Multiple sequence alignment - TraesCS1A01G052300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G052300 chr1A 100.000 4885 0 0 1 4885 34410947 34406063 0.000000e+00 9022.0
1 TraesCS1A01G052300 chr1A 100.000 444 0 0 5140 5583 34405808 34405365 0.000000e+00 821.0
2 TraesCS1A01G052300 chr1A 87.912 91 10 1 15 105 315398514 315398603 7.650000e-19 106.0
3 TraesCS1A01G052300 chr1A 100.000 28 0 0 2945 2972 60740672 60740699 1.000000e-02 52.8
4 TraesCS1A01G052300 chr1B 94.089 1844 54 24 2779 4587 54134265 54132442 0.000000e+00 2750.0
5 TraesCS1A01G052300 chr1B 83.435 1974 130 77 893 2786 54136463 54134607 0.000000e+00 1652.0
6 TraesCS1A01G052300 chr1B 86.421 1193 110 24 3415 4583 54117250 54116086 0.000000e+00 1258.0
7 TraesCS1A01G052300 chr1B 91.648 898 32 24 2803 3666 54952270 54951382 0.000000e+00 1203.0
8 TraesCS1A01G052300 chr1B 91.425 898 33 25 2803 3666 54993233 54992346 0.000000e+00 1192.0
9 TraesCS1A01G052300 chr1B 88.506 957 47 23 893 1808 55004457 55003523 0.000000e+00 1099.0
10 TraesCS1A01G052300 chr1B 87.566 949 59 24 893 1808 54961171 54960249 0.000000e+00 1044.0
11 TraesCS1A01G052300 chr1B 87.454 542 47 9 2317 2856 54952790 54952268 6.190000e-169 604.0
12 TraesCS1A01G052300 chr1B 87.454 542 47 9 2317 2856 54993753 54993231 6.190000e-169 604.0
13 TraesCS1A01G052300 chr1B 93.566 373 12 5 3272 3633 53929096 53928725 3.800000e-151 545.0
14 TraesCS1A01G052300 chr1B 92.251 271 20 1 5142 5412 53929362 53929093 3.160000e-102 383.0
15 TraesCS1A01G052300 chr1B 82.456 456 45 19 4147 4587 54924391 54923956 3.180000e-97 366.0
16 TraesCS1A01G052300 chr1B 82.456 456 45 19 4147 4587 54941307 54940872 3.180000e-97 366.0
17 TraesCS1A01G052300 chr1B 93.056 216 11 2 4630 4844 53929584 53929372 4.200000e-81 313.0
18 TraesCS1A01G052300 chr1B 85.093 322 18 8 2003 2305 54960056 54959746 9.090000e-78 302.0
19 TraesCS1A01G052300 chr1B 84.472 322 20 8 2003 2305 55003328 55003018 1.970000e-74 291.0
20 TraesCS1A01G052300 chr1D 93.187 1453 49 14 3175 4587 35650870 35649428 0.000000e+00 2089.0
21 TraesCS1A01G052300 chr1D 87.148 1455 125 29 3179 4587 35640847 35639409 0.000000e+00 1594.0
22 TraesCS1A01G052300 chr1D 87.572 1392 75 44 1839 3178 35653092 35651747 0.000000e+00 1522.0
23 TraesCS1A01G052300 chr1D 89.003 973 33 24 366 1279 35655068 35654111 0.000000e+00 1136.0
24 TraesCS1A01G052300 chr1D 92.089 316 24 1 5142 5457 35635244 35634930 1.430000e-120 444.0
25 TraesCS1A01G052300 chr1D 83.964 449 23 11 1355 1774 35653563 35653135 8.770000e-103 385.0
26 TraesCS1A01G052300 chr1D 86.127 346 33 10 997 1331 35645657 35645316 5.320000e-95 359.0
27 TraesCS1A01G052300 chr1D 89.825 285 18 6 1 285 35658200 35657927 6.880000e-94 355.0
28 TraesCS1A01G052300 chr1D 89.416 274 20 6 4584 4853 35635509 35635241 2.490000e-88 337.0
29 TraesCS1A01G052300 chr1D 86.364 154 21 0 1159 1312 102533616 102533463 9.620000e-38 169.0
30 TraesCS1A01G052300 chr1D 98.701 77 1 0 5507 5583 35634921 35634845 2.710000e-28 137.0
31 TraesCS1A01G052300 chr1D 89.011 91 9 1 15 105 232435977 232435888 1.640000e-20 111.0
32 TraesCS1A01G052300 chr7B 86.056 251 30 4 1 251 92309210 92309455 1.190000e-66 265.0
33 TraesCS1A01G052300 chr2D 82.154 325 42 10 1 319 353541905 353541591 1.190000e-66 265.0
34 TraesCS1A01G052300 chr2D 77.826 230 30 15 13 227 508848553 508848330 7.600000e-24 122.0
35 TraesCS1A01G052300 chr6A 85.311 177 19 5 1157 1329 26815965 26815792 5.750000e-40 176.0
36 TraesCS1A01G052300 chr6B 87.097 155 18 2 1159 1312 46531659 46531506 2.070000e-39 174.0
37 TraesCS1A01G052300 chr6B 91.111 45 3 1 2935 2979 72388597 72388554 6.040000e-05 60.2
38 TraesCS1A01G052300 chr2B 79.556 225 30 15 16 230 505936756 505936974 4.510000e-31 147.0
39 TraesCS1A01G052300 chr2A 78.788 231 32 13 13 229 11794367 11794594 7.540000e-29 139.0
40 TraesCS1A01G052300 chr5A 82.500 120 21 0 1 120 47543132 47543251 7.650000e-19 106.0
41 TraesCS1A01G052300 chr5A 100.000 28 0 0 4858 4885 532863948 532863975 1.000000e-02 52.8
42 TraesCS1A01G052300 chr5A 100.000 28 0 0 4858 4885 536144448 536144475 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G052300 chr1A 34405365 34410947 5582 True 4921.500000 9022 100.000000 1 5583 2 chr1A.!!$R1 5582
1 TraesCS1A01G052300 chr1B 54132442 54136463 4021 True 2201.000000 2750 88.762000 893 4587 2 chr1B.!!$R5 3694
2 TraesCS1A01G052300 chr1B 54116086 54117250 1164 True 1258.000000 1258 86.421000 3415 4583 1 chr1B.!!$R1 1168
3 TraesCS1A01G052300 chr1B 54951382 54952790 1408 True 903.500000 1203 89.551000 2317 3666 2 chr1B.!!$R6 1349
4 TraesCS1A01G052300 chr1B 54992346 54993753 1407 True 898.000000 1192 89.439500 2317 3666 2 chr1B.!!$R8 1349
5 TraesCS1A01G052300 chr1B 55003018 55004457 1439 True 695.000000 1099 86.489000 893 2305 2 chr1B.!!$R9 1412
6 TraesCS1A01G052300 chr1B 54959746 54961171 1425 True 673.000000 1044 86.329500 893 2305 2 chr1B.!!$R7 1412
7 TraesCS1A01G052300 chr1B 53928725 53929584 859 True 413.666667 545 92.957667 3272 5412 3 chr1B.!!$R4 2140
8 TraesCS1A01G052300 chr1D 35645316 35658200 12884 True 974.333333 2089 88.279667 1 4587 6 chr1D.!!$R4 4586
9 TraesCS1A01G052300 chr1D 35634845 35640847 6002 True 628.000000 1594 91.838500 3179 5583 4 chr1D.!!$R3 2404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 3287 0.036952 CACATTGTCGGCAGGAGACT 60.037 55.0 0.0 0.0 46.44 3.24 F
1529 4901 0.384309 TGACACTGACACTGACGGAC 59.616 55.0 0.0 0.0 0.00 4.79 F
2503 5989 0.250597 GGGGTTGCGGTAGTGTCTTT 60.251 55.0 0.0 0.0 0.00 2.52 F
3787 8610 0.176680 ATCGATGCAGAAGCGTTCCT 59.823 50.0 0.0 0.0 46.23 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 5242 0.102300 ACGCAGCGCATGATACAGTA 59.898 50.0 16.61 0.0 0.00 2.74 R
2710 6205 0.040058 AGATCCATGCCAAGCAACCA 59.960 50.0 0.00 0.0 43.62 3.67 R
4015 8866 0.178944 TCCAGAAGTTCCGACTCCCA 60.179 55.0 0.00 0.0 34.21 4.37 R
5466 17148 0.040942 TTGGGAATGTGGGTGGATGG 59.959 55.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 3.124921 CGGCCCACCATTGTCGTC 61.125 66.667 0.00 0.00 34.57 4.20
125 126 2.721167 CGGCGGAGAGGTGAATGGA 61.721 63.158 0.00 0.00 0.00 3.41
142 143 1.359459 GGACGGCTAAGGTTTGCTCG 61.359 60.000 0.00 1.95 0.00 5.03
145 146 0.949105 CGGCTAAGGTTTGCTCGTGT 60.949 55.000 0.00 0.00 0.00 4.49
151 152 3.047877 GTTTGCTCGTGTCGGGGG 61.048 66.667 0.00 0.00 0.00 5.40
166 167 3.462678 GGGTCGAGGAGGCAGGAC 61.463 72.222 0.00 0.00 0.00 3.85
169 170 4.361971 TCGAGGAGGCAGGACGGT 62.362 66.667 0.00 0.00 0.00 4.83
182 183 0.037232 GGACGGTCAGGAAGTGGAAG 60.037 60.000 10.76 0.00 0.00 3.46
192 193 2.912956 AGGAAGTGGAAGCTGTGGATTA 59.087 45.455 0.00 0.00 0.00 1.75
228 229 3.841643 TCCAATTAAGAAGGACGACGAC 58.158 45.455 0.00 0.00 0.00 4.34
230 231 3.858238 CCAATTAAGAAGGACGACGACTC 59.142 47.826 0.00 0.00 0.00 3.36
234 235 1.020333 AGAAGGACGACGACTCTCCG 61.020 60.000 0.00 0.00 0.00 4.63
249 250 0.392863 CTCCGCCCATGTGATTGACA 60.393 55.000 0.00 0.00 39.53 3.58
251 252 1.105457 CCGCCCATGTGATTGACAAT 58.895 50.000 0.00 0.00 38.36 2.71
252 253 1.066002 CCGCCCATGTGATTGACAATC 59.934 52.381 19.39 19.39 38.36 2.67
253 254 1.744522 CGCCCATGTGATTGACAATCA 59.255 47.619 23.89 23.89 45.19 2.57
262 263 4.001618 TGATTGACAATCAGTGAACCGA 57.998 40.909 23.89 1.37 42.69 4.69
294 1970 2.230750 TCATGCGCATTGAATTTGGACA 59.769 40.909 22.81 0.00 0.00 4.02
295 1971 2.350899 TGCGCATTGAATTTGGACAG 57.649 45.000 5.66 0.00 0.00 3.51
298 1974 2.607771 GCGCATTGAATTTGGACAGTGT 60.608 45.455 0.30 0.00 0.00 3.55
301 1977 4.672542 CGCATTGAATTTGGACAGTGTAGG 60.673 45.833 0.00 0.00 0.00 3.18
316 1992 3.286694 TAGGTAGGTGGACGGCCGT 62.287 63.158 34.89 34.89 36.79 5.68
317 1993 4.139234 GGTAGGTGGACGGCCGTC 62.139 72.222 43.30 43.30 43.87 4.79
335 2011 0.101579 TCACTGTCACGCGTTCTCAA 59.898 50.000 10.22 0.00 0.00 3.02
341 2017 0.384309 TCACGCGTTCTCAAGACAGT 59.616 50.000 10.22 0.00 0.00 3.55
342 2018 1.202371 TCACGCGTTCTCAAGACAGTT 60.202 47.619 10.22 0.00 0.00 3.16
343 2019 1.071239 CACGCGTTCTCAAGACAGTTG 60.071 52.381 10.22 0.00 0.00 3.16
362 2038 2.046507 CGAGCAAGCTGGCCTTCT 60.047 61.111 10.23 0.00 0.00 2.85
364 2040 1.881602 GAGCAAGCTGGCCTTCTTG 59.118 57.895 24.18 24.18 41.79 3.02
418 3203 1.008995 CCAACCAAACGGAGCAACG 60.009 57.895 0.00 0.00 40.31 4.10
429 3214 1.166531 GGAGCAACGCACCTTTGACT 61.167 55.000 0.00 0.00 36.40 3.41
449 3234 4.392940 ACTGGTCAAAATGAGGTCTCAAG 58.607 43.478 4.67 0.00 43.58 3.02
497 3283 2.350895 CCCACATTGTCGGCAGGA 59.649 61.111 0.00 0.00 0.00 3.86
498 3284 1.746615 CCCACATTGTCGGCAGGAG 60.747 63.158 0.00 0.00 0.00 3.69
499 3285 1.296392 CCACATTGTCGGCAGGAGA 59.704 57.895 0.00 0.00 0.00 3.71
500 3286 1.021390 CCACATTGTCGGCAGGAGAC 61.021 60.000 0.00 0.00 38.98 3.36
501 3287 0.036952 CACATTGTCGGCAGGAGACT 60.037 55.000 0.00 0.00 46.44 3.24
516 3322 4.400961 ACTGAGCGGCTGGCCTTC 62.401 66.667 7.50 7.83 45.17 3.46
517 3323 4.093291 CTGAGCGGCTGGCCTTCT 62.093 66.667 7.50 6.52 45.17 2.85
518 3324 4.087892 TGAGCGGCTGGCCTTCTC 62.088 66.667 7.50 17.53 45.17 2.87
523 3329 4.847444 GGCTGGCCTTCTCGCTCC 62.847 72.222 3.32 0.00 0.00 4.70
632 3438 1.802880 CGCCTACTCATCAAACCGAGG 60.803 57.143 0.00 0.00 33.36 4.63
664 3470 2.175811 GCGTGGCATCGGAAACAC 59.824 61.111 10.56 0.00 0.00 3.32
695 3501 1.228184 GATGGGAGCTGGATGGCTG 60.228 63.158 0.00 0.00 43.20 4.85
738 3544 4.864334 CCATGGAGGCCGAGCACC 62.864 72.222 5.56 0.00 0.00 5.01
747 3553 4.592192 CCGAGCACCGCCATCGAT 62.592 66.667 0.00 0.00 38.72 3.59
748 3554 3.333189 CGAGCACCGCCATCGATG 61.333 66.667 18.76 18.76 38.72 3.84
801 3607 3.618750 GGAACCACCCGACCACGA 61.619 66.667 0.00 0.00 42.66 4.35
802 3608 2.356673 GAACCACCCGACCACGAC 60.357 66.667 0.00 0.00 42.66 4.34
803 3609 3.154584 GAACCACCCGACCACGACA 62.155 63.158 0.00 0.00 42.66 4.35
904 3728 4.918360 AGTCCCAGCCCCACCACA 62.918 66.667 0.00 0.00 0.00 4.17
940 3768 1.293924 CATGACCTCACAGAATCCGC 58.706 55.000 0.00 0.00 0.00 5.54
995 3826 3.626924 GGGACACGACAGGGCACT 61.627 66.667 0.00 0.00 0.00 4.40
1006 3842 0.745845 CAGGGCACTCCACATGCTAC 60.746 60.000 0.00 0.00 42.93 3.58
1047 3889 3.120385 TCAATGTCGGCAGCAGCG 61.120 61.111 0.00 0.00 43.41 5.18
1312 4187 1.474478 TCATCGACTTCCTCTGTGAGC 59.526 52.381 0.00 0.00 0.00 4.26
1313 4188 0.453793 ATCGACTTCCTCTGTGAGCG 59.546 55.000 0.00 0.00 0.00 5.03
1346 4221 2.359975 CCCGACCCAAACCAGAGC 60.360 66.667 0.00 0.00 0.00 4.09
1397 4744 2.202623 CGCTTCTCTCCCCGAACG 60.203 66.667 0.00 0.00 0.00 3.95
1529 4901 0.384309 TGACACTGACACTGACGGAC 59.616 55.000 0.00 0.00 0.00 4.79
1586 4958 2.746362 CCAGAGCTTGAGTGAAATGTCC 59.254 50.000 0.00 0.00 0.00 4.02
1591 4963 5.717178 AGAGCTTGAGTGAAATGTCCTACTA 59.283 40.000 0.00 0.00 0.00 1.82
1592 4964 5.971763 AGCTTGAGTGAAATGTCCTACTAG 58.028 41.667 0.00 0.00 0.00 2.57
1593 4965 5.482175 AGCTTGAGTGAAATGTCCTACTAGT 59.518 40.000 0.00 0.00 0.00 2.57
1595 4967 6.752815 GCTTGAGTGAAATGTCCTACTAGTAC 59.247 42.308 0.00 0.00 0.00 2.73
1669 5046 5.107259 TGGTCGTATTTTCAGTGAAATGTCG 60.107 40.000 18.69 19.77 31.34 4.35
1673 5050 5.499955 CGTATTTTCAGTGAAATGTCGTTCG 59.500 40.000 18.69 12.26 31.34 3.95
1678 5055 4.116961 TCAGTGAAATGTCGTTCGTTCTT 58.883 39.130 0.00 0.00 0.00 2.52
1762 5157 4.884458 GGCTCAGCCTGAAATAACTTAC 57.116 45.455 9.09 0.00 46.69 2.34
1776 5171 1.553706 ACTTACCCACCGGAGTACTG 58.446 55.000 9.46 0.00 0.00 2.74
1816 5226 5.607119 ACAGTTTTGTTGTCCATCGTATC 57.393 39.130 0.00 0.00 32.28 2.24
1817 5227 5.060506 ACAGTTTTGTTGTCCATCGTATCA 58.939 37.500 0.00 0.00 32.28 2.15
1818 5228 5.705441 ACAGTTTTGTTGTCCATCGTATCAT 59.295 36.000 0.00 0.00 32.28 2.45
1819 5229 6.876789 ACAGTTTTGTTGTCCATCGTATCATA 59.123 34.615 0.00 0.00 32.28 2.15
1820 5230 7.552687 ACAGTTTTGTTGTCCATCGTATCATAT 59.447 33.333 0.00 0.00 32.28 1.78
1821 5231 8.397906 CAGTTTTGTTGTCCATCGTATCATATT 58.602 33.333 0.00 0.00 0.00 1.28
1822 5232 8.612619 AGTTTTGTTGTCCATCGTATCATATTC 58.387 33.333 0.00 0.00 0.00 1.75
1823 5233 8.394877 GTTTTGTTGTCCATCGTATCATATTCA 58.605 33.333 0.00 0.00 0.00 2.57
1824 5234 8.675705 TTTGTTGTCCATCGTATCATATTCAT 57.324 30.769 0.00 0.00 0.00 2.57
1825 5235 9.771534 TTTGTTGTCCATCGTATCATATTCATA 57.228 29.630 0.00 0.00 0.00 2.15
1826 5236 8.757164 TGTTGTCCATCGTATCATATTCATAC 57.243 34.615 0.00 0.00 0.00 2.39
1827 5237 8.364142 TGTTGTCCATCGTATCATATTCATACA 58.636 33.333 3.53 0.00 0.00 2.29
1828 5238 8.864024 GTTGTCCATCGTATCATATTCATACAG 58.136 37.037 3.53 0.00 0.00 2.74
1829 5239 7.547227 TGTCCATCGTATCATATTCATACAGG 58.453 38.462 3.53 0.00 0.00 4.00
1830 5240 6.477033 GTCCATCGTATCATATTCATACAGGC 59.523 42.308 3.53 0.00 0.00 4.85
1831 5241 6.154363 TCCATCGTATCATATTCATACAGGCA 59.846 38.462 0.00 0.00 0.00 4.75
1832 5242 6.988580 CCATCGTATCATATTCATACAGGCAT 59.011 38.462 0.00 0.00 0.00 4.40
1833 5243 8.143835 CCATCGTATCATATTCATACAGGCATA 58.856 37.037 0.00 0.00 0.00 3.14
1834 5244 8.972349 CATCGTATCATATTCATACAGGCATAC 58.028 37.037 0.00 0.00 0.00 2.39
1850 5260 1.125566 CATACTGTATCATGCGCTGCG 59.874 52.381 19.17 19.17 0.00 5.18
1869 5279 1.895866 CGTTAGTTGGTCCCTCCCTCT 60.896 57.143 0.00 0.00 34.77 3.69
1870 5280 1.832366 GTTAGTTGGTCCCTCCCTCTC 59.168 57.143 0.00 0.00 34.77 3.20
1871 5281 0.338814 TAGTTGGTCCCTCCCTCTCC 59.661 60.000 0.00 0.00 34.77 3.71
1872 5282 1.081277 GTTGGTCCCTCCCTCTCCT 59.919 63.158 0.00 0.00 34.77 3.69
1873 5283 0.978667 GTTGGTCCCTCCCTCTCCTC 60.979 65.000 0.00 0.00 34.77 3.71
1874 5284 2.182858 TTGGTCCCTCCCTCTCCTCC 62.183 65.000 0.00 0.00 34.77 4.30
1875 5285 2.329399 GGTCCCTCCCTCTCCTCCT 61.329 68.421 0.00 0.00 0.00 3.69
1876 5286 1.231928 GTCCCTCCCTCTCCTCCTC 59.768 68.421 0.00 0.00 0.00 3.71
1877 5287 2.197324 CCCTCCCTCTCCTCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
1878 5288 2.387772 CCCTCCCTCTCCTCCTCGA 61.388 68.421 0.00 0.00 0.00 4.04
1879 5289 1.150536 CCTCCCTCTCCTCCTCGAG 59.849 68.421 5.13 5.13 0.00 4.04
1880 5290 1.349542 CCTCCCTCTCCTCCTCGAGA 61.350 65.000 15.71 0.00 37.35 4.04
1885 5295 2.373836 CCCTCTCCTCCTCGAGAATCTA 59.626 54.545 15.71 0.00 38.41 1.98
1895 5305 6.867816 CCTCCTCGAGAATCTATTCATTCAAG 59.132 42.308 15.71 0.00 39.23 3.02
1898 5315 5.917462 TCGAGAATCTATTCATTCAAGCCA 58.083 37.500 5.55 0.00 39.23 4.75
1908 5325 3.149196 TCATTCAAGCCACTGTCCTTTC 58.851 45.455 0.00 0.00 0.00 2.62
1957 5374 1.130054 TCAAGGCCCAGCTGTTCTCT 61.130 55.000 13.81 1.66 0.00 3.10
1961 5378 0.676151 GGCCCAGCTGTTCTCTTCAG 60.676 60.000 13.81 0.00 36.18 3.02
1977 5402 1.699730 TCAGTCTTTGACACGGGAGA 58.300 50.000 0.00 0.00 34.60 3.71
1979 5404 1.705873 AGTCTTTGACACGGGAGACT 58.294 50.000 1.08 1.08 42.86 3.24
2158 5635 8.158169 TGATGGAGATAATGTTATTGTTCAGC 57.842 34.615 0.00 0.00 0.00 4.26
2170 5647 6.934083 TGTTATTGTTCAGCACTTCAGATACA 59.066 34.615 0.00 0.00 0.00 2.29
2171 5648 7.118245 TGTTATTGTTCAGCACTTCAGATACAG 59.882 37.037 0.00 0.00 0.00 2.74
2172 5649 4.607293 TGTTCAGCACTTCAGATACAGT 57.393 40.909 0.00 0.00 0.00 3.55
2174 5651 6.286240 TGTTCAGCACTTCAGATACAGTAT 57.714 37.500 0.00 0.00 0.00 2.12
2175 5652 6.101997 TGTTCAGCACTTCAGATACAGTATG 58.898 40.000 0.00 0.00 46.00 2.39
2234 5716 5.982356 TCTGTCCTGTTATCTGAAATCCAG 58.018 41.667 0.00 0.00 44.27 3.86
2245 5727 1.078143 AAATCCAGCGGCTGAGGAC 60.078 57.895 30.52 0.00 33.57 3.85
2266 5748 2.092323 GTGAATCTGTTACCAAGGGCC 58.908 52.381 0.00 0.00 0.00 5.80
2311 5793 2.545742 GGGAACTTTGCACATGTCCAAC 60.546 50.000 0.47 0.00 0.00 3.77
2312 5794 2.362077 GGAACTTTGCACATGTCCAACT 59.638 45.455 0.47 0.00 0.00 3.16
2313 5795 3.568007 GGAACTTTGCACATGTCCAACTA 59.432 43.478 0.47 0.00 0.00 2.24
2314 5796 4.537015 GAACTTTGCACATGTCCAACTAC 58.463 43.478 0.47 0.00 0.00 2.73
2315 5797 3.820557 ACTTTGCACATGTCCAACTACT 58.179 40.909 0.47 0.00 0.00 2.57
2329 5811 4.020543 CCAACTACTCTAGTCCTGAAGCT 58.979 47.826 0.00 0.00 38.26 3.74
2359 5841 9.342308 TGATCTTCTACCATTATTTTTGGCTAG 57.658 33.333 0.00 0.00 37.81 3.42
2422 5908 7.362401 GGACTATACGACTAAGTTGAGGAACAA 60.362 40.741 0.00 0.00 34.17 2.83
2499 5985 2.918802 TCGGGGTTGCGGTAGTGT 60.919 61.111 0.00 0.00 0.00 3.55
2500 5986 2.433664 CGGGGTTGCGGTAGTGTC 60.434 66.667 0.00 0.00 0.00 3.67
2502 5988 1.373812 GGGGTTGCGGTAGTGTCTT 59.626 57.895 0.00 0.00 0.00 3.01
2503 5989 0.250597 GGGGTTGCGGTAGTGTCTTT 60.251 55.000 0.00 0.00 0.00 2.52
2505 5991 1.589803 GGTTGCGGTAGTGTCTTTGT 58.410 50.000 0.00 0.00 0.00 2.83
2507 5993 2.032290 GGTTGCGGTAGTGTCTTTGTTC 60.032 50.000 0.00 0.00 0.00 3.18
2508 5994 2.870411 GTTGCGGTAGTGTCTTTGTTCT 59.130 45.455 0.00 0.00 0.00 3.01
2509 5995 2.479837 TGCGGTAGTGTCTTTGTTCTG 58.520 47.619 0.00 0.00 0.00 3.02
2580 6068 2.817396 GAGCTGCGGTGGAAGAGC 60.817 66.667 0.00 0.00 0.00 4.09
2608 6099 1.804601 TGATGATGATGATGAGCGGC 58.195 50.000 0.00 0.00 0.00 6.53
2681 6176 1.202087 CGTAGCTTGACCTCAGAGTCG 60.202 57.143 0.00 0.00 39.77 4.18
2704 6199 4.012895 GCGCTGTCACCAACACGG 62.013 66.667 0.00 0.00 42.50 4.94
2705 6200 3.345808 CGCTGTCACCAACACGGG 61.346 66.667 0.00 0.00 40.22 5.28
2706 6201 2.203153 GCTGTCACCAACACGGGT 60.203 61.111 0.00 0.00 43.56 5.28
2707 6202 1.070105 GCTGTCACCAACACGGGTA 59.930 57.895 0.00 0.00 39.79 3.69
2708 6203 0.949105 GCTGTCACCAACACGGGTAG 60.949 60.000 0.00 0.00 39.79 3.18
2709 6204 0.949105 CTGTCACCAACACGGGTAGC 60.949 60.000 0.00 0.00 39.79 3.58
2710 6205 1.370064 GTCACCAACACGGGTAGCT 59.630 57.895 0.00 0.00 39.79 3.32
2731 6233 2.291475 TGGTTGCTTGGCATGGATCTTA 60.291 45.455 2.33 0.00 38.76 2.10
2781 6283 3.965539 CTTGGTCAGAGGGCGCCTG 62.966 68.421 28.56 17.63 31.76 4.85
2811 6662 0.618458 ATAGTCGCTTGCTTGGGGAA 59.382 50.000 0.00 0.00 0.00 3.97
2989 6896 3.849574 TGGATTGAGTCATAAGGTTCCCA 59.150 43.478 0.00 0.00 0.00 4.37
3091 7000 1.979809 TTGGGGCCCTATCTGAAGAA 58.020 50.000 25.93 2.64 0.00 2.52
3092 7001 1.511613 TGGGGCCCTATCTGAAGAAG 58.488 55.000 25.93 0.00 0.00 2.85
3296 8101 8.633075 TTGATGTTCAAAGTTTCATCTTGAAC 57.367 30.769 16.25 16.25 32.81 3.18
3408 8214 3.062639 CGTACATGTTCATGAGAAGCACC 59.937 47.826 17.96 0.00 33.63 5.01
3409 8215 3.144657 ACATGTTCATGAGAAGCACCA 57.855 42.857 17.96 0.00 33.63 4.17
3410 8216 3.489355 ACATGTTCATGAGAAGCACCAA 58.511 40.909 17.96 0.00 33.63 3.67
3411 8217 3.254166 ACATGTTCATGAGAAGCACCAAC 59.746 43.478 17.96 0.00 33.63 3.77
3412 8218 3.213206 TGTTCATGAGAAGCACCAACT 57.787 42.857 0.00 0.00 33.63 3.16
3413 8219 3.141398 TGTTCATGAGAAGCACCAACTC 58.859 45.455 0.00 0.00 33.63 3.01
3458 8280 2.896685 TGGGTCCATGAATGACCAAAAC 59.103 45.455 17.97 4.89 40.58 2.43
3787 8610 0.176680 ATCGATGCAGAAGCGTTCCT 59.823 50.000 0.00 0.00 46.23 3.36
3961 8803 8.156820 TGTGAGTAAATTACTATATGCTGCCAT 58.843 33.333 5.55 0.00 39.59 4.40
3995 8846 5.289434 CCACAACTCTGCTTTCTTCAAAAAC 59.711 40.000 0.00 0.00 0.00 2.43
4015 8866 2.022195 CTGCAGCTTCTGTATGGCAAT 58.978 47.619 0.00 0.00 33.43 3.56
4081 8932 2.297033 CCTGCCTCAGAAGCTCTCTATC 59.703 54.545 0.00 0.00 32.44 2.08
4141 8992 2.005451 CTCAGCACATACAACAGAGCC 58.995 52.381 0.00 0.00 0.00 4.70
4162 9013 2.244651 GGTCGCGTTCAACACAGCT 61.245 57.895 5.77 0.00 0.00 4.24
4282 9133 2.632377 ACCAAATACGGTGAGCTCATG 58.368 47.619 21.47 17.75 38.07 3.07
4283 9134 2.236146 ACCAAATACGGTGAGCTCATGA 59.764 45.455 21.47 5.99 38.07 3.07
4284 9135 3.118261 ACCAAATACGGTGAGCTCATGAT 60.118 43.478 21.47 10.57 38.07 2.45
4296 9147 6.279123 GTGAGCTCATGATCAAATGTCTCTA 58.721 40.000 21.47 0.00 40.52 2.43
4299 9152 7.441458 TGAGCTCATGATCAAATGTCTCTAATG 59.559 37.037 13.74 0.00 35.49 1.90
4300 9153 7.506971 AGCTCATGATCAAATGTCTCTAATGA 58.493 34.615 0.00 0.00 0.00 2.57
4301 9154 8.158132 AGCTCATGATCAAATGTCTCTAATGAT 58.842 33.333 0.00 0.00 33.64 2.45
4302 9155 8.784994 GCTCATGATCAAATGTCTCTAATGATT 58.215 33.333 0.00 0.00 31.24 2.57
4304 9157 9.841295 TCATGATCAAATGTCTCTAATGATTCA 57.159 29.630 0.00 0.00 31.24 2.57
4305 9158 9.880064 CATGATCAAATGTCTCTAATGATTCAC 57.120 33.333 0.00 0.00 31.24 3.18
4306 9159 8.134905 TGATCAAATGTCTCTAATGATTCACG 57.865 34.615 0.00 0.00 31.24 4.35
4308 9161 7.294676 TCAAATGTCTCTAATGATTCACGTG 57.705 36.000 9.94 9.94 0.00 4.49
4309 9162 7.096551 TCAAATGTCTCTAATGATTCACGTGA 58.903 34.615 15.76 15.76 0.00 4.35
4310 9163 7.765819 TCAAATGTCTCTAATGATTCACGTGAT 59.234 33.333 20.80 9.63 0.00 3.06
4312 9165 8.498054 AATGTCTCTAATGATTCACGTGATTT 57.502 30.769 20.80 10.29 0.00 2.17
4313 9166 7.525688 TGTCTCTAATGATTCACGTGATTTC 57.474 36.000 20.80 18.84 0.00 2.17
4314 9167 7.323420 TGTCTCTAATGATTCACGTGATTTCT 58.677 34.615 20.80 4.58 0.00 2.52
4564 9418 4.889409 AGACCAAAGCTCAAGTTTGATCAA 59.111 37.500 3.38 3.38 37.10 2.57
4609 14682 3.570125 ACCAAGAGAAGGTAGCAAAAAGC 59.430 43.478 0.00 0.00 37.67 3.51
4622 14695 4.235382 GCAAAAAGCGCAATTGATGTAG 57.765 40.909 19.69 0.00 0.00 2.74
4627 14700 7.305418 GCAAAAAGCGCAATTGATGTAGTATAC 60.305 37.037 19.69 0.00 43.42 1.47
4668 14744 8.658499 TGTTTAGTTCTTCAAGGTCTTAGTTC 57.342 34.615 0.00 0.00 0.00 3.01
4672 14749 6.292150 AGTTCTTCAAGGTCTTAGTTCAAGG 58.708 40.000 0.00 0.00 34.76 3.61
4698 14775 9.914131 GACATGCTAGATTTTTAGTTTTTCCTT 57.086 29.630 0.00 0.00 0.00 3.36
4741 14818 9.410556 CACAAGGAATAGAAATGGTTTTAACAG 57.589 33.333 0.00 0.00 0.00 3.16
4756 14833 7.094631 GGTTTTAACAGGTTTCTTGTGTTCTT 58.905 34.615 0.00 0.00 35.95 2.52
4808 16490 2.509336 GCATGGACGGTGGACTCG 60.509 66.667 0.00 0.00 0.00 4.18
4829 16511 6.260050 ACTCGACAAAGACTTCATTTTTAGCA 59.740 34.615 0.00 0.00 0.00 3.49
4853 16535 7.501559 GCACATATTGATCCATCTAGGCATATT 59.498 37.037 0.00 0.00 37.29 1.28
4855 16537 8.775151 ACATATTGATCCATCTAGGCATATTGA 58.225 33.333 0.00 0.00 37.29 2.57
4858 16540 6.244552 TGATCCATCTAGGCATATTGATCC 57.755 41.667 0.00 0.00 37.29 3.36
4859 16541 5.727766 TGATCCATCTAGGCATATTGATCCA 59.272 40.000 0.00 0.00 37.29 3.41
4860 16542 6.388983 TGATCCATCTAGGCATATTGATCCAT 59.611 38.462 0.00 0.00 37.29 3.41
4861 16543 6.244552 TCCATCTAGGCATATTGATCCATC 57.755 41.667 0.00 0.00 37.29 3.51
4862 16544 5.968784 TCCATCTAGGCATATTGATCCATCT 59.031 40.000 0.00 0.00 37.29 2.90
4863 16545 7.134842 TCCATCTAGGCATATTGATCCATCTA 58.865 38.462 0.00 0.00 37.29 1.98
4864 16546 7.624879 TCCATCTAGGCATATTGATCCATCTAA 59.375 37.037 0.00 0.00 37.29 2.10
4865 16547 8.438373 CCATCTAGGCATATTGATCCATCTAAT 58.562 37.037 0.00 0.00 0.00 1.73
4866 16548 9.274206 CATCTAGGCATATTGATCCATCTAATG 57.726 37.037 0.00 0.00 0.00 1.90
4882 16564 8.567285 CCATCTAATGGTAGGATGTATTTTCC 57.433 38.462 0.00 0.00 45.54 3.13
4883 16565 7.611855 CCATCTAATGGTAGGATGTATTTTCCC 59.388 40.741 0.00 0.00 45.54 3.97
4884 16566 7.947782 TCTAATGGTAGGATGTATTTTCCCT 57.052 36.000 0.00 0.00 33.45 4.20
5170 16852 8.808240 AGGTTAAATCCATACCTACTCCATAA 57.192 34.615 0.00 0.00 40.42 1.90
5220 16902 8.073768 TGCAAGAAACAACTACAACTATTAAGC 58.926 33.333 0.00 0.00 0.00 3.09
5225 16907 9.724839 GAAACAACTACAACTATTAAGCAAACA 57.275 29.630 0.00 0.00 0.00 2.83
5233 16915 6.375455 ACAACTATTAAGCAAACAGATCAGGG 59.625 38.462 0.00 0.00 0.00 4.45
5234 16916 5.440610 ACTATTAAGCAAACAGATCAGGGG 58.559 41.667 0.00 0.00 0.00 4.79
5269 16951 2.287788 CCACCACTGCACAAACATCTTC 60.288 50.000 0.00 0.00 0.00 2.87
5280 16962 3.815401 ACAAACATCTTCAGTCCCTTTCG 59.185 43.478 0.00 0.00 0.00 3.46
5288 16970 0.392998 CAGTCCCTTTCGACCCATGG 60.393 60.000 4.14 4.14 32.91 3.66
5294 16976 0.811281 CTTTCGACCCATGGAAAGGC 59.189 55.000 15.22 0.00 43.35 4.35
5361 17043 1.548719 TGTACCGTTGATCTGGACCTG 59.451 52.381 6.27 0.00 0.00 4.00
5419 17101 4.151689 TCGAACCGACATTTGAAGATTGAC 59.848 41.667 0.00 0.00 0.00 3.18
5422 17104 2.159430 CCGACATTTGAAGATTGACGCA 59.841 45.455 0.00 0.00 0.00 5.24
5423 17105 3.410850 CGACATTTGAAGATTGACGCAG 58.589 45.455 0.00 0.00 0.00 5.18
5440 17122 2.064762 GCAGCGATGATGATAGTGACC 58.935 52.381 4.02 0.00 0.00 4.02
5443 17125 2.036475 AGCGATGATGATAGTGACCACC 59.964 50.000 0.00 0.00 0.00 4.61
5445 17127 2.289072 CGATGATGATAGTGACCACCCC 60.289 54.545 0.00 0.00 0.00 4.95
5448 17130 2.238646 TGATGATAGTGACCACCCCAAC 59.761 50.000 0.00 0.00 0.00 3.77
5458 17140 4.344865 ACCCCAACGAGCGCCAAT 62.345 61.111 2.29 0.00 0.00 3.16
5459 17141 3.814268 CCCCAACGAGCGCCAATG 61.814 66.667 2.29 0.00 0.00 2.82
5460 17142 2.745884 CCCAACGAGCGCCAATGA 60.746 61.111 2.29 0.00 0.00 2.57
5461 17143 2.480555 CCAACGAGCGCCAATGAC 59.519 61.111 2.29 0.00 0.00 3.06
5462 17144 2.324330 CCAACGAGCGCCAATGACA 61.324 57.895 2.29 0.00 0.00 3.58
5463 17145 1.154413 CAACGAGCGCCAATGACAC 60.154 57.895 2.29 0.00 0.00 3.67
5464 17146 2.325082 AACGAGCGCCAATGACACC 61.325 57.895 2.29 0.00 0.00 4.16
5465 17147 3.499737 CGAGCGCCAATGACACCC 61.500 66.667 2.29 0.00 0.00 4.61
5466 17148 3.134127 GAGCGCCAATGACACCCC 61.134 66.667 2.29 0.00 0.00 4.95
5467 17149 4.740822 AGCGCCAATGACACCCCC 62.741 66.667 2.29 0.00 0.00 5.40
5469 17151 2.044053 CGCCAATGACACCCCCAT 60.044 61.111 0.00 0.00 0.00 4.00
5470 17152 2.120909 CGCCAATGACACCCCCATC 61.121 63.158 0.00 0.00 0.00 3.51
5471 17153 1.758122 GCCAATGACACCCCCATCC 60.758 63.158 0.00 0.00 0.00 3.51
5472 17154 1.696686 CCAATGACACCCCCATCCA 59.303 57.895 0.00 0.00 0.00 3.41
5473 17155 0.684153 CCAATGACACCCCCATCCAC 60.684 60.000 0.00 0.00 0.00 4.02
5474 17156 0.684153 CAATGACACCCCCATCCACC 60.684 60.000 0.00 0.00 0.00 4.61
5475 17157 1.874299 AATGACACCCCCATCCACCC 61.874 60.000 0.00 0.00 0.00 4.61
5476 17158 2.938798 GACACCCCCATCCACCCA 60.939 66.667 0.00 0.00 0.00 4.51
5477 17159 3.264845 ACACCCCCATCCACCCAC 61.265 66.667 0.00 0.00 0.00 4.61
5478 17160 3.264052 CACCCCCATCCACCCACA 61.264 66.667 0.00 0.00 0.00 4.17
5479 17161 2.204448 ACCCCCATCCACCCACAT 60.204 61.111 0.00 0.00 0.00 3.21
5480 17162 1.861656 ACCCCCATCCACCCACATT 60.862 57.895 0.00 0.00 0.00 2.71
5481 17163 1.076044 CCCCCATCCACCCACATTC 60.076 63.158 0.00 0.00 0.00 2.67
5482 17164 1.076044 CCCCATCCACCCACATTCC 60.076 63.158 0.00 0.00 0.00 3.01
5483 17165 1.076044 CCCATCCACCCACATTCCC 60.076 63.158 0.00 0.00 0.00 3.97
5484 17166 1.696686 CCATCCACCCACATTCCCA 59.303 57.895 0.00 0.00 0.00 4.37
5485 17167 0.040942 CCATCCACCCACATTCCCAA 59.959 55.000 0.00 0.00 0.00 4.12
5486 17168 1.343277 CCATCCACCCACATTCCCAAT 60.343 52.381 0.00 0.00 0.00 3.16
5487 17169 2.469952 CATCCACCCACATTCCCAATT 58.530 47.619 0.00 0.00 0.00 2.32
5488 17170 2.711895 TCCACCCACATTCCCAATTT 57.288 45.000 0.00 0.00 0.00 1.82
5489 17171 2.534990 TCCACCCACATTCCCAATTTC 58.465 47.619 0.00 0.00 0.00 2.17
5490 17172 1.204467 CCACCCACATTCCCAATTTCG 59.796 52.381 0.00 0.00 0.00 3.46
5491 17173 1.204467 CACCCACATTCCCAATTTCGG 59.796 52.381 0.00 0.00 0.00 4.30
5492 17174 1.203125 ACCCACATTCCCAATTTCGGT 60.203 47.619 0.00 0.00 0.00 4.69
5493 17175 1.899142 CCCACATTCCCAATTTCGGTT 59.101 47.619 0.00 0.00 0.00 4.44
5494 17176 2.301583 CCCACATTCCCAATTTCGGTTT 59.698 45.455 0.00 0.00 0.00 3.27
5495 17177 3.584834 CCACATTCCCAATTTCGGTTTC 58.415 45.455 0.00 0.00 0.00 2.78
5496 17178 3.258123 CCACATTCCCAATTTCGGTTTCT 59.742 43.478 0.00 0.00 0.00 2.52
5497 17179 4.461081 CCACATTCCCAATTTCGGTTTCTA 59.539 41.667 0.00 0.00 0.00 2.10
5498 17180 5.127031 CCACATTCCCAATTTCGGTTTCTAT 59.873 40.000 0.00 0.00 0.00 1.98
5499 17181 6.350949 CCACATTCCCAATTTCGGTTTCTATT 60.351 38.462 0.00 0.00 0.00 1.73
5500 17182 6.751888 CACATTCCCAATTTCGGTTTCTATTC 59.248 38.462 0.00 0.00 0.00 1.75
5501 17183 5.907866 TTCCCAATTTCGGTTTCTATTCC 57.092 39.130 0.00 0.00 0.00 3.01
5502 17184 4.924625 TCCCAATTTCGGTTTCTATTCCA 58.075 39.130 0.00 0.00 0.00 3.53
5503 17185 4.947388 TCCCAATTTCGGTTTCTATTCCAG 59.053 41.667 0.00 0.00 0.00 3.86
5504 17186 4.440112 CCCAATTTCGGTTTCTATTCCAGC 60.440 45.833 0.00 0.00 0.00 4.85
5505 17187 4.440112 CCAATTTCGGTTTCTATTCCAGCC 60.440 45.833 0.00 0.00 0.00 4.85
5543 17225 6.214615 TGTCTGTCTAATGGTTTATCCTCCAA 59.785 38.462 0.00 0.00 37.27 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.284405 TTCTCCCCCACTCCGTCC 60.284 66.667 0.00 0.00 0.00 4.79
36 37 3.673484 GGTTGGGTCGTCGTCCGA 61.673 66.667 2.39 0.00 45.00 4.55
107 108 2.202932 CCATTCACCTCTCCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
125 126 0.949105 CACGAGCAAACCTTAGCCGT 60.949 55.000 0.00 0.00 37.86 5.68
142 143 3.450115 CTCCTCGACCCCCGACAC 61.450 72.222 0.00 0.00 43.23 3.67
151 152 3.827898 CCGTCCTGCCTCCTCGAC 61.828 72.222 0.00 0.00 0.00 4.20
166 167 0.671781 CAGCTTCCACTTCCTGACCG 60.672 60.000 0.00 0.00 0.00 4.79
169 170 0.397941 CCACAGCTTCCACTTCCTGA 59.602 55.000 0.00 0.00 0.00 3.86
182 183 1.523938 GGACCGGCTAATCCACAGC 60.524 63.158 0.00 0.00 38.35 4.40
228 229 0.178767 TCAATCACATGGGCGGAGAG 59.821 55.000 0.00 0.00 0.00 3.20
230 231 0.392863 TGTCAATCACATGGGCGGAG 60.393 55.000 0.00 0.00 0.00 4.63
234 235 2.756760 ACTGATTGTCAATCACATGGGC 59.243 45.455 21.80 0.00 42.69 5.36
249 250 0.673644 CGGGCTTCGGTTCACTGATT 60.674 55.000 0.00 0.00 34.75 2.57
251 252 2.342279 CGGGCTTCGGTTCACTGA 59.658 61.111 0.00 0.00 34.75 3.41
252 253 3.423154 GCGGGCTTCGGTTCACTG 61.423 66.667 2.64 0.00 39.69 3.66
253 254 4.699522 GGCGGGCTTCGGTTCACT 62.700 66.667 0.00 0.00 39.69 3.41
256 257 4.717313 AAGGGCGGGCTTCGGTTC 62.717 66.667 0.26 0.00 39.69 3.62
294 1970 0.969409 GCCGTCCACCTACCTACACT 60.969 60.000 0.00 0.00 0.00 3.55
295 1971 1.514553 GCCGTCCACCTACCTACAC 59.485 63.158 0.00 0.00 0.00 2.90
298 1974 2.440796 CGGCCGTCCACCTACCTA 60.441 66.667 19.50 0.00 0.00 3.08
301 1977 3.376078 TGACGGCCGTCCACCTAC 61.376 66.667 45.59 26.70 43.97 3.18
316 1992 0.101579 TTGAGAACGCGTGACAGTGA 59.898 50.000 14.98 0.00 0.00 3.41
317 1993 0.504384 CTTGAGAACGCGTGACAGTG 59.496 55.000 14.98 6.86 0.00 3.66
318 1994 0.384309 TCTTGAGAACGCGTGACAGT 59.616 50.000 14.98 0.00 0.00 3.55
319 1995 0.778815 GTCTTGAGAACGCGTGACAG 59.221 55.000 14.98 5.11 0.00 3.51
320 1996 0.101579 TGTCTTGAGAACGCGTGACA 59.898 50.000 19.93 19.93 32.91 3.58
321 1997 0.778815 CTGTCTTGAGAACGCGTGAC 59.221 55.000 14.98 15.49 0.00 3.67
322 1998 0.384309 ACTGTCTTGAGAACGCGTGA 59.616 50.000 14.98 0.30 0.00 4.35
335 2011 1.963338 GCTTGCTCGGCAACTGTCT 60.963 57.895 7.15 0.00 43.99 3.41
354 2030 2.156098 ACTGGGAGCAAGAAGGCCA 61.156 57.895 5.01 0.00 0.00 5.36
355 2031 1.676967 CACTGGGAGCAAGAAGGCC 60.677 63.158 0.00 0.00 0.00 5.19
357 2033 2.037136 CGCACTGGGAGCAAGAAGG 61.037 63.158 0.00 0.00 0.00 3.46
358 2034 2.684843 GCGCACTGGGAGCAAGAAG 61.685 63.158 0.30 0.00 42.48 2.85
359 2035 2.669569 GCGCACTGGGAGCAAGAA 60.670 61.111 0.30 0.00 42.48 2.52
364 2040 2.815647 GTACTGCGCACTGGGAGC 60.816 66.667 5.66 0.00 43.33 4.70
385 3170 3.017442 TGGTTGGTTTCATTCACGTGAA 58.983 40.909 31.41 31.41 38.56 3.18
429 3214 3.149196 GCTTGAGACCTCATTTTGACCA 58.851 45.455 0.01 0.00 39.64 4.02
498 3284 4.400961 AAGGCCAGCCGCTCAGTC 62.401 66.667 5.01 0.00 41.95 3.51
499 3285 4.400961 GAAGGCCAGCCGCTCAGT 62.401 66.667 5.01 0.00 41.95 3.41
500 3286 4.093291 AGAAGGCCAGCCGCTCAG 62.093 66.667 5.01 0.00 41.95 3.35
501 3287 4.087892 GAGAAGGCCAGCCGCTCA 62.088 66.667 21.91 0.00 40.01 4.26
506 3312 4.847444 GGAGCGAGAAGGCCAGCC 62.847 72.222 5.01 0.00 0.00 4.85
572 3378 5.614324 TGGTGACAAAGAAGAAGAGAAGA 57.386 39.130 0.00 0.00 37.44 2.87
632 3438 0.174617 CACGCTCCTCTTCCTCTTCC 59.825 60.000 0.00 0.00 0.00 3.46
683 3489 4.853050 GCGAGCAGCCATCCAGCT 62.853 66.667 0.00 0.00 46.45 4.24
883 3689 4.366684 GTGGGGCTGGGACTTGGG 62.367 72.222 0.00 0.00 0.00 4.12
884 3690 4.366684 GGTGGGGCTGGGACTTGG 62.367 72.222 0.00 0.00 0.00 3.61
886 3692 3.580319 GTGGTGGGGCTGGGACTT 61.580 66.667 0.00 0.00 0.00 3.01
887 3693 4.918360 TGTGGTGGGGCTGGGACT 62.918 66.667 0.00 0.00 0.00 3.85
888 3694 3.224007 ATTGTGGTGGGGCTGGGAC 62.224 63.158 0.00 0.00 0.00 4.46
889 3695 2.863484 ATTGTGGTGGGGCTGGGA 60.863 61.111 0.00 0.00 0.00 4.37
891 3697 1.679977 CTCATTGTGGTGGGGCTGG 60.680 63.158 0.00 0.00 0.00 4.85
904 3728 1.733912 CATGCGCCGTATATGCTCATT 59.266 47.619 4.18 0.00 32.19 2.57
940 3768 3.955101 CTCGCGAGCCCCGAGTAG 61.955 72.222 25.07 0.00 45.17 2.57
965 3796 1.715993 GTGTCCCTCTCGCTTTTCTC 58.284 55.000 0.00 0.00 0.00 2.87
995 3826 2.232208 CTGTCTGTCTGTAGCATGTGGA 59.768 50.000 0.00 0.00 0.00 4.02
1006 3842 1.274728 CCTTGGACCTCTGTCTGTCTG 59.725 57.143 0.00 0.00 41.47 3.51
1312 4187 2.426023 GGGGATCGGGAATGGACG 59.574 66.667 0.00 0.00 0.00 4.79
1313 4188 2.836888 GGGGGATCGGGAATGGAC 59.163 66.667 0.00 0.00 0.00 4.02
1346 4221 9.504708 AAGCAGAATCTTGGAGATAGAATAATG 57.495 33.333 0.00 0.00 32.89 1.90
1397 4744 2.181521 TGTCGCCAAACACGGGTTC 61.182 57.895 2.08 0.00 35.82 3.62
1461 4815 2.876550 GAGAAGTTTACCACGGTGCTTT 59.123 45.455 1.68 0.00 0.00 3.51
1463 4817 1.414919 TGAGAAGTTTACCACGGTGCT 59.585 47.619 1.68 0.00 0.00 4.40
1538 4910 1.964552 CTCATGGGATTCAGTCAGCC 58.035 55.000 0.00 0.00 0.00 4.85
1669 5046 5.404366 TGCTACTGTACATTGAAGAACGAAC 59.596 40.000 0.00 0.00 0.00 3.95
1762 5157 0.175073 GTAAGCAGTACTCCGGTGGG 59.825 60.000 8.63 0.00 0.00 4.61
1776 5171 4.566987 ACTGTTGGTTAGCTACTGTAAGC 58.433 43.478 6.72 0.00 43.11 3.09
1805 5215 6.477033 GCCTGTATGAATATGATACGATGGAC 59.523 42.308 0.00 0.00 0.00 4.02
1808 5218 8.972349 GTATGCCTGTATGAATATGATACGATG 58.028 37.037 0.00 0.00 0.00 3.84
1809 5219 8.918116 AGTATGCCTGTATGAATATGATACGAT 58.082 33.333 0.00 0.00 0.00 3.73
1810 5220 8.190784 CAGTATGCCTGTATGAATATGATACGA 58.809 37.037 0.00 0.00 36.37 3.43
1811 5221 8.345224 CAGTATGCCTGTATGAATATGATACG 57.655 38.462 0.00 0.00 36.37 3.06
1826 5236 1.462283 GCGCATGATACAGTATGCCTG 59.538 52.381 0.30 0.00 45.17 4.85
1827 5237 1.345741 AGCGCATGATACAGTATGCCT 59.654 47.619 11.47 0.00 45.17 4.75
1828 5238 1.462283 CAGCGCATGATACAGTATGCC 59.538 52.381 11.47 0.00 45.17 4.40
1829 5239 1.136141 GCAGCGCATGATACAGTATGC 60.136 52.381 11.47 1.40 44.67 3.14
1830 5240 1.125566 CGCAGCGCATGATACAGTATG 59.874 52.381 11.47 0.00 46.00 2.39
1831 5241 1.269778 ACGCAGCGCATGATACAGTAT 60.270 47.619 16.61 0.00 0.00 2.12
1832 5242 0.102300 ACGCAGCGCATGATACAGTA 59.898 50.000 16.61 0.00 0.00 2.74
1833 5243 0.740868 AACGCAGCGCATGATACAGT 60.741 50.000 16.61 0.00 0.00 3.55
1834 5244 1.190984 CTAACGCAGCGCATGATACAG 59.809 52.381 16.61 0.00 0.00 2.74
1837 5247 1.592543 CAACTAACGCAGCGCATGATA 59.407 47.619 16.61 0.00 0.00 2.15
1850 5260 1.832366 GAGAGGGAGGGACCAACTAAC 59.168 57.143 0.00 0.00 41.20 2.34
1869 5279 6.071320 TGAATGAATAGATTCTCGAGGAGGA 58.929 40.000 13.56 0.00 37.67 3.71
1870 5280 6.338214 TGAATGAATAGATTCTCGAGGAGG 57.662 41.667 13.56 0.00 37.67 4.30
1871 5281 6.365789 GCTTGAATGAATAGATTCTCGAGGAG 59.634 42.308 13.56 0.00 37.67 3.69
1872 5282 6.219473 GCTTGAATGAATAGATTCTCGAGGA 58.781 40.000 13.56 3.44 37.67 3.71
1873 5283 5.407995 GGCTTGAATGAATAGATTCTCGAGG 59.592 44.000 13.56 0.00 37.67 4.63
1874 5284 5.987953 TGGCTTGAATGAATAGATTCTCGAG 59.012 40.000 5.93 5.93 37.67 4.04
1875 5285 5.755375 GTGGCTTGAATGAATAGATTCTCGA 59.245 40.000 4.02 0.00 37.67 4.04
1876 5286 5.757320 AGTGGCTTGAATGAATAGATTCTCG 59.243 40.000 4.02 0.00 37.67 4.04
1877 5287 6.541641 ACAGTGGCTTGAATGAATAGATTCTC 59.458 38.462 4.02 0.00 37.67 2.87
1878 5288 6.421485 ACAGTGGCTTGAATGAATAGATTCT 58.579 36.000 4.02 0.00 37.67 2.40
1879 5289 6.238593 GGACAGTGGCTTGAATGAATAGATTC 60.239 42.308 0.00 0.00 37.31 2.52
1880 5290 5.591877 GGACAGTGGCTTGAATGAATAGATT 59.408 40.000 0.00 0.00 0.00 2.40
1885 5295 3.446442 AGGACAGTGGCTTGAATGAAT 57.554 42.857 0.00 0.00 0.00 2.57
1895 5305 1.566018 CGGTTCGAAAGGACAGTGGC 61.566 60.000 0.00 0.00 43.15 5.01
1898 5315 0.317479 CTCCGGTTCGAAAGGACAGT 59.683 55.000 16.84 0.00 43.15 3.55
1942 5359 0.676151 CTGAAGAGAACAGCTGGGCC 60.676 60.000 19.93 6.41 0.00 5.80
1957 5374 2.036387 TCTCCCGTGTCAAAGACTGAA 58.964 47.619 0.00 0.00 35.22 3.02
1961 5378 1.666311 CGAGTCTCCCGTGTCAAAGAC 60.666 57.143 0.00 0.00 38.71 3.01
2146 5623 7.118390 ACTGTATCTGAAGTGCTGAACAATAAC 59.882 37.037 0.00 0.00 0.00 1.89
2157 5634 5.410924 TGTGACATACTGTATCTGAAGTGC 58.589 41.667 0.00 0.00 0.00 4.40
2158 5635 7.600375 AGTTTGTGACATACTGTATCTGAAGTG 59.400 37.037 7.88 0.00 0.00 3.16
2182 5659 4.009675 ACATGATTGTCGGCACATAAAGT 58.990 39.130 0.00 0.00 30.55 2.66
2234 5716 2.125512 ATTCACGTCCTCAGCCGC 60.126 61.111 0.00 0.00 0.00 6.53
2311 5793 6.116806 TCAGTTAGCTTCAGGACTAGAGTAG 58.883 44.000 0.00 0.00 0.00 2.57
2312 5794 6.063496 TCAGTTAGCTTCAGGACTAGAGTA 57.937 41.667 0.00 0.00 0.00 2.59
2313 5795 4.924625 TCAGTTAGCTTCAGGACTAGAGT 58.075 43.478 0.00 0.00 0.00 3.24
2314 5796 5.827797 AGATCAGTTAGCTTCAGGACTAGAG 59.172 44.000 0.00 0.00 0.00 2.43
2315 5797 5.761205 AGATCAGTTAGCTTCAGGACTAGA 58.239 41.667 0.00 0.00 0.00 2.43
2359 5841 8.328864 CAATTAGAAGAGTGGCGTTCTTATAAC 58.671 37.037 15.49 1.53 39.64 1.89
2422 5908 6.349300 ACATGAGGATAATTGCGTACTTCTT 58.651 36.000 0.00 0.00 0.00 2.52
2465 5951 6.187727 ACCCCGACATCATGTAGAATTAAT 57.812 37.500 0.00 0.00 0.00 1.40
2466 5952 5.623956 ACCCCGACATCATGTAGAATTAA 57.376 39.130 0.00 0.00 0.00 1.40
2499 5985 2.029290 GCCGTAGAGTCCAGAACAAAGA 60.029 50.000 0.00 0.00 0.00 2.52
2500 5986 2.338500 GCCGTAGAGTCCAGAACAAAG 58.662 52.381 0.00 0.00 0.00 2.77
2502 5988 0.242825 CGCCGTAGAGTCCAGAACAA 59.757 55.000 0.00 0.00 0.00 2.83
2503 5989 0.892358 ACGCCGTAGAGTCCAGAACA 60.892 55.000 0.00 0.00 0.00 3.18
2505 5991 0.892358 ACACGCCGTAGAGTCCAGAA 60.892 55.000 0.00 0.00 0.00 3.02
2507 5993 1.136984 GACACGCCGTAGAGTCCAG 59.863 63.158 0.00 0.00 0.00 3.86
2508 5994 2.338015 GGACACGCCGTAGAGTCCA 61.338 63.158 17.42 0.00 46.56 4.02
2509 5995 2.488820 GGACACGCCGTAGAGTCC 59.511 66.667 9.15 9.15 42.77 3.85
2580 6068 1.022982 CATCATCATCATCGCCCGGG 61.023 60.000 19.09 19.09 0.00 5.73
2586 6074 2.603560 CCGCTCATCATCATCATCATCG 59.396 50.000 0.00 0.00 0.00 3.84
2587 6075 2.352034 GCCGCTCATCATCATCATCATC 59.648 50.000 0.00 0.00 0.00 2.92
2588 6076 2.290071 TGCCGCTCATCATCATCATCAT 60.290 45.455 0.00 0.00 0.00 2.45
2589 6077 1.071071 TGCCGCTCATCATCATCATCA 59.929 47.619 0.00 0.00 0.00 3.07
2590 6078 1.732809 CTGCCGCTCATCATCATCATC 59.267 52.381 0.00 0.00 0.00 2.92
2591 6079 1.610886 CCTGCCGCTCATCATCATCAT 60.611 52.381 0.00 0.00 0.00 2.45
2708 6203 1.610554 ATCCATGCCAAGCAACCAGC 61.611 55.000 0.00 0.00 43.62 4.85
2709 6204 0.458669 GATCCATGCCAAGCAACCAG 59.541 55.000 0.00 0.00 43.62 4.00
2710 6205 0.040058 AGATCCATGCCAAGCAACCA 59.960 50.000 0.00 0.00 43.62 3.67
2731 6233 2.980233 GCCGCAAGAAGCCACACT 60.980 61.111 0.00 0.00 41.38 3.55
2781 6283 3.786818 GCAAGCGACTATGACTTCATTGC 60.787 47.826 0.00 0.00 37.76 3.56
2811 6662 4.895297 ACATTTTGTCATCCTCACCACTTT 59.105 37.500 0.00 0.00 0.00 2.66
2927 6831 3.574826 AGTTGCCCGGTTAATTAGCAAAA 59.425 39.130 12.64 0.00 44.32 2.44
2928 6832 3.158676 AGTTGCCCGGTTAATTAGCAAA 58.841 40.909 12.64 0.00 44.32 3.68
2929 6833 2.797786 AGTTGCCCGGTTAATTAGCAA 58.202 42.857 7.79 7.79 40.89 3.91
2930 6834 2.500392 AGTTGCCCGGTTAATTAGCA 57.500 45.000 0.00 0.00 0.00 3.49
3091 7000 9.454859 AGAGCAAAATTTTAAGCAGTATACTCT 57.545 29.630 13.78 0.85 0.00 3.24
3092 7001 9.709600 GAGAGCAAAATTTTAAGCAGTATACTC 57.290 33.333 13.78 0.00 0.00 2.59
3408 8214 8.958119 TTAGTAAGGCTAATAACCATGAGTTG 57.042 34.615 9.13 0.00 35.65 3.16
3413 8219 9.436957 CCACTATTAGTAAGGCTAATAACCATG 57.563 37.037 0.00 0.00 46.27 3.66
3423 8243 4.003584 TGGACCCACTATTAGTAAGGCT 57.996 45.455 10.57 0.00 0.00 4.58
3458 8280 6.757897 TGTTTAAGCTTTCACCTGGATATG 57.242 37.500 3.20 0.00 0.00 1.78
3510 8332 7.763071 ACTCCGTTACTGTAATTAGAACCAATC 59.237 37.037 3.23 0.00 0.00 2.67
3711 8533 7.520119 TTGCTCATTTACTATCAACTGTACG 57.480 36.000 0.00 0.00 0.00 3.67
3712 8534 8.936864 AGTTTGCTCATTTACTATCAACTGTAC 58.063 33.333 0.00 0.00 0.00 2.90
3713 8535 9.502091 AAGTTTGCTCATTTACTATCAACTGTA 57.498 29.630 0.00 0.00 0.00 2.74
3714 8536 7.986085 AGTTTGCTCATTTACTATCAACTGT 57.014 32.000 0.00 0.00 0.00 3.55
3933 8760 8.499162 GGCAGCATATAGTAATTTACTCACAAG 58.501 37.037 12.26 2.83 40.14 3.16
3940 8767 7.413000 CCGTCATGGCAGCATATAGTAATTTAC 60.413 40.741 0.00 0.00 0.00 2.01
3961 8803 0.828022 AGAGTTGTGGTTGTCCGTCA 59.172 50.000 0.00 0.00 36.30 4.35
3995 8846 1.456296 TTGCCATACAGAAGCTGCAG 58.544 50.000 10.11 10.11 34.37 4.41
4015 8866 0.178944 TCCAGAAGTTCCGACTCCCA 60.179 55.000 0.00 0.00 34.21 4.37
4081 8932 2.033492 GTCACTGTCGTTTTTACGTGGG 60.033 50.000 0.00 0.00 0.00 4.61
4192 9043 1.206831 GGTCGCGTTTTTCAGCTCC 59.793 57.895 5.77 0.00 0.00 4.70
4279 9130 9.880064 GTGAATCATTAGAGACATTTGATCATG 57.120 33.333 0.00 0.00 0.00 3.07
4282 9133 8.060679 CACGTGAATCATTAGAGACATTTGATC 58.939 37.037 10.90 0.00 0.00 2.92
4283 9134 7.765819 TCACGTGAATCATTAGAGACATTTGAT 59.234 33.333 17.62 0.00 0.00 2.57
4284 9135 7.096551 TCACGTGAATCATTAGAGACATTTGA 58.903 34.615 17.62 0.00 0.00 2.69
4296 9147 6.748333 ATCACAGAAATCACGTGAATCATT 57.252 33.333 24.13 14.82 42.53 2.57
4299 9152 9.035607 AGTAATATCACAGAAATCACGTGAATC 57.964 33.333 24.13 22.20 42.53 2.52
4300 9153 8.948631 AGTAATATCACAGAAATCACGTGAAT 57.051 30.769 24.13 12.15 42.53 2.57
4301 9154 9.863845 TTAGTAATATCACAGAAATCACGTGAA 57.136 29.630 24.13 6.23 42.53 3.18
4302 9155 9.863845 TTTAGTAATATCACAGAAATCACGTGA 57.136 29.630 22.48 22.48 43.35 4.35
4564 9418 3.181451 TGATCTATCGGGCTTTGCAGAAT 60.181 43.478 0.00 0.00 0.00 2.40
4636 14712 6.507023 ACCTTGAAGAACTAAACATTGCAAG 58.493 36.000 4.94 0.00 0.00 4.01
4654 14730 5.551233 CATGTCCTTGAACTAAGACCTTGA 58.449 41.667 0.00 0.00 38.76 3.02
4668 14744 9.696917 AAAAACTAAAAATCTAGCATGTCCTTG 57.303 29.630 0.00 0.00 0.00 3.61
4672 14749 9.914131 AAGGAAAAACTAAAAATCTAGCATGTC 57.086 29.630 0.00 0.00 0.00 3.06
4741 14818 5.054390 TGTGAACAAGAACACAAGAAACC 57.946 39.130 0.00 0.00 42.72 3.27
4756 14833 9.804758 AAAACCGTTTCTATTTAATTGTGAACA 57.195 25.926 0.00 0.00 0.00 3.18
4808 16490 9.846248 ATATGTGCTAAAAATGAAGTCTTTGTC 57.154 29.630 0.00 0.00 0.00 3.18
4829 16511 8.775151 TCAATATGCCTAGATGGATCAATATGT 58.225 33.333 0.00 0.00 38.35 2.29
4836 16518 6.244552 TGGATCAATATGCCTAGATGGATC 57.755 41.667 0.00 0.00 38.35 3.36
4857 16539 7.611855 GGGAAAATACATCCTACCATTAGATGG 59.388 40.741 5.43 5.43 45.09 3.51
4858 16540 8.386264 AGGGAAAATACATCCTACCATTAGATG 58.614 37.037 0.00 0.00 37.14 2.90
4859 16541 8.525729 AGGGAAAATACATCCTACCATTAGAT 57.474 34.615 0.00 0.00 37.14 1.98
4860 16542 7.947782 AGGGAAAATACATCCTACCATTAGA 57.052 36.000 0.00 0.00 37.14 2.10
5143 16825 8.990693 ATGGAGTAGGTATGGATTTAACCTAT 57.009 34.615 3.93 0.00 45.22 2.57
5144 16826 9.901651 TTATGGAGTAGGTATGGATTTAACCTA 57.098 33.333 0.00 0.00 41.86 3.08
5145 16827 8.808240 TTATGGAGTAGGTATGGATTTAACCT 57.192 34.615 0.00 0.00 45.53 3.50
5170 16852 7.254455 GCACTGCGTCAAGTCATACTTATTTAT 60.254 37.037 0.00 0.00 36.03 1.40
5175 16857 3.250744 GCACTGCGTCAAGTCATACTTA 58.749 45.455 0.00 0.00 36.03 2.24
5190 16872 3.691049 TGTAGTTGTTTCTTGCACTGC 57.309 42.857 0.00 0.00 0.00 4.40
5204 16886 9.502091 TGATCTGTTTGCTTAATAGTTGTAGTT 57.498 29.630 0.00 0.00 0.00 2.24
5220 16902 1.952367 GCCTCACCCCTGATCTGTTTG 60.952 57.143 0.00 0.00 0.00 2.93
5225 16907 0.937441 TAGAGCCTCACCCCTGATCT 59.063 55.000 0.00 0.00 0.00 2.75
5233 16915 0.466124 GGTGGATGTAGAGCCTCACC 59.534 60.000 0.00 0.00 37.98 4.02
5234 16916 1.134670 GTGGTGGATGTAGAGCCTCAC 60.135 57.143 0.00 0.84 0.00 3.51
5269 16951 0.392998 CCATGGGTCGAAAGGGACTG 60.393 60.000 2.85 0.00 40.86 3.51
5280 16962 0.897621 CCTTTGCCTTTCCATGGGTC 59.102 55.000 13.02 0.00 0.00 4.46
5288 16970 1.956802 CGGTGACCCTTTGCCTTTC 59.043 57.895 0.00 0.00 0.00 2.62
5317 16999 0.676466 TGGGTGCGGTCTATTTGCTG 60.676 55.000 0.00 0.00 0.00 4.41
5403 17085 3.166657 GCTGCGTCAATCTTCAAATGTC 58.833 45.455 0.00 0.00 0.00 3.06
5404 17086 2.413239 CGCTGCGTCAATCTTCAAATGT 60.413 45.455 14.93 0.00 0.00 2.71
5419 17101 1.718178 GTCACTATCATCATCGCTGCG 59.282 52.381 17.25 17.25 0.00 5.18
5422 17104 2.036475 GGTGGTCACTATCATCATCGCT 59.964 50.000 0.93 0.00 0.00 4.93
5423 17105 2.408050 GGTGGTCACTATCATCATCGC 58.592 52.381 0.93 0.00 0.00 4.58
5443 17125 2.745884 TCATTGGCGCTCGTTGGG 60.746 61.111 7.64 0.00 0.00 4.12
5445 17127 1.154413 GTGTCATTGGCGCTCGTTG 60.154 57.895 7.64 0.21 0.00 4.10
5448 17130 3.499737 GGGTGTCATTGGCGCTCG 61.500 66.667 7.64 0.00 0.00 5.03
5457 17139 2.316586 GGGTGGATGGGGGTGTCAT 61.317 63.158 0.00 0.00 0.00 3.06
5458 17140 2.938798 GGGTGGATGGGGGTGTCA 60.939 66.667 0.00 0.00 0.00 3.58
5459 17141 2.938798 TGGGTGGATGGGGGTGTC 60.939 66.667 0.00 0.00 0.00 3.67
5460 17142 3.264845 GTGGGTGGATGGGGGTGT 61.265 66.667 0.00 0.00 0.00 4.16
5461 17143 2.166957 AATGTGGGTGGATGGGGGTG 62.167 60.000 0.00 0.00 0.00 4.61
5462 17144 1.861656 AATGTGGGTGGATGGGGGT 60.862 57.895 0.00 0.00 0.00 4.95
5463 17145 1.076044 GAATGTGGGTGGATGGGGG 60.076 63.158 0.00 0.00 0.00 5.40
5464 17146 1.076044 GGAATGTGGGTGGATGGGG 60.076 63.158 0.00 0.00 0.00 4.96
5465 17147 1.076044 GGGAATGTGGGTGGATGGG 60.076 63.158 0.00 0.00 0.00 4.00
5466 17148 0.040942 TTGGGAATGTGGGTGGATGG 59.959 55.000 0.00 0.00 0.00 3.51
5467 17149 2.163810 ATTGGGAATGTGGGTGGATG 57.836 50.000 0.00 0.00 0.00 3.51
5468 17150 2.946791 AATTGGGAATGTGGGTGGAT 57.053 45.000 0.00 0.00 0.00 3.41
5469 17151 2.534990 GAAATTGGGAATGTGGGTGGA 58.465 47.619 0.00 0.00 0.00 4.02
5470 17152 1.204467 CGAAATTGGGAATGTGGGTGG 59.796 52.381 0.00 0.00 0.00 4.61
5471 17153 1.204467 CCGAAATTGGGAATGTGGGTG 59.796 52.381 0.00 0.00 0.00 4.61
5472 17154 1.203125 ACCGAAATTGGGAATGTGGGT 60.203 47.619 0.00 0.00 32.89 4.51
5473 17155 1.555967 ACCGAAATTGGGAATGTGGG 58.444 50.000 0.00 0.00 30.83 4.61
5474 17156 3.258123 AGAAACCGAAATTGGGAATGTGG 59.742 43.478 0.00 0.00 0.00 4.17
5475 17157 4.519540 AGAAACCGAAATTGGGAATGTG 57.480 40.909 0.00 0.00 0.00 3.21
5476 17158 6.127451 GGAATAGAAACCGAAATTGGGAATGT 60.127 38.462 0.00 0.00 0.00 2.71
5477 17159 6.127479 TGGAATAGAAACCGAAATTGGGAATG 60.127 38.462 0.00 0.00 0.00 2.67
5478 17160 5.955355 TGGAATAGAAACCGAAATTGGGAAT 59.045 36.000 0.00 0.00 0.00 3.01
5479 17161 5.326069 TGGAATAGAAACCGAAATTGGGAA 58.674 37.500 0.00 0.00 0.00 3.97
5480 17162 4.924625 TGGAATAGAAACCGAAATTGGGA 58.075 39.130 0.00 0.00 0.00 4.37
5481 17163 4.440112 GCTGGAATAGAAACCGAAATTGGG 60.440 45.833 0.00 0.00 0.00 4.12
5482 17164 4.440112 GGCTGGAATAGAAACCGAAATTGG 60.440 45.833 0.00 0.00 0.00 3.16
5483 17165 4.672409 GGCTGGAATAGAAACCGAAATTG 58.328 43.478 0.00 0.00 0.00 2.32
5484 17166 3.377172 CGGCTGGAATAGAAACCGAAATT 59.623 43.478 0.00 0.00 43.19 1.82
5485 17167 2.943033 CGGCTGGAATAGAAACCGAAAT 59.057 45.455 0.00 0.00 43.19 2.17
5486 17168 2.352388 CGGCTGGAATAGAAACCGAAA 58.648 47.619 0.00 0.00 43.19 3.46
5487 17169 2.010043 GCGGCTGGAATAGAAACCGAA 61.010 52.381 3.02 0.00 43.19 4.30
5488 17170 0.461339 GCGGCTGGAATAGAAACCGA 60.461 55.000 3.02 0.00 43.19 4.69
5489 17171 1.436983 GGCGGCTGGAATAGAAACCG 61.437 60.000 0.00 0.00 43.37 4.44
5490 17172 0.393808 TGGCGGCTGGAATAGAAACC 60.394 55.000 11.43 0.00 0.00 3.27
5491 17173 0.733150 GTGGCGGCTGGAATAGAAAC 59.267 55.000 11.43 0.00 0.00 2.78
5492 17174 0.326595 TGTGGCGGCTGGAATAGAAA 59.673 50.000 11.43 0.00 0.00 2.52
5493 17175 0.107703 CTGTGGCGGCTGGAATAGAA 60.108 55.000 11.43 0.00 0.00 2.10
5494 17176 1.522092 CTGTGGCGGCTGGAATAGA 59.478 57.895 11.43 0.00 0.00 1.98
5495 17177 2.182842 GCTGTGGCGGCTGGAATAG 61.183 63.158 11.43 0.00 32.24 1.73
5496 17178 2.124736 GCTGTGGCGGCTGGAATA 60.125 61.111 11.43 0.00 32.24 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.