.803 47.826 0.00 0.00 0.00 3.18
2798 2876 3.178865 TCCCTCCGTCCTAAATTCTTGT 58.821 45.455 0.00 0.00 0.00 3.16
2799 2877 3.197983 ACTCCCTCCGTCCTAAATTCTTG 59.802 47.826 0.00 0.00 0.00 3.02
2800 2878 3.451890 ACTCCCTCCGTCCTAAATTCTT 58.548 45.455 0.00 0.00 0.00 2.52
2801 2879 3.117552 ACTCCCTCCGTCCTAAATTCT 57.882 47.619 0.00 0.00 0.00 2.40
2802 2880 3.959449 AGTACTCCCTCCGTCCTAAATTC 59.041 47.826 0.00 0.00 0.00 2.17
2803 2881 3.991683 AGTACTCCCTCCGTCCTAAATT 58.008 45.455 0.00 0.00 0.00 1.82
2804 2882 3.684408 AGTACTCCCTCCGTCCTAAAT 57.316 47.619 0.00 0.00 0.00 1.40
2805 2883 3.525199 AGTAGTACTCCCTCCGTCCTAAA 59.475 47.826 0.00 0.00 0.00 1.85
2806 2884 3.118531 AGTAGTACTCCCTCCGTCCTAA 58.881 50.000 0.00 0.00 0.00 2.69
2807 2885 2.769209 AGTAGTACTCCCTCCGTCCTA 58.231 52.381 0.00 0.00 0.00 2.94
2808 2886 1.594129 AGTAGTACTCCCTCCGTCCT 58.406 55.000 0.00 0.00 0.00 3.85
2809 2887 2.433662 AAGTAGTACTCCCTCCGTCC 57.566 55.000 2.58 0.00 0.00 4.79
2810 2888 2.877786 GCTAAGTAGTACTCCCTCCGTC 59.122 54.545 2.58 0.00 0.00 4.79
2811 2889 2.240667 TGCTAAGTAGTACTCCCTCCGT 59.759 50.000 2.58 0.00 0.00 4.69
2812 2890 2.928334 TGCTAAGTAGTACTCCCTCCG 58.072 52.381 2.58 0.00 0.00 4.63
2813 2891 5.141910 AGAATGCTAAGTAGTACTCCCTCC 58.858 45.833 2.58 0.00 0.00 4.30
2814 2892 5.828859 TGAGAATGCTAAGTAGTACTCCCTC 59.171 44.000 2.58 4.06 0.00 4.30
2815 2893 5.767670 TGAGAATGCTAAGTAGTACTCCCT 58.232 41.667 2.58 0.00 0.00 4.20
2816 2894 6.127423 TGTTGAGAATGCTAAGTAGTACTCCC 60.127 42.308 2.58 0.00 0.00 4.30
2817 2895 6.864342 TGTTGAGAATGCTAAGTAGTACTCC 58.136 40.000 2.58 0.00 0.00 3.85
2818 2896 9.453325 GTATGTTGAGAATGCTAAGTAGTACTC 57.547 37.037 2.58 0.00 0.00 2.59
2819 2897 9.191479 AGTATGTTGAGAATGCTAAGTAGTACT 57.809 33.333 0.00 0.00 0.00 2.73
2917 2996 7.093814 TGGTAGTAACACCGTGAATAGTACAAT 60.094 37.037 21.83 0.00 41.88 2.71
3015 3094 3.940657 GCTCAACAGCACTAGCATAAG 57.059 47.619 0.00 0.00 46.06 1.73
3070 3149 8.690203 TCATATCCAAAGAAAAGTTCACTTGA 57.310 30.769 0.00 0.00 36.12 3.02
3321 3400 2.576615 ACTCTTTCTTGCCTCCACAAC 58.423 47.619 0.00 0.00 0.00 3.32
3322 3401 3.214328 GAACTCTTTCTTGCCTCCACAA 58.786 45.455 0.00 0.00 0.00 3.33
3556 3642 0.674581 CTTCATGCAGCCTGGTTCGA 60.675 55.000 0.00 0.00 0.00 3.71
3597 3683 2.291282 ACGATTGGTTATGGGCCTTGAA 60.291 45.455 4.53 0.00 0.00 2.69
3768 3877 1.415374 GCAACATGTGAGCTTGCAAG 58.585 50.000 22.44 22.44 40.09 4.01
3803 3912 8.715088 GCAGTTTTGAAATTTATTGCAGAGAAT 58.285 29.630 0.00 0.00 0.00 2.40
3832 3941 9.750125 AGTTCAAAGTTATTGAGAATGAAAACC 57.250 29.630 0.00 0.00 0.00 3.27
3965 4074 5.464722 CACTAGATTTCTCATGATTGTCCCG 59.535 44.000 0.00 0.00 0.00 5.14
4052 4161 5.046014 AGTTCCTAGAACAGAGCATCATGTT 60.046 40.000 9.92 0.00 38.52 2.71
4084 4193 2.264813 GCAAATTGCGAACATCATGCT 58.735 42.857 0.90 0.00 31.71 3.79
4088 4197 0.595588 ACGGCAAATTGCGAACATCA 59.404 45.000 12.15 0.00 46.21 3.07
4094 4203 0.167908 GATGTGACGGCAAATTGCGA 59.832 50.000 12.15 0.00 46.21 5.10
4095 4204 0.168788 AGATGTGACGGCAAATTGCG 59.831 50.000 12.15 9.74 46.21 4.85
4096 4205 1.987770 CAAGATGTGACGGCAAATTGC 59.012 47.619 9.87 9.87 44.08 3.56
4097 4206 2.598589 CCAAGATGTGACGGCAAATTG 58.401 47.619 0.00 0.00 0.00 2.32
4098 4207 1.067635 GCCAAGATGTGACGGCAAATT 60.068 47.619 0.00 0.00 44.25 1.82
4099 4208 0.527565 GCCAAGATGTGACGGCAAAT 59.472 50.000 0.00 0.00 44.25 2.32
4100 4209 1.956043 GCCAAGATGTGACGGCAAA 59.044 52.632 0.00 0.00 44.25 3.68
4101 4210 3.667087 GCCAAGATGTGACGGCAA 58.333 55.556 0.00 0.00 44.25 4.52
4103 4212 2.401766 CCTGCCAAGATGTGACGGC 61.402 63.158 0.00 0.00 45.11 5.68
4104 4213 1.746615 CCCTGCCAAGATGTGACGG 60.747 63.158 0.00 0.00 0.00 4.79
4105 4214 2.401766 GCCCTGCCAAGATGTGACG 61.402 63.158 0.00 0.00 0.00 4.35
4106 4215 2.401766 CGCCCTGCCAAGATGTGAC 61.402 63.158 0.00 0.00 0.00 3.67
4126 4235 1.093159 GCTCATCAGCCTCCACAAAG 58.907 55.000 0.00 0.00 40.14 2.77
4201 4310 0.531532 CAGCTACCCTCTTCCGCATG 60.532 60.000 0.00 0.00 0.00 4.06
4322 4431 1.770658 AGAAGAATGCCCGATCATCCA 59.229 47.619 0.00 0.00 0.00 3.41
4332 4441 6.681777 ACATTTCAAAGTACAGAAGAATGCC 58.318 36.000 0.00 0.00 0.00 4.40
4349 4459 7.326968 TGACAATAATAATGCGGACATTTCA 57.673 32.000 0.00 0.00 44.21 2.69
4353 4463 7.275888 ACATTGACAATAATAATGCGGACAT 57.724 32.000 0.00 0.00 38.49 3.06
4383 4493 7.713750 ACATACATACATACACACTCCTACAC 58.286 38.462 0.00 0.00 0.00 2.90
4487 4605 8.956426 ACTTCATACAGTTGAACAAGAAAAGAA 58.044 29.630 0.00 0.00 32.39 2.52
4488 4606 8.506168 ACTTCATACAGTTGAACAAGAAAAGA 57.494 30.769 0.00 0.00 32.39 2.52
4512 4631 6.246420 AGCCGCATCTTCATTTATTCATAC 57.754 37.500 0.00 0.00 0.00 2.39
4678 5897 7.938490 AGATACACATGCCATGTTTGTATCATA 59.062 33.333 30.31 9.41 43.97 2.15
4722 5941 2.457366 TCTTGAGGAGCGGAACTTTC 57.543 50.000 0.00 0.00 0.00 2.62
4730 5949 4.488126 TTTTTCAACATCTTGAGGAGCG 57.512 40.909 0.00 0.00 37.70 5.03
4794 6013 4.692328 AGATCTGGATCATAGTATGCCCA 58.308 43.478 17.57 17.57 40.22 5.36
4827 6046 0.690192 TTCTTCATGTCCTTCCGGCA 59.310 50.000 0.00 0.00 0.00 5.69
4836 6055 3.002791 TGGCACGATCTTTCTTCATGTC 58.997 45.455 0.00 0.00 0.00 3.06
4852 6071 1.075836 TATGTGGGGTGGTTGGCAC 59.924 57.895 0.00 0.00 0.00 5.01
4861 6080 2.224670 ACATTTGACGTGTATGTGGGGT 60.225 45.455 0.00 0.00 31.66 4.95
4973 6218 3.376636 TCACCGATTCCCAATAGTGGTA 58.623 45.455 8.66 0.00 44.30 3.25
4976 6221 6.710295 TCATTAATCACCGATTCCCAATAGTG 59.290 38.462 0.00 0.00 33.95 2.74
5001 6246 4.546674 AGTCCCCTTTTCAATTGTCTTGT 58.453 39.130 5.13 0.00 0.00 3.16
5002 6247 6.040391 TGTTAGTCCCCTTTTCAATTGTCTTG 59.960 38.462 5.13 0.00 0.00 3.02
5012 6257 8.349568 ACTTGATTAATGTTAGTCCCCTTTTC 57.650 34.615 0.00 0.00 0.00 2.29
5044 6289 8.454106 CGAACATGAGGACTAATTTCTTGAAAT 58.546 33.333 0.00 3.04 0.00 2.17
5045 6290 7.444183 ACGAACATGAGGACTAATTTCTTGAAA 59.556 33.333 0.00 0.00 0.00 2.69
5046 6291 6.934645 ACGAACATGAGGACTAATTTCTTGAA 59.065 34.615 0.00 0.00 0.00 2.69
5047 6292 6.368791 CACGAACATGAGGACTAATTTCTTGA 59.631 38.462 0.00 0.00 0.00 3.02
5048 6293 6.147821 ACACGAACATGAGGACTAATTTCTTG 59.852 38.462 0.00 0.00 0.00 3.02
5049 6294 6.147821 CACACGAACATGAGGACTAATTTCTT 59.852 38.462 0.00 0.00 0.00 2.52
5050 6295 5.639506 CACACGAACATGAGGACTAATTTCT 59.360 40.000 0.00 0.00 0.00 2.52
5051 6296 5.408604 ACACACGAACATGAGGACTAATTTC 59.591 40.000 0.00 0.00 0.00 2.17
5052 6297 5.305585 ACACACGAACATGAGGACTAATTT 58.694 37.500 0.00 0.00 0.00 1.82
5053 6298 4.894784 ACACACGAACATGAGGACTAATT 58.105 39.130 0.00 0.00 0.00 1.40
5054 6299 4.537135 ACACACGAACATGAGGACTAAT 57.463 40.909 0.00 0.00 0.00 1.73
5055 6300 5.456548 TTACACACGAACATGAGGACTAA 57.543 39.130 0.00 0.00 0.00 2.24
5056 6301 5.221283 TGTTTACACACGAACATGAGGACTA 60.221 40.000 0.00 0.00 31.30 2.59
5057 6302 4.056050 GTTTACACACGAACATGAGGACT 58.944 43.478 0.00 0.00 0.00 3.85
5058 6303 3.805422 TGTTTACACACGAACATGAGGAC 59.195 43.478 0.00 0.00 31.30 3.85
5059 6304 4.061357 TGTTTACACACGAACATGAGGA 57.939 40.909 0.00 0.00 31.30 3.71
5060 6305 4.450757 TGATGTTTACACACGAACATGAGG 59.549 41.667 0.00 0.00 44.17 3.86
5061 6306 5.590104 TGATGTTTACACACGAACATGAG 57.410 39.130 0.00 0.00 44.17 2.90
5062 6307 5.993106 TTGATGTTTACACACGAACATGA 57.007 34.783 0.00 0.00 44.17 3.07
5063 6308 5.568677 CCATTGATGTTTACACACGAACATG 59.431 40.000 6.46 0.00 44.17 3.21
5064 6309 5.240623 ACCATTGATGTTTACACACGAACAT 59.759 36.000 1.72 1.72 46.13 2.71
5065 6310 4.576873 ACCATTGATGTTTACACACGAACA 59.423 37.500 0.00 0.00 39.78 3.18
5066 6311 4.909305 CACCATTGATGTTTACACACGAAC 59.091 41.667 0.00 0.00 35.03 3.95
5067 6312 4.816925 TCACCATTGATGTTTACACACGAA 59.183 37.500 0.00 0.00 35.03 3.85
5068 6313 4.381411 TCACCATTGATGTTTACACACGA 58.619 39.130 0.00 0.00 35.03 4.35
5069 6314 4.711721 CTCACCATTGATGTTTACACACG 58.288 43.478 0.00 0.00 35.03 4.49
5070 6315 4.475944 GCTCACCATTGATGTTTACACAC 58.524 43.478 0.00 0.00 35.03 3.82
5071 6316 3.505680 GGCTCACCATTGATGTTTACACA 59.494 43.478 0.00 0.00 34.52 3.72
5072 6317 3.119495 GGGCTCACCATTGATGTTTACAC 60.119 47.826 0.00 0.00 39.85 2.90
5073 6318 3.088532 GGGCTCACCATTGATGTTTACA 58.911 45.455 0.00 0.00 39.85 2.41
5074 6319 3.356290 AGGGCTCACCATTGATGTTTAC 58.644 45.455 0.00 0.00 43.89 2.01
5075 6320 3.737559 AGGGCTCACCATTGATGTTTA 57.262 42.857 0.00 0.00 43.89 2.01
5076 6321 2.610438 AGGGCTCACCATTGATGTTT 57.390 45.000 0.00 0.00 43.89 2.83
5077 6322 3.959495 ATAGGGCTCACCATTGATGTT 57.041 42.857 0.00 0.00 43.89 2.71
5078 6323 3.959495 AATAGGGCTCACCATTGATGT 57.041 42.857 0.00 0.00 43.89 3.06
5079 6324 5.353938 CAAAAATAGGGCTCACCATTGATG 58.646 41.667 0.00 0.00 43.89 3.07
5080 6325 4.406649 CCAAAAATAGGGCTCACCATTGAT 59.593 41.667 0.00 0.00 43.89 2.57
5081 6326 3.768757 CCAAAAATAGGGCTCACCATTGA 59.231 43.478 0.00 0.00 43.89 2.57
5082 6327 3.515104 ACCAAAAATAGGGCTCACCATTG 59.485 43.478 0.00 0.00 43.89 2.82
5083 6328 3.790126 ACCAAAAATAGGGCTCACCATT 58.210 40.909 0.00 0.00 43.89 3.16
5084 6329 3.473113 ACCAAAAATAGGGCTCACCAT 57.527 42.857 0.00 0.00 43.89 3.55
5085 6330 2.990740 ACCAAAAATAGGGCTCACCA 57.009 45.000 0.00 0.00 43.89 4.17
5086 6331 3.193479 CAGAACCAAAAATAGGGCTCACC 59.807 47.826 0.00 0.00 40.67 4.02
5087 6332 3.367395 GCAGAACCAAAAATAGGGCTCAC 60.367 47.826 0.00 0.00 0.00 3.51
5088 6333 2.825532 GCAGAACCAAAAATAGGGCTCA 59.174 45.455 0.00 0.00 0.00 4.26
5089 6334 2.825532 TGCAGAACCAAAAATAGGGCTC 59.174 45.455 0.00 0.00 0.00 4.70
5090 6335 2.888212 TGCAGAACCAAAAATAGGGCT 58.112 42.857 0.00 0.00 0.00 5.19
5091 6336 3.006859 ACTTGCAGAACCAAAAATAGGGC 59.993 43.478 0.00 0.00 0.00 5.19
5092 6337 4.280677 TCACTTGCAGAACCAAAAATAGGG 59.719 41.667 0.00 0.00 0.00 3.53
5093 6338 5.452078 TCACTTGCAGAACCAAAAATAGG 57.548 39.130 0.00 0.00 0.00 2.57
5094 6339 7.951530 AAATCACTTGCAGAACCAAAAATAG 57.048 32.000 0.00 0.00 0.00 1.73
5095 6340 8.203485 AGAAAATCACTTGCAGAACCAAAAATA 58.797 29.630 0.00 0.00 0.00 1.40
5096 6341 7.049754 AGAAAATCACTTGCAGAACCAAAAAT 58.950 30.769 0.00 0.00 0.00 1.82
5097 6342 6.405538 AGAAAATCACTTGCAGAACCAAAAA 58.594 32.000 0.00 0.00 0.00 1.94
5098 6343 5.976458 AGAAAATCACTTGCAGAACCAAAA 58.024 33.333 0.00 0.00 0.00 2.44
5099 6344 5.596836 AGAAAATCACTTGCAGAACCAAA 57.403 34.783 0.00 0.00 0.00 3.28
5100 6345 5.451798 GGAAGAAAATCACTTGCAGAACCAA 60.452 40.000 0.00 0.00 36.12 3.67
5101 6346 4.037923 GGAAGAAAATCACTTGCAGAACCA 59.962 41.667 0.00 0.00 36.12 3.67
5102 6347 4.279420 AGGAAGAAAATCACTTGCAGAACC 59.721 41.667 0.00 0.00 37.98 3.62
5103 6348 5.444663 AGGAAGAAAATCACTTGCAGAAC 57.555 39.130 0.00 0.00 37.98 3.01
5104 6349 7.581213 TTTAGGAAGAAAATCACTTGCAGAA 57.419 32.000 0.00 0.00 37.98 3.02
5105 6350 7.667219 AGATTTAGGAAGAAAATCACTTGCAGA 59.333 33.333 10.26 0.00 42.98 4.26
5106 6351 7.824672 AGATTTAGGAAGAAAATCACTTGCAG 58.175 34.615 10.26 0.00 42.98 4.41
5107 6352 7.765695 AGATTTAGGAAGAAAATCACTTGCA 57.234 32.000 10.26 0.00 42.98 4.08
5108 6353 9.167311 TCTAGATTTAGGAAGAAAATCACTTGC 57.833 33.333 10.26 0.00 42.98 4.01
5110 6355 9.674068 GGTCTAGATTTAGGAAGAAAATCACTT 57.326 33.333 10.26 0.00 42.98 3.16
5111 6356 8.826765 TGGTCTAGATTTAGGAAGAAAATCACT 58.173 33.333 10.26 0.00 42.98 3.41
5112 6357 9.449719 TTGGTCTAGATTTAGGAAGAAAATCAC 57.550 33.333 10.26 1.78 42.98 3.06
5117 6362 8.793592 GCTTTTTGGTCTAGATTTAGGAAGAAA 58.206 33.333 0.00 0.00 0.00 2.52
5118 6363 7.942341 TGCTTTTTGGTCTAGATTTAGGAAGAA 59.058 33.333 0.00 0.00 0.00 2.52
5119 6364 7.458397 TGCTTTTTGGTCTAGATTTAGGAAGA 58.542 34.615 0.00 0.00 0.00 2.87
5120 6365 7.687941 TGCTTTTTGGTCTAGATTTAGGAAG 57.312 36.000 0.00 0.00 0.00 3.46
5121 6366 7.669722 ACATGCTTTTTGGTCTAGATTTAGGAA 59.330 33.333 0.00 0.00 0.00 3.36
5122 6367 7.175104 ACATGCTTTTTGGTCTAGATTTAGGA 58.825 34.615 0.00 0.00 0.00 2.94
5123 6368 7.396540 ACATGCTTTTTGGTCTAGATTTAGG 57.603 36.000 0.00 0.00 0.00 2.69
5140 6385 9.071276 CCCTCTGTATCAAAATATAACATGCTT 57.929 33.333 0.00 0.00 0.00 3.91
5141 6386 8.439971 TCCCTCTGTATCAAAATATAACATGCT 58.560 33.333 0.00 0.00 0.00 3.79
5142 6387 8.621532 TCCCTCTGTATCAAAATATAACATGC 57.378 34.615 0.00 0.00 0.00 4.06
5143 6388 9.784531 ACTCCCTCTGTATCAAAATATAACATG 57.215 33.333 0.00 0.00 0.00 3.21
5153 6398 9.144298 CCTATAAAGTACTCCCTCTGTATCAAA 57.856 37.037 0.00 0.00 0.00 2.69
5154 6399 8.287350 ACCTATAAAGTACTCCCTCTGTATCAA 58.713 37.037 0.00 0.00 0.00 2.57
5155 6400 7.823635 ACCTATAAAGTACTCCCTCTGTATCA 58.176 38.462 0.00 0.00 0.00 2.15
5156 6401 8.709272 AACCTATAAAGTACTCCCTCTGTATC 57.291 38.462 0.00 0.00 0.00 2.24
5157 6402 9.503369 AAAACCTATAAAGTACTCCCTCTGTAT 57.497 33.333 0.00 0.00 0.00 2.29
5158 6403 8.906238 AAAACCTATAAAGTACTCCCTCTGTA 57.094 34.615 0.00 0.00 0.00 2.74
5159 6404 7.809880 AAAACCTATAAAGTACTCCCTCTGT 57.190 36.000 0.00 0.00 0.00 3.41
5185 6430 9.868277 TGCACTTAATTCGGATTCAAATTAAAT 57.132 25.926 0.00 5.37 37.06 1.40
5186 6431 9.698309 TTGCACTTAATTCGGATTCAAATTAAA 57.302 25.926 0.00 0.00 37.06 1.52
5187 6432 9.352784 CTTGCACTTAATTCGGATTCAAATTAA 57.647 29.630 0.00 12.14 35.84 1.40
5188 6433 8.735315 TCTTGCACTTAATTCGGATTCAAATTA 58.265 29.630 0.00 0.00 0.00 1.40
5189 6434 7.542130 GTCTTGCACTTAATTCGGATTCAAATT 59.458 33.333 0.00 0.00 0.00 1.82
5190 6435 7.029563 GTCTTGCACTTAATTCGGATTCAAAT 58.970 34.615 0.00 0.00 0.00 2.32
5191 6436 6.016693 TGTCTTGCACTTAATTCGGATTCAAA 60.017 34.615 0.00 0.00 0.00 2.69
5192 6437 5.471797 TGTCTTGCACTTAATTCGGATTCAA 59.528 36.000 0.00 0.00 0.00 2.69
5193 6438 5.000591 TGTCTTGCACTTAATTCGGATTCA 58.999 37.500 0.00 0.00 0.00 2.57
5194 6439 5.545658 TGTCTTGCACTTAATTCGGATTC 57.454 39.130 0.00 0.00 0.00 2.52
5195 6440 5.957842 TTGTCTTGCACTTAATTCGGATT 57.042 34.783 0.00 0.00 0.00 3.01
5196 6441 5.647658 TGATTGTCTTGCACTTAATTCGGAT 59.352 36.000 0.00 0.00 0.00 4.18
5197 6442 5.000591 TGATTGTCTTGCACTTAATTCGGA 58.999 37.500 0.00 0.00 0.00 4.55
5198 6443 5.295431 TGATTGTCTTGCACTTAATTCGG 57.705 39.130 0.00 0.00 0.00 4.30
5199 6444 7.688372 AGTATGATTGTCTTGCACTTAATTCG 58.312 34.615 0.00 0.00 0.00 3.34
5202 6447 9.836864 TGATAGTATGATTGTCTTGCACTTAAT 57.163 29.630 0.00 0.00 0.00 1.40
5203 6448 9.665719 TTGATAGTATGATTGTCTTGCACTTAA 57.334 29.630 0.00 0.00 0.00 1.85
5204 6449 9.317936 CTTGATAGTATGATTGTCTTGCACTTA 57.682 33.333 0.00 0.00 0.00 2.24
5205 6450 8.043113 TCTTGATAGTATGATTGTCTTGCACTT 58.957 33.333 0.00 0.00 0.00 3.16
5206 6451 7.559486 TCTTGATAGTATGATTGTCTTGCACT 58.441 34.615 0.00 0.00 0.00 4.40
5207 6452 7.042187 CCTCTTGATAGTATGATTGTCTTGCAC 60.042 40.741 0.00 0.00 0.00 4.57
5208 6453 6.988580 CCTCTTGATAGTATGATTGTCTTGCA 59.011 38.462 0.00 0.00 0.00 4.08
5209 6454 6.426328 CCCTCTTGATAGTATGATTGTCTTGC 59.574 42.308 0.00 0.00 0.00 4.01
5210 6455 7.655328 GTCCCTCTTGATAGTATGATTGTCTTG 59.345 40.741 0.00 0.00 0.00 3.02
5211 6456 7.345653 TGTCCCTCTTGATAGTATGATTGTCTT 59.654 37.037 0.00 0.00 0.00 3.01
5212 6457 6.841229 TGTCCCTCTTGATAGTATGATTGTCT 59.159 38.462 0.00 0.00 0.00 3.41
5213 6458 6.926272 GTGTCCCTCTTGATAGTATGATTGTC 59.074 42.308 0.00 0.00 0.00 3.18
5214 6459 6.384015 TGTGTCCCTCTTGATAGTATGATTGT 59.616 38.462 0.00 0.00 0.00 2.71
5215 6460 6.820335 TGTGTCCCTCTTGATAGTATGATTG 58.180 40.000 0.00 0.00 0.00 2.67
5216 6461 7.448420 CATGTGTCCCTCTTGATAGTATGATT 58.552 38.462 0.00 0.00 0.00 2.57
5217 6462 6.519721 GCATGTGTCCCTCTTGATAGTATGAT 60.520 42.308 0.00 0.00 0.00 2.45
5218 6463 5.221521 GCATGTGTCCCTCTTGATAGTATGA 60.222 44.000 0.00 0.00 0.00 2.15
5219 6464 4.993584 GCATGTGTCCCTCTTGATAGTATG 59.006 45.833 0.00 0.00 0.00 2.39
5220 6465 4.655649 TGCATGTGTCCCTCTTGATAGTAT 59.344 41.667 0.00 0.00 0.00 2.12
5221 6466 4.030216 TGCATGTGTCCCTCTTGATAGTA 58.970 43.478 0.00 0.00 0.00 1.82
5222 6467 2.840038 TGCATGTGTCCCTCTTGATAGT 59.160 45.455 0.00 0.00 0.00 2.12
5223 6468 3.548745 TGCATGTGTCCCTCTTGATAG 57.451 47.619 0.00 0.00 0.00 2.08
5224 6469 3.998913 TTGCATGTGTCCCTCTTGATA 57.001 42.857 0.00 0.00 0.00 2.15
5225 6470 2.885135 TTGCATGTGTCCCTCTTGAT 57.115 45.000 0.00 0.00 0.00 2.57
5226 6471 2.655090 TTTGCATGTGTCCCTCTTGA 57.345 45.000 0.00 0.00 0.00 3.02
5227 6472 2.886523 TCTTTTGCATGTGTCCCTCTTG 59.113 45.455 0.00 0.00 0.00 3.02
5228 6473 3.228188 TCTTTTGCATGTGTCCCTCTT 57.772 42.857 0.00 0.00 0.00 2.85
5229 6474 2.957402 TCTTTTGCATGTGTCCCTCT 57.043 45.000 0.00 0.00 0.00 3.69
5230 6475 2.821969 ACATCTTTTGCATGTGTCCCTC 59.178 45.455 0.00 0.00 33.04 4.30
5231 6476 2.880443 ACATCTTTTGCATGTGTCCCT 58.120 42.857 0.00 0.00 33.04 4.20
5232 6477 3.665745 AACATCTTTTGCATGTGTCCC 57.334 42.857 0.00 0.00 34.59 4.46
5233 6478 4.218417 ACCTAACATCTTTTGCATGTGTCC 59.782 41.667 0.00 0.00 34.59 4.02
5234 6479 5.376854 ACCTAACATCTTTTGCATGTGTC 57.623 39.130 0.00 0.00 34.59 3.67
5235 6480 5.301551 TCAACCTAACATCTTTTGCATGTGT 59.698 36.000 0.00 0.00 34.59 3.72
5236 6481 5.771469 TCAACCTAACATCTTTTGCATGTG 58.229 37.500 0.00 0.00 34.59 3.21
5237 6482 6.040842 AGTTCAACCTAACATCTTTTGCATGT 59.959 34.615 0.00 0.00 35.94 3.21
5238 6483 6.449698 AGTTCAACCTAACATCTTTTGCATG 58.550 36.000 0.00 0.00 0.00 4.06
5239 6484 6.294731 GGAGTTCAACCTAACATCTTTTGCAT 60.295 38.462 0.00 0.00 0.00 3.96
5240 6485 5.009610 GGAGTTCAACCTAACATCTTTTGCA 59.990 40.000 0.00 0.00 0.00 4.08
5241 6486 5.009610 TGGAGTTCAACCTAACATCTTTTGC 59.990 40.000 0.00 0.00 0.00 3.68
5242 6487 6.633500 TGGAGTTCAACCTAACATCTTTTG 57.367 37.500 0.00 0.00 0.00 2.44
5243 6488 6.833933 ACTTGGAGTTCAACCTAACATCTTTT 59.166 34.615 0.00 0.00 0.00 2.27
5244 6489 6.365520 ACTTGGAGTTCAACCTAACATCTTT 58.634 36.000 0.00 0.00 0.00 2.52
5245 6490 5.941788 ACTTGGAGTTCAACCTAACATCTT 58.058 37.500 0.00 0.00 0.00 2.40
5246 6491 5.568620 ACTTGGAGTTCAACCTAACATCT 57.431 39.130 0.00 0.00 0.00 2.90
5247 6492 7.660208 TCTTTACTTGGAGTTCAACCTAACATC 59.340 37.037 0.00 0.00 0.00 3.06
5248 6493 7.514721 TCTTTACTTGGAGTTCAACCTAACAT 58.485 34.615 0.00 0.00 0.00 2.71
5249 6494 6.891388 TCTTTACTTGGAGTTCAACCTAACA 58.109 36.000 0.00 0.00 0.00 2.41
5250 6495 7.660208 TGATCTTTACTTGGAGTTCAACCTAAC 59.340 37.037 0.00 0.00 0.00 2.34
5251 6496 7.741785 TGATCTTTACTTGGAGTTCAACCTAA 58.258 34.615 0.00 0.00 0.00 2.69
5252 6497 7.311092 TGATCTTTACTTGGAGTTCAACCTA 57.689 36.000 0.00 0.00 0.00 3.08
5253 6498 6.187727 TGATCTTTACTTGGAGTTCAACCT 57.812 37.500 0.00 0.00 0.00 3.50
5254 6499 6.655003 TGATGATCTTTACTTGGAGTTCAACC 59.345 38.462 0.00 0.00 0.00 3.77
5255 6500 7.672983 TGATGATCTTTACTTGGAGTTCAAC 57.327 36.000 0.00 0.00 0.00 3.18
5256 6501 7.174946 GGTTGATGATCTTTACTTGGAGTTCAA 59.825 37.037 0.00 0.00 0.00 2.69
5257 6502 6.655003 GGTTGATGATCTTTACTTGGAGTTCA 59.345 38.462 0.00 0.00 0.00 3.18
5258 6503 6.094186 GGGTTGATGATCTTTACTTGGAGTTC 59.906 42.308 0.00 0.00 0.00 3.01
5259 6504 5.946377 GGGTTGATGATCTTTACTTGGAGTT 59.054 40.000 0.00 0.00 0.00 3.01
5260 6505 5.014123 TGGGTTGATGATCTTTACTTGGAGT 59.986 40.000 0.00 0.00 0.00 3.85
5261 6506 5.500234 TGGGTTGATGATCTTTACTTGGAG 58.500 41.667 0.00 0.00 0.00 3.86
5262 6507 5.512942 TGGGTTGATGATCTTTACTTGGA 57.487 39.130 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.