Multiple sequence alignment - TraesCS1A01G051700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G051700 chr1A 100.000 3243 0 0 1 3243 33370784 33374026 0.000000e+00 5989
1 TraesCS1A01G051700 chr1A 86.364 528 44 14 404 928 565236304 565236806 4.730000e-153 551
2 TraesCS1A01G051700 chr1D 90.199 755 38 14 1668 2397 34943728 34944471 0.000000e+00 952
3 TraesCS1A01G051700 chr1D 95.122 533 20 4 2702 3232 34944898 34945426 0.000000e+00 835
4 TraesCS1A01G051700 chr1D 81.609 870 72 35 87 923 34942222 34943036 9.810000e-180 640
5 TraesCS1A01G051700 chr1D 88.847 529 48 7 919 1440 34943117 34943641 9.810000e-180 640
6 TraesCS1A01G051700 chr1D 92.130 216 12 4 929 1139 211216081 211215866 1.890000e-77 300
7 TraesCS1A01G051700 chr1D 94.444 72 3 1 2489 2560 34944525 34944595 3.420000e-20 110
8 TraesCS1A01G051700 chr1B 88.466 789 58 12 1658 2420 53248036 53248817 0.000000e+00 922
9 TraesCS1A01G051700 chr1B 94.347 513 28 1 2679 3191 53249171 53249682 0.000000e+00 785
10 TraesCS1A01G051700 chr1B 87.755 539 35 9 929 1440 53247425 53247959 4.630000e-168 601
11 TraesCS1A01G051700 chr6A 86.174 528 45 14 404 928 596280453 596280955 2.200000e-151 545
12 TraesCS1A01G051700 chr5B 86.174 528 45 16 404 928 253037760 253037258 2.200000e-151 545
13 TraesCS1A01G051700 chr5B 85.795 528 47 14 404 928 335977114 335976612 4.760000e-148 534
14 TraesCS1A01G051700 chr3B 86.174 528 45 14 404 928 806385230 806384728 2.200000e-151 545
15 TraesCS1A01G051700 chr3B 85.822 529 46 16 404 928 220473261 220472758 4.760000e-148 534
16 TraesCS1A01G051700 chr3B 85.606 528 48 14 404 928 219134943 219134441 2.220000e-146 529
17 TraesCS1A01G051700 chr2B 85.606 528 48 14 404 928 545922515 545923017 2.220000e-146 529
18 TraesCS1A01G051700 chr2B 93.750 160 9 1 981 1139 216213419 216213578 4.180000e-59 239
19 TraesCS1A01G051700 chr6B 94.330 194 9 2 947 1139 501361066 501360874 2.450000e-76 296
20 TraesCS1A01G051700 chr7D 91.667 216 13 4 929 1139 569720964 569720749 8.800000e-76 294
21 TraesCS1A01G051700 chr4D 90.610 213 15 4 932 1139 189518467 189518679 8.860000e-71 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G051700 chr1A 33370784 33374026 3242 False 5989.000000 5989 100.000000 1 3243 1 chr1A.!!$F1 3242
1 TraesCS1A01G051700 chr1A 565236304 565236806 502 False 551.000000 551 86.364000 404 928 1 chr1A.!!$F2 524
2 TraesCS1A01G051700 chr1D 34942222 34945426 3204 False 635.400000 952 90.044200 87 3232 5 chr1D.!!$F1 3145
3 TraesCS1A01G051700 chr1B 53247425 53249682 2257 False 769.333333 922 90.189333 929 3191 3 chr1B.!!$F1 2262
4 TraesCS1A01G051700 chr6A 596280453 596280955 502 False 545.000000 545 86.174000 404 928 1 chr6A.!!$F1 524
5 TraesCS1A01G051700 chr5B 253037258 253037760 502 True 545.000000 545 86.174000 404 928 1 chr5B.!!$R1 524
6 TraesCS1A01G051700 chr5B 335976612 335977114 502 True 534.000000 534 85.795000 404 928 1 chr5B.!!$R2 524
7 TraesCS1A01G051700 chr3B 806384728 806385230 502 True 545.000000 545 86.174000 404 928 1 chr3B.!!$R3 524
8 TraesCS1A01G051700 chr3B 220472758 220473261 503 True 534.000000 534 85.822000 404 928 1 chr3B.!!$R2 524
9 TraesCS1A01G051700 chr3B 219134441 219134943 502 True 529.000000 529 85.606000 404 928 1 chr3B.!!$R1 524
10 TraesCS1A01G051700 chr2B 545922515 545923017 502 False 529.000000 529 85.606000 404 928 1 chr2B.!!$F2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.026027 CTTCAGCTTCGCAGAATCGC 59.974 55.0 0.0 0.0 45.9 4.58 F
509 542 0.108138 CCCGCAAAGTCTCTCCGATT 60.108 55.0 0.0 0.0 0.0 3.34 F
1547 1766 0.040157 GCGCTGCATCTTCAACAACA 60.040 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1764 0.036388 ACGAGACCGAAATGGCATGT 60.036 50.0 0.00 0.0 43.94 3.21 R
1709 1929 0.107945 TGCAGCGCATACCACACATA 60.108 50.0 11.47 0.0 31.71 2.29 R
2628 3046 0.178967 TCTGGAAATGGCCTGCACAA 60.179 50.0 3.32 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.893398 ACGGAGGAGAACGCCATC 59.107 61.111 0.00 0.00 39.29 3.51
18 19 1.982395 ACGGAGGAGAACGCCATCA 60.982 57.895 0.00 0.00 39.29 3.07
19 20 1.330655 ACGGAGGAGAACGCCATCAT 61.331 55.000 0.00 0.00 39.29 2.45
20 21 0.598680 CGGAGGAGAACGCCATCATC 60.599 60.000 0.00 0.00 39.29 2.92
21 22 0.250081 GGAGGAGAACGCCATCATCC 60.250 60.000 0.18 0.18 39.02 3.51
22 23 0.465705 GAGGAGAACGCCATCATCCA 59.534 55.000 0.00 0.00 32.21 3.41
23 24 1.071385 GAGGAGAACGCCATCATCCAT 59.929 52.381 0.00 0.00 32.21 3.41
24 25 1.071385 AGGAGAACGCCATCATCCATC 59.929 52.381 0.00 0.00 32.21 3.51
25 26 1.517242 GAGAACGCCATCATCCATCC 58.483 55.000 0.00 0.00 0.00 3.51
26 27 0.839277 AGAACGCCATCATCCATCCA 59.161 50.000 0.00 0.00 0.00 3.41
27 28 1.202734 AGAACGCCATCATCCATCCAG 60.203 52.381 0.00 0.00 0.00 3.86
28 29 0.839277 AACGCCATCATCCATCCAGA 59.161 50.000 0.00 0.00 0.00 3.86
29 30 1.062364 ACGCCATCATCCATCCAGAT 58.938 50.000 0.00 0.00 0.00 2.90
30 31 1.002888 ACGCCATCATCCATCCAGATC 59.997 52.381 0.00 0.00 0.00 2.75
31 32 1.735386 GCCATCATCCATCCAGATCG 58.265 55.000 0.00 0.00 0.00 3.69
32 33 1.678123 GCCATCATCCATCCAGATCGG 60.678 57.143 0.00 0.00 0.00 4.18
33 34 1.678123 CCATCATCCATCCAGATCGGC 60.678 57.143 0.00 0.00 33.14 5.54
34 35 0.617413 ATCATCCATCCAGATCGGCC 59.383 55.000 0.00 0.00 33.14 6.13
35 36 0.472543 TCATCCATCCAGATCGGCCT 60.473 55.000 0.00 0.00 33.14 5.19
36 37 0.036577 CATCCATCCAGATCGGCCTC 60.037 60.000 0.00 0.00 33.14 4.70
37 38 0.178909 ATCCATCCAGATCGGCCTCT 60.179 55.000 0.00 0.00 33.14 3.69
38 39 0.399091 TCCATCCAGATCGGCCTCTT 60.399 55.000 0.00 0.00 33.14 2.85
39 40 0.034616 CCATCCAGATCGGCCTCTTC 59.965 60.000 0.00 0.00 33.14 2.87
40 41 1.047002 CATCCAGATCGGCCTCTTCT 58.953 55.000 0.00 0.00 33.14 2.85
41 42 1.415659 CATCCAGATCGGCCTCTTCTT 59.584 52.381 0.00 0.00 33.14 2.52
42 43 1.115467 TCCAGATCGGCCTCTTCTTC 58.885 55.000 0.00 0.00 33.14 2.87
43 44 1.118838 CCAGATCGGCCTCTTCTTCT 58.881 55.000 0.00 0.00 0.00 2.85
44 45 1.484240 CCAGATCGGCCTCTTCTTCTT 59.516 52.381 0.00 0.00 0.00 2.52
45 46 2.482839 CCAGATCGGCCTCTTCTTCTTC 60.483 54.545 0.00 0.00 0.00 2.87
46 47 2.167281 CAGATCGGCCTCTTCTTCTTCA 59.833 50.000 0.00 0.00 0.00 3.02
47 48 2.430332 AGATCGGCCTCTTCTTCTTCAG 59.570 50.000 0.00 0.00 0.00 3.02
48 49 0.247736 TCGGCCTCTTCTTCTTCAGC 59.752 55.000 0.00 0.00 0.00 4.26
49 50 0.248843 CGGCCTCTTCTTCTTCAGCT 59.751 55.000 0.00 0.00 0.00 4.24
50 51 1.338579 CGGCCTCTTCTTCTTCAGCTT 60.339 52.381 0.00 0.00 0.00 3.74
51 52 2.355197 GGCCTCTTCTTCTTCAGCTTC 58.645 52.381 0.00 0.00 0.00 3.86
52 53 1.999024 GCCTCTTCTTCTTCAGCTTCG 59.001 52.381 0.00 0.00 0.00 3.79
53 54 1.999024 CCTCTTCTTCTTCAGCTTCGC 59.001 52.381 0.00 0.00 0.00 4.70
54 55 2.611473 CCTCTTCTTCTTCAGCTTCGCA 60.611 50.000 0.00 0.00 0.00 5.10
55 56 2.667481 CTCTTCTTCTTCAGCTTCGCAG 59.333 50.000 0.00 0.00 0.00 5.18
56 57 2.297315 TCTTCTTCTTCAGCTTCGCAGA 59.703 45.455 0.00 0.00 0.00 4.26
57 58 2.820059 TCTTCTTCAGCTTCGCAGAA 57.180 45.000 0.00 0.00 45.90 3.02
58 59 3.325293 TCTTCTTCAGCTTCGCAGAAT 57.675 42.857 0.00 0.00 45.90 2.40
59 60 3.257393 TCTTCTTCAGCTTCGCAGAATC 58.743 45.455 0.00 0.00 45.90 2.52
60 61 1.633561 TCTTCAGCTTCGCAGAATCG 58.366 50.000 0.00 0.00 45.90 3.34
61 62 0.026027 CTTCAGCTTCGCAGAATCGC 59.974 55.000 0.00 0.00 45.90 4.58
62 63 0.670239 TTCAGCTTCGCAGAATCGCA 60.670 50.000 0.00 0.00 45.90 5.10
63 64 1.080435 TCAGCTTCGCAGAATCGCAG 61.080 55.000 0.00 0.00 45.90 5.18
64 65 1.080435 CAGCTTCGCAGAATCGCAGA 61.080 55.000 0.00 0.00 45.90 4.26
65 66 0.179089 AGCTTCGCAGAATCGCAGAT 60.179 50.000 0.00 0.00 45.90 2.90
66 67 0.231790 GCTTCGCAGAATCGCAGATC 59.768 55.000 0.00 0.00 45.90 2.75
67 68 1.850377 CTTCGCAGAATCGCAGATCT 58.150 50.000 0.00 0.00 45.90 2.75
68 69 2.200067 CTTCGCAGAATCGCAGATCTT 58.800 47.619 0.00 0.00 45.90 2.40
69 70 1.845266 TCGCAGAATCGCAGATCTTC 58.155 50.000 0.00 0.00 45.12 2.87
70 71 1.406898 TCGCAGAATCGCAGATCTTCT 59.593 47.619 0.00 0.00 45.12 2.85
71 72 1.786004 CGCAGAATCGCAGATCTTCTC 59.214 52.381 0.00 0.00 45.12 2.87
72 73 2.134346 GCAGAATCGCAGATCTTCTCC 58.866 52.381 0.00 0.00 45.12 3.71
73 74 2.224018 GCAGAATCGCAGATCTTCTCCT 60.224 50.000 0.00 0.00 45.12 3.69
74 75 3.641648 CAGAATCGCAGATCTTCTCCTC 58.358 50.000 0.00 0.00 45.12 3.71
75 76 3.318839 CAGAATCGCAGATCTTCTCCTCT 59.681 47.826 0.00 0.00 45.12 3.69
76 77 4.518590 CAGAATCGCAGATCTTCTCCTCTA 59.481 45.833 0.00 0.00 45.12 2.43
77 78 4.761739 AGAATCGCAGATCTTCTCCTCTAG 59.238 45.833 0.00 0.00 45.12 2.43
78 79 2.857483 TCGCAGATCTTCTCCTCTAGG 58.143 52.381 0.00 0.00 0.00 3.02
79 80 2.173782 TCGCAGATCTTCTCCTCTAGGT 59.826 50.000 0.00 0.00 36.34 3.08
80 81 3.391626 TCGCAGATCTTCTCCTCTAGGTA 59.608 47.826 0.00 0.00 36.34 3.08
81 82 4.042311 TCGCAGATCTTCTCCTCTAGGTAT 59.958 45.833 0.00 0.00 36.34 2.73
82 83 4.155826 CGCAGATCTTCTCCTCTAGGTATG 59.844 50.000 0.00 0.00 36.34 2.39
83 84 4.082245 GCAGATCTTCTCCTCTAGGTATGC 60.082 50.000 0.00 0.00 36.34 3.14
84 85 4.155826 CAGATCTTCTCCTCTAGGTATGCG 59.844 50.000 0.00 0.00 36.34 4.73
85 86 2.231529 TCTTCTCCTCTAGGTATGCGC 58.768 52.381 0.00 0.00 36.34 6.09
95 96 1.301009 GGTATGCGCCTCCTACAGC 60.301 63.158 4.18 0.00 0.00 4.40
141 142 1.590932 TCCGAGTAGTAGATCGTGGC 58.409 55.000 4.51 0.00 37.23 5.01
145 146 3.428452 CCGAGTAGTAGATCGTGGCAAAA 60.428 47.826 0.00 0.00 37.23 2.44
146 147 4.171005 CGAGTAGTAGATCGTGGCAAAAA 58.829 43.478 0.00 0.00 34.30 1.94
147 148 4.804139 CGAGTAGTAGATCGTGGCAAAAAT 59.196 41.667 0.00 0.00 34.30 1.82
148 149 5.975344 CGAGTAGTAGATCGTGGCAAAAATA 59.025 40.000 0.00 0.00 34.30 1.40
149 150 6.474427 CGAGTAGTAGATCGTGGCAAAAATAA 59.526 38.462 0.00 0.00 34.30 1.40
150 151 7.009815 CGAGTAGTAGATCGTGGCAAAAATAAA 59.990 37.037 0.00 0.00 34.30 1.40
156 157 9.016623 GTAGATCGTGGCAAAAATAAATTTACC 57.983 33.333 0.00 0.00 0.00 2.85
195 196 3.698029 TTTTGCTTGCTCTGTTCTGTC 57.302 42.857 0.00 0.00 0.00 3.51
201 202 3.209410 CTTGCTCTGTTCTGTCCTGTTT 58.791 45.455 0.00 0.00 0.00 2.83
205 206 2.797156 CTCTGTTCTGTCCTGTTTGACG 59.203 50.000 0.00 0.00 38.11 4.35
206 207 1.867233 CTGTTCTGTCCTGTTTGACGG 59.133 52.381 0.00 0.00 41.98 4.79
207 208 0.586802 GTTCTGTCCTGTTTGACGGC 59.413 55.000 0.00 0.00 40.69 5.68
224 225 1.264749 GGCCTGGGTGGGGATTTTTC 61.265 60.000 0.00 0.00 36.00 2.29
226 227 0.116143 CCTGGGTGGGGATTTTTCCA 59.884 55.000 0.00 0.00 0.00 3.53
227 228 1.484065 CCTGGGTGGGGATTTTTCCAA 60.484 52.381 0.00 0.00 34.47 3.53
228 229 1.901833 CTGGGTGGGGATTTTTCCAAG 59.098 52.381 0.00 0.00 34.47 3.61
230 231 1.899814 GGGTGGGGATTTTTCCAAGTC 59.100 52.381 0.00 0.00 34.47 3.01
231 232 1.544246 GGTGGGGATTTTTCCAAGTCG 59.456 52.381 0.00 0.00 34.47 4.18
232 233 2.510613 GTGGGGATTTTTCCAAGTCGA 58.489 47.619 0.00 0.00 34.47 4.20
233 234 2.488153 GTGGGGATTTTTCCAAGTCGAG 59.512 50.000 0.00 0.00 34.47 4.04
235 236 1.472878 GGGATTTTTCCAAGTCGAGGC 59.527 52.381 0.00 0.00 0.00 4.70
236 237 1.472878 GGATTTTTCCAAGTCGAGGCC 59.527 52.381 0.00 0.00 0.00 5.19
237 238 1.130561 GATTTTTCCAAGTCGAGGCCG 59.869 52.381 0.00 0.00 37.07 6.13
238 239 0.179040 TTTTTCCAAGTCGAGGCCGT 60.179 50.000 0.00 0.00 37.05 5.68
267 274 1.436983 GATCGGTCACGGATTTGGCC 61.437 60.000 0.00 0.00 41.39 5.36
284 291 2.281070 CCCGCGGGATCTGGATTG 60.281 66.667 41.82 7.45 37.50 2.67
285 292 2.281070 CCGCGGGATCTGGATTGG 60.281 66.667 20.10 0.00 0.00 3.16
309 316 1.658114 GTTGCCGTGAGAAAACCCC 59.342 57.895 0.00 0.00 0.00 4.95
310 317 0.822121 GTTGCCGTGAGAAAACCCCT 60.822 55.000 0.00 0.00 0.00 4.79
311 318 0.821711 TTGCCGTGAGAAAACCCCTG 60.822 55.000 0.00 0.00 0.00 4.45
313 320 1.515521 GCCGTGAGAAAACCCCTGTG 61.516 60.000 0.00 0.00 0.00 3.66
340 355 1.828331 GCGCCCGAATTAGCCGTTAG 61.828 60.000 0.00 0.00 0.00 2.34
347 362 2.347452 CGAATTAGCCGTTAGTGTGTGG 59.653 50.000 0.00 0.00 0.00 4.17
364 379 2.190578 GGAAGTCATGCCCGAGGG 59.809 66.667 3.22 3.22 38.57 4.30
365 380 2.670148 GGAAGTCATGCCCGAGGGT 61.670 63.158 10.26 0.00 37.65 4.34
383 398 1.463444 GGTTTTCGTCAGTTGGATCGG 59.537 52.381 0.00 0.00 0.00 4.18
384 399 2.140717 GTTTTCGTCAGTTGGATCGGT 58.859 47.619 0.00 0.00 0.00 4.69
394 409 2.892425 GGATCGGTGCGGCTCTTG 60.892 66.667 0.00 0.00 0.00 3.02
398 413 2.650813 ATCGGTGCGGCTCTTGATCC 62.651 60.000 0.00 0.00 0.00 3.36
401 416 1.442526 GGTGCGGCTCTTGATCCATG 61.443 60.000 0.00 0.00 0.00 3.66
407 438 3.743521 CGGCTCTTGATCCATGGATTAA 58.256 45.455 27.93 26.65 34.60 1.40
412 443 6.002704 GCTCTTGATCCATGGATTAATCAGT 58.997 40.000 27.00 6.17 34.60 3.41
424 455 4.095483 GGATTAATCAGTGCTGTTGTGGAG 59.905 45.833 17.07 0.00 0.00 3.86
428 459 0.947244 CAGTGCTGTTGTGGAGTTCC 59.053 55.000 0.00 0.00 0.00 3.62
476 508 0.674895 CTACTCCACTTGCACTGGGC 60.675 60.000 9.32 0.00 45.13 5.36
509 542 0.108138 CCCGCAAAGTCTCTCCGATT 60.108 55.000 0.00 0.00 0.00 3.34
510 543 1.002366 CCGCAAAGTCTCTCCGATTG 58.998 55.000 0.00 0.00 0.00 2.67
511 544 0.371645 CGCAAAGTCTCTCCGATTGC 59.628 55.000 0.00 0.00 42.13 3.56
512 545 0.371645 GCAAAGTCTCTCCGATTGCG 59.628 55.000 0.00 0.00 37.27 4.85
513 546 1.996292 CAAAGTCTCTCCGATTGCGA 58.004 50.000 0.00 0.00 40.82 5.10
514 547 2.544685 CAAAGTCTCTCCGATTGCGAT 58.455 47.619 0.00 0.00 40.82 4.58
515 548 2.932614 CAAAGTCTCTCCGATTGCGATT 59.067 45.455 0.00 0.00 40.82 3.34
516 549 2.215907 AGTCTCTCCGATTGCGATTG 57.784 50.000 0.00 0.00 40.82 2.67
517 550 1.202463 AGTCTCTCCGATTGCGATTGG 60.202 52.381 13.68 13.68 40.82 3.16
533 566 7.197071 TGCGATTGGTGGTTAATAATCATAC 57.803 36.000 0.00 0.00 31.56 2.39
557 590 4.415596 TGTATGCCCTTCCTTCATGTTTT 58.584 39.130 0.00 0.00 0.00 2.43
558 591 3.967332 ATGCCCTTCCTTCATGTTTTG 57.033 42.857 0.00 0.00 0.00 2.44
559 592 2.956132 TGCCCTTCCTTCATGTTTTGA 58.044 42.857 0.00 0.00 0.00 2.69
561 594 3.903090 TGCCCTTCCTTCATGTTTTGATT 59.097 39.130 0.00 0.00 33.34 2.57
562 595 5.083122 TGCCCTTCCTTCATGTTTTGATTA 58.917 37.500 0.00 0.00 33.34 1.75
563 596 5.185635 TGCCCTTCCTTCATGTTTTGATTAG 59.814 40.000 0.00 0.00 33.34 1.73
564 597 5.654497 CCCTTCCTTCATGTTTTGATTAGC 58.346 41.667 0.00 0.00 33.34 3.09
565 598 5.185635 CCCTTCCTTCATGTTTTGATTAGCA 59.814 40.000 0.00 0.00 33.34 3.49
566 599 6.095377 CCTTCCTTCATGTTTTGATTAGCAC 58.905 40.000 0.00 0.00 33.34 4.40
567 600 6.294675 CCTTCCTTCATGTTTTGATTAGCACA 60.295 38.462 0.00 0.00 33.34 4.57
568 601 6.839124 TCCTTCATGTTTTGATTAGCACAT 57.161 33.333 0.00 0.00 33.34 3.21
569 602 6.855836 TCCTTCATGTTTTGATTAGCACATC 58.144 36.000 0.00 0.00 33.34 3.06
570 603 6.660521 TCCTTCATGTTTTGATTAGCACATCT 59.339 34.615 0.00 0.00 33.34 2.90
590 623 1.986698 GCACATGCATGTTTCACCTC 58.013 50.000 29.48 9.05 39.39 3.85
605 638 8.134202 TGTTTCACCTCTCTTGTATGAATAGA 57.866 34.615 0.00 0.00 0.00 1.98
639 673 0.390209 GCACATGGACATGGTTTGGC 60.390 55.000 15.94 7.93 42.91 4.52
717 751 4.662278 TGCTGCCCTGTTTATTTTAGTCT 58.338 39.130 0.00 0.00 0.00 3.24
759 793 1.958205 ACGCAGCACTCACTCAAGC 60.958 57.895 0.00 0.00 0.00 4.01
764 798 2.287373 GCAGCACTCACTCAAGCATATC 59.713 50.000 0.00 0.00 0.00 1.63
794 828 4.045636 ACCAAGTCAAATGTTCTGTTGC 57.954 40.909 0.00 0.00 0.00 4.17
851 885 0.321210 TCAATGTGGTGGTGCTACCG 60.321 55.000 0.41 0.00 42.58 4.02
858 892 4.715130 TGGTGCTACCGGCCCTCT 62.715 66.667 0.00 0.00 42.58 3.69
874 908 4.510571 GCCCTCTAACCGACAAGAAAATA 58.489 43.478 0.00 0.00 0.00 1.40
875 909 4.331992 GCCCTCTAACCGACAAGAAAATAC 59.668 45.833 0.00 0.00 0.00 1.89
876 910 5.484715 CCCTCTAACCGACAAGAAAATACA 58.515 41.667 0.00 0.00 0.00 2.29
880 914 8.818057 CCTCTAACCGACAAGAAAATACATTAG 58.182 37.037 0.00 0.00 0.00 1.73
882 916 6.811253 AACCGACAAGAAAATACATTAGCA 57.189 33.333 0.00 0.00 0.00 3.49
883 917 6.811253 ACCGACAAGAAAATACATTAGCAA 57.189 33.333 0.00 0.00 0.00 3.91
884 918 6.608610 ACCGACAAGAAAATACATTAGCAAC 58.391 36.000 0.00 0.00 0.00 4.17
885 919 6.430000 ACCGACAAGAAAATACATTAGCAACT 59.570 34.615 0.00 0.00 0.00 3.16
886 920 6.742718 CCGACAAGAAAATACATTAGCAACTG 59.257 38.462 0.00 0.00 0.00 3.16
887 921 7.298122 CGACAAGAAAATACATTAGCAACTGT 58.702 34.615 0.00 0.00 0.00 3.55
904 938 6.430925 AGCAACTGTTACATACATCACATGTT 59.569 34.615 0.00 0.00 41.63 2.71
905 939 7.040478 AGCAACTGTTACATACATCACATGTTT 60.040 33.333 0.00 0.00 41.63 2.83
906 940 8.233868 GCAACTGTTACATACATCACATGTTTA 58.766 33.333 0.00 0.00 41.63 2.01
913 948 6.798482 ACATACATCACATGTTTAATGGCAG 58.202 36.000 14.09 7.65 41.63 4.85
917 952 5.477984 ACATCACATGTTTAATGGCAGTTCT 59.522 36.000 14.09 0.00 41.63 3.01
945 1069 5.163774 GCCTAAAGACAGCAAGATTTCTCTG 60.164 44.000 0.00 0.00 0.00 3.35
953 1077 4.867047 CAGCAAGATTTCTCTGTCACGTAT 59.133 41.667 0.00 0.00 0.00 3.06
987 1116 6.402983 GCCTAATCATGATATGTGCAGTTAGC 60.403 42.308 9.04 0.00 45.96 3.09
1236 1387 1.026182 TCTCCAACATCATGCACGGC 61.026 55.000 0.00 0.00 0.00 5.68
1266 1417 0.394762 CTCATGGTGGTGGTCATGGG 60.395 60.000 0.00 0.00 40.63 4.00
1267 1418 1.139498 TCATGGTGGTGGTCATGGGT 61.139 55.000 0.00 0.00 40.63 4.51
1268 1419 0.623194 CATGGTGGTGGTCATGGGTA 59.377 55.000 0.00 0.00 37.63 3.69
1269 1420 0.623723 ATGGTGGTGGTCATGGGTAC 59.376 55.000 0.00 0.00 0.00 3.34
1286 1437 2.268920 CCCGTCTGGTGGTCATGG 59.731 66.667 0.00 0.00 0.00 3.66
1287 1438 2.268920 CCGTCTGGTGGTCATGGG 59.731 66.667 0.00 0.00 0.00 4.00
1308 1459 3.009275 CCATCTGGTGGCCATGGA 58.991 61.111 18.40 11.47 42.12 3.41
1314 1465 1.308657 TGGTGGCCATGGATACCCT 60.309 57.895 26.12 0.00 32.20 4.34
1350 1519 2.049627 CTCCTCAGCATGGCTACCCC 62.050 65.000 0.00 0.00 36.40 4.95
1398 1567 2.437897 CATGGCTATCCCCCTGCC 59.562 66.667 0.00 0.00 46.26 4.85
1416 1585 2.832498 GGCTACCCTGGCTCATCC 59.168 66.667 0.00 0.00 0.00 3.51
1422 1591 1.372683 CCCTGGCTCATCCGGTATG 59.627 63.158 0.00 4.35 39.73 2.39
1425 1594 1.691976 CCTGGCTCATCCGGTATGTAA 59.308 52.381 0.00 0.00 39.73 2.41
1427 1596 1.414919 TGGCTCATCCGGTATGTAACC 59.585 52.381 0.00 8.13 45.77 2.85
1445 1614 8.943594 ATGTAACCTTCCTTTGTTTTATACCA 57.056 30.769 0.00 0.00 0.00 3.25
1446 1615 8.943594 TGTAACCTTCCTTTGTTTTATACCAT 57.056 30.769 0.00 0.00 0.00 3.55
1448 1617 9.850628 GTAACCTTCCTTTGTTTTATACCATTC 57.149 33.333 0.00 0.00 0.00 2.67
1449 1618 7.476540 ACCTTCCTTTGTTTTATACCATTCC 57.523 36.000 0.00 0.00 0.00 3.01
1450 1619 7.246027 ACCTTCCTTTGTTTTATACCATTCCT 58.754 34.615 0.00 0.00 0.00 3.36
1451 1620 7.178451 ACCTTCCTTTGTTTTATACCATTCCTG 59.822 37.037 0.00 0.00 0.00 3.86
1452 1621 7.178451 CCTTCCTTTGTTTTATACCATTCCTGT 59.822 37.037 0.00 0.00 0.00 4.00
1454 1623 7.891561 TCCTTTGTTTTATACCATTCCTGTTG 58.108 34.615 0.00 0.00 0.00 3.33
1457 1626 6.827586 TGTTTTATACCATTCCTGTTGGAC 57.172 37.500 0.00 0.00 43.06 4.02
1458 1627 6.548321 TGTTTTATACCATTCCTGTTGGACT 58.452 36.000 0.00 0.00 43.06 3.85
1459 1628 6.657541 TGTTTTATACCATTCCTGTTGGACTC 59.342 38.462 0.00 0.00 43.06 3.36
1460 1629 3.933861 ATACCATTCCTGTTGGACTCC 57.066 47.619 0.00 0.00 43.06 3.85
1461 1630 1.444933 ACCATTCCTGTTGGACTCCA 58.555 50.000 0.00 0.00 43.06 3.86
1462 1631 1.995542 ACCATTCCTGTTGGACTCCAT 59.004 47.619 0.00 0.00 43.06 3.41
1463 1632 3.189606 ACCATTCCTGTTGGACTCCATA 58.810 45.455 0.00 0.00 43.06 2.74
1464 1633 3.591527 ACCATTCCTGTTGGACTCCATAA 59.408 43.478 0.00 0.00 43.06 1.90
1465 1634 4.044065 ACCATTCCTGTTGGACTCCATAAA 59.956 41.667 0.00 0.00 43.06 1.40
1466 1635 5.203528 CCATTCCTGTTGGACTCCATAAAT 58.796 41.667 0.00 0.00 43.06 1.40
1470 1639 4.019174 CCTGTTGGACTCCATAAATTGCT 58.981 43.478 0.00 0.00 31.53 3.91
1472 1641 5.066505 CCTGTTGGACTCCATAAATTGCTAC 59.933 44.000 0.00 0.00 31.53 3.58
1473 1642 4.947388 TGTTGGACTCCATAAATTGCTACC 59.053 41.667 0.00 0.00 31.53 3.18
1474 1643 4.853468 TGGACTCCATAAATTGCTACCA 57.147 40.909 0.00 0.00 0.00 3.25
1475 1644 5.387113 TGGACTCCATAAATTGCTACCAT 57.613 39.130 0.00 0.00 0.00 3.55
1476 1645 5.765510 TGGACTCCATAAATTGCTACCATT 58.234 37.500 0.00 0.00 0.00 3.16
1478 1647 6.096705 TGGACTCCATAAATTGCTACCATTTG 59.903 38.462 0.00 0.00 0.00 2.32
1479 1648 5.906073 ACTCCATAAATTGCTACCATTTGC 58.094 37.500 0.00 0.00 0.00 3.68
1480 1649 5.421693 ACTCCATAAATTGCTACCATTTGCA 59.578 36.000 0.00 0.00 37.42 4.08
1481 1650 5.659463 TCCATAAATTGCTACCATTTGCAC 58.341 37.500 0.00 0.00 39.05 4.57
1482 1651 5.421693 TCCATAAATTGCTACCATTTGCACT 59.578 36.000 0.00 0.00 39.05 4.40
1483 1652 6.605194 TCCATAAATTGCTACCATTTGCACTA 59.395 34.615 0.00 0.00 39.05 2.74
1484 1653 6.919662 CCATAAATTGCTACCATTTGCACTAG 59.080 38.462 0.00 0.00 39.05 2.57
1506 1691 9.113838 ACTAGCATTTATATTTCCACAGTTGAG 57.886 33.333 0.00 0.00 0.00 3.02
1513 1698 4.713824 ATTTCCACAGTTGAGATGCATG 57.286 40.909 2.46 0.00 0.00 4.06
1522 1707 5.237996 ACAGTTGAGATGCATGTATATGTGC 59.762 40.000 2.46 5.60 41.61 4.57
1545 1764 2.329244 TGCGCTGCATCTTCAACAA 58.671 47.368 9.73 0.00 31.71 2.83
1547 1766 0.040157 GCGCTGCATCTTCAACAACA 60.040 50.000 0.00 0.00 0.00 3.33
1551 1770 2.602878 CTGCATCTTCAACAACATGCC 58.397 47.619 0.00 0.00 40.86 4.40
1557 1776 3.899734 TCTTCAACAACATGCCATTTCG 58.100 40.909 0.00 0.00 0.00 3.46
1562 1781 1.812571 ACAACATGCCATTTCGGTCTC 59.187 47.619 0.00 0.00 36.97 3.36
1573 1792 5.335426 GCCATTTCGGTCTCGTATATGAGTA 60.335 44.000 19.22 6.06 36.97 2.59
1608 1828 5.794894 TGATGTAAAGAGTCCCAAGTTCTC 58.205 41.667 0.00 0.00 0.00 2.87
1620 1840 5.181433 GTCCCAAGTTCTCTTGTATCAAACC 59.819 44.000 7.11 0.00 46.70 3.27
1621 1841 5.073144 TCCCAAGTTCTCTTGTATCAAACCT 59.927 40.000 7.11 0.00 46.70 3.50
1622 1842 5.412904 CCCAAGTTCTCTTGTATCAAACCTC 59.587 44.000 7.11 0.00 46.70 3.85
1623 1843 5.997746 CCAAGTTCTCTTGTATCAAACCTCA 59.002 40.000 7.11 0.00 46.70 3.86
1624 1844 6.656693 CCAAGTTCTCTTGTATCAAACCTCAT 59.343 38.462 7.11 0.00 46.70 2.90
1625 1845 7.175641 CCAAGTTCTCTTGTATCAAACCTCATT 59.824 37.037 7.11 0.00 46.70 2.57
1626 1846 7.678947 AGTTCTCTTGTATCAAACCTCATTG 57.321 36.000 0.00 0.00 0.00 2.82
1627 1847 7.227156 AGTTCTCTTGTATCAAACCTCATTGT 58.773 34.615 0.00 0.00 0.00 2.71
1628 1848 7.721399 AGTTCTCTTGTATCAAACCTCATTGTT 59.279 33.333 0.00 0.00 0.00 2.83
1629 1849 8.352942 GTTCTCTTGTATCAAACCTCATTGTTT 58.647 33.333 0.00 0.00 38.95 2.83
1630 1850 8.099364 TCTCTTGTATCAAACCTCATTGTTTC 57.901 34.615 0.00 0.00 36.33 2.78
1631 1851 7.939039 TCTCTTGTATCAAACCTCATTGTTTCT 59.061 33.333 0.00 0.00 36.33 2.52
1632 1852 8.099364 TCTTGTATCAAACCTCATTGTTTCTC 57.901 34.615 0.00 0.00 36.33 2.87
1633 1853 7.719193 TCTTGTATCAAACCTCATTGTTTCTCA 59.281 33.333 0.00 0.00 36.33 3.27
1634 1854 7.439157 TGTATCAAACCTCATTGTTTCTCAG 57.561 36.000 0.00 0.00 36.33 3.35
1635 1855 5.972107 ATCAAACCTCATTGTTTCTCAGG 57.028 39.130 0.00 0.00 36.33 3.86
1636 1856 4.792068 TCAAACCTCATTGTTTCTCAGGT 58.208 39.130 0.00 0.00 36.33 4.00
1637 1857 5.200483 TCAAACCTCATTGTTTCTCAGGTT 58.800 37.500 0.00 0.00 36.33 3.50
1638 1858 5.067674 TCAAACCTCATTGTTTCTCAGGTTG 59.932 40.000 2.47 0.00 38.08 3.77
1639 1859 4.170468 ACCTCATTGTTTCTCAGGTTGT 57.830 40.909 0.00 0.00 0.00 3.32
1640 1860 5.304686 ACCTCATTGTTTCTCAGGTTGTA 57.695 39.130 0.00 0.00 0.00 2.41
1641 1861 5.880901 ACCTCATTGTTTCTCAGGTTGTAT 58.119 37.500 0.00 0.00 0.00 2.29
1642 1862 5.707298 ACCTCATTGTTTCTCAGGTTGTATG 59.293 40.000 0.00 0.00 0.00 2.39
1643 1863 5.707298 CCTCATTGTTTCTCAGGTTGTATGT 59.293 40.000 0.00 0.00 0.00 2.29
1644 1864 6.348786 CCTCATTGTTTCTCAGGTTGTATGTG 60.349 42.308 0.00 0.00 0.00 3.21
1645 1865 6.061441 TCATTGTTTCTCAGGTTGTATGTGT 58.939 36.000 0.00 0.00 0.00 3.72
1646 1866 7.220740 TCATTGTTTCTCAGGTTGTATGTGTA 58.779 34.615 0.00 0.00 0.00 2.90
1647 1867 7.387673 TCATTGTTTCTCAGGTTGTATGTGTAG 59.612 37.037 0.00 0.00 0.00 2.74
1648 1868 6.169557 TGTTTCTCAGGTTGTATGTGTAGT 57.830 37.500 0.00 0.00 0.00 2.73
1649 1869 7.292713 TGTTTCTCAGGTTGTATGTGTAGTA 57.707 36.000 0.00 0.00 0.00 1.82
1650 1870 7.903145 TGTTTCTCAGGTTGTATGTGTAGTAT 58.097 34.615 0.00 0.00 0.00 2.12
1651 1871 7.817478 TGTTTCTCAGGTTGTATGTGTAGTATG 59.183 37.037 0.00 0.00 0.00 2.39
1652 1872 5.902681 TCTCAGGTTGTATGTGTAGTATGC 58.097 41.667 0.00 0.00 0.00 3.14
1653 1873 5.420739 TCTCAGGTTGTATGTGTAGTATGCA 59.579 40.000 0.00 0.00 0.00 3.96
1665 1885 5.357742 TGTAGTATGCACTGGATTGATGT 57.642 39.130 0.00 0.00 36.14 3.06
1666 1886 6.478512 TGTAGTATGCACTGGATTGATGTA 57.521 37.500 0.00 0.00 36.14 2.29
1667 1887 6.280643 TGTAGTATGCACTGGATTGATGTAC 58.719 40.000 0.00 0.00 36.14 2.90
1668 1888 5.357742 AGTATGCACTGGATTGATGTACA 57.642 39.130 0.00 0.00 32.25 2.90
1669 1889 5.933617 AGTATGCACTGGATTGATGTACAT 58.066 37.500 8.43 8.43 32.25 2.29
1670 1890 6.359804 AGTATGCACTGGATTGATGTACATT 58.640 36.000 10.30 0.00 32.25 2.71
1671 1891 6.830324 AGTATGCACTGGATTGATGTACATTT 59.170 34.615 10.30 0.00 32.25 2.32
1672 1892 7.992608 AGTATGCACTGGATTGATGTACATTTA 59.007 33.333 10.30 1.50 32.25 1.40
1673 1893 7.828508 ATGCACTGGATTGATGTACATTTAT 57.171 32.000 10.30 6.58 0.00 1.40
1674 1894 8.922931 ATGCACTGGATTGATGTACATTTATA 57.077 30.769 10.30 0.00 0.00 0.98
1675 1895 8.922931 TGCACTGGATTGATGTACATTTATAT 57.077 30.769 10.30 1.59 0.00 0.86
1676 1896 8.785946 TGCACTGGATTGATGTACATTTATATG 58.214 33.333 10.30 3.36 37.79 1.78
1677 1897 8.786898 GCACTGGATTGATGTACATTTATATGT 58.213 33.333 10.30 4.19 46.49 2.29
1679 1899 9.851686 ACTGGATTGATGTACATTTATATGTGT 57.148 29.630 10.30 1.51 44.56 3.72
1688 1908 8.192068 TGTACATTTATATGTGTAGTGTGTGC 57.808 34.615 8.85 0.00 44.56 4.57
1689 1909 8.038351 TGTACATTTATATGTGTAGTGTGTGCT 58.962 33.333 8.85 0.00 44.56 4.40
1690 1910 7.921786 ACATTTATATGTGTAGTGTGTGCTT 57.078 32.000 0.00 0.00 43.29 3.91
1691 1911 7.751732 ACATTTATATGTGTAGTGTGTGCTTG 58.248 34.615 0.00 0.00 43.29 4.01
1692 1912 7.606073 ACATTTATATGTGTAGTGTGTGCTTGA 59.394 33.333 0.00 0.00 43.29 3.02
1693 1913 8.615211 CATTTATATGTGTAGTGTGTGCTTGAT 58.385 33.333 0.00 0.00 0.00 2.57
1694 1914 8.560355 TTTATATGTGTAGTGTGTGCTTGATT 57.440 30.769 0.00 0.00 0.00 2.57
1695 1915 4.754372 ATGTGTAGTGTGTGCTTGATTG 57.246 40.909 0.00 0.00 0.00 2.67
1696 1916 3.802866 TGTGTAGTGTGTGCTTGATTGA 58.197 40.909 0.00 0.00 0.00 2.57
1697 1917 4.388485 TGTGTAGTGTGTGCTTGATTGAT 58.612 39.130 0.00 0.00 0.00 2.57
1698 1918 5.546526 TGTGTAGTGTGTGCTTGATTGATA 58.453 37.500 0.00 0.00 0.00 2.15
1699 1919 6.172630 TGTGTAGTGTGTGCTTGATTGATAT 58.827 36.000 0.00 0.00 0.00 1.63
1700 1920 6.313658 TGTGTAGTGTGTGCTTGATTGATATC 59.686 38.462 0.00 0.00 0.00 1.63
1701 1921 5.817296 TGTAGTGTGTGCTTGATTGATATCC 59.183 40.000 0.00 0.00 0.00 2.59
1702 1922 4.847198 AGTGTGTGCTTGATTGATATCCA 58.153 39.130 0.00 0.00 0.00 3.41
1703 1923 5.443283 AGTGTGTGCTTGATTGATATCCAT 58.557 37.500 0.00 0.00 0.00 3.41
1704 1924 5.889853 AGTGTGTGCTTGATTGATATCCATT 59.110 36.000 0.00 0.00 0.00 3.16
1705 1925 6.379133 AGTGTGTGCTTGATTGATATCCATTT 59.621 34.615 0.00 0.00 0.00 2.32
1706 1926 7.557358 AGTGTGTGCTTGATTGATATCCATTTA 59.443 33.333 0.00 0.00 0.00 1.40
1707 1927 8.355169 GTGTGTGCTTGATTGATATCCATTTAT 58.645 33.333 0.00 0.00 0.00 1.40
1708 1928 9.571816 TGTGTGCTTGATTGATATCCATTTATA 57.428 29.630 0.00 0.00 0.00 0.98
1723 1943 7.841915 TCCATTTATATATGTGTGGTATGCG 57.158 36.000 0.00 0.00 0.00 4.73
1724 1944 6.315144 TCCATTTATATATGTGTGGTATGCGC 59.685 38.462 0.00 0.00 0.00 6.09
1725 1945 6.316140 CCATTTATATATGTGTGGTATGCGCT 59.684 38.462 9.73 0.00 0.00 5.92
1726 1946 6.720012 TTTATATATGTGTGGTATGCGCTG 57.280 37.500 9.73 0.00 0.00 5.18
1727 1947 1.229428 ATATGTGTGGTATGCGCTGC 58.771 50.000 9.73 0.00 0.00 5.25
1728 1948 0.107945 TATGTGTGGTATGCGCTGCA 60.108 50.000 9.73 5.73 44.86 4.41
1742 1962 5.038247 TGCGCTGCATCTTCAATAATATG 57.962 39.130 9.73 0.00 31.71 1.78
1743 1963 3.850273 GCGCTGCATCTTCAATAATATGC 59.150 43.478 0.00 0.00 42.54 3.14
1744 1964 4.409570 CGCTGCATCTTCAATAATATGCC 58.590 43.478 0.00 0.00 41.90 4.40
1745 1965 4.083164 CGCTGCATCTTCAATAATATGCCA 60.083 41.667 0.00 0.00 41.90 4.92
1746 1966 5.563280 CGCTGCATCTTCAATAATATGCCAA 60.563 40.000 0.00 0.00 41.90 4.52
1747 1967 5.862323 GCTGCATCTTCAATAATATGCCAAG 59.138 40.000 0.00 0.00 41.90 3.61
1748 1968 6.516194 GCTGCATCTTCAATAATATGCCAAGT 60.516 38.462 0.00 0.00 41.90 3.16
1749 1969 7.350744 TGCATCTTCAATAATATGCCAAGTT 57.649 32.000 0.00 0.00 41.90 2.66
1750 1970 7.428020 TGCATCTTCAATAATATGCCAAGTTC 58.572 34.615 0.00 0.00 41.90 3.01
1751 1971 6.865205 GCATCTTCAATAATATGCCAAGTTCC 59.135 38.462 0.00 0.00 38.57 3.62
1752 1972 7.470424 GCATCTTCAATAATATGCCAAGTTCCA 60.470 37.037 0.00 0.00 38.57 3.53
1753 1973 8.582437 CATCTTCAATAATATGCCAAGTTCCAT 58.418 33.333 0.00 0.00 0.00 3.41
1754 1974 8.169977 TCTTCAATAATATGCCAAGTTCCATC 57.830 34.615 0.00 0.00 0.00 3.51
1755 1975 8.000709 TCTTCAATAATATGCCAAGTTCCATCT 58.999 33.333 0.00 0.00 0.00 2.90
1756 1976 7.750229 TCAATAATATGCCAAGTTCCATCTC 57.250 36.000 0.00 0.00 0.00 2.75
1757 1977 7.289310 TCAATAATATGCCAAGTTCCATCTCA 58.711 34.615 0.00 0.00 0.00 3.27
1758 1978 7.446319 TCAATAATATGCCAAGTTCCATCTCAG 59.554 37.037 0.00 0.00 0.00 3.35
1759 1979 2.431954 ATGCCAAGTTCCATCTCAGG 57.568 50.000 0.00 0.00 0.00 3.86
1760 1980 1.361204 TGCCAAGTTCCATCTCAGGA 58.639 50.000 0.00 0.00 35.41 3.86
1761 1981 1.918262 TGCCAAGTTCCATCTCAGGAT 59.082 47.619 0.00 0.00 37.56 3.24
1762 1982 3.114606 TGCCAAGTTCCATCTCAGGATA 58.885 45.455 0.00 0.00 37.56 2.59
1763 1983 3.118261 TGCCAAGTTCCATCTCAGGATAC 60.118 47.826 0.00 0.00 37.56 2.24
1764 1984 3.722147 CCAAGTTCCATCTCAGGATACG 58.278 50.000 0.00 0.00 46.39 3.06
1765 1985 3.384789 CCAAGTTCCATCTCAGGATACGA 59.615 47.826 0.00 0.00 46.39 3.43
1766 1986 4.500545 CCAAGTTCCATCTCAGGATACGAG 60.501 50.000 0.00 0.00 46.39 4.18
1767 1987 3.904717 AGTTCCATCTCAGGATACGAGT 58.095 45.455 0.00 0.00 46.39 4.18
1768 1988 5.050126 AGTTCCATCTCAGGATACGAGTA 57.950 43.478 0.00 0.00 46.39 2.59
1769 1989 5.067273 AGTTCCATCTCAGGATACGAGTAG 58.933 45.833 0.00 0.00 46.39 2.57
1770 1990 4.708576 TCCATCTCAGGATACGAGTAGT 57.291 45.455 0.00 0.00 46.39 2.73
1771 1991 4.390264 TCCATCTCAGGATACGAGTAGTG 58.610 47.826 0.00 0.00 46.39 2.74
1772 1992 3.504134 CCATCTCAGGATACGAGTAGTGG 59.496 52.174 0.00 0.00 46.39 4.00
1773 1993 3.928005 TCTCAGGATACGAGTAGTGGT 57.072 47.619 0.00 0.00 46.39 4.16
1774 1994 4.232188 TCTCAGGATACGAGTAGTGGTT 57.768 45.455 0.00 0.00 46.39 3.67
1775 1995 4.597004 TCTCAGGATACGAGTAGTGGTTT 58.403 43.478 0.00 0.00 46.39 3.27
1776 1996 5.748402 TCTCAGGATACGAGTAGTGGTTTA 58.252 41.667 0.00 0.00 46.39 2.01
1777 1997 6.363065 TCTCAGGATACGAGTAGTGGTTTAT 58.637 40.000 0.00 0.00 46.39 1.40
1778 1998 7.512130 TCTCAGGATACGAGTAGTGGTTTATA 58.488 38.462 0.00 0.00 46.39 0.98
1779 1999 7.994911 TCTCAGGATACGAGTAGTGGTTTATAA 59.005 37.037 0.00 0.00 46.39 0.98
1780 2000 8.523915 TCAGGATACGAGTAGTGGTTTATAAA 57.476 34.615 0.00 0.00 46.39 1.40
1781 2001 8.970020 TCAGGATACGAGTAGTGGTTTATAAAA 58.030 33.333 0.00 0.00 46.39 1.52
1782 2002 9.760077 CAGGATACGAGTAGTGGTTTATAAAAT 57.240 33.333 0.00 0.00 46.39 1.82
1783 2003 9.978044 AGGATACGAGTAGTGGTTTATAAAATC 57.022 33.333 0.00 0.00 46.39 2.17
1784 2004 9.978044 GGATACGAGTAGTGGTTTATAAAATCT 57.022 33.333 0.00 2.05 0.00 2.40
1788 2008 8.932791 ACGAGTAGTGGTTTATAAAATCTGTTG 58.067 33.333 0.00 0.00 0.00 3.33
1789 2009 8.932791 CGAGTAGTGGTTTATAAAATCTGTTGT 58.067 33.333 0.00 0.00 0.00 3.32
1805 2025 6.699895 TCTGTTGTATCAAACGTGTATCAC 57.300 37.500 0.00 0.00 32.47 3.06
1810 2030 6.944557 TGTATCAAACGTGTATCACTCTTG 57.055 37.500 0.00 0.00 31.34 3.02
1838 2058 3.499918 CCATCCTCATCGGCTATTGTTTC 59.500 47.826 0.00 0.00 0.00 2.78
1940 2161 1.927895 CCTACGGAGCACACAAGATC 58.072 55.000 0.00 0.00 0.00 2.75
1950 2171 0.969149 ACACAAGATCTCTCACGGCA 59.031 50.000 0.00 0.00 0.00 5.69
2138 2359 5.948992 AGTTCAAGAAGTGGAAGTAATGC 57.051 39.130 0.00 0.00 0.00 3.56
2139 2360 4.452455 AGTTCAAGAAGTGGAAGTAATGCG 59.548 41.667 0.00 0.00 0.00 4.73
2140 2361 2.742053 TCAAGAAGTGGAAGTAATGCGC 59.258 45.455 0.00 0.00 0.00 6.09
2141 2362 1.359848 AGAAGTGGAAGTAATGCGCG 58.640 50.000 0.00 0.00 34.67 6.86
2262 2486 3.643320 TGAGATGTATCTAAGCAGGGTGG 59.357 47.826 0.00 0.00 37.25 4.61
2263 2487 3.643792 GAGATGTATCTAAGCAGGGTGGT 59.356 47.826 0.00 0.00 37.25 4.16
2271 2495 2.594592 GCAGGGTGGTGTGTGGTC 60.595 66.667 0.00 0.00 0.00 4.02
2374 2603 8.492673 TTGCTAATAAGTACCTGAATTCTGTG 57.507 34.615 7.05 3.53 0.00 3.66
2378 2607 3.059352 AGTACCTGAATTCTGTGTGGC 57.941 47.619 7.05 5.15 0.00 5.01
2380 2609 0.606401 ACCTGAATTCTGTGTGGCGG 60.606 55.000 7.05 0.00 0.00 6.13
2395 2624 0.107361 GGCGGTATGCTTACCCTGTT 60.107 55.000 20.07 0.00 44.45 3.16
2399 2628 2.167693 CGGTATGCTTACCCTGTTCTGA 59.832 50.000 20.07 0.00 44.45 3.27
2405 2634 2.636830 CTTACCCTGTTCTGATGCTGG 58.363 52.381 0.00 0.00 0.00 4.85
2410 2639 2.014857 CCTGTTCTGATGCTGGTCATG 58.985 52.381 0.00 0.00 35.05 3.07
2420 2649 0.235665 GCTGGTCATGTGTCGTTGTG 59.764 55.000 0.00 0.00 0.00 3.33
2446 2694 4.180057 TGAATTGGTGTTGTGTTTGCTTC 58.820 39.130 0.00 0.00 0.00 3.86
2457 2705 2.520500 TTGCTTCGCTGGGGCAAA 60.521 55.556 6.05 0.00 41.96 3.68
2458 2706 2.130426 TTGCTTCGCTGGGGCAAAA 61.130 52.632 6.05 0.00 41.96 2.44
2462 2710 0.318120 CTTCGCTGGGGCAAAATTGT 59.682 50.000 0.00 0.00 38.60 2.71
2464 2712 0.033228 TCGCTGGGGCAAAATTGTTG 59.967 50.000 0.00 0.00 38.60 3.33
2483 2733 0.883833 GCTCCTGACCAAACATGTGG 59.116 55.000 0.00 0.00 44.92 4.17
2486 2736 1.039068 CCTGACCAAACATGTGGCAA 58.961 50.000 0.00 0.00 43.00 4.52
2551 2801 3.745458 CGGGCAAGCAACATTTTGTAAAT 59.255 39.130 0.00 0.00 34.90 1.40
2560 2810 5.178067 GCAACATTTTGTAAATTGCTGCTCT 59.822 36.000 15.06 0.00 41.88 4.09
2561 2811 6.586751 CAACATTTTGTAAATTGCTGCTCTG 58.413 36.000 0.00 0.00 0.00 3.35
2567 2976 6.721571 TTGTAAATTGCTGCTCTGTAGTAC 57.278 37.500 0.00 0.00 0.00 2.73
2599 3008 2.038557 ACGCACTGTCAATTTCCCTAGT 59.961 45.455 0.00 0.00 0.00 2.57
2602 3011 2.416547 CACTGTCAATTTCCCTAGTGCG 59.583 50.000 0.00 0.00 30.59 5.34
2603 3012 2.301870 ACTGTCAATTTCCCTAGTGCGA 59.698 45.455 0.00 0.00 0.00 5.10
2604 3013 3.244422 ACTGTCAATTTCCCTAGTGCGAA 60.244 43.478 0.00 0.00 0.00 4.70
2605 3014 3.941483 CTGTCAATTTCCCTAGTGCGAAT 59.059 43.478 0.00 0.00 0.00 3.34
2607 3016 3.065371 GTCAATTTCCCTAGTGCGAATGG 59.935 47.826 0.00 0.00 0.00 3.16
2632 3050 3.955429 CGACTCGCTGGAAATTGTG 57.045 52.632 0.00 0.00 0.00 3.33
2636 3054 0.169672 CTCGCTGGAAATTGTGCAGG 59.830 55.000 0.00 0.00 45.47 4.85
2640 3058 0.899720 CTGGAAATTGTGCAGGCCAT 59.100 50.000 5.01 0.00 41.81 4.40
2642 3060 1.698532 TGGAAATTGTGCAGGCCATTT 59.301 42.857 5.01 0.00 0.00 2.32
2643 3061 2.289569 TGGAAATTGTGCAGGCCATTTC 60.290 45.455 5.01 10.40 0.00 2.17
2644 3062 2.349590 GAAATTGTGCAGGCCATTTCC 58.650 47.619 5.01 0.00 0.00 3.13
2645 3063 1.350071 AATTGTGCAGGCCATTTCCA 58.650 45.000 5.01 0.00 0.00 3.53
2646 3064 0.899720 ATTGTGCAGGCCATTTCCAG 59.100 50.000 5.01 0.00 0.00 3.86
2648 3066 0.178967 TGTGCAGGCCATTTCCAGAA 60.179 50.000 5.01 0.00 0.00 3.02
2649 3067 1.188863 GTGCAGGCCATTTCCAGAAT 58.811 50.000 5.01 0.00 0.00 2.40
2650 3068 2.291475 TGTGCAGGCCATTTCCAGAATA 60.291 45.455 5.01 0.00 0.00 1.75
2652 3070 1.339291 GCAGGCCATTTCCAGAATAGC 59.661 52.381 5.01 0.00 0.00 2.97
2656 3074 2.291741 GGCCATTTCCAGAATAGCTTCG 59.708 50.000 0.00 0.00 36.45 3.79
2657 3075 2.291741 GCCATTTCCAGAATAGCTTCGG 59.708 50.000 0.00 0.00 36.45 4.30
2658 3076 2.880890 CCATTTCCAGAATAGCTTCGGG 59.119 50.000 0.00 0.00 45.14 5.14
2661 3079 1.414158 TCCAGAATAGCTTCGGGAGG 58.586 55.000 3.43 0.00 46.65 4.30
2662 3080 1.063190 TCCAGAATAGCTTCGGGAGGA 60.063 52.381 3.43 0.00 46.65 3.71
2664 3082 3.165875 CCAGAATAGCTTCGGGAGGATA 58.834 50.000 0.00 0.00 46.26 2.59
2665 3083 3.772025 CCAGAATAGCTTCGGGAGGATAT 59.228 47.826 0.00 0.00 46.26 1.63
2666 3084 4.382470 CCAGAATAGCTTCGGGAGGATATG 60.382 50.000 0.00 0.00 46.26 1.78
2667 3085 4.464244 CAGAATAGCTTCGGGAGGATATGA 59.536 45.833 0.00 0.00 36.45 2.15
2671 3089 3.448934 AGCTTCGGGAGGATATGATGAT 58.551 45.455 0.00 0.00 0.00 2.45
2672 3090 4.614475 AGCTTCGGGAGGATATGATGATA 58.386 43.478 0.00 0.00 0.00 2.15
2675 3093 7.015680 AGCTTCGGGAGGATATGATGATATAT 58.984 38.462 0.00 0.00 0.00 0.86
2682 3127 9.482627 GGGAGGATATGATGATATATTCGTTTC 57.517 37.037 0.00 0.00 0.00 2.78
2695 3140 4.955925 ATTCGTTTCATAAATGTCGCCA 57.044 36.364 0.00 0.00 0.00 5.69
2697 3142 4.750952 TCGTTTCATAAATGTCGCCAAA 57.249 36.364 0.00 0.00 0.00 3.28
2739 3184 3.435327 CCAGAATTGACGGACGAAATTCA 59.565 43.478 24.51 8.68 40.95 2.57
2831 3277 3.807553 TCATCACACAGAAAACAGAGCA 58.192 40.909 0.00 0.00 0.00 4.26
2833 3279 1.942657 TCACACAGAAAACAGAGCAGC 59.057 47.619 0.00 0.00 0.00 5.25
2849 3295 1.376424 AGCTGCTTGTCCGGTCATG 60.376 57.895 1.21 6.21 0.00 3.07
2900 3346 1.428912 TGGAAGGCCTTGGTGAAGAAT 59.571 47.619 26.25 0.00 34.31 2.40
3175 3621 1.079503 GTCTCCACCTGCGATGAAAC 58.920 55.000 0.00 0.00 0.00 2.78
3177 3623 1.361668 CTCCACCTGCGATGAAACGG 61.362 60.000 0.00 0.00 0.00 4.44
3206 3652 1.444553 GAAGCGTCACCTGGAGTCG 60.445 63.158 0.00 3.18 0.00 4.18
3210 3656 0.802607 GCGTCACCTGGAGTCGATTC 60.803 60.000 13.88 0.00 0.00 2.52
3219 3666 4.223923 ACCTGGAGTCGATTCTCTGAATTT 59.776 41.667 7.92 0.00 35.11 1.82
3234 3681 8.634335 TCTCTGAATTTGTGATGAAAATACCA 57.366 30.769 0.00 0.00 0.00 3.25
3235 3682 9.076781 TCTCTGAATTTGTGATGAAAATACCAA 57.923 29.630 0.00 0.00 0.00 3.67
3236 3683 9.350357 CTCTGAATTTGTGATGAAAATACCAAG 57.650 33.333 0.00 0.00 0.00 3.61
3237 3684 8.859090 TCTGAATTTGTGATGAAAATACCAAGT 58.141 29.630 0.00 0.00 0.00 3.16
3238 3685 9.480053 CTGAATTTGTGATGAAAATACCAAGTT 57.520 29.630 0.00 0.00 0.00 2.66
3239 3686 9.474920 TGAATTTGTGATGAAAATACCAAGTTC 57.525 29.630 0.00 0.00 0.00 3.01
3240 3687 9.474920 GAATTTGTGATGAAAATACCAAGTTCA 57.525 29.630 0.00 0.00 35.83 3.18
3241 3688 9.480053 AATTTGTGATGAAAATACCAAGTTCAG 57.520 29.630 0.00 0.00 34.91 3.02
3242 3689 7.815840 TTGTGATGAAAATACCAAGTTCAGA 57.184 32.000 0.00 0.00 34.91 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.330655 ATGATGGCGTTCTCCTCCGT 61.331 55.000 0.00 0.00 0.00 4.69
1 2 0.598680 GATGATGGCGTTCTCCTCCG 60.599 60.000 0.00 0.00 0.00 4.63
2 3 0.250081 GGATGATGGCGTTCTCCTCC 60.250 60.000 2.23 0.00 0.00 4.30
3 4 0.465705 TGGATGATGGCGTTCTCCTC 59.534 55.000 9.18 0.00 0.00 3.71
4 5 1.071385 GATGGATGATGGCGTTCTCCT 59.929 52.381 9.18 0.00 0.00 3.69
5 6 1.517242 GATGGATGATGGCGTTCTCC 58.483 55.000 2.44 2.44 0.00 3.71
6 7 1.202687 TGGATGGATGATGGCGTTCTC 60.203 52.381 0.00 0.00 0.00 2.87
7 8 0.839277 TGGATGGATGATGGCGTTCT 59.161 50.000 0.00 0.00 0.00 3.01
8 9 1.202687 TCTGGATGGATGATGGCGTTC 60.203 52.381 0.00 0.00 0.00 3.95
9 10 0.839277 TCTGGATGGATGATGGCGTT 59.161 50.000 0.00 0.00 0.00 4.84
10 11 1.002888 GATCTGGATGGATGATGGCGT 59.997 52.381 0.00 0.00 0.00 5.68
11 12 1.735386 GATCTGGATGGATGATGGCG 58.265 55.000 0.00 0.00 0.00 5.69
12 13 1.678123 CCGATCTGGATGGATGATGGC 60.678 57.143 0.00 0.00 42.00 4.40
13 14 1.678123 GCCGATCTGGATGGATGATGG 60.678 57.143 7.64 0.00 42.00 3.51
14 15 1.678123 GGCCGATCTGGATGGATGATG 60.678 57.143 7.64 0.00 42.00 3.07
15 16 0.617413 GGCCGATCTGGATGGATGAT 59.383 55.000 7.64 0.00 42.00 2.45
16 17 0.472543 AGGCCGATCTGGATGGATGA 60.473 55.000 0.00 0.00 42.00 2.92
17 18 0.036577 GAGGCCGATCTGGATGGATG 60.037 60.000 0.00 0.00 42.00 3.51
18 19 0.178909 AGAGGCCGATCTGGATGGAT 60.179 55.000 0.00 0.00 42.00 3.41
19 20 0.399091 AAGAGGCCGATCTGGATGGA 60.399 55.000 0.00 0.00 42.00 3.41
20 21 0.034616 GAAGAGGCCGATCTGGATGG 59.965 60.000 0.00 0.00 42.00 3.51
21 22 1.047002 AGAAGAGGCCGATCTGGATG 58.953 55.000 7.12 0.00 42.00 3.51
22 23 1.691434 GAAGAAGAGGCCGATCTGGAT 59.309 52.381 8.48 0.00 42.00 3.41
23 24 1.115467 GAAGAAGAGGCCGATCTGGA 58.885 55.000 8.48 0.00 42.00 3.86
24 25 1.118838 AGAAGAAGAGGCCGATCTGG 58.881 55.000 8.48 0.00 42.50 3.86
25 26 2.167281 TGAAGAAGAAGAGGCCGATCTG 59.833 50.000 8.48 0.00 0.00 2.90
26 27 2.430332 CTGAAGAAGAAGAGGCCGATCT 59.570 50.000 0.00 0.00 0.00 2.75
27 28 2.820330 CTGAAGAAGAAGAGGCCGATC 58.180 52.381 0.00 0.00 0.00 3.69
28 29 1.134551 GCTGAAGAAGAAGAGGCCGAT 60.135 52.381 0.00 0.00 0.00 4.18
29 30 0.247736 GCTGAAGAAGAAGAGGCCGA 59.752 55.000 0.00 0.00 0.00 5.54
30 31 0.248843 AGCTGAAGAAGAAGAGGCCG 59.751 55.000 0.00 0.00 0.00 6.13
31 32 2.355197 GAAGCTGAAGAAGAAGAGGCC 58.645 52.381 0.00 0.00 0.00 5.19
32 33 1.999024 CGAAGCTGAAGAAGAAGAGGC 59.001 52.381 0.00 0.00 0.00 4.70
48 49 1.850377 AGATCTGCGATTCTGCGAAG 58.150 50.000 0.00 0.00 38.30 3.79
49 50 2.159184 AGAAGATCTGCGATTCTGCGAA 60.159 45.455 0.00 0.00 37.81 4.70
50 51 1.406898 AGAAGATCTGCGATTCTGCGA 59.593 47.619 0.00 0.00 37.81 5.10
51 52 1.786004 GAGAAGATCTGCGATTCTGCG 59.214 52.381 0.00 0.00 37.81 5.18
52 53 2.134346 GGAGAAGATCTGCGATTCTGC 58.866 52.381 0.00 0.00 34.86 4.26
53 54 3.318839 AGAGGAGAAGATCTGCGATTCTG 59.681 47.826 0.00 0.00 40.01 3.02
54 55 3.565307 AGAGGAGAAGATCTGCGATTCT 58.435 45.455 0.00 0.00 40.01 2.40
55 56 4.082787 CCTAGAGGAGAAGATCTGCGATTC 60.083 50.000 0.00 0.00 40.01 2.52
56 57 3.826157 CCTAGAGGAGAAGATCTGCGATT 59.174 47.826 0.00 0.00 40.01 3.34
57 58 3.181434 ACCTAGAGGAGAAGATCTGCGAT 60.181 47.826 1.60 0.00 40.01 4.58
58 59 2.173782 ACCTAGAGGAGAAGATCTGCGA 59.826 50.000 1.60 0.00 40.01 5.10
59 60 2.582052 ACCTAGAGGAGAAGATCTGCG 58.418 52.381 1.60 0.00 40.01 5.18
60 61 4.082245 GCATACCTAGAGGAGAAGATCTGC 60.082 50.000 1.60 0.00 38.94 4.26
61 62 4.155826 CGCATACCTAGAGGAGAAGATCTG 59.844 50.000 1.60 0.00 38.94 2.90
62 63 4.331968 CGCATACCTAGAGGAGAAGATCT 58.668 47.826 1.60 0.00 38.94 2.75
63 64 3.119637 GCGCATACCTAGAGGAGAAGATC 60.120 52.174 0.30 0.00 38.94 2.75
64 65 2.823154 GCGCATACCTAGAGGAGAAGAT 59.177 50.000 0.30 0.00 38.94 2.40
65 66 2.231529 GCGCATACCTAGAGGAGAAGA 58.768 52.381 0.30 0.00 38.94 2.87
66 67 1.271102 GGCGCATACCTAGAGGAGAAG 59.729 57.143 10.83 0.00 38.94 2.85
67 68 1.133450 AGGCGCATACCTAGAGGAGAA 60.133 52.381 10.83 0.00 38.67 2.87
68 69 0.478942 AGGCGCATACCTAGAGGAGA 59.521 55.000 10.83 0.00 38.67 3.71
69 70 0.885196 GAGGCGCATACCTAGAGGAG 59.115 60.000 10.83 0.00 41.32 3.69
70 71 0.539901 GGAGGCGCATACCTAGAGGA 60.540 60.000 10.83 0.00 41.32 3.71
71 72 0.540830 AGGAGGCGCATACCTAGAGG 60.541 60.000 10.83 0.00 41.32 3.69
72 73 1.813786 GTAGGAGGCGCATACCTAGAG 59.186 57.143 20.92 0.00 41.32 2.43
73 74 1.144298 TGTAGGAGGCGCATACCTAGA 59.856 52.381 20.92 18.20 41.32 2.43
74 75 1.542030 CTGTAGGAGGCGCATACCTAG 59.458 57.143 20.92 12.17 41.32 3.02
75 76 1.617322 CTGTAGGAGGCGCATACCTA 58.383 55.000 10.83 15.49 41.32 3.08
76 77 1.749334 GCTGTAGGAGGCGCATACCT 61.749 60.000 19.65 19.65 45.04 3.08
77 78 1.301009 GCTGTAGGAGGCGCATACC 60.301 63.158 10.83 9.32 32.96 2.73
78 79 1.301009 GGCTGTAGGAGGCGCATAC 60.301 63.158 10.83 1.19 37.53 2.39
79 80 3.138625 GGCTGTAGGAGGCGCATA 58.861 61.111 10.83 0.00 37.53 3.14
84 85 4.537433 CGCAGGGCTGTAGGAGGC 62.537 72.222 0.00 0.00 46.83 4.70
85 86 1.690219 ATTCGCAGGGCTGTAGGAGG 61.690 60.000 0.00 0.00 0.00 4.30
120 121 2.031857 GCCACGATCTACTACTCGGAAG 60.032 54.545 0.00 0.00 39.16 3.46
121 122 1.945394 GCCACGATCTACTACTCGGAA 59.055 52.381 0.00 0.00 39.16 4.30
141 142 6.532988 TCCCCTCCGGTAAATTTATTTTTG 57.467 37.500 0.00 0.00 0.00 2.44
145 146 7.743116 AAAAATCCCCTCCGGTAAATTTATT 57.257 32.000 0.00 0.00 0.00 1.40
176 177 1.949525 GGACAGAACAGAGCAAGCAAA 59.050 47.619 0.00 0.00 0.00 3.68
177 178 1.141657 AGGACAGAACAGAGCAAGCAA 59.858 47.619 0.00 0.00 0.00 3.91
179 180 1.155042 CAGGACAGAACAGAGCAAGC 58.845 55.000 0.00 0.00 0.00 4.01
180 181 2.540265 ACAGGACAGAACAGAGCAAG 57.460 50.000 0.00 0.00 0.00 4.01
181 182 2.945008 CAAACAGGACAGAACAGAGCAA 59.055 45.455 0.00 0.00 0.00 3.91
182 183 2.170397 TCAAACAGGACAGAACAGAGCA 59.830 45.455 0.00 0.00 0.00 4.26
183 184 2.545946 GTCAAACAGGACAGAACAGAGC 59.454 50.000 0.00 0.00 37.73 4.09
184 185 2.797156 CGTCAAACAGGACAGAACAGAG 59.203 50.000 0.00 0.00 37.66 3.35
185 186 2.483013 CCGTCAAACAGGACAGAACAGA 60.483 50.000 0.00 0.00 37.66 3.41
186 187 1.867233 CCGTCAAACAGGACAGAACAG 59.133 52.381 0.00 0.00 37.66 3.16
187 188 1.948104 CCGTCAAACAGGACAGAACA 58.052 50.000 0.00 0.00 37.66 3.18
188 189 0.586802 GCCGTCAAACAGGACAGAAC 59.413 55.000 0.00 0.00 37.66 3.01
189 190 0.534203 GGCCGTCAAACAGGACAGAA 60.534 55.000 0.00 0.00 37.66 3.02
190 191 1.070786 GGCCGTCAAACAGGACAGA 59.929 57.895 0.00 0.00 37.66 3.41
191 192 1.071471 AGGCCGTCAAACAGGACAG 59.929 57.895 0.00 0.00 38.23 3.51
192 193 1.227823 CAGGCCGTCAAACAGGACA 60.228 57.895 0.00 0.00 38.23 4.02
193 194 1.966451 CCAGGCCGTCAAACAGGAC 60.966 63.158 0.00 0.00 35.21 3.85
194 195 2.429930 CCAGGCCGTCAAACAGGA 59.570 61.111 0.00 0.00 0.00 3.86
195 196 2.672996 CCCAGGCCGTCAAACAGG 60.673 66.667 0.00 0.00 0.00 4.00
205 206 1.229496 AAAAATCCCCACCCAGGCC 60.229 57.895 0.00 0.00 35.39 5.19
206 207 1.264749 GGAAAAATCCCCACCCAGGC 61.265 60.000 0.00 0.00 35.39 4.85
207 208 0.116143 TGGAAAAATCCCCACCCAGG 59.884 55.000 0.00 0.00 37.03 4.45
224 225 2.725203 TTTCCACGGCCTCGACTTGG 62.725 60.000 0.00 0.00 40.11 3.61
226 227 1.004918 CTTTCCACGGCCTCGACTT 60.005 57.895 0.00 0.00 40.11 3.01
227 228 2.657237 CTTTCCACGGCCTCGACT 59.343 61.111 0.00 0.00 40.11 4.18
228 229 2.434359 CCTTTCCACGGCCTCGAC 60.434 66.667 0.00 0.00 40.11 4.20
230 231 4.778143 CCCCTTTCCACGGCCTCG 62.778 72.222 0.00 0.00 43.02 4.63
231 232 4.426313 CCCCCTTTCCACGGCCTC 62.426 72.222 0.00 0.00 0.00 4.70
232 233 4.995058 TCCCCCTTTCCACGGCCT 62.995 66.667 0.00 0.00 0.00 5.19
233 234 3.716204 GATCCCCCTTTCCACGGCC 62.716 68.421 0.00 0.00 0.00 6.13
235 236 2.189521 CGATCCCCCTTTCCACGG 59.810 66.667 0.00 0.00 0.00 4.94
236 237 2.189521 CCGATCCCCCTTTCCACG 59.810 66.667 0.00 0.00 0.00 4.94
237 238 1.223763 GACCGATCCCCCTTTCCAC 59.776 63.158 0.00 0.00 0.00 4.02
238 239 1.229690 TGACCGATCCCCCTTTCCA 60.230 57.895 0.00 0.00 0.00 3.53
267 274 2.281070 CAATCCAGATCCCGCGGG 60.281 66.667 39.13 39.13 0.00 6.13
272 279 1.152368 CAGCCCCAATCCAGATCCC 59.848 63.158 0.00 0.00 0.00 3.85
327 342 2.676342 CCCACACACTAACGGCTAATTC 59.324 50.000 0.00 0.00 0.00 2.17
340 355 1.244019 GGGCATGACTTCCCACACAC 61.244 60.000 0.00 0.00 42.18 3.82
347 362 2.190578 CCCTCGGGCATGACTTCC 59.809 66.667 0.00 0.00 0.00 3.46
364 379 2.096417 CACCGATCCAACTGACGAAAAC 60.096 50.000 0.00 0.00 0.00 2.43
365 380 2.139917 CACCGATCCAACTGACGAAAA 58.860 47.619 0.00 0.00 0.00 2.29
383 398 1.442526 CCATGGATCAAGAGCCGCAC 61.443 60.000 5.56 0.00 40.42 5.34
384 399 1.153107 CCATGGATCAAGAGCCGCA 60.153 57.895 5.56 0.00 40.42 5.69
394 409 5.068636 ACAGCACTGATTAATCCATGGATC 58.931 41.667 27.45 16.28 33.08 3.36
398 413 5.337554 CACAACAGCACTGATTAATCCATG 58.662 41.667 12.90 11.44 0.00 3.66
401 416 4.009675 TCCACAACAGCACTGATTAATCC 58.990 43.478 12.90 0.00 0.00 3.01
407 438 2.498167 GAACTCCACAACAGCACTGAT 58.502 47.619 4.31 0.00 0.00 2.90
412 443 2.037251 GACTAGGAACTCCACAACAGCA 59.963 50.000 0.00 0.00 41.75 4.41
428 459 3.247173 GCTTTTCGCATCATCCTGACTAG 59.753 47.826 0.00 0.00 38.92 2.57
448 479 4.938226 GTGCAAGTGGAGTAGATTTTAGCT 59.062 41.667 0.00 0.00 0.00 3.32
476 508 1.281656 GCGGGTTTTCTGAACCACG 59.718 57.895 9.86 10.94 42.03 4.94
477 509 0.741915 TTGCGGGTTTTCTGAACCAC 59.258 50.000 9.86 2.54 42.03 4.16
509 542 6.768381 TGTATGATTATTAACCACCAATCGCA 59.232 34.615 0.00 0.00 31.43 5.10
510 543 7.197071 TGTATGATTATTAACCACCAATCGC 57.803 36.000 0.00 0.00 31.43 4.58
511 544 8.783093 ACATGTATGATTATTAACCACCAATCG 58.217 33.333 0.00 0.00 31.43 3.34
515 548 9.008965 GCATACATGTATGATTATTAACCACCA 57.991 33.333 38.21 2.52 44.22 4.17
516 549 8.458843 GGCATACATGTATGATTATTAACCACC 58.541 37.037 38.21 24.48 44.22 4.61
517 550 8.458843 GGGCATACATGTATGATTATTAACCAC 58.541 37.037 38.21 20.48 44.22 4.16
533 566 3.559069 ACATGAAGGAAGGGCATACATG 58.441 45.455 0.00 0.00 39.27 3.21
589 622 6.824553 AGCAGCAATCTATTCATACAAGAGA 58.175 36.000 0.00 0.00 0.00 3.10
590 623 7.012138 ACAAGCAGCAATCTATTCATACAAGAG 59.988 37.037 0.00 0.00 0.00 2.85
605 638 1.619654 TGTGCCTAACAAGCAGCAAT 58.380 45.000 0.00 0.00 41.87 3.56
639 673 5.680594 TCCTCATTCCAATTTCCAAATGG 57.319 39.130 0.00 0.00 31.53 3.16
642 676 5.045724 CCCAATCCTCATTCCAATTTCCAAA 60.046 40.000 0.00 0.00 0.00 3.28
643 677 4.470664 CCCAATCCTCATTCCAATTTCCAA 59.529 41.667 0.00 0.00 0.00 3.53
653 687 2.173569 ACTGCCTACCCAATCCTCATTC 59.826 50.000 0.00 0.00 0.00 2.67
658 692 2.127708 CCTAACTGCCTACCCAATCCT 58.872 52.381 0.00 0.00 0.00 3.24
660 694 1.211949 TGCCTAACTGCCTACCCAATC 59.788 52.381 0.00 0.00 0.00 2.67
717 751 1.911357 AGCAATCAGACATGGTCCTCA 59.089 47.619 0.00 0.00 32.18 3.86
764 798 8.971321 CAGAACATTTGACTTGGTAAAAGAATG 58.029 33.333 0.00 0.00 0.00 2.67
794 828 1.062880 GAGCAGAACTAGTCGTCCTCG 59.937 57.143 0.00 0.00 38.55 4.63
844 878 2.062177 GGTTAGAGGGCCGGTAGCA 61.062 63.158 1.90 0.00 46.50 3.49
845 879 2.820261 GGTTAGAGGGCCGGTAGC 59.180 66.667 1.90 0.00 42.60 3.58
851 885 0.611714 TTCTTGTCGGTTAGAGGGCC 59.388 55.000 0.00 0.00 0.00 5.80
854 888 7.611213 AATGTATTTTCTTGTCGGTTAGAGG 57.389 36.000 0.00 0.00 0.00 3.69
858 892 7.908827 TGCTAATGTATTTTCTTGTCGGTTA 57.091 32.000 0.00 0.00 0.00 2.85
874 908 7.606073 TGTGATGTATGTAACAGTTGCTAATGT 59.394 33.333 2.84 0.00 42.70 2.71
875 909 7.973601 TGTGATGTATGTAACAGTTGCTAATG 58.026 34.615 2.84 0.00 42.70 1.90
876 910 8.615211 CATGTGATGTATGTAACAGTTGCTAAT 58.385 33.333 2.84 0.00 42.70 1.73
880 914 6.182039 ACATGTGATGTATGTAACAGTTGC 57.818 37.500 0.00 0.00 42.70 4.17
884 918 9.720667 CCATTAAACATGTGATGTATGTAACAG 57.279 33.333 0.00 0.00 44.07 3.16
885 919 8.187480 GCCATTAAACATGTGATGTATGTAACA 58.813 33.333 0.00 0.00 44.07 2.41
886 920 8.187480 TGCCATTAAACATGTGATGTATGTAAC 58.813 33.333 0.00 0.00 44.07 2.50
887 921 8.286191 TGCCATTAAACATGTGATGTATGTAA 57.714 30.769 0.00 0.00 44.07 2.41
897 931 6.254157 GCATAAGAACTGCCATTAAACATGTG 59.746 38.462 0.00 0.00 33.44 3.21
913 948 5.643777 TCTTGCTGTCTTTAGGCATAAGAAC 59.356 40.000 8.04 0.00 35.84 3.01
917 952 6.886459 AGAAATCTTGCTGTCTTTAGGCATAA 59.114 34.615 0.00 0.00 35.84 1.90
945 1069 7.690228 TGATTAGGCAAATGTTAATACGTGAC 58.310 34.615 0.00 0.00 0.00 3.67
948 1072 8.445275 TCATGATTAGGCAAATGTTAATACGT 57.555 30.769 0.00 0.00 0.00 3.57
987 1116 2.612760 TCCCATTGCTCTGAGGGAG 58.387 57.895 6.83 0.00 45.15 4.30
1167 1318 1.159905 TCCAGGTGCAGGAGGGTAA 59.840 57.895 0.00 0.00 0.00 2.85
1269 1420 2.268920 CCATGACCACCAGACGGG 59.731 66.667 0.00 0.00 44.81 5.28
1270 1421 1.261938 TACCCATGACCACCAGACGG 61.262 60.000 0.00 0.00 38.77 4.79
1271 1422 0.108329 GTACCCATGACCACCAGACG 60.108 60.000 0.00 0.00 0.00 4.18
1272 1423 0.252197 GGTACCCATGACCACCAGAC 59.748 60.000 0.00 0.00 36.91 3.51
1273 1424 2.691663 GGTACCCATGACCACCAGA 58.308 57.895 0.00 0.00 36.91 3.86
1326 1495 1.147153 GCCATGCTGAGGAGGGTAC 59.853 63.158 6.51 0.00 0.00 3.34
1350 1519 4.862447 TAGCCATGCTGCTGCGGG 62.862 66.667 18.06 18.06 42.77 6.13
1398 1567 2.423446 GATGAGCCAGGGTAGCCG 59.577 66.667 5.06 0.43 0.00 5.52
1422 1591 9.850628 GAATGGTATAAAACAAAGGAAGGTTAC 57.149 33.333 0.00 0.00 0.00 2.50
1425 1594 7.178451 CAGGAATGGTATAAAACAAAGGAAGGT 59.822 37.037 0.00 0.00 0.00 3.50
1427 1596 8.122472 ACAGGAATGGTATAAAACAAAGGAAG 57.878 34.615 0.00 0.00 0.00 3.46
1428 1597 8.364142 CAACAGGAATGGTATAAAACAAAGGAA 58.636 33.333 0.00 0.00 0.00 3.36
1432 1601 7.507616 AGTCCAACAGGAATGGTATAAAACAAA 59.492 33.333 0.00 0.00 39.09 2.83
1440 1609 3.189606 TGGAGTCCAACAGGAATGGTAT 58.810 45.455 10.20 0.00 39.09 2.73
1441 1610 2.626785 TGGAGTCCAACAGGAATGGTA 58.373 47.619 10.20 0.00 39.09 3.25
1443 1612 2.814805 ATGGAGTCCAACAGGAATGG 57.185 50.000 17.71 0.00 36.95 3.16
1444 1613 6.567050 CAATTTATGGAGTCCAACAGGAATG 58.433 40.000 17.71 6.19 36.95 2.67
1445 1614 5.127682 GCAATTTATGGAGTCCAACAGGAAT 59.872 40.000 17.71 9.12 36.95 3.01
1446 1615 4.462483 GCAATTTATGGAGTCCAACAGGAA 59.538 41.667 17.71 7.18 36.95 3.36
1448 1617 4.019174 AGCAATTTATGGAGTCCAACAGG 58.981 43.478 17.71 5.31 36.95 4.00
1449 1618 5.066505 GGTAGCAATTTATGGAGTCCAACAG 59.933 44.000 17.71 4.61 36.95 3.16
1450 1619 4.947388 GGTAGCAATTTATGGAGTCCAACA 59.053 41.667 17.71 4.13 36.95 3.33
1451 1620 4.947388 TGGTAGCAATTTATGGAGTCCAAC 59.053 41.667 17.71 6.12 36.95 3.77
1452 1621 5.186256 TGGTAGCAATTTATGGAGTCCAA 57.814 39.130 17.71 0.00 36.95 3.53
1454 1623 6.507023 CAAATGGTAGCAATTTATGGAGTCC 58.493 40.000 0.73 0.73 0.00 3.85
1457 1626 5.750067 GTGCAAATGGTAGCAATTTATGGAG 59.250 40.000 0.00 0.00 43.20 3.86
1458 1627 5.421693 AGTGCAAATGGTAGCAATTTATGGA 59.578 36.000 0.00 0.00 43.20 3.41
1459 1628 5.663456 AGTGCAAATGGTAGCAATTTATGG 58.337 37.500 0.00 0.00 43.20 2.74
1460 1629 6.418819 GCTAGTGCAAATGGTAGCAATTTATG 59.581 38.462 0.00 0.00 43.20 1.90
1461 1630 6.507023 GCTAGTGCAAATGGTAGCAATTTAT 58.493 36.000 0.00 0.00 43.20 1.40
1462 1631 5.890334 GCTAGTGCAAATGGTAGCAATTTA 58.110 37.500 0.00 0.00 43.20 1.40
1463 1632 4.747810 GCTAGTGCAAATGGTAGCAATTT 58.252 39.130 0.00 0.00 43.20 1.82
1464 1633 4.376340 GCTAGTGCAAATGGTAGCAATT 57.624 40.909 0.00 0.00 43.20 2.32
1478 1647 7.264373 ACTGTGGAAATATAAATGCTAGTGC 57.736 36.000 0.00 0.00 40.20 4.40
1479 1648 8.892723 TCAACTGTGGAAATATAAATGCTAGTG 58.107 33.333 0.00 0.00 0.00 2.74
1480 1649 9.113838 CTCAACTGTGGAAATATAAATGCTAGT 57.886 33.333 0.00 0.00 0.00 2.57
1481 1650 9.330063 TCTCAACTGTGGAAATATAAATGCTAG 57.670 33.333 0.00 0.00 0.00 3.42
1482 1651 9.851686 ATCTCAACTGTGGAAATATAAATGCTA 57.148 29.630 0.00 0.00 0.00 3.49
1483 1652 8.627403 CATCTCAACTGTGGAAATATAAATGCT 58.373 33.333 0.00 0.00 0.00 3.79
1484 1653 7.380602 GCATCTCAACTGTGGAAATATAAATGC 59.619 37.037 0.00 0.00 0.00 3.56
1491 1676 5.255687 ACATGCATCTCAACTGTGGAAATA 58.744 37.500 0.00 0.00 0.00 1.40
1500 1685 5.370679 TGCACATATACATGCATCTCAACT 58.629 37.500 8.34 0.00 46.63 3.16
1501 1686 5.678132 TGCACATATACATGCATCTCAAC 57.322 39.130 8.34 0.00 46.63 3.18
1513 1698 3.120234 TGCAGCGCATAATGCACATATAC 60.120 43.478 16.99 0.00 46.97 1.47
1545 1764 0.036388 ACGAGACCGAAATGGCATGT 60.036 50.000 0.00 0.00 43.94 3.21
1547 1766 2.910688 ATACGAGACCGAAATGGCAT 57.089 45.000 0.00 0.00 43.94 4.40
1551 1770 6.797513 CACTACTCATATACGAGACCGAAATG 59.202 42.308 2.20 0.00 39.50 2.32
1557 1776 6.388435 AAACCACTACTCATATACGAGACC 57.612 41.667 2.20 0.00 36.47 3.85
1573 1792 7.824779 GGACTCTTTACATCAAGATAAACCACT 59.175 37.037 0.00 0.00 32.21 4.00
1608 1828 7.874940 TGAGAAACAATGAGGTTTGATACAAG 58.125 34.615 0.00 0.00 40.85 3.16
1620 1840 6.205464 ACACATACAACCTGAGAAACAATGAG 59.795 38.462 0.00 0.00 0.00 2.90
1621 1841 6.061441 ACACATACAACCTGAGAAACAATGA 58.939 36.000 0.00 0.00 0.00 2.57
1622 1842 6.317789 ACACATACAACCTGAGAAACAATG 57.682 37.500 0.00 0.00 0.00 2.82
1623 1843 7.224297 ACTACACATACAACCTGAGAAACAAT 58.776 34.615 0.00 0.00 0.00 2.71
1624 1844 6.588204 ACTACACATACAACCTGAGAAACAA 58.412 36.000 0.00 0.00 0.00 2.83
1625 1845 6.169557 ACTACACATACAACCTGAGAAACA 57.830 37.500 0.00 0.00 0.00 2.83
1626 1846 7.201530 GCATACTACACATACAACCTGAGAAAC 60.202 40.741 0.00 0.00 0.00 2.78
1627 1847 6.816640 GCATACTACACATACAACCTGAGAAA 59.183 38.462 0.00 0.00 0.00 2.52
1628 1848 6.071051 TGCATACTACACATACAACCTGAGAA 60.071 38.462 0.00 0.00 0.00 2.87
1629 1849 5.420739 TGCATACTACACATACAACCTGAGA 59.579 40.000 0.00 0.00 0.00 3.27
1630 1850 5.520288 GTGCATACTACACATACAACCTGAG 59.480 44.000 0.00 0.00 37.96 3.35
1631 1851 5.186992 AGTGCATACTACACATACAACCTGA 59.813 40.000 0.00 0.00 40.59 3.86
1632 1852 5.291858 CAGTGCATACTACACATACAACCTG 59.708 44.000 0.00 0.00 40.59 4.00
1633 1853 5.419542 CAGTGCATACTACACATACAACCT 58.580 41.667 0.00 0.00 40.59 3.50
1634 1854 4.570772 CCAGTGCATACTACACATACAACC 59.429 45.833 0.00 0.00 40.59 3.77
1635 1855 5.416083 TCCAGTGCATACTACACATACAAC 58.584 41.667 0.00 0.00 40.59 3.32
1636 1856 5.669164 TCCAGTGCATACTACACATACAA 57.331 39.130 0.00 0.00 40.59 2.41
1637 1857 5.869649 ATCCAGTGCATACTACACATACA 57.130 39.130 0.00 0.00 40.59 2.29
1638 1858 6.280643 TCAATCCAGTGCATACTACACATAC 58.719 40.000 0.00 0.00 40.59 2.39
1639 1859 6.478512 TCAATCCAGTGCATACTACACATA 57.521 37.500 0.00 0.00 40.59 2.29
1640 1860 5.357742 TCAATCCAGTGCATACTACACAT 57.642 39.130 0.00 0.00 40.59 3.21
1641 1861 4.817318 TCAATCCAGTGCATACTACACA 57.183 40.909 0.00 0.00 40.59 3.72
1642 1862 5.118990 ACATCAATCCAGTGCATACTACAC 58.881 41.667 0.00 0.00 34.74 2.90
1643 1863 5.357742 ACATCAATCCAGTGCATACTACA 57.642 39.130 0.00 0.00 34.74 2.74
1644 1864 6.280643 TGTACATCAATCCAGTGCATACTAC 58.719 40.000 0.00 0.00 34.74 2.73
1645 1865 6.478512 TGTACATCAATCCAGTGCATACTA 57.521 37.500 0.00 0.00 34.74 1.82
1646 1866 5.357742 TGTACATCAATCCAGTGCATACT 57.642 39.130 0.00 0.00 37.75 2.12
1647 1867 6.624352 AATGTACATCAATCCAGTGCATAC 57.376 37.500 9.23 0.00 37.56 2.39
1648 1868 8.922931 ATAAATGTACATCAATCCAGTGCATA 57.077 30.769 9.23 0.00 37.56 3.14
1649 1869 7.828508 ATAAATGTACATCAATCCAGTGCAT 57.171 32.000 9.23 0.00 39.68 3.96
1650 1870 8.785946 CATATAAATGTACATCAATCCAGTGCA 58.214 33.333 9.23 0.00 32.65 4.57
1651 1871 8.786898 ACATATAAATGTACATCAATCCAGTGC 58.213 33.333 9.23 0.00 44.66 4.40
1653 1873 9.851686 ACACATATAAATGTACATCAATCCAGT 57.148 29.630 9.23 0.73 44.70 4.00
1662 1882 8.826710 GCACACACTACACATATAAATGTACAT 58.173 33.333 1.41 1.41 44.70 2.29
1663 1883 8.038351 AGCACACACTACACATATAAATGTACA 58.962 33.333 0.00 0.00 44.70 2.90
1664 1884 8.420374 AGCACACACTACACATATAAATGTAC 57.580 34.615 0.00 0.00 44.70 2.90
1665 1885 8.878769 CAAGCACACACTACACATATAAATGTA 58.121 33.333 0.00 0.91 44.70 2.29
1667 1887 7.973601 TCAAGCACACACTACACATATAAATG 58.026 34.615 0.00 0.00 39.17 2.32
1668 1888 8.737168 ATCAAGCACACACTACACATATAAAT 57.263 30.769 0.00 0.00 0.00 1.40
1669 1889 8.450180 CAATCAAGCACACACTACACATATAAA 58.550 33.333 0.00 0.00 0.00 1.40
1670 1890 7.821846 TCAATCAAGCACACACTACACATATAA 59.178 33.333 0.00 0.00 0.00 0.98
1671 1891 7.327214 TCAATCAAGCACACACTACACATATA 58.673 34.615 0.00 0.00 0.00 0.86
1672 1892 6.172630 TCAATCAAGCACACACTACACATAT 58.827 36.000 0.00 0.00 0.00 1.78
1673 1893 5.546526 TCAATCAAGCACACACTACACATA 58.453 37.500 0.00 0.00 0.00 2.29
1674 1894 4.388485 TCAATCAAGCACACACTACACAT 58.612 39.130 0.00 0.00 0.00 3.21
1675 1895 3.802866 TCAATCAAGCACACACTACACA 58.197 40.909 0.00 0.00 0.00 3.72
1676 1896 6.238211 GGATATCAATCAAGCACACACTACAC 60.238 42.308 4.83 0.00 33.41 2.90
1677 1897 5.817296 GGATATCAATCAAGCACACACTACA 59.183 40.000 4.83 0.00 33.41 2.74
1678 1898 5.817296 TGGATATCAATCAAGCACACACTAC 59.183 40.000 4.83 0.00 33.41 2.73
1679 1899 5.988287 TGGATATCAATCAAGCACACACTA 58.012 37.500 4.83 0.00 33.41 2.74
1680 1900 4.847198 TGGATATCAATCAAGCACACACT 58.153 39.130 4.83 0.00 33.41 3.55
1681 1901 5.762825 ATGGATATCAATCAAGCACACAC 57.237 39.130 4.83 0.00 33.41 3.82
1682 1902 6.778834 AAATGGATATCAATCAAGCACACA 57.221 33.333 4.83 0.00 33.41 3.72
1697 1917 9.541143 CGCATACCACACATATATAAATGGATA 57.459 33.333 12.87 5.05 0.00 2.59
1698 1918 7.012327 GCGCATACCACACATATATAAATGGAT 59.988 37.037 0.30 3.14 0.00 3.41
1699 1919 6.315144 GCGCATACCACACATATATAAATGGA 59.685 38.462 0.30 1.46 0.00 3.41
1700 1920 6.316140 AGCGCATACCACACATATATAAATGG 59.684 38.462 11.47 6.72 0.00 3.16
1701 1921 7.182089 CAGCGCATACCACACATATATAAATG 58.818 38.462 11.47 0.00 0.00 2.32
1702 1922 6.183360 GCAGCGCATACCACACATATATAAAT 60.183 38.462 11.47 0.00 0.00 1.40
1703 1923 5.121611 GCAGCGCATACCACACATATATAAA 59.878 40.000 11.47 0.00 0.00 1.40
1704 1924 4.629634 GCAGCGCATACCACACATATATAA 59.370 41.667 11.47 0.00 0.00 0.98
1705 1925 4.180817 GCAGCGCATACCACACATATATA 58.819 43.478 11.47 0.00 0.00 0.86
1706 1926 3.002791 GCAGCGCATACCACACATATAT 58.997 45.455 11.47 0.00 0.00 0.86
1707 1927 2.224161 TGCAGCGCATACCACACATATA 60.224 45.455 11.47 0.00 31.71 0.86
1708 1928 1.229428 GCAGCGCATACCACACATAT 58.771 50.000 11.47 0.00 0.00 1.78
1709 1929 0.107945 TGCAGCGCATACCACACATA 60.108 50.000 11.47 0.00 31.71 2.29
1710 1930 1.377072 TGCAGCGCATACCACACAT 60.377 52.632 11.47 0.00 31.71 3.21
1711 1931 2.031768 TGCAGCGCATACCACACA 59.968 55.556 11.47 0.00 31.71 3.72
1720 1940 5.038247 CATATTATTGAAGATGCAGCGCA 57.962 39.130 11.47 5.73 44.86 6.09
1727 1947 7.944061 TGGAACTTGGCATATTATTGAAGATG 58.056 34.615 0.00 0.00 37.34 2.90
1728 1948 8.716674 ATGGAACTTGGCATATTATTGAAGAT 57.283 30.769 0.00 0.00 0.00 2.40
1729 1949 8.000709 AGATGGAACTTGGCATATTATTGAAGA 58.999 33.333 0.00 0.00 0.00 2.87
1730 1950 8.174733 AGATGGAACTTGGCATATTATTGAAG 57.825 34.615 0.00 0.00 0.00 3.02
1731 1951 7.779326 TGAGATGGAACTTGGCATATTATTGAA 59.221 33.333 0.00 0.00 0.00 2.69
1732 1952 7.289310 TGAGATGGAACTTGGCATATTATTGA 58.711 34.615 0.00 0.00 0.00 2.57
1733 1953 7.309012 CCTGAGATGGAACTTGGCATATTATTG 60.309 40.741 0.00 0.00 0.00 1.90
1734 1954 6.718454 CCTGAGATGGAACTTGGCATATTATT 59.282 38.462 0.00 0.00 0.00 1.40
1735 1955 6.044754 TCCTGAGATGGAACTTGGCATATTAT 59.955 38.462 0.00 0.00 32.39 1.28
1736 1956 5.369404 TCCTGAGATGGAACTTGGCATATTA 59.631 40.000 0.00 0.00 32.39 0.98
1737 1957 4.166725 TCCTGAGATGGAACTTGGCATATT 59.833 41.667 0.00 0.00 32.39 1.28
1738 1958 3.718434 TCCTGAGATGGAACTTGGCATAT 59.282 43.478 0.00 0.00 32.39 1.78
1739 1959 3.114606 TCCTGAGATGGAACTTGGCATA 58.885 45.455 0.00 0.00 32.39 3.14
1740 1960 1.918262 TCCTGAGATGGAACTTGGCAT 59.082 47.619 0.00 0.00 32.39 4.40
1741 1961 1.361204 TCCTGAGATGGAACTTGGCA 58.639 50.000 0.00 0.00 32.39 4.92
1742 1962 2.725221 ATCCTGAGATGGAACTTGGC 57.275 50.000 0.00 0.00 39.85 4.52
1743 1963 3.384789 TCGTATCCTGAGATGGAACTTGG 59.615 47.826 0.00 0.00 39.85 3.61
1744 1964 4.098654 ACTCGTATCCTGAGATGGAACTTG 59.901 45.833 0.00 0.00 39.85 3.16
1745 1965 4.282496 ACTCGTATCCTGAGATGGAACTT 58.718 43.478 0.00 0.00 39.85 2.66
1746 1966 3.904717 ACTCGTATCCTGAGATGGAACT 58.095 45.455 0.00 0.00 39.85 3.01
1747 1967 4.822896 ACTACTCGTATCCTGAGATGGAAC 59.177 45.833 0.00 0.00 39.85 3.62
1748 1968 4.822350 CACTACTCGTATCCTGAGATGGAA 59.178 45.833 0.00 0.00 39.85 3.53
1749 1969 4.390264 CACTACTCGTATCCTGAGATGGA 58.610 47.826 0.00 0.00 40.82 3.41
1750 1970 3.504134 CCACTACTCGTATCCTGAGATGG 59.496 52.174 0.00 0.00 36.93 3.51
1751 1971 4.138290 ACCACTACTCGTATCCTGAGATG 58.862 47.826 0.00 0.00 36.93 2.90
1752 1972 4.440826 ACCACTACTCGTATCCTGAGAT 57.559 45.455 0.00 0.00 36.93 2.75
1753 1973 3.928005 ACCACTACTCGTATCCTGAGA 57.072 47.619 0.00 0.00 36.93 3.27
1754 1974 4.985538 AAACCACTACTCGTATCCTGAG 57.014 45.455 0.00 0.00 39.40 3.35
1755 1975 8.523915 TTTATAAACCACTACTCGTATCCTGA 57.476 34.615 0.00 0.00 0.00 3.86
1756 1976 9.760077 ATTTTATAAACCACTACTCGTATCCTG 57.240 33.333 0.00 0.00 0.00 3.86
1757 1977 9.978044 GATTTTATAAACCACTACTCGTATCCT 57.022 33.333 0.00 0.00 0.00 3.24
1758 1978 9.978044 AGATTTTATAAACCACTACTCGTATCC 57.022 33.333 0.00 0.00 0.00 2.59
1762 1982 8.932791 CAACAGATTTTATAAACCACTACTCGT 58.067 33.333 0.00 0.00 0.00 4.18
1763 1983 8.932791 ACAACAGATTTTATAAACCACTACTCG 58.067 33.333 0.00 0.00 0.00 4.18
1778 1998 8.779303 TGATACACGTTTGATACAACAGATTTT 58.221 29.630 0.00 0.00 0.00 1.82
1779 1999 8.227791 GTGATACACGTTTGATACAACAGATTT 58.772 33.333 0.00 0.00 0.00 2.17
1780 2000 7.602644 AGTGATACACGTTTGATACAACAGATT 59.397 33.333 0.00 0.00 39.64 2.40
1781 2001 7.097192 AGTGATACACGTTTGATACAACAGAT 58.903 34.615 0.00 0.00 39.64 2.90
1782 2002 6.452242 AGTGATACACGTTTGATACAACAGA 58.548 36.000 0.00 0.00 39.64 3.41
1783 2003 6.586463 AGAGTGATACACGTTTGATACAACAG 59.414 38.462 0.00 0.00 39.64 3.16
1784 2004 6.452242 AGAGTGATACACGTTTGATACAACA 58.548 36.000 0.00 0.00 39.64 3.33
1785 2005 6.946229 AGAGTGATACACGTTTGATACAAC 57.054 37.500 0.00 0.00 39.64 3.32
1786 2006 7.149307 TCAAGAGTGATACACGTTTGATACAA 58.851 34.615 14.68 0.00 39.64 2.41
1787 2007 6.683715 TCAAGAGTGATACACGTTTGATACA 58.316 36.000 14.68 0.00 39.64 2.29
1788 2008 6.237595 GCTCAAGAGTGATACACGTTTGATAC 60.238 42.308 17.09 12.14 39.13 2.24
1789 2009 5.805486 GCTCAAGAGTGATACACGTTTGATA 59.195 40.000 17.09 4.79 39.13 2.15
1790 2010 4.627467 GCTCAAGAGTGATACACGTTTGAT 59.373 41.667 17.09 0.00 39.13 2.57
1791 2011 3.987868 GCTCAAGAGTGATACACGTTTGA 59.012 43.478 16.40 16.40 39.64 2.69
1792 2012 3.740832 TGCTCAAGAGTGATACACGTTTG 59.259 43.478 0.00 0.00 39.64 2.93
1793 2013 3.990092 TGCTCAAGAGTGATACACGTTT 58.010 40.909 0.00 0.00 39.64 3.60
1794 2014 3.660501 TGCTCAAGAGTGATACACGTT 57.339 42.857 0.00 0.00 39.64 3.99
1795 2015 3.429547 GGATGCTCAAGAGTGATACACGT 60.430 47.826 0.00 0.00 39.64 4.49
1796 2016 3.119291 GGATGCTCAAGAGTGATACACG 58.881 50.000 0.00 0.00 39.64 4.49
1797 2017 4.128925 TGGATGCTCAAGAGTGATACAC 57.871 45.455 0.00 0.00 31.85 2.90
1801 2021 3.047115 AGGATGGATGCTCAAGAGTGAT 58.953 45.455 0.00 0.00 31.85 3.06
1810 2030 0.673022 GCCGATGAGGATGGATGCTC 60.673 60.000 1.38 1.38 45.00 4.26
1838 2058 0.247736 GGCTACCACTGTGACCTGAG 59.752 60.000 9.86 0.23 0.00 3.35
1922 2143 2.425312 AGAGATCTTGTGTGCTCCGTAG 59.575 50.000 0.00 0.00 0.00 3.51
2057 2278 1.658409 GTGCTTGAACTTGCCGTGC 60.658 57.895 0.00 0.00 0.00 5.34
2138 2359 2.797439 GCTACTAGCTAGCGCGCG 60.797 66.667 28.44 28.44 38.74 6.86
2199 2423 3.126001 CAAGTTCTGGAAGCCTACACA 57.874 47.619 0.00 0.00 0.00 3.72
2262 2486 3.406361 CGAGCAGCGACCACACAC 61.406 66.667 0.00 0.00 44.57 3.82
2263 2487 3.601685 TCGAGCAGCGACCACACA 61.602 61.111 0.00 0.00 45.59 3.72
2271 2495 2.653448 CCACGAGATCGAGCAGCG 60.653 66.667 9.58 13.17 43.02 5.18
2380 2609 3.561725 GCATCAGAACAGGGTAAGCATAC 59.438 47.826 0.00 0.00 0.00 2.39
2395 2624 1.404583 CGACACATGACCAGCATCAGA 60.405 52.381 0.00 0.00 34.15 3.27
2399 2628 1.159285 CAACGACACATGACCAGCAT 58.841 50.000 0.00 0.00 37.85 3.79
2405 2634 1.193203 CAGAGCACAACGACACATGAC 59.807 52.381 0.00 0.00 0.00 3.06
2410 2639 2.349817 CCAATTCAGAGCACAACGACAC 60.350 50.000 0.00 0.00 0.00 3.67
2420 2649 3.715628 AACACAACACCAATTCAGAGC 57.284 42.857 0.00 0.00 0.00 4.09
2446 2694 1.567746 GCAACAATTTTGCCCCAGCG 61.568 55.000 11.83 0.00 44.31 5.18
2457 2705 3.030291 TGTTTGGTCAGGAGCAACAATT 58.970 40.909 12.96 0.00 46.84 2.32
2458 2706 2.665165 TGTTTGGTCAGGAGCAACAAT 58.335 42.857 12.96 0.00 46.84 2.71
2462 2710 1.955778 CACATGTTTGGTCAGGAGCAA 59.044 47.619 9.64 9.64 45.73 3.91
2464 2712 0.883833 CCACATGTTTGGTCAGGAGC 59.116 55.000 0.00 0.00 0.00 4.70
2486 2736 4.453751 ACAGTTGAAAATGGCAGCAAAAT 58.546 34.783 0.00 0.00 0.00 1.82
2492 2742 3.624326 TCGAACAGTTGAAAATGGCAG 57.376 42.857 0.00 0.00 0.00 4.85
2495 2745 4.161333 GAGCATCGAACAGTTGAAAATGG 58.839 43.478 0.00 0.00 0.00 3.16
2496 2746 4.083110 AGGAGCATCGAACAGTTGAAAATG 60.083 41.667 0.00 0.00 34.37 2.32
2498 2748 3.476552 AGGAGCATCGAACAGTTGAAAA 58.523 40.909 0.00 0.00 34.37 2.29
2551 2801 4.019858 AGATCAGTACTACAGAGCAGCAA 58.980 43.478 0.00 0.00 0.00 3.91
2560 2810 4.809958 GTGCGTCTAGAGATCAGTACTACA 59.190 45.833 0.00 0.00 0.00 2.74
2561 2811 5.050634 CAGTGCGTCTAGAGATCAGTACTAC 60.051 48.000 0.00 0.00 0.00 2.73
2567 2976 2.680339 TGACAGTGCGTCTAGAGATCAG 59.320 50.000 0.00 0.00 45.60 2.90
2593 3002 0.532862 ATTCGCCATTCGCACTAGGG 60.533 55.000 0.00 0.00 37.30 3.53
2599 3008 2.817396 TCGCATTCGCCATTCGCA 60.817 55.556 0.00 0.00 37.30 5.10
2602 3011 1.273887 CGAGTCGCATTCGCCATTC 59.726 57.895 0.00 0.00 35.26 2.67
2603 3012 3.398920 CGAGTCGCATTCGCCATT 58.601 55.556 0.00 0.00 35.26 3.16
2621 3039 0.899720 ATGGCCTGCACAATTTCCAG 59.100 50.000 3.32 0.00 0.00 3.86
2628 3046 0.178967 TCTGGAAATGGCCTGCACAA 60.179 50.000 3.32 0.00 0.00 3.33
2630 3048 1.188863 ATTCTGGAAATGGCCTGCAC 58.811 50.000 3.32 0.00 0.00 4.57
2631 3049 2.658285 CTATTCTGGAAATGGCCTGCA 58.342 47.619 3.32 0.00 0.00 4.41
2632 3050 1.339291 GCTATTCTGGAAATGGCCTGC 59.661 52.381 3.32 0.00 0.00 4.85
2636 3054 2.291741 CCGAAGCTATTCTGGAAATGGC 59.708 50.000 0.00 0.00 33.56 4.40
2640 3058 2.170607 CCTCCCGAAGCTATTCTGGAAA 59.829 50.000 0.90 0.00 45.05 3.13
2642 3060 1.063190 TCCTCCCGAAGCTATTCTGGA 60.063 52.381 0.00 0.00 44.00 3.86
2643 3061 1.414158 TCCTCCCGAAGCTATTCTGG 58.586 55.000 0.00 0.00 40.25 3.86
2644 3062 4.464244 TCATATCCTCCCGAAGCTATTCTG 59.536 45.833 0.00 0.00 32.93 3.02
2645 3063 4.678256 TCATATCCTCCCGAAGCTATTCT 58.322 43.478 0.00 0.00 32.93 2.40
2646 3064 5.127845 TCATCATATCCTCCCGAAGCTATTC 59.872 44.000 0.00 0.00 0.00 1.75
2648 3066 4.614475 TCATCATATCCTCCCGAAGCTAT 58.386 43.478 0.00 0.00 0.00 2.97
2649 3067 4.047627 TCATCATATCCTCCCGAAGCTA 57.952 45.455 0.00 0.00 0.00 3.32
2650 3068 2.894731 TCATCATATCCTCCCGAAGCT 58.105 47.619 0.00 0.00 0.00 3.74
2652 3070 8.026026 CGAATATATCATCATATCCTCCCGAAG 58.974 40.741 0.00 0.00 0.00 3.79
2656 3074 9.482627 GAAACGAATATATCATCATATCCTCCC 57.517 37.037 0.00 0.00 0.00 4.30
2667 3085 9.973246 GCGACATTTATGAAACGAATATATCAT 57.027 29.630 0.00 0.00 36.54 2.45
2671 3089 7.716768 TGGCGACATTTATGAAACGAATATA 57.283 32.000 0.00 0.00 33.40 0.86
2672 3090 6.612247 TGGCGACATTTATGAAACGAATAT 57.388 33.333 0.00 0.00 33.40 1.28
2675 3093 4.750952 TTGGCGACATTTATGAAACGAA 57.249 36.364 0.00 0.00 42.32 3.85
2756 3201 1.134220 TCAAAGTCGTTTGGGCTGAGT 60.134 47.619 0.00 0.00 42.98 3.41
2831 3277 1.376424 CATGACCGGACAAGCAGCT 60.376 57.895 9.46 0.00 0.00 4.24
2833 3279 1.746615 CCCATGACCGGACAAGCAG 60.747 63.158 9.46 0.00 0.00 4.24
2842 3288 2.417516 CCGACTAGCCCATGACCG 59.582 66.667 0.00 0.00 0.00 4.79
2845 3291 2.016393 CTTCGCCGACTAGCCCATGA 62.016 60.000 0.00 0.00 0.00 3.07
2849 3295 2.104530 GTCTTCGCCGACTAGCCC 59.895 66.667 0.00 0.00 0.00 5.19
2948 3394 1.066605 GTGATGAACATGCTCATGGGC 59.933 52.381 16.15 11.75 42.91 5.36
3155 3601 0.976641 TTTCATCGCAGGTGGAGACT 59.023 50.000 0.00 0.00 0.00 3.24
3175 3621 2.223144 TGACGCTTCATTTTTCTGACCG 59.777 45.455 0.00 0.00 0.00 4.79
3177 3623 3.251004 AGGTGACGCTTCATTTTTCTGAC 59.749 43.478 0.00 0.00 33.11 3.51
3210 3656 9.350357 CTTGGTATTTTCATCACAAATTCAGAG 57.650 33.333 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.