Multiple sequence alignment - TraesCS1A01G052500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G052500 chr1A 100.000 2737 0 0 1 2737 34533328 34536064 0.000000e+00 5055.0
1 TraesCS1A01G052500 chr1A 87.500 432 45 6 2310 2736 34859692 34860119 8.810000e-135 490.0
2 TraesCS1A01G052500 chr1A 87.269 432 46 7 2310 2736 34707190 34707617 4.100000e-133 484.0
3 TraesCS1A01G052500 chr1A 86.998 423 47 6 2317 2736 34885248 34885665 1.150000e-128 470.0
4 TraesCS1A01G052500 chr1A 91.135 282 24 1 1482 1762 34705553 34705834 5.530000e-102 381.0
5 TraesCS1A01G052500 chr1A 86.275 357 42 4 1451 1805 34857828 34858179 5.530000e-102 381.0
6 TraesCS1A01G052500 chr1A 84.319 389 42 13 543 917 34851163 34851546 2.000000e-96 363.0
7 TraesCS1A01G052500 chr1A 90.110 273 27 0 1483 1755 34878502 34878774 3.350000e-94 355.0
8 TraesCS1A01G052500 chr1A 80.405 444 39 27 782 1178 34877715 34878157 7.410000e-76 294.0
9 TraesCS1A01G052500 chr1A 93.684 190 11 1 1215 1404 34705241 34705429 1.600000e-72 283.0
10 TraesCS1A01G052500 chr1A 95.238 168 8 0 1 168 555695636 555695803 1.620000e-67 267.0
11 TraesCS1A01G052500 chr1A 95.238 168 8 0 1 168 577765764 577765931 1.620000e-67 267.0
12 TraesCS1A01G052500 chr1A 91.444 187 16 0 992 1178 34704957 34705143 9.720000e-65 257.0
13 TraesCS1A01G052500 chr1A 86.800 250 10 12 1220 1447 34857546 34857794 9.720000e-65 257.0
14 TraesCS1A01G052500 chr1A 88.770 187 21 0 992 1178 34857251 34857437 2.120000e-56 230.0
15 TraesCS1A01G052500 chr1A 96.842 95 3 0 1310 1404 34858875 34858969 2.820000e-35 159.0
16 TraesCS1A01G052500 chr1D 94.537 1446 41 7 642 2059 35786174 35787609 0.000000e+00 2198.0
17 TraesCS1A01G052500 chr1D 91.016 679 48 4 2061 2736 35787660 35788328 0.000000e+00 904.0
18 TraesCS1A01G052500 chr1D 88.158 608 52 11 1215 1803 35870520 35871126 0.000000e+00 706.0
19 TraesCS1A01G052500 chr1D 82.724 602 71 20 1217 1794 35815659 35816251 3.150000e-139 505.0
20 TraesCS1A01G052500 chr1D 81.014 690 67 24 543 1178 35869748 35870427 8.810000e-135 490.0
21 TraesCS1A01G052500 chr1D 87.736 424 42 7 2317 2736 35926293 35926710 1.140000e-133 486.0
22 TraesCS1A01G052500 chr1D 82.639 576 72 14 1215 1771 35917233 35917799 4.100000e-133 484.0
23 TraesCS1A01G052500 chr1D 91.848 184 14 1 981 1164 35815370 35815552 3.500000e-64 255.0
24 TraesCS1A01G052500 chr1D 89.560 182 18 1 992 1172 35907939 35908120 2.120000e-56 230.0
25 TraesCS1A01G052500 chr1B 86.005 836 78 26 998 1803 54964000 54964826 0.000000e+00 859.0
26 TraesCS1A01G052500 chr1B 89.706 680 56 5 2061 2736 54972687 54973356 0.000000e+00 856.0
27 TraesCS1A01G052500 chr1B 85.885 836 79 26 998 1803 55007285 55008111 0.000000e+00 854.0
28 TraesCS1A01G052500 chr1B 88.679 371 40 2 2367 2736 55011516 55011885 4.160000e-123 451.0
29 TraesCS1A01G052500 chr1B 91.221 262 19 1 1802 2063 55010979 55011236 1.210000e-93 353.0
30 TraesCS1A01G052500 chr1B 90.385 260 21 1 1802 2061 54972383 54972638 3.380000e-89 339.0
31 TraesCS1A01G052500 chr1B 90.244 246 12 3 2061 2304 55011283 55011518 7.360000e-81 311.0
32 TraesCS1A01G052500 chr1B 78.182 385 33 14 561 914 55006799 55007163 5.980000e-47 198.0
33 TraesCS1A01G052500 chr1B 77.922 385 34 14 561 914 54963514 54963878 2.780000e-45 193.0
34 TraesCS1A01G052500 chr2A 89.177 462 22 14 1 459 779330395 779329959 3.980000e-153 551.0
35 TraesCS1A01G052500 chr2A 94.118 85 4 1 460 544 161284670 161284753 7.960000e-26 128.0
36 TraesCS1A01G052500 chr2A 93.023 86 6 0 460 545 24647884 24647799 2.860000e-25 126.0
37 TraesCS1A01G052500 chr7D 84.120 466 59 13 1 459 20260655 20260198 1.160000e-118 436.0
38 TraesCS1A01G052500 chr4A 92.459 305 17 4 164 464 621423414 621423112 5.410000e-117 431.0
39 TraesCS1A01G052500 chr4A 83.084 467 64 12 1 459 685740662 685741121 7.050000e-111 411.0
40 TraesCS1A01G052500 chr4A 95.833 168 7 0 1 168 621425629 621425462 3.470000e-69 272.0
41 TraesCS1A01G052500 chr4A 94.643 168 9 0 1 168 617932594 617932427 7.520000e-66 261.0
42 TraesCS1A01G052500 chr4A 91.566 166 14 0 992 1157 536859465 536859630 2.120000e-56 230.0
43 TraesCS1A01G052500 chr4A 93.023 86 6 0 460 545 405861247 405861162 2.860000e-25 126.0
44 TraesCS1A01G052500 chr4A 92.135 89 6 1 460 548 66896557 66896470 1.030000e-24 124.0
45 TraesCS1A01G052500 chr4A 91.667 60 4 1 856 914 521612719 521612778 6.280000e-12 82.4
46 TraesCS1A01G052500 chr4A 91.667 60 4 1 856 914 536859296 536859355 6.280000e-12 82.4
47 TraesCS1A01G052500 chrUn 83.871 465 59 13 3 460 28690791 28690336 1.950000e-116 429.0
48 TraesCS1A01G052500 chrUn 81.279 438 65 9 2310 2734 10644994 10644561 3.380000e-89 339.0
49 TraesCS1A01G052500 chrUn 94.118 85 5 0 461 545 415868313 415868397 2.210000e-26 130.0
50 TraesCS1A01G052500 chrUn 94.118 85 5 0 461 545 451796933 451797017 2.210000e-26 130.0
51 TraesCS1A01G052500 chrUn 94.118 85 5 0 461 545 479941989 479942073 2.210000e-26 130.0
52 TraesCS1A01G052500 chrUn 93.023 86 6 0 460 545 417217117 417217202 2.860000e-25 126.0
53 TraesCS1A01G052500 chr5A 82.692 468 64 13 1 459 146499434 146499893 1.530000e-107 399.0
54 TraesCS1A01G052500 chr5A 82.013 467 64 16 3 459 94097195 94096739 1.990000e-101 379.0
55 TraesCS1A01G052500 chr5A 94.186 86 4 1 460 545 31116800 31116716 2.210000e-26 130.0
56 TraesCS1A01G052500 chr7B 90.397 302 23 5 161 459 23303719 23304017 2.560000e-105 392.0
57 TraesCS1A01G052500 chr7B 89.439 303 27 4 161 461 37119986 37120285 7.150000e-101 377.0
58 TraesCS1A01G052500 chr7B 95.833 168 6 1 1 168 37118020 37117854 1.250000e-68 270.0
59 TraesCS1A01G052500 chr7B 94.048 168 10 0 1 168 37114372 37114539 3.500000e-64 255.0
60 TraesCS1A01G052500 chr7A 82.090 469 64 16 1 459 193382251 193381793 1.540000e-102 383.0
61 TraesCS1A01G052500 chr2B 83.832 334 46 6 2404 2734 550397949 550397621 7.360000e-81 311.0
62 TraesCS1A01G052500 chr2B 94.643 168 9 0 1 168 34337490 34337657 7.520000e-66 261.0
63 TraesCS1A01G052500 chr2B 94.048 168 10 0 1 168 786783838 786784005 3.500000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G052500 chr1A 34533328 34536064 2736 False 5055.00 5055 100.0000 1 2737 1 chr1A.!!$F1 2736
1 TraesCS1A01G052500 chr1A 34704957 34707617 2660 False 351.25 484 90.8830 992 2736 4 chr1A.!!$F6 1744
2 TraesCS1A01G052500 chr1A 34877715 34878774 1059 False 324.50 355 85.2575 782 1755 2 chr1A.!!$F8 973
3 TraesCS1A01G052500 chr1A 34857251 34860119 2868 False 303.40 490 89.2374 992 2736 5 chr1A.!!$F7 1744
4 TraesCS1A01G052500 chr1D 35786174 35788328 2154 False 1551.00 2198 92.7765 642 2736 2 chr1D.!!$F4 2094
5 TraesCS1A01G052500 chr1D 35869748 35871126 1378 False 598.00 706 84.5860 543 1803 2 chr1D.!!$F6 1260
6 TraesCS1A01G052500 chr1D 35917233 35917799 566 False 484.00 484 82.6390 1215 1771 1 chr1D.!!$F2 556
7 TraesCS1A01G052500 chr1D 35815370 35816251 881 False 380.00 505 87.2860 981 1794 2 chr1D.!!$F5 813
8 TraesCS1A01G052500 chr1B 54972383 54973356 973 False 597.50 856 90.0455 1802 2736 2 chr1B.!!$F2 934
9 TraesCS1A01G052500 chr1B 54963514 54964826 1312 False 526.00 859 81.9635 561 1803 2 chr1B.!!$F1 1242
10 TraesCS1A01G052500 chr1B 55006799 55011885 5086 False 433.40 854 86.8422 561 2736 5 chr1B.!!$F3 2175
11 TraesCS1A01G052500 chr4A 621423112 621425629 2517 True 351.50 431 94.1460 1 464 2 chr4A.!!$R4 463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 2529 0.042967 GCGCTGTTTGTCGCTATAGC 60.043 55.0 15.09 15.09 46.92 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 7306 0.314935 ACAAGCACGGCAAATTCTGG 59.685 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.495572 CTTTTGATATCTATGACCCTAGAAACC 57.504 37.037 3.98 0.00 31.75 3.27
129 130 8.259049 ACAATCTTGTATTCGAAACGGATAAA 57.741 30.769 0.00 0.00 40.16 1.40
130 131 8.723311 ACAATCTTGTATTCGAAACGGATAAAA 58.277 29.630 0.00 0.00 40.16 1.52
134 135 8.937884 TCTTGTATTCGAAACGGATAAAATTGA 58.062 29.630 0.00 0.00 28.54 2.57
218 2271 1.002773 GGAGGCTTGGAGGTTCGTTAA 59.997 52.381 0.00 0.00 0.00 2.01
225 2278 4.495844 GCTTGGAGGTTCGTTAACATATGC 60.496 45.833 6.39 0.00 37.34 3.14
230 2283 6.879993 TGGAGGTTCGTTAACATATGCTTTAA 59.120 34.615 6.39 0.00 37.34 1.52
286 2340 6.441093 TTGATTTAGACATGAAGCATGACC 57.559 37.500 13.79 5.66 43.81 4.02
304 2358 6.318648 GCATGACCTTGTTATTTATGACCTGA 59.681 38.462 0.00 0.00 0.00 3.86
353 2407 7.891561 ACCACTGTTTATTATAGCTTTGCAAA 58.108 30.769 12.14 12.14 0.00 3.68
464 2521 3.723348 GGACCGGCGCTGTTTGTC 61.723 66.667 16.49 14.90 0.00 3.18
465 2522 4.072088 GACCGGCGCTGTTTGTCG 62.072 66.667 16.49 4.05 0.00 4.35
472 2529 0.042967 GCGCTGTTTGTCGCTATAGC 60.043 55.000 15.09 15.09 46.92 2.97
473 2530 0.577269 CGCTGTTTGTCGCTATAGCC 59.423 55.000 19.00 6.59 37.91 3.93
474 2531 0.938008 GCTGTTTGTCGCTATAGCCC 59.062 55.000 19.00 10.28 37.91 5.19
475 2532 1.583054 CTGTTTGTCGCTATAGCCCC 58.417 55.000 19.00 9.93 37.91 5.80
476 2533 0.179094 TGTTTGTCGCTATAGCCCCG 60.179 55.000 19.00 5.48 37.91 5.73
477 2534 0.179092 GTTTGTCGCTATAGCCCCGT 60.179 55.000 19.00 0.00 37.91 5.28
478 2535 0.538118 TTTGTCGCTATAGCCCCGTT 59.462 50.000 19.00 0.00 37.91 4.44
479 2536 1.401761 TTGTCGCTATAGCCCCGTTA 58.598 50.000 19.00 0.00 37.91 3.18
480 2537 1.624336 TGTCGCTATAGCCCCGTTAT 58.376 50.000 19.00 0.00 37.91 1.89
481 2538 2.794103 TGTCGCTATAGCCCCGTTATA 58.206 47.619 19.00 0.00 37.91 0.98
482 2539 2.751259 TGTCGCTATAGCCCCGTTATAG 59.249 50.000 19.00 1.81 37.91 1.31
483 2540 1.747355 TCGCTATAGCCCCGTTATAGC 59.253 52.381 19.00 14.17 45.36 2.97
484 2541 1.202382 CGCTATAGCCCCGTTATAGCC 60.202 57.143 19.00 5.17 45.74 3.93
485 2542 1.138464 GCTATAGCCCCGTTATAGCCC 59.862 57.143 14.13 0.00 44.10 5.19
486 2543 2.463752 CTATAGCCCCGTTATAGCCCA 58.536 52.381 0.00 0.00 0.00 5.36
487 2544 1.276622 ATAGCCCCGTTATAGCCCAG 58.723 55.000 0.00 0.00 0.00 4.45
488 2545 1.477685 TAGCCCCGTTATAGCCCAGC 61.478 60.000 0.00 0.00 0.00 4.85
489 2546 2.819284 GCCCCGTTATAGCCCAGCT 61.819 63.158 0.00 0.00 43.41 4.24
490 2547 1.477685 GCCCCGTTATAGCCCAGCTA 61.478 60.000 0.00 0.00 45.55 3.32
511 2568 6.209361 GCTATAGCTGTTTTTAAGGATTGCC 58.791 40.000 17.75 0.00 38.21 4.52
512 2569 3.575965 AGCTGTTTTTAAGGATTGCCG 57.424 42.857 0.00 0.00 39.96 5.69
513 2570 1.992667 GCTGTTTTTAAGGATTGCCGC 59.007 47.619 0.00 0.00 39.96 6.53
514 2571 2.352715 GCTGTTTTTAAGGATTGCCGCT 60.353 45.455 0.00 0.00 39.96 5.52
515 2572 3.119637 GCTGTTTTTAAGGATTGCCGCTA 60.120 43.478 0.00 0.00 39.96 4.26
516 2573 4.617298 GCTGTTTTTAAGGATTGCCGCTAA 60.617 41.667 0.00 0.00 39.96 3.09
517 2574 5.455056 TGTTTTTAAGGATTGCCGCTAAA 57.545 34.783 0.00 0.00 39.96 1.85
518 2575 6.031751 TGTTTTTAAGGATTGCCGCTAAAT 57.968 33.333 0.00 0.00 39.96 1.40
519 2576 5.866633 TGTTTTTAAGGATTGCCGCTAAATG 59.133 36.000 0.00 0.00 39.96 2.32
520 2577 5.652994 TTTTAAGGATTGCCGCTAAATGT 57.347 34.783 0.00 0.00 39.96 2.71
521 2578 4.893424 TTAAGGATTGCCGCTAAATGTC 57.107 40.909 0.00 0.00 39.96 3.06
522 2579 2.418368 AGGATTGCCGCTAAATGTCA 57.582 45.000 0.00 0.00 39.96 3.58
523 2580 2.936202 AGGATTGCCGCTAAATGTCAT 58.064 42.857 0.00 0.00 39.96 3.06
524 2581 4.085357 AGGATTGCCGCTAAATGTCATA 57.915 40.909 0.00 0.00 39.96 2.15
525 2582 4.067896 AGGATTGCCGCTAAATGTCATAG 58.932 43.478 0.00 0.00 39.96 2.23
526 2583 3.365364 GGATTGCCGCTAAATGTCATAGC 60.365 47.826 0.00 0.00 41.85 2.97
527 2584 1.593196 TGCCGCTAAATGTCATAGCC 58.407 50.000 2.63 0.00 42.18 3.93
528 2585 0.875059 GCCGCTAAATGTCATAGCCC 59.125 55.000 2.63 0.00 42.18 5.19
529 2586 1.148310 CCGCTAAATGTCATAGCCCG 58.852 55.000 2.63 0.00 42.18 6.13
530 2587 0.512952 CGCTAAATGTCATAGCCCGC 59.487 55.000 2.63 0.00 42.18 6.13
531 2588 1.873903 CGCTAAATGTCATAGCCCGCT 60.874 52.381 2.63 0.00 42.18 5.52
532 2589 2.609491 CGCTAAATGTCATAGCCCGCTA 60.609 50.000 0.00 0.00 42.18 4.26
533 2590 3.600388 GCTAAATGTCATAGCCCGCTAT 58.400 45.455 3.31 3.31 39.87 2.97
534 2591 4.003648 GCTAAATGTCATAGCCCGCTATT 58.996 43.478 6.48 0.00 39.87 1.73
535 2592 4.455877 GCTAAATGTCATAGCCCGCTATTT 59.544 41.667 6.48 3.52 39.87 1.40
536 2593 5.642063 GCTAAATGTCATAGCCCGCTATTTA 59.358 40.000 6.48 4.42 39.87 1.40
537 2594 6.148811 GCTAAATGTCATAGCCCGCTATTTAA 59.851 38.462 6.48 0.00 39.87 1.52
538 2595 6.952773 AAATGTCATAGCCCGCTATTTAAA 57.047 33.333 6.48 0.00 37.16 1.52
539 2596 6.952773 AATGTCATAGCCCGCTATTTAAAA 57.047 33.333 6.48 0.00 37.16 1.52
540 2597 5.744666 TGTCATAGCCCGCTATTTAAAAC 57.255 39.130 6.48 2.41 37.16 2.43
541 2598 5.186942 TGTCATAGCCCGCTATTTAAAACA 58.813 37.500 6.48 4.59 37.16 2.83
542 2599 5.825679 TGTCATAGCCCGCTATTTAAAACAT 59.174 36.000 6.48 0.00 37.16 2.71
543 2600 6.320164 TGTCATAGCCCGCTATTTAAAACATT 59.680 34.615 6.48 0.00 37.16 2.71
544 2601 6.636850 GTCATAGCCCGCTATTTAAAACATTG 59.363 38.462 6.48 0.00 37.16 2.82
545 2602 6.320164 TCATAGCCCGCTATTTAAAACATTGT 59.680 34.615 6.48 0.00 37.16 2.71
546 2603 4.743493 AGCCCGCTATTTAAAACATTGTG 58.257 39.130 0.00 0.00 0.00 3.33
547 2604 3.305897 GCCCGCTATTTAAAACATTGTGC 59.694 43.478 0.00 0.00 0.00 4.57
548 2605 3.545873 CCCGCTATTTAAAACATTGTGCG 59.454 43.478 6.84 6.84 40.44 5.34
549 2606 4.162812 CCGCTATTTAAAACATTGTGCGT 58.837 39.130 11.32 0.00 39.35 5.24
550 2607 4.262045 CCGCTATTTAAAACATTGTGCGTC 59.738 41.667 11.32 0.00 39.35 5.19
551 2608 4.848841 CGCTATTTAAAACATTGTGCGTCA 59.151 37.500 5.91 0.00 36.78 4.35
552 2609 5.511377 CGCTATTTAAAACATTGTGCGTCAT 59.489 36.000 5.91 0.00 36.78 3.06
576 2633 7.381766 TGTGTGATTGTTTGATCCTTGATAG 57.618 36.000 0.00 0.00 0.00 2.08
588 2645 2.552743 TCCTTGATAGTCGACTATGCGG 59.447 50.000 36.32 29.51 39.14 5.69
614 2671 6.270064 TCGATTTATTCTCGTTGATGTAGCA 58.730 36.000 0.00 0.00 37.40 3.49
635 2696 4.458989 GCAATTTGATCTGTGGGTAGTTGA 59.541 41.667 0.00 0.00 0.00 3.18
650 2711 5.105752 GGTAGTTGATCTAGTTGAGCACAG 58.894 45.833 0.00 0.00 41.17 3.66
949 3097 5.008712 GCTCAAACCAAGCTACAAGTAAGTT 59.991 40.000 0.00 0.00 36.80 2.66
952 3100 4.017177 ACCAAGCTACAAGTAAGTTCCC 57.983 45.455 0.00 0.00 0.00 3.97
964 3112 8.376803 ACAAGTAAGTTCCCTAGCTATAAGTT 57.623 34.615 0.00 1.87 0.00 2.66
1201 3486 6.810500 AGCACTATATTCTATCTCCCTCCTT 58.189 40.000 0.00 0.00 0.00 3.36
1207 3492 9.540538 CTATATTCTATCTCCCTCCTTTGAGAA 57.459 37.037 0.00 0.00 40.75 2.87
1327 3623 0.106769 TACCCGTCGCCATGTACCTA 60.107 55.000 0.00 0.00 0.00 3.08
1447 3768 1.376649 AGCTCCTGATTCCCTTTGGT 58.623 50.000 0.00 0.00 0.00 3.67
1448 3769 1.005215 AGCTCCTGATTCCCTTTGGTG 59.995 52.381 0.00 0.00 0.00 4.17
1449 3770 1.004745 GCTCCTGATTCCCTTTGGTGA 59.995 52.381 0.00 0.00 0.00 4.02
1450 3771 2.555227 GCTCCTGATTCCCTTTGGTGAA 60.555 50.000 0.00 0.00 0.00 3.18
1451 3772 3.879321 GCTCCTGATTCCCTTTGGTGAAT 60.879 47.826 0.00 0.00 34.02 2.57
1452 3773 3.698040 CTCCTGATTCCCTTTGGTGAATG 59.302 47.826 0.00 0.00 31.56 2.67
1453 3774 2.762327 CCTGATTCCCTTTGGTGAATGG 59.238 50.000 0.00 0.00 31.56 3.16
1755 4122 4.034858 CCTGATCGATCAATTCCACACAAG 59.965 45.833 27.09 11.80 36.18 3.16
1844 7104 7.077050 TCTTTTCATCCATGGGTTGAATTTT 57.923 32.000 23.32 0.00 39.95 1.82
1892 7152 1.469940 CGAGGCACTAGAAACATCGCT 60.470 52.381 0.00 0.00 41.55 4.93
1935 7195 4.829064 TTGACTCGTTCTTGGATTTTGG 57.171 40.909 0.00 0.00 0.00 3.28
1943 7203 4.556233 GTTCTTGGATTTTGGTAACCAGC 58.444 43.478 0.00 0.00 33.81 4.85
1951 7211 4.379339 TTTTGGTAACCAGCTGACAAAC 57.621 40.909 17.39 7.57 33.81 2.93
1957 7217 0.107410 ACCAGCTGACAAACCGAACA 60.107 50.000 17.39 0.00 0.00 3.18
1998 7262 4.338118 TGTTGTCCAAGGATGACAGTTTTC 59.662 41.667 0.00 0.00 43.14 2.29
1999 7263 4.437682 TGTCCAAGGATGACAGTTTTCT 57.562 40.909 0.00 0.00 37.80 2.52
2000 7264 4.792068 TGTCCAAGGATGACAGTTTTCTT 58.208 39.130 0.00 0.00 37.80 2.52
2001 7265 5.200483 TGTCCAAGGATGACAGTTTTCTTT 58.800 37.500 0.00 0.00 37.80 2.52
2042 7306 6.710692 AATTCGTCCAATTCATTTTTCTGC 57.289 33.333 0.00 0.00 27.18 4.26
2046 7310 4.321156 CGTCCAATTCATTTTTCTGCCAGA 60.321 41.667 0.00 0.00 0.00 3.86
2063 7327 2.053627 CAGAATTTGCCGTGCTTGTTC 58.946 47.619 0.00 0.00 0.00 3.18
2079 7392 6.371548 GTGCTTGTTCAATTGGACATACTCTA 59.628 38.462 20.25 3.54 0.00 2.43
2096 7409 4.248859 ACTCTACAAGCATACAACAGCAG 58.751 43.478 0.00 0.00 0.00 4.24
2145 7458 3.759581 ACATCTTTGCAGAGACCAATGT 58.240 40.909 9.45 7.22 30.36 2.71
2146 7459 3.755378 ACATCTTTGCAGAGACCAATGTC 59.245 43.478 9.45 0.00 42.09 3.06
2147 7460 3.490439 TCTTTGCAGAGACCAATGTCA 57.510 42.857 2.15 0.00 44.33 3.58
2148 7461 3.405831 TCTTTGCAGAGACCAATGTCAG 58.594 45.455 2.15 0.00 44.33 3.51
2149 7462 2.936919 TTGCAGAGACCAATGTCAGT 57.063 45.000 0.00 0.00 44.33 3.41
2150 7463 2.174363 TGCAGAGACCAATGTCAGTG 57.826 50.000 0.00 0.00 44.33 3.66
2151 7464 1.693606 TGCAGAGACCAATGTCAGTGA 59.306 47.619 0.89 0.00 44.33 3.41
2161 7474 3.937706 CCAATGTCAGTGAATCAGTCTCC 59.062 47.826 0.89 0.00 0.00 3.71
2185 7498 2.985139 GCTTTTCTTGTTGATCAGCAGC 59.015 45.455 12.26 7.77 32.98 5.25
2186 7499 3.551454 GCTTTTCTTGTTGATCAGCAGCA 60.551 43.478 12.26 0.69 35.81 4.41
2214 7527 6.098266 TCAGCAGTTAGTGTGACCATATACAT 59.902 38.462 0.00 0.00 0.00 2.29
2281 8772 2.501723 TCACCACTAGATCTCTTTGCCC 59.498 50.000 0.00 0.00 0.00 5.36
2285 8776 3.706594 CCACTAGATCTCTTTGCCCTGTA 59.293 47.826 0.00 0.00 0.00 2.74
2434 8954 5.415389 TGAATCAAACCACCAGATGTATGTG 59.585 40.000 0.00 0.00 0.00 3.21
2449 8969 8.366401 CAGATGTATGTGGATCTAGAATTGAGT 58.634 37.037 0.00 0.00 0.00 3.41
2450 8970 8.584157 AGATGTATGTGGATCTAGAATTGAGTC 58.416 37.037 0.00 0.00 0.00 3.36
2461 8981 7.295322 TCTAGAATTGAGTCTGGATATGGTG 57.705 40.000 0.00 0.00 30.87 4.17
2465 8985 6.384015 AGAATTGAGTCTGGATATGGTGTACA 59.616 38.462 0.00 0.00 0.00 2.90
2482 9002 5.302360 GTGTACAATGTTCTTGTCCACCTA 58.698 41.667 0.00 0.00 34.49 3.08
2485 9005 4.899502 ACAATGTTCTTGTCCACCTAGAG 58.100 43.478 0.00 0.00 0.00 2.43
2494 9014 0.178873 TCCACCTAGAGGGCTTTGGT 60.179 55.000 0.00 0.00 40.27 3.67
2495 9015 0.698818 CCACCTAGAGGGCTTTGGTT 59.301 55.000 0.00 0.00 40.27 3.67
2515 9035 6.565036 TGGTTAGGATATCATCTGAGATGGA 58.435 40.000 21.27 10.92 0.00 3.41
2534 9054 2.827921 GGATTGCTTGGATCCAAACACT 59.172 45.455 26.51 22.06 42.17 3.55
2604 9124 2.147958 TGGCTATCGCTTCGTTGTTTT 58.852 42.857 0.00 0.00 36.09 2.43
2617 9137 5.970140 TCGTTGTTTTCGATGTTGAACTA 57.030 34.783 0.00 0.00 32.30 2.24
2618 9138 5.969741 TCGTTGTTTTCGATGTTGAACTAG 58.030 37.500 0.00 0.00 32.30 2.57
2632 9152 5.221722 TGTTGAACTAGAAGTGAATCAGCCT 60.222 40.000 0.00 0.00 0.00 4.58
2710 9230 3.138304 CAGGGATTGAAGTCACGAAACA 58.862 45.455 0.00 0.00 0.00 2.83
2711 9231 3.753272 CAGGGATTGAAGTCACGAAACAT 59.247 43.478 0.00 0.00 0.00 2.71
2714 9235 4.378459 GGGATTGAAGTCACGAAACATCAC 60.378 45.833 0.00 0.00 0.00 3.06
2736 9257 1.070758 GAGTGAGCCTTCCAACACTGA 59.929 52.381 0.00 0.00 42.45 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.495572 GGTTTCTAGGGTCATAGATATCAAAAG 57.504 37.037 5.32 0.00 31.96 2.27
43 44 0.878523 TTGTTGTCAAGAGCGTCCCG 60.879 55.000 0.00 0.00 0.00 5.14
60 61 9.850628 TTTTCAATCAGAATATCTCTTGCTTTG 57.149 29.630 0.00 0.00 35.83 2.77
129 130 6.435428 AGCGTACGAAAAATGTCTTTCAATT 58.565 32.000 21.65 0.00 35.43 2.32
130 131 5.997385 AGCGTACGAAAAATGTCTTTCAAT 58.003 33.333 21.65 0.00 35.43 2.57
134 135 6.535274 AGTAAGCGTACGAAAAATGTCTTT 57.465 33.333 21.65 0.00 35.20 2.52
173 2226 2.859165 TCATGAGAAACGGCTCCTTT 57.141 45.000 0.00 0.00 33.95 3.11
274 2328 8.408601 GTCATAAATAACAAGGTCATGCTTCAT 58.591 33.333 0.00 0.00 0.00 2.57
280 2334 7.864108 TCAGGTCATAAATAACAAGGTCATG 57.136 36.000 0.00 0.00 0.00 3.07
386 2443 1.746615 CAGTGGCGACATTGGAGGG 60.747 63.158 5.73 0.00 43.73 4.30
459 2516 0.538118 AACGGGGCTATAGCGACAAA 59.462 50.000 18.30 0.00 43.26 2.83
464 2521 2.205307 GCTATAACGGGGCTATAGCG 57.795 55.000 18.30 7.55 42.47 4.26
466 2523 2.431057 CTGGGCTATAACGGGGCTATAG 59.569 54.545 0.00 0.00 33.99 1.31
467 2524 2.463752 CTGGGCTATAACGGGGCTATA 58.536 52.381 0.00 0.00 0.00 1.31
468 2525 1.276622 CTGGGCTATAACGGGGCTAT 58.723 55.000 0.00 0.00 0.00 2.97
469 2526 1.477685 GCTGGGCTATAACGGGGCTA 61.478 60.000 0.00 0.00 0.00 3.93
470 2527 2.819284 GCTGGGCTATAACGGGGCT 61.819 63.158 0.00 0.00 0.00 5.19
471 2528 1.477685 TAGCTGGGCTATAACGGGGC 61.478 60.000 0.00 0.00 40.44 5.80
472 2529 2.754648 TAGCTGGGCTATAACGGGG 58.245 57.895 0.00 0.00 40.44 5.73
487 2544 6.209361 GGCAATCCTTAAAAACAGCTATAGC 58.791 40.000 17.33 17.33 42.49 2.97
488 2545 6.430451 CGGCAATCCTTAAAAACAGCTATAG 58.570 40.000 0.00 0.00 0.00 1.31
489 2546 5.220970 GCGGCAATCCTTAAAAACAGCTATA 60.221 40.000 0.00 0.00 0.00 1.31
490 2547 4.440112 GCGGCAATCCTTAAAAACAGCTAT 60.440 41.667 0.00 0.00 0.00 2.97
491 2548 3.119637 GCGGCAATCCTTAAAAACAGCTA 60.120 43.478 0.00 0.00 0.00 3.32
492 2549 2.352715 GCGGCAATCCTTAAAAACAGCT 60.353 45.455 0.00 0.00 0.00 4.24
493 2550 1.992667 GCGGCAATCCTTAAAAACAGC 59.007 47.619 0.00 0.00 0.00 4.40
494 2551 3.575965 AGCGGCAATCCTTAAAAACAG 57.424 42.857 1.45 0.00 0.00 3.16
495 2552 5.455056 TTTAGCGGCAATCCTTAAAAACA 57.545 34.783 1.45 0.00 0.00 2.83
496 2553 5.867174 ACATTTAGCGGCAATCCTTAAAAAC 59.133 36.000 1.45 0.00 0.00 2.43
497 2554 6.031751 ACATTTAGCGGCAATCCTTAAAAA 57.968 33.333 1.45 0.00 0.00 1.94
498 2555 5.184096 TGACATTTAGCGGCAATCCTTAAAA 59.816 36.000 1.45 0.00 0.00 1.52
499 2556 4.702612 TGACATTTAGCGGCAATCCTTAAA 59.297 37.500 1.45 0.00 0.00 1.52
500 2557 4.265893 TGACATTTAGCGGCAATCCTTAA 58.734 39.130 1.45 0.00 0.00 1.85
501 2558 3.879998 TGACATTTAGCGGCAATCCTTA 58.120 40.909 1.45 0.00 0.00 2.69
502 2559 2.722094 TGACATTTAGCGGCAATCCTT 58.278 42.857 1.45 0.00 0.00 3.36
503 2560 2.418368 TGACATTTAGCGGCAATCCT 57.582 45.000 1.45 0.00 0.00 3.24
504 2561 3.365364 GCTATGACATTTAGCGGCAATCC 60.365 47.826 1.45 0.00 33.37 3.01
505 2562 3.365364 GGCTATGACATTTAGCGGCAATC 60.365 47.826 1.45 0.00 42.41 2.67
506 2563 2.554032 GGCTATGACATTTAGCGGCAAT 59.446 45.455 1.45 0.00 42.41 3.56
507 2564 1.946768 GGCTATGACATTTAGCGGCAA 59.053 47.619 1.45 0.00 42.41 4.52
508 2565 1.593196 GGCTATGACATTTAGCGGCA 58.407 50.000 1.45 0.00 42.41 5.69
509 2566 0.875059 GGGCTATGACATTTAGCGGC 59.125 55.000 4.50 0.00 42.41 6.53
510 2567 1.148310 CGGGCTATGACATTTAGCGG 58.852 55.000 4.50 0.00 42.41 5.52
511 2568 0.512952 GCGGGCTATGACATTTAGCG 59.487 55.000 4.50 0.00 42.41 4.26
512 2569 1.884235 AGCGGGCTATGACATTTAGC 58.116 50.000 2.09 2.09 41.08 3.09
513 2570 7.667043 TTAAATAGCGGGCTATGACATTTAG 57.333 36.000 13.53 0.00 39.03 1.85
514 2571 8.347035 GTTTTAAATAGCGGGCTATGACATTTA 58.653 33.333 13.53 7.51 39.03 1.40
515 2572 6.952773 TTTAAATAGCGGGCTATGACATTT 57.047 33.333 13.53 8.39 39.03 2.32
516 2573 6.320164 TGTTTTAAATAGCGGGCTATGACATT 59.680 34.615 13.53 7.15 39.03 2.71
517 2574 5.825679 TGTTTTAAATAGCGGGCTATGACAT 59.174 36.000 13.53 0.00 39.03 3.06
518 2575 5.186942 TGTTTTAAATAGCGGGCTATGACA 58.813 37.500 13.53 10.50 39.03 3.58
519 2576 5.744666 TGTTTTAAATAGCGGGCTATGAC 57.255 39.130 13.53 8.51 39.03 3.06
520 2577 6.320164 ACAATGTTTTAAATAGCGGGCTATGA 59.680 34.615 13.53 3.16 39.03 2.15
521 2578 6.417635 CACAATGTTTTAAATAGCGGGCTATG 59.582 38.462 13.53 2.18 39.03 2.23
522 2579 6.503524 CACAATGTTTTAAATAGCGGGCTAT 58.496 36.000 7.36 7.36 40.63 2.97
523 2580 5.677598 GCACAATGTTTTAAATAGCGGGCTA 60.678 40.000 2.42 2.42 0.00 3.93
524 2581 4.743493 CACAATGTTTTAAATAGCGGGCT 58.257 39.130 0.00 0.00 0.00 5.19
525 2582 3.305897 GCACAATGTTTTAAATAGCGGGC 59.694 43.478 0.00 0.00 0.00 6.13
526 2583 3.545873 CGCACAATGTTTTAAATAGCGGG 59.454 43.478 3.12 0.00 39.07 6.13
527 2584 4.162812 ACGCACAATGTTTTAAATAGCGG 58.837 39.130 13.38 0.00 46.02 5.52
528 2585 4.848841 TGACGCACAATGTTTTAAATAGCG 59.151 37.500 8.53 8.53 46.98 4.26
529 2586 6.307800 ACATGACGCACAATGTTTTAAATAGC 59.692 34.615 0.00 0.00 0.00 2.97
530 2587 7.325821 ACACATGACGCACAATGTTTTAAATAG 59.674 33.333 0.00 0.00 30.94 1.73
531 2588 7.114106 CACACATGACGCACAATGTTTTAAATA 59.886 33.333 0.00 0.00 32.15 1.40
532 2589 5.982516 ACACATGACGCACAATGTTTTAAAT 59.017 32.000 0.00 0.00 30.94 1.40
533 2590 5.230936 CACACATGACGCACAATGTTTTAAA 59.769 36.000 0.00 0.00 32.15 1.52
534 2591 4.737279 CACACATGACGCACAATGTTTTAA 59.263 37.500 0.00 0.00 32.15 1.52
535 2592 4.035675 TCACACATGACGCACAATGTTTTA 59.964 37.500 0.00 0.00 32.15 1.52
536 2593 3.114809 CACACATGACGCACAATGTTTT 58.885 40.909 0.00 0.00 32.15 2.43
537 2594 2.357323 TCACACATGACGCACAATGTTT 59.643 40.909 0.00 0.00 32.15 2.83
538 2595 1.946081 TCACACATGACGCACAATGTT 59.054 42.857 0.00 0.00 32.15 2.71
539 2596 1.592064 TCACACATGACGCACAATGT 58.408 45.000 0.00 0.00 33.91 2.71
540 2597 2.905959 ATCACACATGACGCACAATG 57.094 45.000 0.00 0.00 37.79 2.82
541 2598 2.553602 ACAATCACACATGACGCACAAT 59.446 40.909 0.00 0.00 37.79 2.71
542 2599 1.946081 ACAATCACACATGACGCACAA 59.054 42.857 0.00 0.00 37.79 3.33
543 2600 1.592064 ACAATCACACATGACGCACA 58.408 45.000 0.00 0.00 37.79 4.57
544 2601 2.686558 AACAATCACACATGACGCAC 57.313 45.000 0.00 0.00 37.79 5.34
545 2602 2.615912 TCAAACAATCACACATGACGCA 59.384 40.909 0.00 0.00 37.79 5.24
546 2603 3.266541 TCAAACAATCACACATGACGC 57.733 42.857 0.00 0.00 37.79 5.19
547 2604 4.154737 AGGATCAAACAATCACACATGACG 59.845 41.667 0.00 0.00 37.79 4.35
548 2605 5.633830 AGGATCAAACAATCACACATGAC 57.366 39.130 0.00 0.00 37.79 3.06
549 2606 5.769162 TCAAGGATCAAACAATCACACATGA 59.231 36.000 0.00 0.00 39.83 3.07
550 2607 6.016213 TCAAGGATCAAACAATCACACATG 57.984 37.500 0.00 0.00 0.00 3.21
551 2608 6.845758 ATCAAGGATCAAACAATCACACAT 57.154 33.333 0.00 0.00 0.00 3.21
552 2609 6.942005 ACTATCAAGGATCAAACAATCACACA 59.058 34.615 0.00 0.00 0.00 3.72
576 2633 0.317938 AATCGAGCCGCATAGTCGAC 60.318 55.000 7.70 7.70 44.89 4.20
588 2645 5.643339 ACATCAACGAGAATAAATCGAGC 57.357 39.130 1.94 0.00 42.76 5.03
614 2671 6.725364 AGATCAACTACCCACAGATCAAATT 58.275 36.000 0.00 0.00 38.00 1.82
635 2696 1.273606 ACGTGCTGTGCTCAACTAGAT 59.726 47.619 0.00 0.00 0.00 1.98
809 2907 1.669760 GTCACCGAAATGTCCGCCA 60.670 57.895 0.00 0.00 0.00 5.69
949 3097 1.884579 CGGCGAACTTATAGCTAGGGA 59.115 52.381 0.00 0.00 0.00 4.20
952 3100 3.418094 CGATCGGCGAACTTATAGCTAG 58.582 50.000 15.93 0.00 44.57 3.42
1201 3486 8.627403 AGAAATCGTTCCGTATATACTTCTCAA 58.373 33.333 11.05 0.00 33.92 3.02
1207 3492 7.808381 CACATCAGAAATCGTTCCGTATATACT 59.192 37.037 11.05 0.00 33.92 2.12
1447 3768 7.264221 GCAATTGTCATAACCATAACCATTCA 58.736 34.615 7.40 0.00 0.00 2.57
1448 3769 6.701400 GGCAATTGTCATAACCATAACCATTC 59.299 38.462 4.85 0.00 0.00 2.67
1449 3770 6.581712 GGCAATTGTCATAACCATAACCATT 58.418 36.000 4.85 0.00 0.00 3.16
1450 3771 5.221224 CGGCAATTGTCATAACCATAACCAT 60.221 40.000 11.22 0.00 0.00 3.55
1451 3772 4.097135 CGGCAATTGTCATAACCATAACCA 59.903 41.667 11.22 0.00 0.00 3.67
1452 3773 4.606961 CGGCAATTGTCATAACCATAACC 58.393 43.478 11.22 0.00 0.00 2.85
1453 3774 4.041723 GCGGCAATTGTCATAACCATAAC 58.958 43.478 11.22 0.00 0.00 1.89
1755 4122 3.685139 TGAACTGAGGTCATCTTGGTC 57.315 47.619 0.00 0.00 0.00 4.02
1827 7087 6.377245 AATGTGAAAATTCAACCCATGGAT 57.623 33.333 15.22 0.00 39.21 3.41
1844 7104 9.389755 TCTTAATTCATGTTCCGATTAATGTGA 57.610 29.630 0.00 0.00 0.00 3.58
1868 7128 1.257743 TGTTTCTAGTGCCTCGCTCT 58.742 50.000 0.00 0.00 36.36 4.09
1892 7152 9.651913 GTCAATAAATAAAAAGGCAGGAATCAA 57.348 29.630 0.00 0.00 0.00 2.57
1935 7195 1.873698 TCGGTTTGTCAGCTGGTTAC 58.126 50.000 15.13 5.40 0.00 2.50
1943 7203 2.680841 TGGAAAGTGTTCGGTTTGTCAG 59.319 45.455 0.00 0.00 34.28 3.51
1951 7211 1.440938 TTGCCGTGGAAAGTGTTCGG 61.441 55.000 0.00 0.00 43.37 4.30
1957 7217 4.038642 ACAACATAAATTGCCGTGGAAAGT 59.961 37.500 0.00 0.00 32.47 2.66
1998 7262 8.589629 CGAATTTTCCATGATTGCTAAAGAAAG 58.410 33.333 0.00 0.00 0.00 2.62
1999 7263 8.087750 ACGAATTTTCCATGATTGCTAAAGAAA 58.912 29.630 0.00 0.00 0.00 2.52
2000 7264 7.601856 ACGAATTTTCCATGATTGCTAAAGAA 58.398 30.769 0.00 0.00 0.00 2.52
2001 7265 7.156876 ACGAATTTTCCATGATTGCTAAAGA 57.843 32.000 0.00 0.00 0.00 2.52
2042 7306 0.314935 ACAAGCACGGCAAATTCTGG 59.685 50.000 0.00 0.00 0.00 3.86
2046 7310 2.593346 TTGAACAAGCACGGCAAATT 57.407 40.000 0.00 0.00 0.00 1.82
2063 7327 6.932356 ATGCTTGTAGAGTATGTCCAATTG 57.068 37.500 0.00 0.00 28.71 2.32
2079 7392 4.095483 GCTATTCTGCTGTTGTATGCTTGT 59.905 41.667 0.00 0.00 0.00 3.16
2096 7409 9.937175 AGCTAATAAAGAACGAAAATGCTATTC 57.063 29.630 0.00 0.00 0.00 1.75
2145 7458 2.824687 AGCAGGGAGACTGATTCACTGA 60.825 50.000 15.85 0.00 45.07 3.41
2146 7459 1.554160 AGCAGGGAGACTGATTCACTG 59.446 52.381 9.85 9.85 45.07 3.66
2147 7460 1.949799 AGCAGGGAGACTGATTCACT 58.050 50.000 0.00 0.00 45.07 3.41
2161 7474 3.005050 TGCTGATCAACAAGAAAAGCAGG 59.995 43.478 0.00 0.00 41.25 4.85
2185 7498 2.802816 GGTCACACTAACTGCTGAAGTG 59.197 50.000 20.58 20.58 44.89 3.16
2186 7499 2.434336 TGGTCACACTAACTGCTGAAGT 59.566 45.455 0.00 0.00 42.60 3.01
2214 7527 5.127194 ACGGACAATTCAGCTCTCAAGTATA 59.873 40.000 0.00 0.00 0.00 1.47
2285 8776 2.669434 GTGGATTATGTACAACGTGCGT 59.331 45.455 0.00 0.00 0.00 5.24
2396 8916 7.708752 GTGGTTTGATTCATTTGTTCCTTAACA 59.291 33.333 0.00 0.00 43.85 2.41
2434 8954 7.180051 ACCATATCCAGACTCAATTCTAGATCC 59.820 40.741 0.00 0.00 28.44 3.36
2449 8969 6.560003 AGAACATTGTACACCATATCCAGA 57.440 37.500 0.00 0.00 0.00 3.86
2450 8970 6.599244 ACAAGAACATTGTACACCATATCCAG 59.401 38.462 0.00 0.00 0.00 3.86
2461 8981 5.790593 TCTAGGTGGACAAGAACATTGTAC 58.209 41.667 0.00 0.00 33.91 2.90
2465 8985 3.264450 CCCTCTAGGTGGACAAGAACATT 59.736 47.826 4.57 0.00 0.00 2.71
2482 9002 4.307259 TGATATCCTAACCAAAGCCCTCT 58.693 43.478 0.00 0.00 0.00 3.69
2485 9005 5.006386 CAGATGATATCCTAACCAAAGCCC 58.994 45.833 0.00 0.00 0.00 5.19
2494 9014 7.402361 AGCAATCCATCTCAGATGATATCCTAA 59.598 37.037 16.90 0.00 0.00 2.69
2495 9015 6.901857 AGCAATCCATCTCAGATGATATCCTA 59.098 38.462 16.90 0.00 0.00 2.94
2515 9035 2.028748 GCAGTGTTTGGATCCAAGCAAT 60.029 45.455 36.47 33.66 45.78 3.56
2531 9051 1.753930 TCACCATAGCCAATGCAGTG 58.246 50.000 7.29 7.29 41.13 3.66
2534 9054 2.092267 AGTGATCACCATAGCCAATGCA 60.092 45.455 22.21 0.00 41.13 3.96
2604 9124 6.687604 TGATTCACTTCTAGTTCAACATCGA 58.312 36.000 0.00 0.00 0.00 3.59
2617 9137 1.808945 CGCAAAGGCTGATTCACTTCT 59.191 47.619 0.00 0.00 38.10 2.85
2618 9138 1.135575 CCGCAAAGGCTGATTCACTTC 60.136 52.381 0.00 0.00 38.10 3.01
2643 9163 2.102252 TGAACAAAGGGGATGTGTTTGC 59.898 45.455 0.00 0.00 35.67 3.68
2694 9214 5.056480 TCTGTGATGTTTCGTGACTTCAAT 58.944 37.500 9.67 0.00 36.05 2.57
2696 9216 4.051237 CTCTGTGATGTTTCGTGACTTCA 58.949 43.478 5.77 5.77 33.06 3.02
2710 9230 1.649321 TGGAAGGCTCACTCTGTGAT 58.351 50.000 0.65 0.00 41.94 3.06
2711 9231 1.070758 GTTGGAAGGCTCACTCTGTGA 59.929 52.381 0.37 0.37 40.50 3.58
2714 9235 1.071385 AGTGTTGGAAGGCTCACTCTG 59.929 52.381 0.31 0.00 36.59 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.