Multiple sequence alignment - TraesCS1A01G052400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G052400 chr1A 100.000 3619 0 0 1 3619 34424461 34428079 0.000000e+00 6684.0
1 TraesCS1A01G052400 chr1A 89.737 380 36 3 2522 2899 34919113 34919491 1.950000e-132 483.0
2 TraesCS1A01G052400 chr1A 89.737 380 35 4 2522 2899 529435262 529435639 1.950000e-132 483.0
3 TraesCS1A01G052400 chr1A 97.842 278 6 0 1 278 562436755 562436478 7.030000e-132 481.0
4 TraesCS1A01G052400 chr1A 97.491 279 5 2 1 278 55419393 55419116 3.270000e-130 475.0
5 TraesCS1A01G052400 chr1A 97.826 276 5 1 1 275 496553420 496553695 3.270000e-130 475.0
6 TraesCS1A01G052400 chr1A 93.355 301 17 1 995 1295 529434963 529435260 3.320000e-120 442.0
7 TraesCS1A01G052400 chr1A 91.475 305 17 3 995 1299 34918820 34919115 9.350000e-111 411.0
8 TraesCS1A01G052400 chr1A 93.913 115 7 0 3505 3619 33191893 33191779 1.340000e-39 174.0
9 TraesCS1A01G052400 chr1A 88.889 108 10 1 1038 1145 469237875 469237770 8.150000e-27 132.0
10 TraesCS1A01G052400 chr1A 87.156 109 12 1 1038 1146 98946739 98946633 4.910000e-24 122.0
11 TraesCS1A01G052400 chr1A 100.000 35 0 0 274 308 260996345 260996311 8.390000e-07 65.8
12 TraesCS1A01G052400 chr1A 100.000 35 0 0 274 308 261005494 261005460 8.390000e-07 65.8
13 TraesCS1A01G052400 chr1A 100.000 35 0 0 274 308 300717919 300717885 8.390000e-07 65.8
14 TraesCS1A01G052400 chr1A 100.000 35 0 0 274 308 430103725 430103691 8.390000e-07 65.8
15 TraesCS1A01G052400 chr2B 93.758 3316 164 13 308 3619 434228320 434231596 0.000000e+00 4937.0
16 TraesCS1A01G052400 chr2B 93.026 932 60 4 304 1235 72801029 72800103 0.000000e+00 1356.0
17 TraesCS1A01G052400 chr2B 87.978 732 74 3 308 1027 49262986 49263715 0.000000e+00 852.0
18 TraesCS1A01G052400 chr2B 93.668 379 22 2 2521 2899 72770535 72770159 1.890000e-157 566.0
19 TraesCS1A01G052400 chr2A 98.295 2405 28 6 1217 3619 750038226 750035833 0.000000e+00 4202.0
20 TraesCS1A01G052400 chr2A 96.927 846 25 1 308 1153 750039090 750038246 0.000000e+00 1417.0
21 TraesCS1A01G052400 chr2A 87.669 738 74 3 308 1030 68477530 68476795 0.000000e+00 843.0
22 TraesCS1A01G052400 chr2A 97.849 279 5 1 1 278 327984041 327983763 7.030000e-132 481.0
23 TraesCS1A01G052400 chr2A 97.849 279 5 1 1 278 681048553 681048275 7.030000e-132 481.0
24 TraesCS1A01G052400 chr6B 94.218 2352 113 5 308 2658 56577390 56575061 0.000000e+00 3568.0
25 TraesCS1A01G052400 chr6B 92.079 404 32 0 3216 3619 56575067 56574664 1.460000e-158 569.0
26 TraesCS1A01G052400 chr6B 93.770 305 16 3 995 1299 720148515 720148816 4.260000e-124 455.0
27 TraesCS1A01G052400 chr6B 91.586 309 22 2 995 1302 345807240 345806935 1.200000e-114 424.0
28 TraesCS1A01G052400 chr6B 91.416 233 16 3 2667 2899 345806704 345806476 2.100000e-82 316.0
29 TraesCS1A01G052400 chr6B 89.540 239 22 3 2522 2758 720148814 720149051 2.110000e-77 300.0
30 TraesCS1A01G052400 chr5B 96.166 1226 43 4 1299 2523 98840808 98842030 0.000000e+00 2001.0
31 TraesCS1A01G052400 chr5B 92.511 227 9 2 2901 3127 636914490 636914708 5.830000e-83 318.0
32 TraesCS1A01G052400 chr5B 91.266 229 12 2 2902 3130 234046161 234045941 4.540000e-79 305.0
33 TraesCS1A01G052400 chr5D 95.735 633 25 1 1893 2523 93804285 93804917 0.000000e+00 1018.0
34 TraesCS1A01G052400 chr5D 95.010 501 23 1 1299 1799 93803585 93804083 0.000000e+00 785.0
35 TraesCS1A01G052400 chr5D 92.857 280 12 2 2901 3180 24440915 24441186 2.020000e-107 399.0
36 TraesCS1A01G052400 chr5D 94.898 98 5 0 1798 1895 93804279 93804182 1.740000e-33 154.0
37 TraesCS1A01G052400 chr5D 95.312 64 3 0 3222 3285 24441179 24441242 6.390000e-18 102.0
38 TraesCS1A01G052400 chr5D 100.000 35 0 0 274 308 466700000 466699966 8.390000e-07 65.8
39 TraesCS1A01G052400 chr5D 100.000 35 0 0 274 308 487424021 487423987 8.390000e-07 65.8
40 TraesCS1A01G052400 chr5A 93.038 632 21 7 1893 2523 87407379 87407988 0.000000e+00 902.0
41 TraesCS1A01G052400 chr5A 94.422 502 26 2 1299 1799 87406677 87407177 0.000000e+00 771.0
42 TraesCS1A01G052400 chr5A 90.789 380 32 3 2522 2899 599248072 599247694 4.170000e-139 505.0
43 TraesCS1A01G052400 chr5A 92.949 312 17 3 995 1304 599248371 599248063 1.980000e-122 449.0
44 TraesCS1A01G052400 chr5A 94.898 98 5 0 1798 1895 87407373 87407276 1.740000e-33 154.0
45 TraesCS1A01G052400 chr3B 88.615 729 69 2 307 1022 47165103 47165830 0.000000e+00 874.0
46 TraesCS1A01G052400 chr3B 86.395 735 81 5 308 1027 704096357 704097087 0.000000e+00 785.0
47 TraesCS1A01G052400 chr6A 87.995 733 74 2 308 1027 617382842 617383573 0.000000e+00 854.0
48 TraesCS1A01G052400 chr6A 87.398 738 75 4 308 1030 561950885 561950151 0.000000e+00 832.0
49 TraesCS1A01G052400 chr6A 97.826 276 5 1 1 275 356998841 356999116 3.270000e-130 475.0
50 TraesCS1A01G052400 chr6A 97.818 275 6 0 1 275 398819721 398819995 3.270000e-130 475.0
51 TraesCS1A01G052400 chr6A 91.362 301 20 3 995 1294 462917633 462917338 1.210000e-109 407.0
52 TraesCS1A01G052400 chr6A 90.698 301 21 4 995 1294 561950106 561949812 9.420000e-106 394.0
53 TraesCS1A01G052400 chr6A 90.033 301 24 3 995 1294 617383621 617383916 5.670000e-103 385.0
54 TraesCS1A01G052400 chr6A 85.882 170 18 4 2731 2899 561949632 561949468 3.710000e-40 176.0
55 TraesCS1A01G052400 chr6A 85.294 170 19 4 2731 2899 617384096 617384260 1.730000e-38 171.0
56 TraesCS1A01G052400 chr6A 88.652 141 12 3 1038 1177 394643633 394643496 6.210000e-38 169.0
57 TraesCS1A01G052400 chr6A 84.706 170 20 4 2731 2899 462917158 462916994 8.040000e-37 165.0
58 TraesCS1A01G052400 chr6A 100.000 35 0 0 274 308 383550101 383550135 8.390000e-07 65.8
59 TraesCS1A01G052400 chr7B 84.853 746 79 7 309 1029 116074028 116073292 0.000000e+00 721.0
60 TraesCS1A01G052400 chr7B 92.628 312 18 5 995 1304 116073224 116072916 9.220000e-121 444.0
61 TraesCS1A01G052400 chr7B 91.304 230 12 2 2901 3130 668435935 668435714 1.260000e-79 307.0
62 TraesCS1A01G052400 chr7B 89.121 239 24 2 2522 2758 116072925 116072687 2.730000e-76 296.0
63 TraesCS1A01G052400 chr7D 92.105 380 27 3 2522 2899 63303786 63304164 1.910000e-147 532.0
64 TraesCS1A01G052400 chr7D 93.443 305 17 1 995 1299 63303487 63303788 1.980000e-122 449.0
65 TraesCS1A01G052400 chr7D 92.500 280 13 2 2901 3180 276087623 276087894 9.420000e-106 394.0
66 TraesCS1A01G052400 chr7D 92.350 183 14 0 3437 3619 276088795 276088977 9.970000e-66 261.0
67 TraesCS1A01G052400 chr7D 88.623 167 7 3 2901 3063 597627260 597627418 3.690000e-45 193.0
68 TraesCS1A01G052400 chr3A 91.053 380 31 3 2522 2899 632898551 632898929 8.960000e-141 510.0
69 TraesCS1A01G052400 chr3A 97.163 282 7 1 1 282 127640014 127640294 3.270000e-130 475.0
70 TraesCS1A01G052400 chr4A 90.981 377 31 3 2525 2899 411876619 411876244 4.170000e-139 505.0
71 TraesCS1A01G052400 chr4A 90.026 381 34 4 2522 2899 23269318 23268939 1.170000e-134 490.0
72 TraesCS1A01G052400 chr4A 92.434 304 20 1 995 1298 411876921 411876621 7.180000e-117 431.0
73 TraesCS1A01G052400 chr4A 91.257 183 16 0 3437 3619 687008432 687008250 2.160000e-62 250.0
74 TraesCS1A01G052400 chr4A 94.737 114 6 0 3506 3619 627931362 627931475 1.030000e-40 178.0
75 TraesCS1A01G052400 chr7A 90.263 380 33 4 2522 2899 66347685 66347308 9.030000e-136 494.0
76 TraesCS1A01G052400 chr7A 90.000 380 34 4 2522 2899 646503122 646502745 4.200000e-134 488.0
77 TraesCS1A01G052400 chr7A 98.188 276 4 1 1 275 581860408 581860683 7.030000e-132 481.0
78 TraesCS1A01G052400 chr7A 94.783 115 6 0 3505 3619 118775877 118775763 2.870000e-41 180.0
79 TraesCS1A01G052400 chr1B 90.909 374 22 6 2901 3270 102155370 102155005 3.250000e-135 492.0
80 TraesCS1A01G052400 chr1B 84.242 165 17 4 2731 2894 96195858 96195702 6.260000e-33 152.0
81 TraesCS1A01G052400 chr2D 93.238 281 10 3 2901 3180 472762284 472762556 4.350000e-109 405.0
82 TraesCS1A01G052400 chr2D 92.896 183 13 0 3437 3619 472763456 472763638 2.140000e-67 267.0
83 TraesCS1A01G052400 chr2D 93.913 115 7 0 3505 3619 491088950 491089064 1.340000e-39 174.0
84 TraesCS1A01G052400 chr1D 93.214 280 11 1 2901 3180 66930696 66930425 4.350000e-109 405.0
85 TraesCS1A01G052400 chr1D 93.238 281 10 3 2901 3180 424019749 424020021 4.350000e-109 405.0
86 TraesCS1A01G052400 chr1D 90.710 183 16 1 3437 3619 424031540 424031721 3.610000e-60 243.0
87 TraesCS1A01G052400 chr1D 90.164 183 18 0 3437 3619 66929527 66929345 4.670000e-59 239.0
88 TraesCS1A01G052400 chr4D 83.880 366 32 15 3139 3482 7216627 7216987 1.250000e-84 324.0
89 TraesCS1A01G052400 chr4B 90.749 227 12 3 2901 3127 355186214 355186431 9.830000e-76 294.0
90 TraesCS1A01G052400 chr4B 89.437 142 11 3 1035 1175 11347570 11347708 3.710000e-40 176.0
91 TraesCS1A01G052400 chr4B 78.008 241 24 18 3173 3401 13126496 13126719 1.360000e-24 124.0
92 TraesCS1A01G052400 chr4B 94.444 36 2 0 3508 3543 574871642 574871607 5.050000e-04 56.5
93 TraesCS1A01G052400 chr6D 94.783 115 6 0 3505 3619 282327577 282327463 2.870000e-41 180.0
94 TraesCS1A01G052400 chr3D 100.000 35 0 0 274 308 524700989 524701023 8.390000e-07 65.8
95 TraesCS1A01G052400 chr3D 100.000 35 0 0 274 308 561869092 561869126 8.390000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G052400 chr1A 34424461 34428079 3618 False 6684.000000 6684 100.000000 1 3619 1 chr1A.!!$F1 3618
1 TraesCS1A01G052400 chr1A 529434963 529435639 676 False 462.500000 483 91.546000 995 2899 2 chr1A.!!$F4 1904
2 TraesCS1A01G052400 chr1A 34918820 34919491 671 False 447.000000 483 90.606000 995 2899 2 chr1A.!!$F3 1904
3 TraesCS1A01G052400 chr2B 434228320 434231596 3276 False 4937.000000 4937 93.758000 308 3619 1 chr2B.!!$F2 3311
4 TraesCS1A01G052400 chr2B 72800103 72801029 926 True 1356.000000 1356 93.026000 304 1235 1 chr2B.!!$R2 931
5 TraesCS1A01G052400 chr2B 49262986 49263715 729 False 852.000000 852 87.978000 308 1027 1 chr2B.!!$F1 719
6 TraesCS1A01G052400 chr2A 750035833 750039090 3257 True 2809.500000 4202 97.611000 308 3619 2 chr2A.!!$R4 3311
7 TraesCS1A01G052400 chr2A 68476795 68477530 735 True 843.000000 843 87.669000 308 1030 1 chr2A.!!$R1 722
8 TraesCS1A01G052400 chr6B 56574664 56577390 2726 True 2068.500000 3568 93.148500 308 3619 2 chr6B.!!$R1 3311
9 TraesCS1A01G052400 chr6B 720148515 720149051 536 False 377.500000 455 91.655000 995 2758 2 chr6B.!!$F1 1763
10 TraesCS1A01G052400 chr6B 345806476 345807240 764 True 370.000000 424 91.501000 995 2899 2 chr6B.!!$R2 1904
11 TraesCS1A01G052400 chr5B 98840808 98842030 1222 False 2001.000000 2001 96.166000 1299 2523 1 chr5B.!!$F1 1224
12 TraesCS1A01G052400 chr5D 93803585 93804917 1332 False 901.500000 1018 95.372500 1299 2523 2 chr5D.!!$F2 1224
13 TraesCS1A01G052400 chr5A 87406677 87407988 1311 False 836.500000 902 93.730000 1299 2523 2 chr5A.!!$F1 1224
14 TraesCS1A01G052400 chr5A 599247694 599248371 677 True 477.000000 505 91.869000 995 2899 2 chr5A.!!$R2 1904
15 TraesCS1A01G052400 chr3B 47165103 47165830 727 False 874.000000 874 88.615000 307 1022 1 chr3B.!!$F1 715
16 TraesCS1A01G052400 chr3B 704096357 704097087 730 False 785.000000 785 86.395000 308 1027 1 chr3B.!!$F2 719
17 TraesCS1A01G052400 chr6A 617382842 617384260 1418 False 470.000000 854 87.774000 308 2899 3 chr6A.!!$F4 2591
18 TraesCS1A01G052400 chr6A 561949468 561950885 1417 True 467.333333 832 87.992667 308 2899 3 chr6A.!!$R3 2591
19 TraesCS1A01G052400 chr6A 462916994 462917633 639 True 286.000000 407 88.034000 995 2899 2 chr6A.!!$R2 1904
20 TraesCS1A01G052400 chr7B 116072687 116074028 1341 True 487.000000 721 88.867333 309 2758 3 chr7B.!!$R2 2449
21 TraesCS1A01G052400 chr7D 63303487 63304164 677 False 490.500000 532 92.774000 995 2899 2 chr7D.!!$F2 1904
22 TraesCS1A01G052400 chr7D 276087623 276088977 1354 False 327.500000 394 92.425000 2901 3619 2 chr7D.!!$F3 718
23 TraesCS1A01G052400 chr4A 411876244 411876921 677 True 468.000000 505 91.707500 995 2899 2 chr4A.!!$R3 1904
24 TraesCS1A01G052400 chr2D 472762284 472763638 1354 False 336.000000 405 93.067000 2901 3619 2 chr2D.!!$F2 718
25 TraesCS1A01G052400 chr1D 66929345 66930696 1351 True 322.000000 405 91.689000 2901 3619 2 chr1D.!!$R1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.030773 TATGTCCATGACTCGCGCTC 59.969 55.0 5.56 0.00 33.15 5.03 F
267 268 0.030773 GTCCATGACTCGCGCTCATA 59.969 55.0 15.97 2.86 0.00 2.15 F
268 269 0.961753 TCCATGACTCGCGCTCATAT 59.038 50.0 15.97 0.00 0.00 1.78 F
1760 1910 0.438830 GCTCTAACAACTCAACGCCG 59.561 55.0 0.00 0.00 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1078 1223 3.360249 AAAGAGTGATGTTGCTGTTGC 57.640 42.857 0.0 0.0 40.20 4.17 R
1585 1735 4.100189 AGCAGCGTTCATCCTTTACTCTAT 59.900 41.667 0.0 0.0 0.00 1.98 R
1995 2256 8.450964 ACATAGTCCTGAATTTAACAACAATCG 58.549 33.333 0.0 0.0 0.00 3.34 R
2943 3301 1.032014 TGCACTTCTTGGTCAAAGCC 58.968 50.000 0.0 0.0 35.69 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.998493 CTCCTCAAGTGCCCTAGGT 58.002 57.895 8.29 0.00 0.00 3.08
19 20 0.827368 CTCCTCAAGTGCCCTAGGTC 59.173 60.000 8.29 0.00 0.00 3.85
20 21 0.413832 TCCTCAAGTGCCCTAGGTCT 59.586 55.000 8.29 0.18 0.00 3.85
21 22 1.203313 TCCTCAAGTGCCCTAGGTCTT 60.203 52.381 8.29 6.65 0.00 3.01
22 23 1.208293 CCTCAAGTGCCCTAGGTCTTC 59.792 57.143 8.29 0.00 0.00 2.87
23 24 0.895530 TCAAGTGCCCTAGGTCTTCG 59.104 55.000 8.29 5.28 0.00 3.79
24 25 0.608640 CAAGTGCCCTAGGTCTTCGT 59.391 55.000 8.29 0.00 0.00 3.85
25 26 0.608640 AAGTGCCCTAGGTCTTCGTG 59.391 55.000 8.29 0.00 0.00 4.35
26 27 0.251653 AGTGCCCTAGGTCTTCGTGA 60.252 55.000 8.29 0.00 0.00 4.35
27 28 0.173708 GTGCCCTAGGTCTTCGTGAG 59.826 60.000 8.29 0.00 0.00 3.51
28 29 1.142097 GCCCTAGGTCTTCGTGAGC 59.858 63.158 8.29 0.00 43.05 4.26
29 30 1.605058 GCCCTAGGTCTTCGTGAGCA 61.605 60.000 8.29 0.00 44.98 4.26
30 31 0.895530 CCCTAGGTCTTCGTGAGCAA 59.104 55.000 8.29 0.00 44.98 3.91
31 32 1.134965 CCCTAGGTCTTCGTGAGCAAG 60.135 57.143 8.29 0.00 44.98 4.01
32 33 1.634702 CTAGGTCTTCGTGAGCAAGC 58.365 55.000 11.43 0.00 44.98 4.01
33 34 0.966179 TAGGTCTTCGTGAGCAAGCA 59.034 50.000 11.43 0.00 44.98 3.91
34 35 0.106708 AGGTCTTCGTGAGCAAGCAA 59.893 50.000 11.43 0.00 44.98 3.91
35 36 0.514691 GGTCTTCGTGAGCAAGCAAG 59.485 55.000 0.00 0.00 42.34 4.01
36 37 1.221414 GTCTTCGTGAGCAAGCAAGT 58.779 50.000 0.00 0.00 0.00 3.16
37 38 1.599542 GTCTTCGTGAGCAAGCAAGTT 59.400 47.619 0.00 0.00 0.00 2.66
38 39 1.599071 TCTTCGTGAGCAAGCAAGTTG 59.401 47.619 0.00 0.00 39.41 3.16
39 40 0.662619 TTCGTGAGCAAGCAAGTTGG 59.337 50.000 4.75 0.00 36.56 3.77
40 41 0.179059 TCGTGAGCAAGCAAGTTGGA 60.179 50.000 4.75 0.00 36.56 3.53
41 42 0.877071 CGTGAGCAAGCAAGTTGGAT 59.123 50.000 4.75 0.00 36.56 3.41
42 43 1.400629 CGTGAGCAAGCAAGTTGGATG 60.401 52.381 4.75 0.00 36.56 3.51
43 44 0.599558 TGAGCAAGCAAGTTGGATGC 59.400 50.000 4.75 0.00 44.15 3.91
44 45 0.599558 GAGCAAGCAAGTTGGATGCA 59.400 50.000 4.75 0.00 46.22 3.96
45 46 0.316204 AGCAAGCAAGTTGGATGCAC 59.684 50.000 4.75 0.00 46.22 4.57
46 47 0.032403 GCAAGCAAGTTGGATGCACA 59.968 50.000 4.75 0.00 46.22 4.57
47 48 1.774639 CAAGCAAGTTGGATGCACAC 58.225 50.000 4.75 0.00 46.22 3.82
48 49 0.675633 AAGCAAGTTGGATGCACACC 59.324 50.000 4.75 4.98 46.22 4.16
49 50 1.181098 AGCAAGTTGGATGCACACCC 61.181 55.000 4.75 2.41 46.22 4.61
50 51 1.462731 GCAAGTTGGATGCACACCCA 61.463 55.000 4.75 4.95 43.29 4.51
51 52 0.314935 CAAGTTGGATGCACACCCAC 59.685 55.000 8.94 8.22 31.11 4.61
52 53 0.185901 AAGTTGGATGCACACCCACT 59.814 50.000 11.14 11.14 35.39 4.00
53 54 0.185901 AGTTGGATGCACACCCACTT 59.814 50.000 11.14 0.00 30.80 3.16
54 55 1.423541 AGTTGGATGCACACCCACTTA 59.576 47.619 11.14 0.00 30.80 2.24
55 56 1.812571 GTTGGATGCACACCCACTTAG 59.187 52.381 8.94 0.00 31.11 2.18
56 57 1.064003 TGGATGCACACCCACTTAGT 58.936 50.000 8.94 0.00 0.00 2.24
57 58 1.423541 TGGATGCACACCCACTTAGTT 59.576 47.619 8.94 0.00 0.00 2.24
58 59 2.158534 TGGATGCACACCCACTTAGTTT 60.159 45.455 8.94 0.00 0.00 2.66
59 60 2.488153 GGATGCACACCCACTTAGTTTC 59.512 50.000 0.00 0.00 0.00 2.78
60 61 3.412386 GATGCACACCCACTTAGTTTCT 58.588 45.455 0.00 0.00 0.00 2.52
61 62 3.290948 TGCACACCCACTTAGTTTCTT 57.709 42.857 0.00 0.00 0.00 2.52
62 63 3.626930 TGCACACCCACTTAGTTTCTTT 58.373 40.909 0.00 0.00 0.00 2.52
63 64 4.020543 TGCACACCCACTTAGTTTCTTTT 58.979 39.130 0.00 0.00 0.00 2.27
64 65 4.142271 TGCACACCCACTTAGTTTCTTTTG 60.142 41.667 0.00 0.00 0.00 2.44
65 66 4.142249 GCACACCCACTTAGTTTCTTTTGT 60.142 41.667 0.00 0.00 0.00 2.83
66 67 5.623596 GCACACCCACTTAGTTTCTTTTGTT 60.624 40.000 0.00 0.00 0.00 2.83
67 68 5.804979 CACACCCACTTAGTTTCTTTTGTTG 59.195 40.000 0.00 0.00 0.00 3.33
68 69 5.712917 ACACCCACTTAGTTTCTTTTGTTGA 59.287 36.000 0.00 0.00 0.00 3.18
69 70 6.127730 ACACCCACTTAGTTTCTTTTGTTGAG 60.128 38.462 0.00 0.00 0.00 3.02
70 71 5.163550 ACCCACTTAGTTTCTTTTGTTGAGC 60.164 40.000 0.00 0.00 0.00 4.26
71 72 5.067805 CCCACTTAGTTTCTTTTGTTGAGCT 59.932 40.000 0.00 0.00 0.00 4.09
72 73 6.405842 CCCACTTAGTTTCTTTTGTTGAGCTT 60.406 38.462 0.00 0.00 0.00 3.74
73 74 7.035612 CCACTTAGTTTCTTTTGTTGAGCTTT 58.964 34.615 0.00 0.00 0.00 3.51
74 75 7.220875 CCACTTAGTTTCTTTTGTTGAGCTTTC 59.779 37.037 0.00 0.00 0.00 2.62
75 76 7.754924 CACTTAGTTTCTTTTGTTGAGCTTTCA 59.245 33.333 0.00 0.00 0.00 2.69
76 77 8.470002 ACTTAGTTTCTTTTGTTGAGCTTTCAT 58.530 29.630 0.00 0.00 0.00 2.57
77 78 9.950680 CTTAGTTTCTTTTGTTGAGCTTTCATA 57.049 29.630 0.00 0.00 0.00 2.15
78 79 9.730420 TTAGTTTCTTTTGTTGAGCTTTCATAC 57.270 29.630 0.00 0.00 0.00 2.39
79 80 7.771183 AGTTTCTTTTGTTGAGCTTTCATACA 58.229 30.769 0.00 0.00 0.00 2.29
80 81 8.416329 AGTTTCTTTTGTTGAGCTTTCATACAT 58.584 29.630 0.00 0.00 0.00 2.29
81 82 9.034544 GTTTCTTTTGTTGAGCTTTCATACATT 57.965 29.630 0.00 0.00 0.00 2.71
82 83 9.598517 TTTCTTTTGTTGAGCTTTCATACATTT 57.401 25.926 0.00 0.00 0.00 2.32
87 88 9.787532 TTTGTTGAGCTTTCATACATTTATAGC 57.212 29.630 0.00 0.00 0.00 2.97
88 89 8.737168 TGTTGAGCTTTCATACATTTATAGCT 57.263 30.769 0.00 0.00 39.95 3.32
92 93 7.976135 AGCTTTCATACATTTATAGCTCTGG 57.024 36.000 0.00 0.00 32.42 3.86
93 94 7.512992 AGCTTTCATACATTTATAGCTCTGGT 58.487 34.615 0.00 0.00 32.42 4.00
94 95 7.443575 AGCTTTCATACATTTATAGCTCTGGTG 59.556 37.037 0.00 0.00 32.42 4.17
95 96 7.496529 TTTCATACATTTATAGCTCTGGTGC 57.503 36.000 0.00 0.00 0.00 5.01
96 97 6.173427 TCATACATTTATAGCTCTGGTGCA 57.827 37.500 0.00 0.00 34.99 4.57
97 98 6.772605 TCATACATTTATAGCTCTGGTGCAT 58.227 36.000 0.00 0.00 34.99 3.96
98 99 6.875726 TCATACATTTATAGCTCTGGTGCATC 59.124 38.462 0.00 0.00 34.99 3.91
99 100 4.392940 ACATTTATAGCTCTGGTGCATCC 58.607 43.478 0.00 0.00 34.99 3.51
100 101 2.820059 TTATAGCTCTGGTGCATCCG 57.180 50.000 0.00 0.00 39.52 4.18
101 102 1.704641 TATAGCTCTGGTGCATCCGT 58.295 50.000 0.00 0.00 39.52 4.69
102 103 0.833287 ATAGCTCTGGTGCATCCGTT 59.167 50.000 0.00 0.00 39.52 4.44
103 104 0.108186 TAGCTCTGGTGCATCCGTTG 60.108 55.000 0.00 0.00 39.52 4.10
126 127 3.029483 TGGCAATCCATATTCCTTGCA 57.971 42.857 12.45 0.00 44.41 4.08
127 128 3.578978 TGGCAATCCATATTCCTTGCAT 58.421 40.909 12.45 0.00 44.41 3.96
128 129 3.968649 TGGCAATCCATATTCCTTGCATT 59.031 39.130 12.45 0.00 44.41 3.56
129 130 5.146298 TGGCAATCCATATTCCTTGCATTA 58.854 37.500 12.45 0.38 44.41 1.90
130 131 5.601729 TGGCAATCCATATTCCTTGCATTAA 59.398 36.000 12.45 0.00 44.41 1.40
131 132 5.928264 GGCAATCCATATTCCTTGCATTAAC 59.072 40.000 12.45 0.00 44.41 2.01
132 133 6.462768 GGCAATCCATATTCCTTGCATTAACA 60.463 38.462 12.45 0.00 44.41 2.41
133 134 7.156673 GCAATCCATATTCCTTGCATTAACAT 58.843 34.615 7.62 0.00 42.66 2.71
134 135 7.330208 GCAATCCATATTCCTTGCATTAACATC 59.670 37.037 7.62 0.00 42.66 3.06
135 136 8.361889 CAATCCATATTCCTTGCATTAACATCA 58.638 33.333 0.00 0.00 0.00 3.07
136 137 7.894753 TCCATATTCCTTGCATTAACATCAA 57.105 32.000 0.00 0.00 0.00 2.57
137 138 8.481492 TCCATATTCCTTGCATTAACATCAAT 57.519 30.769 0.00 0.00 0.00 2.57
138 139 8.579006 TCCATATTCCTTGCATTAACATCAATC 58.421 33.333 0.00 0.00 0.00 2.67
139 140 7.539710 CCATATTCCTTGCATTAACATCAATCG 59.460 37.037 0.00 0.00 0.00 3.34
140 141 4.898829 TCCTTGCATTAACATCAATCGG 57.101 40.909 0.00 0.00 0.00 4.18
141 142 4.269183 TCCTTGCATTAACATCAATCGGT 58.731 39.130 0.00 0.00 0.00 4.69
142 143 4.096231 TCCTTGCATTAACATCAATCGGTG 59.904 41.667 0.00 0.00 0.00 4.94
143 144 4.353737 CTTGCATTAACATCAATCGGTGG 58.646 43.478 0.00 0.00 0.00 4.61
144 145 2.687425 TGCATTAACATCAATCGGTGGG 59.313 45.455 0.00 0.00 0.00 4.61
145 146 2.543653 GCATTAACATCAATCGGTGGGC 60.544 50.000 0.00 0.00 0.00 5.36
146 147 2.498644 TTAACATCAATCGGTGGGCA 57.501 45.000 0.00 0.00 0.00 5.36
147 148 2.727123 TAACATCAATCGGTGGGCAT 57.273 45.000 0.00 0.00 0.00 4.40
148 149 1.392589 AACATCAATCGGTGGGCATC 58.607 50.000 0.00 0.00 0.00 3.91
149 150 0.548031 ACATCAATCGGTGGGCATCT 59.452 50.000 0.00 0.00 0.00 2.90
150 151 1.233019 CATCAATCGGTGGGCATCTC 58.767 55.000 0.00 0.00 0.00 2.75
151 152 0.109342 ATCAATCGGTGGGCATCTCC 59.891 55.000 0.00 0.00 0.00 3.71
152 153 1.224315 CAATCGGTGGGCATCTCCA 59.776 57.895 0.00 0.00 36.21 3.86
153 154 0.179009 CAATCGGTGGGCATCTCCAT 60.179 55.000 0.00 0.00 39.26 3.41
154 155 1.072173 CAATCGGTGGGCATCTCCATA 59.928 52.381 0.00 0.00 39.26 2.74
155 156 0.979665 ATCGGTGGGCATCTCCATAG 59.020 55.000 0.00 0.00 39.26 2.23
156 157 1.302033 CGGTGGGCATCTCCATAGC 60.302 63.158 0.00 0.00 39.26 2.97
162 163 1.542492 GGCATCTCCATAGCCCATTG 58.458 55.000 0.00 0.00 42.58 2.82
163 164 1.074405 GGCATCTCCATAGCCCATTGA 59.926 52.381 0.00 0.00 42.58 2.57
164 165 2.291411 GGCATCTCCATAGCCCATTGAT 60.291 50.000 0.00 0.00 42.58 2.57
165 166 3.428532 GCATCTCCATAGCCCATTGATT 58.571 45.455 0.00 0.00 0.00 2.57
166 167 4.568380 GGCATCTCCATAGCCCATTGATTA 60.568 45.833 0.00 0.00 42.58 1.75
167 168 4.639310 GCATCTCCATAGCCCATTGATTAG 59.361 45.833 0.00 0.00 0.00 1.73
168 169 4.292186 TCTCCATAGCCCATTGATTAGC 57.708 45.455 0.00 0.00 0.00 3.09
169 170 3.009473 TCTCCATAGCCCATTGATTAGCC 59.991 47.826 0.00 0.00 0.00 3.93
170 171 2.988859 TCCATAGCCCATTGATTAGCCT 59.011 45.455 0.00 0.00 0.00 4.58
171 172 3.009473 TCCATAGCCCATTGATTAGCCTC 59.991 47.826 0.00 0.00 0.00 4.70
172 173 2.839486 TAGCCCATTGATTAGCCTCG 57.161 50.000 0.00 0.00 0.00 4.63
173 174 0.839946 AGCCCATTGATTAGCCTCGT 59.160 50.000 0.00 0.00 0.00 4.18
174 175 1.212935 AGCCCATTGATTAGCCTCGTT 59.787 47.619 0.00 0.00 0.00 3.85
175 176 1.334869 GCCCATTGATTAGCCTCGTTG 59.665 52.381 0.00 0.00 0.00 4.10
176 177 2.917933 CCCATTGATTAGCCTCGTTGA 58.082 47.619 0.00 0.00 0.00 3.18
177 178 3.480470 CCCATTGATTAGCCTCGTTGAT 58.520 45.455 0.00 0.00 0.00 2.57
178 179 3.251729 CCCATTGATTAGCCTCGTTGATG 59.748 47.826 0.00 0.00 0.00 3.07
179 180 3.879295 CCATTGATTAGCCTCGTTGATGT 59.121 43.478 0.00 0.00 0.00 3.06
180 181 4.260907 CCATTGATTAGCCTCGTTGATGTG 60.261 45.833 0.00 0.00 0.00 3.21
181 182 3.885724 TGATTAGCCTCGTTGATGTGA 57.114 42.857 0.00 0.00 0.00 3.58
182 183 3.785486 TGATTAGCCTCGTTGATGTGAG 58.215 45.455 0.00 0.00 0.00 3.51
183 184 3.447229 TGATTAGCCTCGTTGATGTGAGA 59.553 43.478 0.00 0.00 34.04 3.27
184 185 2.941453 TAGCCTCGTTGATGTGAGAC 57.059 50.000 0.00 0.00 34.04 3.36
185 186 1.261480 AGCCTCGTTGATGTGAGACT 58.739 50.000 0.00 0.00 34.04 3.24
186 187 1.620819 AGCCTCGTTGATGTGAGACTT 59.379 47.619 0.00 0.00 34.04 3.01
187 188 2.037772 AGCCTCGTTGATGTGAGACTTT 59.962 45.455 0.00 0.00 34.04 2.66
188 189 2.413453 GCCTCGTTGATGTGAGACTTTC 59.587 50.000 0.00 0.00 34.04 2.62
189 190 3.862642 GCCTCGTTGATGTGAGACTTTCT 60.863 47.826 0.00 0.00 34.04 2.52
190 191 3.923461 CCTCGTTGATGTGAGACTTTCTC 59.077 47.826 0.00 0.00 43.65 2.87
191 192 3.914312 TCGTTGATGTGAGACTTTCTCC 58.086 45.455 0.76 0.00 42.73 3.71
192 193 3.574396 TCGTTGATGTGAGACTTTCTCCT 59.426 43.478 0.76 0.00 42.73 3.69
193 194 4.039245 TCGTTGATGTGAGACTTTCTCCTT 59.961 41.667 0.76 0.00 42.73 3.36
194 195 4.752101 CGTTGATGTGAGACTTTCTCCTTT 59.248 41.667 0.76 0.00 42.73 3.11
195 196 5.237344 CGTTGATGTGAGACTTTCTCCTTTT 59.763 40.000 0.76 0.00 42.73 2.27
196 197 6.238484 CGTTGATGTGAGACTTTCTCCTTTTT 60.238 38.462 0.76 0.00 42.73 1.94
197 198 6.624352 TGATGTGAGACTTTCTCCTTTTTG 57.376 37.500 0.76 0.00 42.73 2.44
198 199 6.122277 TGATGTGAGACTTTCTCCTTTTTGT 58.878 36.000 0.76 0.00 42.73 2.83
199 200 6.260936 TGATGTGAGACTTTCTCCTTTTTGTC 59.739 38.462 0.76 0.00 42.73 3.18
200 201 5.745227 TGTGAGACTTTCTCCTTTTTGTCT 58.255 37.500 0.76 0.00 42.73 3.41
201 202 6.180472 TGTGAGACTTTCTCCTTTTTGTCTT 58.820 36.000 0.76 0.00 42.73 3.01
202 203 6.316390 TGTGAGACTTTCTCCTTTTTGTCTTC 59.684 38.462 0.76 0.00 42.73 2.87
203 204 6.540551 GTGAGACTTTCTCCTTTTTGTCTTCT 59.459 38.462 0.76 0.00 42.73 2.85
204 205 6.763610 TGAGACTTTCTCCTTTTTGTCTTCTC 59.236 38.462 0.76 0.00 42.73 2.87
205 206 6.058833 AGACTTTCTCCTTTTTGTCTTCTCC 58.941 40.000 0.00 0.00 31.71 3.71
206 207 5.755849 ACTTTCTCCTTTTTGTCTTCTCCA 58.244 37.500 0.00 0.00 0.00 3.86
207 208 5.590663 ACTTTCTCCTTTTTGTCTTCTCCAC 59.409 40.000 0.00 0.00 0.00 4.02
208 209 4.771114 TCTCCTTTTTGTCTTCTCCACA 57.229 40.909 0.00 0.00 0.00 4.17
209 210 5.310409 TCTCCTTTTTGTCTTCTCCACAT 57.690 39.130 0.00 0.00 0.00 3.21
210 211 6.433847 TCTCCTTTTTGTCTTCTCCACATA 57.566 37.500 0.00 0.00 0.00 2.29
211 212 6.837312 TCTCCTTTTTGTCTTCTCCACATAA 58.163 36.000 0.00 0.00 0.00 1.90
212 213 6.710744 TCTCCTTTTTGTCTTCTCCACATAAC 59.289 38.462 0.00 0.00 0.00 1.89
213 214 5.768164 TCCTTTTTGTCTTCTCCACATAACC 59.232 40.000 0.00 0.00 0.00 2.85
214 215 5.048013 CCTTTTTGTCTTCTCCACATAACCC 60.048 44.000 0.00 0.00 0.00 4.11
215 216 3.713826 TTGTCTTCTCCACATAACCCC 57.286 47.619 0.00 0.00 0.00 4.95
216 217 1.913419 TGTCTTCTCCACATAACCCCC 59.087 52.381 0.00 0.00 0.00 5.40
217 218 2.197465 GTCTTCTCCACATAACCCCCT 58.803 52.381 0.00 0.00 0.00 4.79
218 219 2.170817 GTCTTCTCCACATAACCCCCTC 59.829 54.545 0.00 0.00 0.00 4.30
219 220 2.196595 CTTCTCCACATAACCCCCTCA 58.803 52.381 0.00 0.00 0.00 3.86
220 221 2.587060 TCTCCACATAACCCCCTCAT 57.413 50.000 0.00 0.00 0.00 2.90
221 222 2.858644 TCTCCACATAACCCCCTCATT 58.141 47.619 0.00 0.00 0.00 2.57
222 223 4.015617 TCTCCACATAACCCCCTCATTA 57.984 45.455 0.00 0.00 0.00 1.90
223 224 4.577096 TCTCCACATAACCCCCTCATTAT 58.423 43.478 0.00 0.00 0.00 1.28
224 225 5.733000 TCTCCACATAACCCCCTCATTATA 58.267 41.667 0.00 0.00 0.00 0.98
225 226 6.339220 TCTCCACATAACCCCCTCATTATAT 58.661 40.000 0.00 0.00 0.00 0.86
226 227 6.797540 TCTCCACATAACCCCCTCATTATATT 59.202 38.462 0.00 0.00 0.00 1.28
227 228 7.027874 TCCACATAACCCCCTCATTATATTC 57.972 40.000 0.00 0.00 0.00 1.75
228 229 6.797540 TCCACATAACCCCCTCATTATATTCT 59.202 38.462 0.00 0.00 0.00 2.40
229 230 7.964867 TCCACATAACCCCCTCATTATATTCTA 59.035 37.037 0.00 0.00 0.00 2.10
230 231 8.781951 CCACATAACCCCCTCATTATATTCTAT 58.218 37.037 0.00 0.00 0.00 1.98
233 234 9.853177 CATAACCCCCTCATTATATTCTATTCC 57.147 37.037 0.00 0.00 0.00 3.01
234 235 7.905144 AACCCCCTCATTATATTCTATTCCA 57.095 36.000 0.00 0.00 0.00 3.53
235 236 7.272144 ACCCCCTCATTATATTCTATTCCAC 57.728 40.000 0.00 0.00 0.00 4.02
236 237 6.217693 ACCCCCTCATTATATTCTATTCCACC 59.782 42.308 0.00 0.00 0.00 4.61
237 238 6.353951 CCCCCTCATTATATTCTATTCCACCC 60.354 46.154 0.00 0.00 0.00 4.61
238 239 6.217487 CCCCTCATTATATTCTATTCCACCCA 59.783 42.308 0.00 0.00 0.00 4.51
239 240 7.091811 CCCCTCATTATATTCTATTCCACCCAT 60.092 40.741 0.00 0.00 0.00 4.00
240 241 9.003145 CCCTCATTATATTCTATTCCACCCATA 57.997 37.037 0.00 0.00 0.00 2.74
244 245 9.113838 CATTATATTCTATTCCACCCATAGTGC 57.886 37.037 0.00 0.00 45.83 4.40
245 246 6.959606 ATATTCTATTCCACCCATAGTGCT 57.040 37.500 0.00 0.00 45.83 4.40
246 247 9.555411 TTATATTCTATTCCACCCATAGTGCTA 57.445 33.333 0.00 0.00 45.83 3.49
247 248 6.959606 ATTCTATTCCACCCATAGTGCTAT 57.040 37.500 0.00 0.00 45.83 2.97
248 249 5.745312 TCTATTCCACCCATAGTGCTATG 57.255 43.478 11.22 11.22 45.83 2.23
249 250 5.155161 TCTATTCCACCCATAGTGCTATGT 58.845 41.667 15.52 0.00 45.83 2.29
250 251 3.838244 TTCCACCCATAGTGCTATGTC 57.162 47.619 15.52 0.00 45.83 3.06
251 252 2.047061 TCCACCCATAGTGCTATGTCC 58.953 52.381 15.52 0.00 45.83 4.02
252 253 1.768275 CCACCCATAGTGCTATGTCCA 59.232 52.381 15.52 0.00 45.83 4.02
253 254 2.373169 CCACCCATAGTGCTATGTCCAT 59.627 50.000 15.52 0.00 45.83 3.41
254 255 3.405831 CACCCATAGTGCTATGTCCATG 58.594 50.000 15.52 6.64 40.90 3.66
255 256 3.071457 CACCCATAGTGCTATGTCCATGA 59.929 47.826 15.52 0.00 40.90 3.07
256 257 3.071602 ACCCATAGTGCTATGTCCATGAC 59.928 47.826 15.52 0.00 40.90 3.06
257 258 3.326006 CCCATAGTGCTATGTCCATGACT 59.674 47.826 15.52 0.00 40.90 3.41
258 259 4.562347 CCCATAGTGCTATGTCCATGACTC 60.562 50.000 15.52 0.00 40.90 3.36
259 260 2.879002 AGTGCTATGTCCATGACTCG 57.121 50.000 0.00 0.00 33.15 4.18
260 261 1.202463 AGTGCTATGTCCATGACTCGC 60.202 52.381 0.00 0.00 33.15 5.03
261 262 0.249031 TGCTATGTCCATGACTCGCG 60.249 55.000 0.00 0.00 33.15 5.87
262 263 1.552348 GCTATGTCCATGACTCGCGC 61.552 60.000 0.00 0.00 33.15 6.86
263 264 0.031314 CTATGTCCATGACTCGCGCT 59.969 55.000 5.56 0.00 33.15 5.92
264 265 0.030773 TATGTCCATGACTCGCGCTC 59.969 55.000 5.56 0.00 33.15 5.03
265 266 1.948721 ATGTCCATGACTCGCGCTCA 61.949 55.000 5.56 4.80 33.15 4.26
266 267 1.227089 GTCCATGACTCGCGCTCAT 60.227 57.895 5.56 11.95 0.00 2.90
267 268 0.030773 GTCCATGACTCGCGCTCATA 59.969 55.000 15.97 2.86 0.00 2.15
268 269 0.961753 TCCATGACTCGCGCTCATAT 59.038 50.000 15.97 0.00 0.00 1.78
269 270 2.095212 GTCCATGACTCGCGCTCATATA 60.095 50.000 15.97 7.17 0.00 0.86
270 271 2.755103 TCCATGACTCGCGCTCATATAT 59.245 45.455 15.97 0.00 0.00 0.86
271 272 3.193479 TCCATGACTCGCGCTCATATATT 59.807 43.478 15.97 0.00 0.00 1.28
272 273 3.305361 CCATGACTCGCGCTCATATATTG 59.695 47.826 15.97 7.62 0.00 1.90
273 274 2.328473 TGACTCGCGCTCATATATTGC 58.672 47.619 5.56 0.00 0.00 3.56
283 284 5.835911 GCTCATATATTGCGCGATATGAT 57.164 39.130 31.79 20.46 41.77 2.45
284 285 6.934561 GCTCATATATTGCGCGATATGATA 57.065 37.500 31.79 17.81 41.77 2.15
285 286 6.746367 GCTCATATATTGCGCGATATGATAC 58.254 40.000 31.79 22.48 41.77 2.24
286 287 6.451700 GCTCATATATTGCGCGATATGATACG 60.452 42.308 31.79 21.53 41.77 3.06
297 298 5.487552 CGATATGATACGCTCTTTCACAC 57.512 43.478 0.00 0.00 0.00 3.82
298 299 4.976116 CGATATGATACGCTCTTTCACACA 59.024 41.667 0.00 0.00 0.00 3.72
299 300 5.631096 CGATATGATACGCTCTTTCACACAT 59.369 40.000 0.00 0.00 0.00 3.21
300 301 6.801862 CGATATGATACGCTCTTTCACACATA 59.198 38.462 0.00 0.00 0.00 2.29
301 302 7.326063 CGATATGATACGCTCTTTCACACATAA 59.674 37.037 0.00 0.00 0.00 1.90
302 303 8.887036 ATATGATACGCTCTTTCACACATAAA 57.113 30.769 0.00 0.00 0.00 1.40
336 337 8.310122 ACAAGAAATATGGCCAATTATGACTT 57.690 30.769 10.96 10.39 0.00 3.01
349 350 6.070881 CCAATTATGACTTCCCATTTTGGTCA 60.071 38.462 0.00 0.00 40.43 4.02
538 540 2.730934 ATGAGCCTAGACCACGTAGA 57.269 50.000 0.00 0.00 0.00 2.59
610 613 2.910688 GGATCGGTCCAAATCAGCTA 57.089 50.000 10.69 0.00 44.42 3.32
623 626 7.014230 GTCCAAATCAGCTATTTTAATGGGCTA 59.986 37.037 0.00 0.00 35.54 3.93
709 712 1.529010 CAGTTCTTGGGCTGTGGCA 60.529 57.895 0.00 0.00 40.87 4.92
991 1035 6.842280 ACCCAGTAGTATCATTACACCACATA 59.158 38.462 0.00 0.00 0.00 2.29
1012 1157 2.036958 TCATAAGATGGCACCAACCG 57.963 50.000 0.00 0.00 0.00 4.44
1078 1223 5.300752 TCTTTAGTGAGAAAAGGTCAGCAG 58.699 41.667 0.00 0.00 35.18 4.24
1678 1828 3.508744 AACAAGCCAACACTCACTTTG 57.491 42.857 0.00 0.00 0.00 2.77
1760 1910 0.438830 GCTCTAACAACTCAACGCCG 59.561 55.000 0.00 0.00 0.00 6.46
1976 2234 8.415950 ACATACAATATTTTTGGTGTTCCTGA 57.584 30.769 0.00 0.00 34.23 3.86
2344 2605 2.738314 GTTTTCCATTTCATGCAGGTGC 59.262 45.455 0.00 0.00 42.50 5.01
2942 3300 4.014406 TCACGTACTAGAGATGCCTTTGA 58.986 43.478 0.00 0.00 0.00 2.69
2943 3301 4.096532 TCACGTACTAGAGATGCCTTTGAG 59.903 45.833 0.00 0.00 0.00 3.02
2944 3302 3.381908 ACGTACTAGAGATGCCTTTGAGG 59.618 47.826 0.00 0.00 38.80 3.86
3263 3623 6.381420 AGGAGATACTGTAGAAAGCAAAGCTA 59.619 38.462 0.00 0.00 38.25 3.32
3430 4557 1.139734 CTCTGCATCTGCGTACGGT 59.860 57.895 18.39 0.00 45.83 4.83
3435 4562 0.804544 GCATCTGCGTACGGTGCTAA 60.805 55.000 18.39 0.00 33.25 3.09
3543 4670 0.031449 GGTGCTGCTAGAGTCGATCC 59.969 60.000 0.00 0.00 0.00 3.36
3581 4708 3.751246 CGGCGGGAGGACACGTTA 61.751 66.667 0.00 0.00 45.51 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.827368 GACCTAGGGCACTTGAGGAG 59.173 60.000 10.77 0.00 33.04 3.69
1 2 0.413832 AGACCTAGGGCACTTGAGGA 59.586 55.000 19.45 0.00 33.04 3.71
2 3 1.208293 GAAGACCTAGGGCACTTGAGG 59.792 57.143 19.45 3.01 35.05 3.86
3 4 1.134965 CGAAGACCTAGGGCACTTGAG 60.135 57.143 19.45 9.59 0.00 3.02
4 5 0.895530 CGAAGACCTAGGGCACTTGA 59.104 55.000 19.45 0.00 0.00 3.02
5 6 0.608640 ACGAAGACCTAGGGCACTTG 59.391 55.000 19.45 9.95 0.00 3.16
6 7 0.608640 CACGAAGACCTAGGGCACTT 59.391 55.000 19.45 16.58 0.00 3.16
7 8 0.251653 TCACGAAGACCTAGGGCACT 60.252 55.000 19.45 2.41 0.00 4.40
8 9 0.173708 CTCACGAAGACCTAGGGCAC 59.826 60.000 19.45 9.67 0.00 5.01
9 10 1.605058 GCTCACGAAGACCTAGGGCA 61.605 60.000 19.45 0.00 0.00 5.36
10 11 1.142097 GCTCACGAAGACCTAGGGC 59.858 63.158 14.81 11.09 0.00 5.19
11 12 0.895530 TTGCTCACGAAGACCTAGGG 59.104 55.000 14.81 0.00 0.00 3.53
12 13 1.737363 GCTTGCTCACGAAGACCTAGG 60.737 57.143 7.41 7.41 0.00 3.02
13 14 1.067565 TGCTTGCTCACGAAGACCTAG 60.068 52.381 0.00 0.00 0.00 3.02
14 15 0.966179 TGCTTGCTCACGAAGACCTA 59.034 50.000 0.00 0.00 0.00 3.08
15 16 0.106708 TTGCTTGCTCACGAAGACCT 59.893 50.000 0.00 0.00 0.00 3.85
16 17 0.514691 CTTGCTTGCTCACGAAGACC 59.485 55.000 0.00 0.00 0.00 3.85
17 18 1.221414 ACTTGCTTGCTCACGAAGAC 58.779 50.000 0.00 0.00 0.00 3.01
18 19 1.599071 CAACTTGCTTGCTCACGAAGA 59.401 47.619 0.00 0.00 0.00 2.87
19 20 1.334419 CCAACTTGCTTGCTCACGAAG 60.334 52.381 0.00 0.00 0.00 3.79
20 21 0.662619 CCAACTTGCTTGCTCACGAA 59.337 50.000 0.00 0.00 0.00 3.85
21 22 0.179059 TCCAACTTGCTTGCTCACGA 60.179 50.000 0.00 0.00 0.00 4.35
22 23 0.877071 ATCCAACTTGCTTGCTCACG 59.123 50.000 0.00 0.00 0.00 4.35
23 24 1.668047 GCATCCAACTTGCTTGCTCAC 60.668 52.381 6.83 0.00 37.14 3.51
24 25 0.599558 GCATCCAACTTGCTTGCTCA 59.400 50.000 6.83 0.00 37.14 4.26
25 26 0.599558 TGCATCCAACTTGCTTGCTC 59.400 50.000 12.63 0.00 40.77 4.26
26 27 0.316204 GTGCATCCAACTTGCTTGCT 59.684 50.000 12.63 0.00 40.77 3.91
27 28 0.032403 TGTGCATCCAACTTGCTTGC 59.968 50.000 0.00 7.05 40.77 4.01
28 29 1.603678 GGTGTGCATCCAACTTGCTTG 60.604 52.381 0.00 0.00 40.77 4.01
29 30 0.675633 GGTGTGCATCCAACTTGCTT 59.324 50.000 0.00 0.00 40.77 3.91
30 31 1.181098 GGGTGTGCATCCAACTTGCT 61.181 55.000 11.91 0.00 40.77 3.91
31 32 1.290009 GGGTGTGCATCCAACTTGC 59.710 57.895 11.91 0.00 40.55 4.01
32 33 0.314935 GTGGGTGTGCATCCAACTTG 59.685 55.000 5.65 0.00 44.47 3.16
33 34 0.185901 AGTGGGTGTGCATCCAACTT 59.814 50.000 13.15 0.00 44.47 2.66
34 35 0.185901 AAGTGGGTGTGCATCCAACT 59.814 50.000 13.15 13.15 44.47 3.16
35 36 1.812571 CTAAGTGGGTGTGCATCCAAC 59.187 52.381 5.65 9.55 44.47 3.77
36 37 1.423541 ACTAAGTGGGTGTGCATCCAA 59.576 47.619 5.65 0.00 44.47 3.53
37 38 1.064003 ACTAAGTGGGTGTGCATCCA 58.936 50.000 0.00 0.00 39.79 3.41
38 39 2.200373 AACTAAGTGGGTGTGCATCC 57.800 50.000 0.00 0.00 0.00 3.51
39 40 3.412386 AGAAACTAAGTGGGTGTGCATC 58.588 45.455 0.00 0.00 0.00 3.91
40 41 3.508845 AGAAACTAAGTGGGTGTGCAT 57.491 42.857 0.00 0.00 0.00 3.96
41 42 3.290948 AAGAAACTAAGTGGGTGTGCA 57.709 42.857 0.00 0.00 0.00 4.57
42 43 4.142249 ACAAAAGAAACTAAGTGGGTGTGC 60.142 41.667 0.00 0.00 0.00 4.57
43 44 5.576447 ACAAAAGAAACTAAGTGGGTGTG 57.424 39.130 0.00 0.00 0.00 3.82
44 45 5.712917 TCAACAAAAGAAACTAAGTGGGTGT 59.287 36.000 0.00 0.00 0.00 4.16
45 46 6.202516 TCAACAAAAGAAACTAAGTGGGTG 57.797 37.500 0.00 0.00 0.00 4.61
46 47 5.163550 GCTCAACAAAAGAAACTAAGTGGGT 60.164 40.000 0.00 0.00 0.00 4.51
47 48 5.067805 AGCTCAACAAAAGAAACTAAGTGGG 59.932 40.000 0.00 0.00 0.00 4.61
48 49 6.136541 AGCTCAACAAAAGAAACTAAGTGG 57.863 37.500 0.00 0.00 0.00 4.00
49 50 7.754924 TGAAAGCTCAACAAAAGAAACTAAGTG 59.245 33.333 0.00 0.00 0.00 3.16
50 51 7.826690 TGAAAGCTCAACAAAAGAAACTAAGT 58.173 30.769 0.00 0.00 0.00 2.24
51 52 8.862550 ATGAAAGCTCAACAAAAGAAACTAAG 57.137 30.769 0.00 0.00 34.49 2.18
52 53 9.730420 GTATGAAAGCTCAACAAAAGAAACTAA 57.270 29.630 0.00 0.00 34.49 2.24
53 54 8.898761 TGTATGAAAGCTCAACAAAAGAAACTA 58.101 29.630 0.00 0.00 34.49 2.24
54 55 7.771183 TGTATGAAAGCTCAACAAAAGAAACT 58.229 30.769 0.00 0.00 34.49 2.66
55 56 7.985634 TGTATGAAAGCTCAACAAAAGAAAC 57.014 32.000 0.00 0.00 34.49 2.78
56 57 9.598517 AAATGTATGAAAGCTCAACAAAAGAAA 57.401 25.926 0.00 0.00 34.49 2.52
61 62 9.787532 GCTATAAATGTATGAAAGCTCAACAAA 57.212 29.630 0.00 0.00 34.49 2.83
62 63 9.177608 AGCTATAAATGTATGAAAGCTCAACAA 57.822 29.630 0.00 0.00 33.78 2.83
63 64 8.737168 AGCTATAAATGTATGAAAGCTCAACA 57.263 30.769 0.00 0.00 33.78 3.33
68 69 7.443575 CACCAGAGCTATAAATGTATGAAAGCT 59.556 37.037 0.00 0.00 41.29 3.74
69 70 7.579726 CACCAGAGCTATAAATGTATGAAAGC 58.420 38.462 0.00 0.00 0.00 3.51
70 71 7.227314 TGCACCAGAGCTATAAATGTATGAAAG 59.773 37.037 0.00 0.00 34.99 2.62
71 72 7.053498 TGCACCAGAGCTATAAATGTATGAAA 58.947 34.615 0.00 0.00 34.99 2.69
72 73 6.591001 TGCACCAGAGCTATAAATGTATGAA 58.409 36.000 0.00 0.00 34.99 2.57
73 74 6.173427 TGCACCAGAGCTATAAATGTATGA 57.827 37.500 0.00 0.00 34.99 2.15
74 75 6.093219 GGATGCACCAGAGCTATAAATGTATG 59.907 42.308 0.00 0.00 38.79 2.39
75 76 6.176183 GGATGCACCAGAGCTATAAATGTAT 58.824 40.000 0.00 0.00 38.79 2.29
76 77 5.551233 GGATGCACCAGAGCTATAAATGTA 58.449 41.667 0.00 0.00 38.79 2.29
77 78 4.392940 GGATGCACCAGAGCTATAAATGT 58.607 43.478 0.00 0.00 38.79 2.71
78 79 3.434641 CGGATGCACCAGAGCTATAAATG 59.565 47.826 0.00 0.00 38.90 2.32
79 80 3.071602 ACGGATGCACCAGAGCTATAAAT 59.928 43.478 0.00 0.00 38.90 1.40
80 81 2.434336 ACGGATGCACCAGAGCTATAAA 59.566 45.455 0.00 0.00 38.90 1.40
81 82 2.039418 ACGGATGCACCAGAGCTATAA 58.961 47.619 0.00 0.00 38.90 0.98
82 83 1.704641 ACGGATGCACCAGAGCTATA 58.295 50.000 0.00 0.00 38.90 1.31
83 84 0.833287 AACGGATGCACCAGAGCTAT 59.167 50.000 0.00 0.00 38.90 2.97
84 85 0.108186 CAACGGATGCACCAGAGCTA 60.108 55.000 0.00 0.00 38.90 3.32
85 86 1.376424 CAACGGATGCACCAGAGCT 60.376 57.895 0.00 0.00 38.90 4.09
86 87 3.181367 CAACGGATGCACCAGAGC 58.819 61.111 0.00 0.00 38.90 4.09
107 108 4.612264 AATGCAAGGAATATGGATTGCC 57.388 40.909 13.44 0.00 45.76 4.52
108 109 6.514947 TGTTAATGCAAGGAATATGGATTGC 58.485 36.000 10.53 10.53 46.36 3.56
109 110 8.361889 TGATGTTAATGCAAGGAATATGGATTG 58.638 33.333 0.00 0.00 38.93 2.67
110 111 8.481492 TGATGTTAATGCAAGGAATATGGATT 57.519 30.769 0.00 0.00 41.06 3.01
111 112 8.481492 TTGATGTTAATGCAAGGAATATGGAT 57.519 30.769 0.00 0.00 0.00 3.41
112 113 7.894753 TTGATGTTAATGCAAGGAATATGGA 57.105 32.000 0.00 0.00 0.00 3.41
113 114 7.539710 CGATTGATGTTAATGCAAGGAATATGG 59.460 37.037 0.00 0.00 0.00 2.74
114 115 7.539710 CCGATTGATGTTAATGCAAGGAATATG 59.460 37.037 0.00 0.00 0.00 1.78
115 116 7.231317 ACCGATTGATGTTAATGCAAGGAATAT 59.769 33.333 0.00 0.00 0.00 1.28
116 117 6.545666 ACCGATTGATGTTAATGCAAGGAATA 59.454 34.615 0.00 0.00 0.00 1.75
117 118 5.360714 ACCGATTGATGTTAATGCAAGGAAT 59.639 36.000 0.00 0.00 0.00 3.01
118 119 4.704540 ACCGATTGATGTTAATGCAAGGAA 59.295 37.500 0.00 0.00 0.00 3.36
119 120 4.096231 CACCGATTGATGTTAATGCAAGGA 59.904 41.667 0.00 0.00 0.00 3.36
120 121 4.353737 CACCGATTGATGTTAATGCAAGG 58.646 43.478 0.00 0.00 0.00 3.61
121 122 4.353737 CCACCGATTGATGTTAATGCAAG 58.646 43.478 0.00 0.00 0.00 4.01
122 123 3.130164 CCCACCGATTGATGTTAATGCAA 59.870 43.478 0.00 0.00 0.00 4.08
123 124 2.687425 CCCACCGATTGATGTTAATGCA 59.313 45.455 0.00 0.00 0.00 3.96
124 125 2.543653 GCCCACCGATTGATGTTAATGC 60.544 50.000 0.00 0.00 0.00 3.56
125 126 2.687425 TGCCCACCGATTGATGTTAATG 59.313 45.455 0.00 0.00 0.00 1.90
126 127 3.011566 TGCCCACCGATTGATGTTAAT 57.988 42.857 0.00 0.00 0.00 1.40
127 128 2.498644 TGCCCACCGATTGATGTTAA 57.501 45.000 0.00 0.00 0.00 2.01
128 129 2.172505 AGATGCCCACCGATTGATGTTA 59.827 45.455 0.00 0.00 0.00 2.41
129 130 1.064463 AGATGCCCACCGATTGATGTT 60.064 47.619 0.00 0.00 0.00 2.71
130 131 0.548031 AGATGCCCACCGATTGATGT 59.452 50.000 0.00 0.00 0.00 3.06
131 132 1.233019 GAGATGCCCACCGATTGATG 58.767 55.000 0.00 0.00 0.00 3.07
132 133 0.109342 GGAGATGCCCACCGATTGAT 59.891 55.000 0.00 0.00 0.00 2.57
133 134 1.271127 TGGAGATGCCCACCGATTGA 61.271 55.000 0.00 0.00 34.97 2.57
134 135 0.179009 ATGGAGATGCCCACCGATTG 60.179 55.000 0.00 0.00 39.34 2.67
135 136 1.349026 CTATGGAGATGCCCACCGATT 59.651 52.381 0.00 0.00 39.34 3.34
136 137 0.979665 CTATGGAGATGCCCACCGAT 59.020 55.000 0.00 0.00 39.34 4.18
137 138 1.758440 GCTATGGAGATGCCCACCGA 61.758 60.000 0.00 0.00 39.34 4.69
138 139 1.302033 GCTATGGAGATGCCCACCG 60.302 63.158 0.00 0.00 39.34 4.94
139 140 1.073897 GGCTATGGAGATGCCCACC 59.926 63.158 0.00 0.00 40.71 4.61
140 141 4.809070 GGCTATGGAGATGCCCAC 57.191 61.111 0.00 0.00 40.71 4.61
143 144 1.074405 TCAATGGGCTATGGAGATGCC 59.926 52.381 0.00 0.00 45.42 4.40
144 145 2.574006 TCAATGGGCTATGGAGATGC 57.426 50.000 0.00 0.00 0.00 3.91
145 146 4.639310 GCTAATCAATGGGCTATGGAGATG 59.361 45.833 0.00 0.00 0.00 2.90
146 147 4.324874 GGCTAATCAATGGGCTATGGAGAT 60.325 45.833 0.00 0.00 0.00 2.75
147 148 3.009473 GGCTAATCAATGGGCTATGGAGA 59.991 47.826 0.00 0.00 0.00 3.71
148 149 3.009916 AGGCTAATCAATGGGCTATGGAG 59.990 47.826 0.00 0.00 34.14 3.86
149 150 2.988859 AGGCTAATCAATGGGCTATGGA 59.011 45.455 0.00 0.00 34.14 3.41
150 151 3.350833 GAGGCTAATCAATGGGCTATGG 58.649 50.000 0.00 0.00 36.02 2.74
151 152 3.005554 CGAGGCTAATCAATGGGCTATG 58.994 50.000 0.00 0.00 36.02 2.23
152 153 2.639839 ACGAGGCTAATCAATGGGCTAT 59.360 45.455 0.00 0.00 36.02 2.97
153 154 2.047061 ACGAGGCTAATCAATGGGCTA 58.953 47.619 0.00 0.00 36.02 3.93
154 155 0.839946 ACGAGGCTAATCAATGGGCT 59.160 50.000 0.00 0.00 38.56 5.19
155 156 1.334869 CAACGAGGCTAATCAATGGGC 59.665 52.381 0.00 0.00 0.00 5.36
156 157 2.917933 TCAACGAGGCTAATCAATGGG 58.082 47.619 0.00 0.00 0.00 4.00
157 158 3.879295 ACATCAACGAGGCTAATCAATGG 59.121 43.478 0.00 0.00 0.00 3.16
158 159 4.571984 TCACATCAACGAGGCTAATCAATG 59.428 41.667 0.00 0.00 0.00 2.82
159 160 4.769688 TCACATCAACGAGGCTAATCAAT 58.230 39.130 0.00 0.00 0.00 2.57
160 161 4.081697 TCTCACATCAACGAGGCTAATCAA 60.082 41.667 0.00 0.00 0.00 2.57
161 162 3.447229 TCTCACATCAACGAGGCTAATCA 59.553 43.478 0.00 0.00 0.00 2.57
162 163 3.799420 GTCTCACATCAACGAGGCTAATC 59.201 47.826 0.00 0.00 31.04 1.75
163 164 3.449018 AGTCTCACATCAACGAGGCTAAT 59.551 43.478 0.00 0.00 42.30 1.73
164 165 2.826128 AGTCTCACATCAACGAGGCTAA 59.174 45.455 0.00 0.00 42.30 3.09
165 166 2.447443 AGTCTCACATCAACGAGGCTA 58.553 47.619 0.00 0.00 42.30 3.93
166 167 1.261480 AGTCTCACATCAACGAGGCT 58.739 50.000 0.00 0.00 39.36 4.58
167 168 2.086054 AAGTCTCACATCAACGAGGC 57.914 50.000 0.00 0.00 33.97 4.70
168 169 3.919216 AGAAAGTCTCACATCAACGAGG 58.081 45.455 0.00 0.00 0.00 4.63
169 170 3.923461 GGAGAAAGTCTCACATCAACGAG 59.077 47.826 7.52 0.00 45.12 4.18
170 171 3.574396 AGGAGAAAGTCTCACATCAACGA 59.426 43.478 7.52 0.00 45.12 3.85
171 172 3.919216 AGGAGAAAGTCTCACATCAACG 58.081 45.455 7.52 0.00 45.12 4.10
172 173 6.625873 AAAAGGAGAAAGTCTCACATCAAC 57.374 37.500 7.52 0.00 45.12 3.18
173 174 6.603201 ACAAAAAGGAGAAAGTCTCACATCAA 59.397 34.615 7.52 0.00 45.12 2.57
174 175 6.122277 ACAAAAAGGAGAAAGTCTCACATCA 58.878 36.000 7.52 0.00 45.12 3.07
175 176 6.484977 AGACAAAAAGGAGAAAGTCTCACATC 59.515 38.462 7.52 0.00 45.12 3.06
176 177 6.360618 AGACAAAAAGGAGAAAGTCTCACAT 58.639 36.000 7.52 0.00 45.12 3.21
177 178 5.745227 AGACAAAAAGGAGAAAGTCTCACA 58.255 37.500 7.52 0.00 45.12 3.58
178 179 6.540551 AGAAGACAAAAAGGAGAAAGTCTCAC 59.459 38.462 7.52 0.00 45.12 3.51
179 180 6.653989 AGAAGACAAAAAGGAGAAAGTCTCA 58.346 36.000 7.52 0.00 45.12 3.27
180 181 6.203915 GGAGAAGACAAAAAGGAGAAAGTCTC 59.796 42.308 0.00 0.00 42.66 3.36
181 182 6.058833 GGAGAAGACAAAAAGGAGAAAGTCT 58.941 40.000 0.00 0.00 37.90 3.24
182 183 5.823045 TGGAGAAGACAAAAAGGAGAAAGTC 59.177 40.000 0.00 0.00 0.00 3.01
183 184 5.590663 GTGGAGAAGACAAAAAGGAGAAAGT 59.409 40.000 0.00 0.00 0.00 2.66
184 185 5.590259 TGTGGAGAAGACAAAAAGGAGAAAG 59.410 40.000 0.00 0.00 0.00 2.62
185 186 5.505780 TGTGGAGAAGACAAAAAGGAGAAA 58.494 37.500 0.00 0.00 0.00 2.52
186 187 5.110814 TGTGGAGAAGACAAAAAGGAGAA 57.889 39.130 0.00 0.00 0.00 2.87
187 188 4.771114 TGTGGAGAAGACAAAAAGGAGA 57.229 40.909 0.00 0.00 0.00 3.71
188 189 6.072452 GGTTATGTGGAGAAGACAAAAAGGAG 60.072 42.308 0.00 0.00 0.00 3.69
189 190 5.768164 GGTTATGTGGAGAAGACAAAAAGGA 59.232 40.000 0.00 0.00 0.00 3.36
190 191 5.048013 GGGTTATGTGGAGAAGACAAAAAGG 60.048 44.000 0.00 0.00 0.00 3.11
191 192 5.048013 GGGGTTATGTGGAGAAGACAAAAAG 60.048 44.000 0.00 0.00 0.00 2.27
192 193 4.830600 GGGGTTATGTGGAGAAGACAAAAA 59.169 41.667 0.00 0.00 0.00 1.94
193 194 4.403734 GGGGTTATGTGGAGAAGACAAAA 58.596 43.478 0.00 0.00 0.00 2.44
194 195 3.245122 GGGGGTTATGTGGAGAAGACAAA 60.245 47.826 0.00 0.00 0.00 2.83
195 196 2.307686 GGGGGTTATGTGGAGAAGACAA 59.692 50.000 0.00 0.00 0.00 3.18
196 197 1.913419 GGGGGTTATGTGGAGAAGACA 59.087 52.381 0.00 0.00 0.00 3.41
197 198 2.170817 GAGGGGGTTATGTGGAGAAGAC 59.829 54.545 0.00 0.00 0.00 3.01
198 199 2.225779 TGAGGGGGTTATGTGGAGAAGA 60.226 50.000 0.00 0.00 0.00 2.87
199 200 2.196595 TGAGGGGGTTATGTGGAGAAG 58.803 52.381 0.00 0.00 0.00 2.85
200 201 2.352561 TGAGGGGGTTATGTGGAGAA 57.647 50.000 0.00 0.00 0.00 2.87
201 202 2.587060 ATGAGGGGGTTATGTGGAGA 57.413 50.000 0.00 0.00 0.00 3.71
202 203 6.642733 ATATAATGAGGGGGTTATGTGGAG 57.357 41.667 0.00 0.00 0.00 3.86
203 204 6.797540 AGAATATAATGAGGGGGTTATGTGGA 59.202 38.462 0.00 0.00 0.00 4.02
204 205 7.032598 AGAATATAATGAGGGGGTTATGTGG 57.967 40.000 0.00 0.00 0.00 4.17
207 208 9.853177 GGAATAGAATATAATGAGGGGGTTATG 57.147 37.037 0.00 0.00 0.00 1.90
208 209 9.588432 TGGAATAGAATATAATGAGGGGGTTAT 57.412 33.333 0.00 0.00 0.00 1.89
209 210 8.832735 GTGGAATAGAATATAATGAGGGGGTTA 58.167 37.037 0.00 0.00 0.00 2.85
210 211 7.257419 GGTGGAATAGAATATAATGAGGGGGTT 60.257 40.741 0.00 0.00 0.00 4.11
211 212 6.217693 GGTGGAATAGAATATAATGAGGGGGT 59.782 42.308 0.00 0.00 0.00 4.95
212 213 6.353951 GGGTGGAATAGAATATAATGAGGGGG 60.354 46.154 0.00 0.00 0.00 5.40
213 214 6.217487 TGGGTGGAATAGAATATAATGAGGGG 59.783 42.308 0.00 0.00 0.00 4.79
214 215 7.270832 TGGGTGGAATAGAATATAATGAGGG 57.729 40.000 0.00 0.00 0.00 4.30
218 219 9.113838 GCACTATGGGTGGAATAGAATATAATG 57.886 37.037 0.00 0.00 45.44 1.90
219 220 9.062367 AGCACTATGGGTGGAATAGAATATAAT 57.938 33.333 0.00 0.00 45.44 1.28
220 221 8.449423 AGCACTATGGGTGGAATAGAATATAA 57.551 34.615 0.00 0.00 45.44 0.98
221 222 9.729550 ATAGCACTATGGGTGGAATAGAATATA 57.270 33.333 0.00 0.00 45.44 0.86
222 223 6.959606 AGCACTATGGGTGGAATAGAATAT 57.040 37.500 0.00 0.00 45.44 1.28
223 224 7.457852 ACATAGCACTATGGGTGGAATAGAATA 59.542 37.037 19.16 0.00 45.36 1.75
224 225 6.273260 ACATAGCACTATGGGTGGAATAGAAT 59.727 38.462 19.16 0.00 45.36 2.40
225 226 5.606749 ACATAGCACTATGGGTGGAATAGAA 59.393 40.000 19.16 0.00 45.36 2.10
226 227 5.155161 ACATAGCACTATGGGTGGAATAGA 58.845 41.667 19.16 0.00 45.36 1.98
227 228 5.482908 GACATAGCACTATGGGTGGAATAG 58.517 45.833 19.16 0.00 45.36 1.73
228 229 4.286032 GGACATAGCACTATGGGTGGAATA 59.714 45.833 19.16 0.00 45.36 1.75
229 230 3.073062 GGACATAGCACTATGGGTGGAAT 59.927 47.826 19.16 0.00 45.36 3.01
230 231 2.438021 GGACATAGCACTATGGGTGGAA 59.562 50.000 19.16 0.00 45.36 3.53
231 232 2.047061 GGACATAGCACTATGGGTGGA 58.953 52.381 19.16 0.00 45.36 4.02
232 233 1.768275 TGGACATAGCACTATGGGTGG 59.232 52.381 19.16 0.00 45.36 4.61
233 234 3.071457 TCATGGACATAGCACTATGGGTG 59.929 47.826 19.16 12.40 45.36 4.61
234 235 3.071602 GTCATGGACATAGCACTATGGGT 59.928 47.826 19.16 2.20 45.36 4.51
235 236 3.326006 AGTCATGGACATAGCACTATGGG 59.674 47.826 19.16 6.10 45.36 4.00
236 237 4.564041 GAGTCATGGACATAGCACTATGG 58.436 47.826 19.16 4.18 45.36 2.74
237 238 4.233005 CGAGTCATGGACATAGCACTATG 58.767 47.826 14.66 14.66 46.24 2.23
238 239 3.305676 GCGAGTCATGGACATAGCACTAT 60.306 47.826 0.00 0.00 34.60 2.12
239 240 2.034685 GCGAGTCATGGACATAGCACTA 59.965 50.000 0.00 0.00 34.60 2.74
240 241 1.202463 GCGAGTCATGGACATAGCACT 60.202 52.381 0.00 0.00 34.60 4.40
241 242 1.212616 GCGAGTCATGGACATAGCAC 58.787 55.000 0.00 0.00 34.60 4.40
242 243 0.249031 CGCGAGTCATGGACATAGCA 60.249 55.000 0.00 0.00 34.60 3.49
243 244 1.552348 GCGCGAGTCATGGACATAGC 61.552 60.000 12.10 0.79 34.60 2.97
244 245 0.031314 AGCGCGAGTCATGGACATAG 59.969 55.000 12.10 0.00 34.60 2.23
245 246 0.030773 GAGCGCGAGTCATGGACATA 59.969 55.000 12.10 0.00 34.60 2.29
246 247 1.227089 GAGCGCGAGTCATGGACAT 60.227 57.895 12.10 0.00 34.60 3.06
247 248 1.948721 ATGAGCGCGAGTCATGGACA 61.949 55.000 19.93 3.15 33.24 4.02
248 249 0.030773 TATGAGCGCGAGTCATGGAC 59.969 55.000 26.02 1.03 35.39 4.02
249 250 0.961753 ATATGAGCGCGAGTCATGGA 59.038 50.000 26.02 13.32 35.39 3.41
250 251 2.636768 TATATGAGCGCGAGTCATGG 57.363 50.000 26.02 0.00 35.39 3.66
251 252 3.241900 GCAATATATGAGCGCGAGTCATG 60.242 47.826 26.02 15.87 35.39 3.07
252 253 2.926200 GCAATATATGAGCGCGAGTCAT 59.074 45.455 22.89 22.89 38.26 3.06
253 254 2.328473 GCAATATATGAGCGCGAGTCA 58.672 47.619 12.10 12.79 0.00 3.41
262 263 6.451700 GCGTATCATATCGCGCAATATATGAG 60.452 42.308 27.15 19.88 44.25 2.90
263 264 6.911484 CGTATCATATCGCGCAATATATGA 57.089 37.500 26.31 26.31 44.80 2.15
275 276 4.976116 TGTGTGAAAGAGCGTATCATATCG 59.024 41.667 0.00 0.00 0.00 2.92
276 277 8.520835 TTATGTGTGAAAGAGCGTATCATATC 57.479 34.615 0.00 0.00 0.00 1.63
277 278 8.765219 GTTTATGTGTGAAAGAGCGTATCATAT 58.235 33.333 0.00 0.00 0.00 1.78
278 279 7.223971 GGTTTATGTGTGAAAGAGCGTATCATA 59.776 37.037 0.00 0.00 0.00 2.15
279 280 6.037172 GGTTTATGTGTGAAAGAGCGTATCAT 59.963 38.462 0.00 0.00 0.00 2.45
280 281 5.350365 GGTTTATGTGTGAAAGAGCGTATCA 59.650 40.000 0.00 0.00 0.00 2.15
281 282 5.581085 AGGTTTATGTGTGAAAGAGCGTATC 59.419 40.000 0.00 0.00 0.00 2.24
282 283 5.488341 AGGTTTATGTGTGAAAGAGCGTAT 58.512 37.500 0.00 0.00 0.00 3.06
283 284 4.890088 AGGTTTATGTGTGAAAGAGCGTA 58.110 39.130 0.00 0.00 0.00 4.42
284 285 3.740115 AGGTTTATGTGTGAAAGAGCGT 58.260 40.909 0.00 0.00 0.00 5.07
285 286 3.125316 GGAGGTTTATGTGTGAAAGAGCG 59.875 47.826 0.00 0.00 0.00 5.03
286 287 4.072131 TGGAGGTTTATGTGTGAAAGAGC 58.928 43.478 0.00 0.00 0.00 4.09
287 288 5.308825 AGTGGAGGTTTATGTGTGAAAGAG 58.691 41.667 0.00 0.00 0.00 2.85
288 289 5.304686 AGTGGAGGTTTATGTGTGAAAGA 57.695 39.130 0.00 0.00 0.00 2.52
289 290 5.995282 TGTAGTGGAGGTTTATGTGTGAAAG 59.005 40.000 0.00 0.00 0.00 2.62
290 291 5.931294 TGTAGTGGAGGTTTATGTGTGAAA 58.069 37.500 0.00 0.00 0.00 2.69
291 292 5.554437 TGTAGTGGAGGTTTATGTGTGAA 57.446 39.130 0.00 0.00 0.00 3.18
292 293 5.305902 TCTTGTAGTGGAGGTTTATGTGTGA 59.694 40.000 0.00 0.00 0.00 3.58
293 294 5.547465 TCTTGTAGTGGAGGTTTATGTGTG 58.453 41.667 0.00 0.00 0.00 3.82
294 295 5.818678 TCTTGTAGTGGAGGTTTATGTGT 57.181 39.130 0.00 0.00 0.00 3.72
295 296 7.687941 ATTTCTTGTAGTGGAGGTTTATGTG 57.312 36.000 0.00 0.00 0.00 3.21
296 297 9.396022 CATATTTCTTGTAGTGGAGGTTTATGT 57.604 33.333 0.00 0.00 0.00 2.29
297 298 8.840321 CCATATTTCTTGTAGTGGAGGTTTATG 58.160 37.037 0.00 0.00 0.00 1.90
298 299 7.502561 GCCATATTTCTTGTAGTGGAGGTTTAT 59.497 37.037 0.00 0.00 0.00 1.40
299 300 6.826741 GCCATATTTCTTGTAGTGGAGGTTTA 59.173 38.462 0.00 0.00 0.00 2.01
300 301 5.652452 GCCATATTTCTTGTAGTGGAGGTTT 59.348 40.000 0.00 0.00 0.00 3.27
301 302 5.193679 GCCATATTTCTTGTAGTGGAGGTT 58.806 41.667 0.00 0.00 0.00 3.50
302 303 4.385310 GGCCATATTTCTTGTAGTGGAGGT 60.385 45.833 0.00 0.00 0.00 3.85
336 337 5.306419 TGACAAATCAATGACCAAAATGGGA 59.694 36.000 0.87 0.00 43.37 4.37
538 540 2.125512 GCTCGGCCACGTCAGATT 60.126 61.111 2.24 0.00 41.85 2.40
623 626 0.636101 TGGGCTGAATTATTGGGCCT 59.364 50.000 4.53 0.00 43.52 5.19
944 988 7.091993 TGGGTCTAACTTAATGAAATCCTGGAT 60.092 37.037 2.57 2.57 0.00 3.41
966 1010 5.027460 TGTGGTGTAATGATACTACTGGGT 58.973 41.667 0.00 0.00 32.98 4.51
991 1035 2.951642 CGGTTGGTGCCATCTTATGAAT 59.048 45.455 0.00 0.00 0.00 2.57
1012 1157 2.099098 CCCTCACTGGTTGTGTTGTTTC 59.901 50.000 0.00 0.00 46.27 2.78
1078 1223 3.360249 AAAGAGTGATGTTGCTGTTGC 57.640 42.857 0.00 0.00 40.20 4.17
1239 1384 7.106239 AGGACATCGATTCTTGAATAGTTTGT 58.894 34.615 0.00 11.17 0.00 2.83
1584 1734 4.811557 GCAGCGTTCATCCTTTACTCTATT 59.188 41.667 0.00 0.00 0.00 1.73
1585 1735 4.100189 AGCAGCGTTCATCCTTTACTCTAT 59.900 41.667 0.00 0.00 0.00 1.98
1995 2256 8.450964 ACATAGTCCTGAATTTAACAACAATCG 58.549 33.333 0.00 0.00 0.00 3.34
1997 2258 9.077885 ACACATAGTCCTGAATTTAACAACAAT 57.922 29.630 0.00 0.00 0.00 2.71
2344 2605 6.873656 TCAGTCTTTTCGAAATTGTAAGACG 58.126 36.000 23.73 19.87 45.71 4.18
2781 3133 5.560724 AGCTTGATTTGTTCTACTTGCCTA 58.439 37.500 0.00 0.00 0.00 3.93
2942 3300 1.322442 GCACTTCTTGGTCAAAGCCT 58.678 50.000 0.00 0.00 35.69 4.58
2943 3301 1.032014 TGCACTTCTTGGTCAAAGCC 58.968 50.000 0.00 0.00 35.69 4.35
2944 3302 2.869233 TTGCACTTCTTGGTCAAAGC 57.131 45.000 0.00 0.00 35.69 3.51
2945 3303 4.935702 TGATTTGCACTTCTTGGTCAAAG 58.064 39.130 0.00 0.00 37.22 2.77
2946 3304 4.644234 TCTGATTTGCACTTCTTGGTCAAA 59.356 37.500 0.00 0.00 0.00 2.69
2947 3305 4.206375 TCTGATTTGCACTTCTTGGTCAA 58.794 39.130 0.00 0.00 0.00 3.18
3430 4557 5.182487 TCGCAAGTTAAGATGGATTTAGCA 58.818 37.500 0.00 0.00 39.48 3.49
3435 4562 5.245531 TGTTCTCGCAAGTTAAGATGGATT 58.754 37.500 0.00 0.00 39.48 3.01
3543 4670 3.114616 CTGTTCGCTGTCGGGCTG 61.115 66.667 0.00 0.00 36.13 4.85
3581 4708 1.587933 GACAGAGCTCCGTCTCCGTT 61.588 60.000 20.64 0.00 33.66 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.