Multiple sequence alignment - TraesCS1A01G050000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G050000 chr1A 100.000 2694 0 0 1 2694 31908345 31911038 0.000000e+00 4975.0
1 TraesCS1A01G050000 chr1A 92.196 1102 55 12 773 1862 31945524 31946606 0.000000e+00 1530.0
2 TraesCS1A01G050000 chr1A 90.013 741 49 13 1860 2578 31946842 31947579 0.000000e+00 935.0
3 TraesCS1A01G050000 chr1A 85.827 762 61 22 997 1729 13830553 13831296 0.000000e+00 765.0
4 TraesCS1A01G050000 chr1A 84.354 588 51 18 1154 1709 39822222 39822800 3.050000e-149 538.0
5 TraesCS1A01G050000 chr1A 87.812 361 34 8 1 355 74276681 74277037 5.370000e-112 414.0
6 TraesCS1A01G050000 chr1A 85.841 339 32 13 1060 1384 39832218 39832554 1.990000e-91 346.0
7 TraesCS1A01G050000 chr1D 93.740 1949 81 17 773 2694 33027697 33029631 0.000000e+00 2885.0
8 TraesCS1A01G050000 chr1D 83.912 1268 92 45 1170 2385 33412693 33413900 0.000000e+00 1109.0
9 TraesCS1A01G050000 chr1D 85.432 659 54 17 1160 1788 40433629 40434275 0.000000e+00 647.0
10 TraesCS1A01G050000 chr1D 84.370 691 50 26 1154 1796 40326011 40326691 2.280000e-175 625.0
11 TraesCS1A01G050000 chr1D 83.936 691 53 26 1154 1796 40381018 40381698 2.290000e-170 608.0
12 TraesCS1A01G050000 chr1D 94.100 339 17 2 2357 2694 33268883 33269219 1.850000e-141 512.0
13 TraesCS1A01G050000 chr1D 82.072 608 60 26 773 1335 40325487 40326090 8.730000e-130 473.0
14 TraesCS1A01G050000 chr1D 82.000 600 60 25 781 1335 40244155 40244751 1.460000e-127 466.0
15 TraesCS1A01G050000 chr1D 81.758 603 56 35 784 1335 40380498 40381097 3.160000e-124 455.0
16 TraesCS1A01G050000 chr1D 81.353 606 61 33 773 1337 40201994 40202588 1.900000e-121 446.0
17 TraesCS1A01G050000 chr1D 86.650 397 48 4 989 1384 40489233 40489625 4.120000e-118 435.0
18 TraesCS1A01G050000 chr1D 84.804 408 30 10 1339 1735 58816881 58817267 5.440000e-102 381.0
19 TraesCS1A01G050000 chr1D 88.034 234 25 3 2456 2687 33413900 33414132 9.500000e-70 274.0
20 TraesCS1A01G050000 chr1D 77.011 174 20 12 773 931 40488984 40489152 6.180000e-12 82.4
21 TraesCS1A01G050000 chr1B 86.912 680 48 17 1157 1796 60534232 60533554 0.000000e+00 725.0
22 TraesCS1A01G050000 chr1B 84.741 675 57 21 1157 1785 60048082 60048756 3.780000e-178 634.0
23 TraesCS1A01G050000 chr1B 84.593 675 58 20 1157 1785 59961646 59962320 1.760000e-176 628.0
24 TraesCS1A01G050000 chr1B 87.500 344 36 6 1 337 10223150 10223493 9.040000e-105 390.0
25 TraesCS1A01G050000 chr1B 82.540 126 15 3 784 907 59961108 59961228 1.320000e-18 104.0
26 TraesCS1A01G050000 chr1B 80.000 130 18 4 773 900 59855083 59855206 3.690000e-14 89.8
27 TraesCS1A01G050000 chr1B 80.000 130 18 5 773 900 59912552 59912675 3.690000e-14 89.8
28 TraesCS1A01G050000 chr6B 81.808 863 78 28 989 1799 41418769 41417934 0.000000e+00 651.0
29 TraesCS1A01G050000 chr6D 80.201 995 84 46 989 1931 25533963 25533030 2.260000e-180 641.0
30 TraesCS1A01G050000 chr6D 88.953 344 29 9 1 337 47262457 47262798 1.490000e-112 416.0
31 TraesCS1A01G050000 chrUn 80.351 911 75 42 989 1841 71523389 71524253 1.790000e-166 595.0
32 TraesCS1A01G050000 chr2D 93.586 343 16 3 1 337 643829999 643829657 8.610000e-140 507.0
33 TraesCS1A01G050000 chr5D 89.412 340 30 5 4 337 322192297 322191958 8.920000e-115 424.0
34 TraesCS1A01G050000 chr5D 88.047 343 35 6 1 338 514945671 514945330 4.180000e-108 401.0
35 TraesCS1A01G050000 chr5D 88.081 344 32 8 4 340 43226937 43226596 1.500000e-107 399.0
36 TraesCS1A01G050000 chr5B 89.728 331 26 7 1 324 391808982 391808653 1.490000e-112 416.0
37 TraesCS1A01G050000 chr6A 88.095 336 32 6 1 331 557403467 557403135 2.510000e-105 392.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G050000 chr1A 31908345 31911038 2693 False 4975.0 4975 100.0000 1 2694 1 chr1A.!!$F2 2693
1 TraesCS1A01G050000 chr1A 31945524 31947579 2055 False 1232.5 1530 91.1045 773 2578 2 chr1A.!!$F6 1805
2 TraesCS1A01G050000 chr1A 13830553 13831296 743 False 765.0 765 85.8270 997 1729 1 chr1A.!!$F1 732
3 TraesCS1A01G050000 chr1A 39822222 39822800 578 False 538.0 538 84.3540 1154 1709 1 chr1A.!!$F3 555
4 TraesCS1A01G050000 chr1D 33027697 33029631 1934 False 2885.0 2885 93.7400 773 2694 1 chr1D.!!$F1 1921
5 TraesCS1A01G050000 chr1D 33412693 33414132 1439 False 691.5 1109 85.9730 1170 2687 2 chr1D.!!$F7 1517
6 TraesCS1A01G050000 chr1D 40433629 40434275 646 False 647.0 647 85.4320 1160 1788 1 chr1D.!!$F5 628
7 TraesCS1A01G050000 chr1D 40325487 40326691 1204 False 549.0 625 83.2210 773 1796 2 chr1D.!!$F8 1023
8 TraesCS1A01G050000 chr1D 40380498 40381698 1200 False 531.5 608 82.8470 784 1796 2 chr1D.!!$F9 1012
9 TraesCS1A01G050000 chr1D 40244155 40244751 596 False 466.0 466 82.0000 781 1335 1 chr1D.!!$F4 554
10 TraesCS1A01G050000 chr1D 40201994 40202588 594 False 446.0 446 81.3530 773 1337 1 chr1D.!!$F3 564
11 TraesCS1A01G050000 chr1D 40488984 40489625 641 False 258.7 435 81.8305 773 1384 2 chr1D.!!$F10 611
12 TraesCS1A01G050000 chr1B 60533554 60534232 678 True 725.0 725 86.9120 1157 1796 1 chr1B.!!$R1 639
13 TraesCS1A01G050000 chr1B 60048082 60048756 674 False 634.0 634 84.7410 1157 1785 1 chr1B.!!$F4 628
14 TraesCS1A01G050000 chr1B 59961108 59962320 1212 False 366.0 628 83.5665 784 1785 2 chr1B.!!$F5 1001
15 TraesCS1A01G050000 chr6B 41417934 41418769 835 True 651.0 651 81.8080 989 1799 1 chr6B.!!$R1 810
16 TraesCS1A01G050000 chr6D 25533030 25533963 933 True 641.0 641 80.2010 989 1931 1 chr6D.!!$R1 942
17 TraesCS1A01G050000 chrUn 71523389 71524253 864 False 595.0 595 80.3510 989 1841 1 chrUn.!!$F1 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.104934 GAGGCCTCCAATCCTAGGGA 60.105 60.0 23.19 0.0 35.55 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2241 1.141881 CACCGGAAGTAGCATCGCT 59.858 57.895 9.46 0.0 43.41 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.703892 ATCGTAAATCAAATCCAAAATTGAACA 57.296 25.926 0.00 0.00 38.88 3.18
45 46 8.973378 TCGTAAATCAAATCCAAAATTGAACAC 58.027 29.630 0.00 0.00 38.88 3.32
46 47 8.220434 CGTAAATCAAATCCAAAATTGAACACC 58.780 33.333 0.00 0.00 38.88 4.16
47 48 9.271828 GTAAATCAAATCCAAAATTGAACACCT 57.728 29.630 0.00 0.00 38.88 4.00
48 49 7.967890 AATCAAATCCAAAATTGAACACCTC 57.032 32.000 0.00 0.00 38.88 3.85
49 50 6.477053 TCAAATCCAAAATTGAACACCTCA 57.523 33.333 0.00 0.00 32.89 3.86
61 62 5.356882 TGAACACCTCAATCGAATGAAAC 57.643 39.130 4.46 0.00 0.00 2.78
62 63 4.819088 TGAACACCTCAATCGAATGAAACA 59.181 37.500 4.46 0.00 0.00 2.83
63 64 5.298026 TGAACACCTCAATCGAATGAAACAA 59.702 36.000 4.46 0.00 0.00 2.83
64 65 5.108385 ACACCTCAATCGAATGAAACAAC 57.892 39.130 4.46 0.00 0.00 3.32
65 66 4.821805 ACACCTCAATCGAATGAAACAACT 59.178 37.500 4.46 0.00 0.00 3.16
66 67 5.299279 ACACCTCAATCGAATGAAACAACTT 59.701 36.000 4.46 0.00 0.00 2.66
67 68 6.183360 ACACCTCAATCGAATGAAACAACTTT 60.183 34.615 4.46 0.00 0.00 2.66
68 69 7.012894 ACACCTCAATCGAATGAAACAACTTTA 59.987 33.333 4.46 0.00 0.00 1.85
69 70 7.860373 CACCTCAATCGAATGAAACAACTTTAA 59.140 33.333 4.46 0.00 0.00 1.52
70 71 8.410141 ACCTCAATCGAATGAAACAACTTTAAA 58.590 29.630 4.46 0.00 0.00 1.52
71 72 9.243637 CCTCAATCGAATGAAACAACTTTAAAA 57.756 29.630 4.46 0.00 0.00 1.52
77 78 9.685828 TCGAATGAAACAACTTTAAAATTAGGG 57.314 29.630 0.00 0.00 0.00 3.53
78 79 9.685828 CGAATGAAACAACTTTAAAATTAGGGA 57.314 29.630 0.00 0.00 0.00 4.20
117 118 9.479549 AAAATAATTAAATGAGAGAGCCCTTGA 57.520 29.630 0.00 0.00 0.00 3.02
118 119 8.688747 AATAATTAAATGAGAGAGCCCTTGAG 57.311 34.615 0.00 0.00 0.00 3.02
119 120 5.965033 ATTAAATGAGAGAGCCCTTGAGA 57.035 39.130 0.00 0.00 0.00 3.27
120 121 5.762179 TTAAATGAGAGAGCCCTTGAGAA 57.238 39.130 0.00 0.00 0.00 2.87
121 122 4.647564 AAATGAGAGAGCCCTTGAGAAA 57.352 40.909 0.00 0.00 0.00 2.52
122 123 4.858965 AATGAGAGAGCCCTTGAGAAAT 57.141 40.909 0.00 0.00 0.00 2.17
123 124 4.858965 ATGAGAGAGCCCTTGAGAAATT 57.141 40.909 0.00 0.00 0.00 1.82
124 125 5.965033 ATGAGAGAGCCCTTGAGAAATTA 57.035 39.130 0.00 0.00 0.00 1.40
125 126 5.965033 TGAGAGAGCCCTTGAGAAATTAT 57.035 39.130 0.00 0.00 0.00 1.28
126 127 6.319048 TGAGAGAGCCCTTGAGAAATTATT 57.681 37.500 0.00 0.00 0.00 1.40
127 128 6.118170 TGAGAGAGCCCTTGAGAAATTATTG 58.882 40.000 0.00 0.00 0.00 1.90
128 129 6.070021 TGAGAGAGCCCTTGAGAAATTATTGA 60.070 38.462 0.00 0.00 0.00 2.57
129 130 6.118852 AGAGAGCCCTTGAGAAATTATTGAC 58.881 40.000 0.00 0.00 0.00 3.18
130 131 5.196695 AGAGCCCTTGAGAAATTATTGACC 58.803 41.667 0.00 0.00 0.00 4.02
131 132 4.281657 AGCCCTTGAGAAATTATTGACCC 58.718 43.478 0.00 0.00 0.00 4.46
132 133 4.023291 GCCCTTGAGAAATTATTGACCCA 58.977 43.478 0.00 0.00 0.00 4.51
133 134 4.098501 GCCCTTGAGAAATTATTGACCCAG 59.901 45.833 0.00 0.00 0.00 4.45
134 135 5.264395 CCCTTGAGAAATTATTGACCCAGT 58.736 41.667 0.00 0.00 0.00 4.00
135 136 5.358160 CCCTTGAGAAATTATTGACCCAGTC 59.642 44.000 0.00 0.00 0.00 3.51
136 137 5.945784 CCTTGAGAAATTATTGACCCAGTCA 59.054 40.000 0.00 0.00 41.09 3.41
149 150 5.318630 TGACCCAGTCAAAATTAGGTTACC 58.681 41.667 0.00 0.00 39.78 2.85
150 151 4.669700 ACCCAGTCAAAATTAGGTTACCC 58.330 43.478 0.00 0.00 0.00 3.69
151 152 4.106663 ACCCAGTCAAAATTAGGTTACCCA 59.893 41.667 0.00 0.00 0.00 4.51
152 153 5.081032 CCCAGTCAAAATTAGGTTACCCAA 58.919 41.667 0.00 0.00 0.00 4.12
153 154 5.719563 CCCAGTCAAAATTAGGTTACCCAAT 59.280 40.000 0.00 0.00 0.00 3.16
154 155 6.212589 CCCAGTCAAAATTAGGTTACCCAATT 59.787 38.462 2.03 2.03 0.00 2.32
155 156 7.320399 CCAGTCAAAATTAGGTTACCCAATTC 58.680 38.462 8.14 0.00 0.00 2.17
156 157 7.178451 CCAGTCAAAATTAGGTTACCCAATTCT 59.822 37.037 8.14 0.00 0.00 2.40
157 158 9.238368 CAGTCAAAATTAGGTTACCCAATTCTA 57.762 33.333 8.14 0.00 0.00 2.10
158 159 9.816787 AGTCAAAATTAGGTTACCCAATTCTAA 57.183 29.630 8.14 0.00 0.00 2.10
167 168 7.515586 AGGTTACCCAATTCTAAACTATAGCC 58.484 38.462 0.00 0.00 0.00 3.93
168 169 7.350124 AGGTTACCCAATTCTAAACTATAGCCT 59.650 37.037 0.00 0.00 0.00 4.58
169 170 7.660617 GGTTACCCAATTCTAAACTATAGCCTC 59.339 40.741 0.00 0.00 0.00 4.70
170 171 6.824958 ACCCAATTCTAAACTATAGCCTCA 57.175 37.500 0.00 0.00 0.00 3.86
171 172 6.831976 ACCCAATTCTAAACTATAGCCTCAG 58.168 40.000 0.00 0.00 0.00 3.35
172 173 6.387220 ACCCAATTCTAAACTATAGCCTCAGT 59.613 38.462 0.00 0.00 0.00 3.41
173 174 7.092399 ACCCAATTCTAAACTATAGCCTCAGTT 60.092 37.037 0.00 0.00 36.56 3.16
174 175 8.429641 CCCAATTCTAAACTATAGCCTCAGTTA 58.570 37.037 0.00 0.00 33.92 2.24
175 176 9.832445 CCAATTCTAAACTATAGCCTCAGTTAA 57.168 33.333 0.00 0.00 33.92 2.01
180 181 9.817809 TCTAAACTATAGCCTCAGTTAATTGTG 57.182 33.333 0.00 0.00 33.92 3.33
181 182 9.817809 CTAAACTATAGCCTCAGTTAATTGTGA 57.182 33.333 0.00 0.00 33.92 3.58
183 184 9.515226 AAACTATAGCCTCAGTTAATTGTGAAA 57.485 29.630 0.00 0.00 33.92 2.69
184 185 9.515226 AACTATAGCCTCAGTTAATTGTGAAAA 57.485 29.630 0.00 0.00 33.29 2.29
185 186 9.686683 ACTATAGCCTCAGTTAATTGTGAAAAT 57.313 29.630 0.00 0.00 0.00 1.82
249 250 9.150348 TGAAAGAGTTTTGAGAAATTTTTGACC 57.850 29.630 0.00 0.00 0.00 4.02
250 251 7.755582 AAGAGTTTTGAGAAATTTTTGACCG 57.244 32.000 0.00 0.00 0.00 4.79
251 252 6.273071 AGAGTTTTGAGAAATTTTTGACCGG 58.727 36.000 0.00 0.00 0.00 5.28
252 253 5.972935 AGTTTTGAGAAATTTTTGACCGGT 58.027 33.333 6.92 6.92 0.00 5.28
253 254 6.040247 AGTTTTGAGAAATTTTTGACCGGTC 58.960 36.000 28.17 28.17 0.00 4.79
254 255 5.584253 TTTGAGAAATTTTTGACCGGTCA 57.416 34.783 33.23 33.23 37.91 4.02
255 256 5.584253 TTGAGAAATTTTTGACCGGTCAA 57.416 34.783 39.59 39.59 46.72 3.18
263 264 2.074729 TTGACCGGTCAAAATTGGGT 57.925 45.000 40.69 0.00 45.56 4.51
264 265 1.323412 TGACCGGTCAAAATTGGGTG 58.677 50.000 34.60 0.00 36.53 4.61
265 266 1.133761 TGACCGGTCAAAATTGGGTGA 60.134 47.619 34.60 6.79 36.53 4.02
266 267 1.268625 GACCGGTCAAAATTGGGTGAC 59.731 52.381 29.75 8.11 42.83 3.67
283 284 4.855340 GGTGACCAAATCCCAATTAGAGA 58.145 43.478 0.00 0.00 0.00 3.10
284 285 4.640647 GGTGACCAAATCCCAATTAGAGAC 59.359 45.833 0.00 0.00 0.00 3.36
285 286 4.640647 GTGACCAAATCCCAATTAGAGACC 59.359 45.833 0.00 0.00 0.00 3.85
286 287 4.540099 TGACCAAATCCCAATTAGAGACCT 59.460 41.667 0.00 0.00 0.00 3.85
287 288 5.117406 ACCAAATCCCAATTAGAGACCTC 57.883 43.478 0.00 0.00 0.00 3.85
288 289 4.540099 ACCAAATCCCAATTAGAGACCTCA 59.460 41.667 0.00 0.00 0.00 3.86
289 290 5.015178 ACCAAATCCCAATTAGAGACCTCAA 59.985 40.000 0.00 0.00 0.00 3.02
290 291 6.131961 CCAAATCCCAATTAGAGACCTCAAT 58.868 40.000 0.00 0.00 0.00 2.57
291 292 6.608808 CCAAATCCCAATTAGAGACCTCAATT 59.391 38.462 0.00 1.86 0.00 2.32
292 293 7.417116 CCAAATCCCAATTAGAGACCTCAATTG 60.417 40.741 17.83 17.83 37.56 2.32
293 294 6.581388 ATCCCAATTAGAGACCTCAATTGA 57.419 37.500 22.06 8.12 38.65 2.57
294 295 6.581388 TCCCAATTAGAGACCTCAATTGAT 57.419 37.500 22.06 0.00 38.65 2.57
295 296 6.973642 TCCCAATTAGAGACCTCAATTGATT 58.026 36.000 22.06 0.00 38.65 2.57
296 297 6.830324 TCCCAATTAGAGACCTCAATTGATTG 59.170 38.462 22.06 7.08 38.65 2.67
297 298 6.604795 CCCAATTAGAGACCTCAATTGATTGT 59.395 38.462 22.06 9.43 38.65 2.71
298 299 7.415989 CCCAATTAGAGACCTCAATTGATTGTG 60.416 40.741 22.06 0.00 38.65 3.33
299 300 7.337689 CCAATTAGAGACCTCAATTGATTGTGA 59.662 37.037 22.06 0.00 38.65 3.58
300 301 8.396390 CAATTAGAGACCTCAATTGATTGTGAG 58.604 37.037 8.96 0.00 38.65 3.51
306 307 2.686915 CTCAATTGATTGTGAGGCCTCC 59.313 50.000 29.95 20.55 38.08 4.30
307 308 2.041485 TCAATTGATTGTGAGGCCTCCA 59.959 45.455 29.95 22.85 38.84 3.86
308 309 2.827322 CAATTGATTGTGAGGCCTCCAA 59.173 45.455 29.95 28.82 33.22 3.53
309 310 2.905415 TTGATTGTGAGGCCTCCAAT 57.095 45.000 32.50 32.50 35.06 3.16
310 311 2.425143 TGATTGTGAGGCCTCCAATC 57.575 50.000 38.32 38.32 41.83 2.67
311 312 1.064463 TGATTGTGAGGCCTCCAATCC 60.064 52.381 39.53 30.76 41.37 3.01
312 313 1.213926 GATTGTGAGGCCTCCAATCCT 59.786 52.381 36.98 24.56 39.10 3.24
313 314 1.965414 TTGTGAGGCCTCCAATCCTA 58.035 50.000 29.95 6.44 31.71 2.94
314 315 1.500474 TGTGAGGCCTCCAATCCTAG 58.500 55.000 29.95 0.00 31.71 3.02
315 316 0.761802 GTGAGGCCTCCAATCCTAGG 59.238 60.000 29.95 0.82 35.86 3.02
316 317 0.400525 TGAGGCCTCCAATCCTAGGG 60.401 60.000 29.95 0.00 33.17 3.53
317 318 0.104934 GAGGCCTCCAATCCTAGGGA 60.105 60.000 23.19 0.00 35.55 4.20
324 325 3.582164 CTCCAATCCTAGGGAGCTTAGT 58.418 50.000 9.46 0.00 43.80 2.24
325 326 4.742012 CTCCAATCCTAGGGAGCTTAGTA 58.258 47.826 9.46 0.00 43.80 1.82
326 327 5.148502 CTCCAATCCTAGGGAGCTTAGTAA 58.851 45.833 9.46 0.00 43.80 2.24
327 328 5.727630 TCCAATCCTAGGGAGCTTAGTAAT 58.272 41.667 9.46 0.00 34.05 1.89
328 329 6.871035 TCCAATCCTAGGGAGCTTAGTAATA 58.129 40.000 9.46 0.00 34.05 0.98
329 330 7.488205 TCCAATCCTAGGGAGCTTAGTAATAT 58.512 38.462 9.46 0.00 34.05 1.28
330 331 8.630091 TCCAATCCTAGGGAGCTTAGTAATATA 58.370 37.037 9.46 0.00 34.05 0.86
331 332 8.919145 CCAATCCTAGGGAGCTTAGTAATATAG 58.081 40.741 9.46 0.00 34.05 1.31
332 333 9.482175 CAATCCTAGGGAGCTTAGTAATATAGT 57.518 37.037 9.46 0.00 34.05 2.12
356 357 9.841295 AGTATATGATAATATGCATGCATGTCA 57.159 29.630 37.43 31.17 37.82 3.58
357 358 9.874215 GTATATGATAATATGCATGCATGTCAC 57.126 33.333 37.43 24.90 37.82 3.67
358 359 8.747538 ATATGATAATATGCATGCATGTCACT 57.252 30.769 37.43 21.28 37.82 3.41
359 360 6.887626 TGATAATATGCATGCATGTCACTT 57.112 33.333 37.43 24.03 37.82 3.16
360 361 7.279750 TGATAATATGCATGCATGTCACTTT 57.720 32.000 37.43 20.61 37.82 2.66
361 362 7.142680 TGATAATATGCATGCATGTCACTTTG 58.857 34.615 37.43 1.63 37.82 2.77
362 363 2.665649 ATGCATGCATGTCACTTTGG 57.334 45.000 31.74 0.00 35.03 3.28
363 364 1.618487 TGCATGCATGTCACTTTGGA 58.382 45.000 26.79 0.00 0.00 3.53
364 365 1.542472 TGCATGCATGTCACTTTGGAG 59.458 47.619 26.79 0.00 0.00 3.86
365 366 1.135199 GCATGCATGTCACTTTGGAGG 60.135 52.381 26.79 0.00 0.00 4.30
366 367 2.439409 CATGCATGTCACTTTGGAGGA 58.561 47.619 18.91 0.00 0.00 3.71
367 368 2.655090 TGCATGTCACTTTGGAGGAA 57.345 45.000 0.00 0.00 0.00 3.36
368 369 2.507484 TGCATGTCACTTTGGAGGAAG 58.493 47.619 0.00 0.00 0.00 3.46
369 370 1.815003 GCATGTCACTTTGGAGGAAGG 59.185 52.381 0.00 0.00 0.00 3.46
370 371 2.553028 GCATGTCACTTTGGAGGAAGGA 60.553 50.000 0.00 0.00 0.00 3.36
371 372 3.875369 GCATGTCACTTTGGAGGAAGGAT 60.875 47.826 0.00 0.00 0.00 3.24
372 373 4.626287 GCATGTCACTTTGGAGGAAGGATA 60.626 45.833 0.00 0.00 0.00 2.59
373 374 4.553330 TGTCACTTTGGAGGAAGGATAC 57.447 45.455 0.00 0.00 0.00 2.24
390 391 5.024785 GGATACTTACAAGTTCAGGGAGG 57.975 47.826 0.00 0.00 40.37 4.30
391 392 4.715297 GGATACTTACAAGTTCAGGGAGGA 59.285 45.833 0.00 0.00 40.37 3.71
392 393 5.395435 GGATACTTACAAGTTCAGGGAGGAC 60.395 48.000 0.00 0.00 40.37 3.85
393 394 3.314693 ACTTACAAGTTCAGGGAGGACA 58.685 45.455 0.00 0.00 35.21 4.02
394 395 3.910627 ACTTACAAGTTCAGGGAGGACAT 59.089 43.478 0.00 0.00 35.21 3.06
395 396 2.867109 ACAAGTTCAGGGAGGACATG 57.133 50.000 0.00 0.00 0.00 3.21
396 397 1.352352 ACAAGTTCAGGGAGGACATGG 59.648 52.381 0.00 0.00 0.00 3.66
397 398 0.329596 AAGTTCAGGGAGGACATGGC 59.670 55.000 0.00 0.00 0.00 4.40
398 399 1.450312 GTTCAGGGAGGACATGGCG 60.450 63.158 0.00 0.00 0.00 5.69
399 400 1.612146 TTCAGGGAGGACATGGCGA 60.612 57.895 0.00 0.00 0.00 5.54
400 401 1.617018 TTCAGGGAGGACATGGCGAG 61.617 60.000 0.00 0.00 0.00 5.03
401 402 2.060383 CAGGGAGGACATGGCGAGA 61.060 63.158 0.00 0.00 0.00 4.04
402 403 1.306141 AGGGAGGACATGGCGAGAA 60.306 57.895 0.00 0.00 0.00 2.87
403 404 0.909610 AGGGAGGACATGGCGAGAAA 60.910 55.000 0.00 0.00 0.00 2.52
404 405 0.181350 GGGAGGACATGGCGAGAAAT 59.819 55.000 0.00 0.00 0.00 2.17
405 406 1.416401 GGGAGGACATGGCGAGAAATA 59.584 52.381 0.00 0.00 0.00 1.40
406 407 2.548920 GGGAGGACATGGCGAGAAATAG 60.549 54.545 0.00 0.00 0.00 1.73
407 408 2.139118 GAGGACATGGCGAGAAATAGC 58.861 52.381 0.00 0.00 0.00 2.97
408 409 1.486310 AGGACATGGCGAGAAATAGCA 59.514 47.619 0.00 0.00 34.54 3.49
409 410 2.092968 AGGACATGGCGAGAAATAGCAA 60.093 45.455 0.00 0.00 34.54 3.91
410 411 2.682856 GGACATGGCGAGAAATAGCAAA 59.317 45.455 0.00 0.00 34.54 3.68
411 412 3.128589 GGACATGGCGAGAAATAGCAAAA 59.871 43.478 0.00 0.00 34.54 2.44
412 413 4.346129 GACATGGCGAGAAATAGCAAAAG 58.654 43.478 0.00 0.00 34.54 2.27
413 414 4.009675 ACATGGCGAGAAATAGCAAAAGA 58.990 39.130 0.00 0.00 34.54 2.52
414 415 4.142600 ACATGGCGAGAAATAGCAAAAGAC 60.143 41.667 0.00 0.00 34.54 3.01
415 416 3.407698 TGGCGAGAAATAGCAAAAGACA 58.592 40.909 0.00 0.00 34.54 3.41
416 417 4.009675 TGGCGAGAAATAGCAAAAGACAT 58.990 39.130 0.00 0.00 34.54 3.06
417 418 4.142622 TGGCGAGAAATAGCAAAAGACATG 60.143 41.667 0.00 0.00 34.54 3.21
418 419 4.094887 GGCGAGAAATAGCAAAAGACATGA 59.905 41.667 0.00 0.00 34.54 3.07
419 420 5.024555 GCGAGAAATAGCAAAAGACATGAC 58.975 41.667 0.00 0.00 0.00 3.06
420 421 5.390885 GCGAGAAATAGCAAAAGACATGACA 60.391 40.000 0.00 0.00 0.00 3.58
421 422 6.602179 CGAGAAATAGCAAAAGACATGACAA 58.398 36.000 0.00 0.00 0.00 3.18
422 423 7.246311 CGAGAAATAGCAAAAGACATGACAAT 58.754 34.615 0.00 0.00 0.00 2.71
423 424 7.427606 CGAGAAATAGCAAAAGACATGACAATC 59.572 37.037 0.00 0.00 0.00 2.67
424 425 7.542025 AGAAATAGCAAAAGACATGACAATCC 58.458 34.615 0.00 0.00 0.00 3.01
425 426 6.839124 AATAGCAAAAGACATGACAATCCA 57.161 33.333 0.00 0.00 0.00 3.41
426 427 6.839124 ATAGCAAAAGACATGACAATCCAA 57.161 33.333 0.00 0.00 0.00 3.53
427 428 5.130292 AGCAAAAGACATGACAATCCAAG 57.870 39.130 0.00 0.00 0.00 3.61
428 429 3.676646 GCAAAAGACATGACAATCCAAGC 59.323 43.478 0.00 0.00 0.00 4.01
429 430 4.560108 GCAAAAGACATGACAATCCAAGCT 60.560 41.667 0.00 0.00 0.00 3.74
430 431 5.535333 CAAAAGACATGACAATCCAAGCTT 58.465 37.500 0.00 0.00 0.00 3.74
431 432 6.680810 CAAAAGACATGACAATCCAAGCTTA 58.319 36.000 0.00 0.00 0.00 3.09
432 433 5.886960 AAGACATGACAATCCAAGCTTAC 57.113 39.130 0.00 0.00 0.00 2.34
433 434 3.935203 AGACATGACAATCCAAGCTTACG 59.065 43.478 0.00 0.00 0.00 3.18
434 435 3.674997 ACATGACAATCCAAGCTTACGT 58.325 40.909 0.00 0.00 0.00 3.57
435 436 4.827692 ACATGACAATCCAAGCTTACGTA 58.172 39.130 0.00 0.00 0.00 3.57
436 437 5.242434 ACATGACAATCCAAGCTTACGTAA 58.758 37.500 7.94 7.94 0.00 3.18
437 438 5.880332 ACATGACAATCCAAGCTTACGTAAT 59.120 36.000 8.76 0.00 0.00 1.89
438 439 6.374333 ACATGACAATCCAAGCTTACGTAATT 59.626 34.615 8.76 0.00 0.00 1.40
439 440 6.811253 TGACAATCCAAGCTTACGTAATTT 57.189 33.333 8.76 4.06 0.00 1.82
440 441 6.607689 TGACAATCCAAGCTTACGTAATTTG 58.392 36.000 18.57 18.57 0.00 2.32
441 442 6.205853 TGACAATCCAAGCTTACGTAATTTGT 59.794 34.615 21.44 15.84 0.00 2.83
442 443 6.608610 ACAATCCAAGCTTACGTAATTTGTC 58.391 36.000 21.44 7.37 0.00 3.18
443 444 6.205853 ACAATCCAAGCTTACGTAATTTGTCA 59.794 34.615 21.44 13.34 0.00 3.58
444 445 6.811253 ATCCAAGCTTACGTAATTTGTCAA 57.189 33.333 21.44 12.66 0.00 3.18
445 446 6.621316 TCCAAGCTTACGTAATTTGTCAAA 57.379 33.333 21.44 0.00 0.00 2.69
446 447 7.209471 TCCAAGCTTACGTAATTTGTCAAAT 57.791 32.000 21.44 4.91 0.00 2.32
447 448 7.653647 TCCAAGCTTACGTAATTTGTCAAATT 58.346 30.769 23.40 23.40 43.19 1.82
448 449 7.593273 TCCAAGCTTACGTAATTTGTCAAATTG 59.407 33.333 26.74 16.64 41.01 2.32
449 450 7.593273 CCAAGCTTACGTAATTTGTCAAATTGA 59.407 33.333 26.74 12.57 41.01 2.57
450 451 8.963130 CAAGCTTACGTAATTTGTCAAATTGAA 58.037 29.630 26.74 16.34 41.01 2.69
451 452 8.502161 AGCTTACGTAATTTGTCAAATTGAAC 57.498 30.769 26.74 18.81 41.01 3.18
452 453 8.132362 AGCTTACGTAATTTGTCAAATTGAACA 58.868 29.630 26.74 9.72 41.01 3.18
453 454 8.417176 GCTTACGTAATTTGTCAAATTGAACAG 58.583 33.333 26.74 17.96 41.01 3.16
454 455 8.789881 TTACGTAATTTGTCAAATTGAACAGG 57.210 30.769 26.74 17.06 41.01 4.00
455 456 5.689961 ACGTAATTTGTCAAATTGAACAGGC 59.310 36.000 26.74 11.25 41.01 4.85
456 457 5.689514 CGTAATTTGTCAAATTGAACAGGCA 59.310 36.000 26.74 7.55 41.01 4.75
457 458 6.199908 CGTAATTTGTCAAATTGAACAGGCAA 59.800 34.615 26.74 6.94 41.01 4.52
458 459 5.989551 ATTTGTCAAATTGAACAGGCAAC 57.010 34.783 4.91 0.00 0.00 4.17
459 460 4.462508 TTGTCAAATTGAACAGGCAACA 57.537 36.364 0.00 0.00 41.41 3.33
460 461 4.462508 TGTCAAATTGAACAGGCAACAA 57.537 36.364 0.00 0.00 41.41 2.83
461 462 4.180057 TGTCAAATTGAACAGGCAACAAC 58.820 39.130 0.00 0.00 41.41 3.32
462 463 4.081752 TGTCAAATTGAACAGGCAACAACT 60.082 37.500 0.00 0.00 41.41 3.16
463 464 5.126222 TGTCAAATTGAACAGGCAACAACTA 59.874 36.000 0.00 0.00 41.41 2.24
464 465 6.183360 TGTCAAATTGAACAGGCAACAACTAT 60.183 34.615 0.00 0.00 41.41 2.12
465 466 6.363357 GTCAAATTGAACAGGCAACAACTATC 59.637 38.462 0.00 0.00 41.41 2.08
466 467 6.265196 TCAAATTGAACAGGCAACAACTATCT 59.735 34.615 0.00 0.00 41.41 1.98
467 468 6.655078 AATTGAACAGGCAACAACTATCTT 57.345 33.333 0.00 0.00 41.41 2.40
468 469 6.655078 ATTGAACAGGCAACAACTATCTTT 57.345 33.333 0.00 0.00 41.41 2.52
469 470 6.463995 TTGAACAGGCAACAACTATCTTTT 57.536 33.333 0.00 0.00 41.41 2.27
470 471 7.575414 TTGAACAGGCAACAACTATCTTTTA 57.425 32.000 0.00 0.00 41.41 1.52
471 472 7.759489 TGAACAGGCAACAACTATCTTTTAT 57.241 32.000 0.00 0.00 41.41 1.40
472 473 8.177119 TGAACAGGCAACAACTATCTTTTATT 57.823 30.769 0.00 0.00 41.41 1.40
473 474 8.637986 TGAACAGGCAACAACTATCTTTTATTT 58.362 29.630 0.00 0.00 41.41 1.40
474 475 8.816640 AACAGGCAACAACTATCTTTTATTTG 57.183 30.769 0.00 0.00 41.41 2.32
475 476 7.951591 ACAGGCAACAACTATCTTTTATTTGT 58.048 30.769 0.00 0.00 41.41 2.83
476 477 8.421002 ACAGGCAACAACTATCTTTTATTTGTT 58.579 29.630 0.00 0.00 40.22 2.83
477 478 8.915654 CAGGCAACAACTATCTTTTATTTGTTC 58.084 33.333 0.00 0.00 38.11 3.18
478 479 8.860088 AGGCAACAACTATCTTTTATTTGTTCT 58.140 29.630 0.00 0.00 38.11 3.01
479 480 8.915654 GGCAACAACTATCTTTTATTTGTTCTG 58.084 33.333 0.00 0.00 38.11 3.02
480 481 8.427774 GCAACAACTATCTTTTATTTGTTCTGC 58.572 33.333 0.00 0.00 38.11 4.26
481 482 9.462174 CAACAACTATCTTTTATTTGTTCTGCA 57.538 29.630 0.00 0.00 38.11 4.41
482 483 9.463443 AACAACTATCTTTTATTTGTTCTGCAC 57.537 29.630 0.00 0.00 35.94 4.57
483 484 8.850156 ACAACTATCTTTTATTTGTTCTGCACT 58.150 29.630 0.00 0.00 0.00 4.40
484 485 9.683069 CAACTATCTTTTATTTGTTCTGCACTT 57.317 29.630 0.00 0.00 0.00 3.16
485 486 9.683069 AACTATCTTTTATTTGTTCTGCACTTG 57.317 29.630 0.00 0.00 0.00 3.16
486 487 7.809806 ACTATCTTTTATTTGTTCTGCACTTGC 59.190 33.333 0.00 0.00 42.50 4.01
502 503 5.224888 GCACTTGCATATATGGTTGATTGG 58.775 41.667 14.51 0.00 41.59 3.16
503 504 5.009911 GCACTTGCATATATGGTTGATTGGA 59.990 40.000 14.51 0.00 41.59 3.53
504 505 6.294899 GCACTTGCATATATGGTTGATTGGAT 60.295 38.462 14.51 0.00 41.59 3.41
505 506 7.663827 CACTTGCATATATGGTTGATTGGATT 58.336 34.615 14.51 0.00 0.00 3.01
506 507 7.597369 CACTTGCATATATGGTTGATTGGATTG 59.403 37.037 14.51 0.00 0.00 2.67
507 508 7.288389 ACTTGCATATATGGTTGATTGGATTGT 59.712 33.333 14.51 0.00 0.00 2.71
508 509 7.600231 TGCATATATGGTTGATTGGATTGTT 57.400 32.000 14.51 0.00 0.00 2.83
509 510 8.020777 TGCATATATGGTTGATTGGATTGTTT 57.979 30.769 14.51 0.00 0.00 2.83
510 511 9.140874 TGCATATATGGTTGATTGGATTGTTTA 57.859 29.630 14.51 0.00 0.00 2.01
547 548 9.944376 TCAATGAAGGGTTGATATAAGTATAGC 57.056 33.333 0.00 0.00 31.07 2.97
548 549 9.725019 CAATGAAGGGTTGATATAAGTATAGCA 57.275 33.333 0.00 0.00 33.24 3.49
551 552 9.944376 TGAAGGGTTGATATAAGTATAGCAATC 57.056 33.333 11.11 10.52 43.66 2.67
555 556 9.088512 GGGTTGATATAAGTATAGCAATCTTCG 57.911 37.037 15.53 0.00 43.66 3.79
556 557 9.088512 GGTTGATATAAGTATAGCAATCTTCGG 57.911 37.037 11.11 0.00 43.66 4.30
557 558 9.856488 GTTGATATAAGTATAGCAATCTTCGGA 57.144 33.333 11.11 0.00 43.66 4.55
558 559 9.856488 TTGATATAAGTATAGCAATCTTCGGAC 57.144 33.333 5.19 0.00 38.99 4.79
559 560 9.244292 TGATATAAGTATAGCAATCTTCGGACT 57.756 33.333 0.00 0.00 32.26 3.85
560 561 9.509855 GATATAAGTATAGCAATCTTCGGACTG 57.490 37.037 0.00 0.00 0.00 3.51
561 562 4.592485 AGTATAGCAATCTTCGGACTGG 57.408 45.455 0.00 0.00 0.00 4.00
562 563 2.918712 ATAGCAATCTTCGGACTGGG 57.081 50.000 0.00 0.00 0.00 4.45
563 564 1.860641 TAGCAATCTTCGGACTGGGA 58.139 50.000 0.00 0.00 0.00 4.37
564 565 0.250513 AGCAATCTTCGGACTGGGAC 59.749 55.000 0.00 0.00 0.00 4.46
565 566 1.084370 GCAATCTTCGGACTGGGACG 61.084 60.000 0.00 0.00 0.00 4.79
566 567 0.246635 CAATCTTCGGACTGGGACGT 59.753 55.000 0.00 0.00 0.00 4.34
567 568 0.246635 AATCTTCGGACTGGGACGTG 59.753 55.000 0.00 0.00 0.00 4.49
568 569 0.898789 ATCTTCGGACTGGGACGTGT 60.899 55.000 0.00 0.00 0.00 4.49
569 570 1.080705 CTTCGGACTGGGACGTGTC 60.081 63.158 0.00 0.00 34.58 3.67
570 571 1.802337 CTTCGGACTGGGACGTGTCA 61.802 60.000 0.00 0.00 36.44 3.58
571 572 1.183030 TTCGGACTGGGACGTGTCAT 61.183 55.000 0.00 0.00 36.44 3.06
572 573 1.153823 CGGACTGGGACGTGTCATC 60.154 63.158 0.00 0.00 36.44 2.92
573 574 1.595993 CGGACTGGGACGTGTCATCT 61.596 60.000 0.00 0.00 36.44 2.90
574 575 0.173708 GGACTGGGACGTGTCATCTC 59.826 60.000 0.00 0.00 36.44 2.75
575 576 0.888619 GACTGGGACGTGTCATCTCA 59.111 55.000 0.00 0.00 35.22 3.27
576 577 1.478510 GACTGGGACGTGTCATCTCAT 59.521 52.381 0.00 0.00 35.22 2.90
577 578 1.478510 ACTGGGACGTGTCATCTCATC 59.521 52.381 0.00 0.00 0.00 2.92
578 579 1.478105 CTGGGACGTGTCATCTCATCA 59.522 52.381 0.00 0.00 0.00 3.07
579 580 1.204704 TGGGACGTGTCATCTCATCAC 59.795 52.381 0.00 0.00 0.00 3.06
580 581 1.204704 GGGACGTGTCATCTCATCACA 59.795 52.381 0.00 0.00 33.04 3.58
581 582 2.353704 GGGACGTGTCATCTCATCACAA 60.354 50.000 0.00 0.00 33.04 3.33
582 583 2.926200 GGACGTGTCATCTCATCACAAG 59.074 50.000 0.00 0.00 33.04 3.16
583 584 3.367395 GGACGTGTCATCTCATCACAAGA 60.367 47.826 0.00 0.00 33.04 3.02
584 585 4.428209 GACGTGTCATCTCATCACAAGAT 58.572 43.478 0.00 0.00 33.74 2.40
585 586 4.825422 ACGTGTCATCTCATCACAAGATT 58.175 39.130 0.00 0.00 31.05 2.40
586 587 5.240891 ACGTGTCATCTCATCACAAGATTT 58.759 37.500 0.00 0.00 31.05 2.17
587 588 5.702670 ACGTGTCATCTCATCACAAGATTTT 59.297 36.000 0.00 0.00 31.05 1.82
588 589 6.873605 ACGTGTCATCTCATCACAAGATTTTA 59.126 34.615 0.00 0.00 31.05 1.52
589 590 7.387673 ACGTGTCATCTCATCACAAGATTTTAA 59.612 33.333 0.00 0.00 31.05 1.52
590 591 7.901889 CGTGTCATCTCATCACAAGATTTTAAG 59.098 37.037 0.00 0.00 31.05 1.85
591 592 8.725148 GTGTCATCTCATCACAAGATTTTAAGT 58.275 33.333 0.00 0.00 31.05 2.24
592 593 9.942850 TGTCATCTCATCACAAGATTTTAAGTA 57.057 29.630 0.00 0.00 31.05 2.24
636 637 9.595357 GCGTTATAGCATCTTAGAAATAAAACC 57.405 33.333 0.00 0.00 37.05 3.27
655 656 9.969001 ATAAAACCTCTATAAAAGTAAGCCACA 57.031 29.630 0.00 0.00 0.00 4.17
656 657 7.923414 AAACCTCTATAAAAGTAAGCCACAG 57.077 36.000 0.00 0.00 0.00 3.66
657 658 5.990668 ACCTCTATAAAAGTAAGCCACAGG 58.009 41.667 0.00 0.00 0.00 4.00
658 659 5.487845 ACCTCTATAAAAGTAAGCCACAGGT 59.512 40.000 0.00 0.00 0.00 4.00
659 660 6.049790 CCTCTATAAAAGTAAGCCACAGGTC 58.950 44.000 0.00 0.00 0.00 3.85
660 661 6.351881 CCTCTATAAAAGTAAGCCACAGGTCA 60.352 42.308 0.00 0.00 0.00 4.02
661 662 7.011499 TCTATAAAAGTAAGCCACAGGTCAA 57.989 36.000 0.00 0.00 0.00 3.18
662 663 7.103641 TCTATAAAAGTAAGCCACAGGTCAAG 58.896 38.462 0.00 0.00 0.00 3.02
663 664 2.568623 AAGTAAGCCACAGGTCAAGG 57.431 50.000 0.00 0.00 0.00 3.61
664 665 0.693049 AGTAAGCCACAGGTCAAGGG 59.307 55.000 0.00 0.00 0.00 3.95
665 666 0.960861 GTAAGCCACAGGTCAAGGGC 60.961 60.000 0.00 0.00 46.77 5.19
667 668 2.674380 GCCACAGGTCAAGGGCAG 60.674 66.667 0.00 0.00 45.70 4.85
668 669 2.674380 CCACAGGTCAAGGGCAGC 60.674 66.667 0.00 0.00 0.00 5.25
669 670 2.113774 CACAGGTCAAGGGCAGCA 59.886 61.111 0.00 0.00 0.00 4.41
670 671 1.303888 CACAGGTCAAGGGCAGCAT 60.304 57.895 0.00 0.00 0.00 3.79
671 672 1.303888 ACAGGTCAAGGGCAGCATG 60.304 57.895 0.00 0.00 40.87 4.06
672 673 2.050350 CAGGTCAAGGGCAGCATGG 61.050 63.158 0.00 0.00 35.86 3.66
673 674 2.036256 GGTCAAGGGCAGCATGGT 59.964 61.111 0.00 0.00 35.86 3.55
674 675 2.345760 GGTCAAGGGCAGCATGGTG 61.346 63.158 20.52 20.52 35.86 4.17
675 676 1.604593 GTCAAGGGCAGCATGGTGT 60.605 57.895 24.73 3.67 35.86 4.16
676 677 1.153524 TCAAGGGCAGCATGGTGTT 59.846 52.632 24.73 9.83 35.86 3.32
677 678 0.895100 TCAAGGGCAGCATGGTGTTC 60.895 55.000 24.73 16.93 35.86 3.18
678 679 1.607467 AAGGGCAGCATGGTGTTCC 60.607 57.895 24.73 23.69 35.86 3.62
679 680 2.036256 GGGCAGCATGGTGTTCCT 59.964 61.111 24.73 0.00 35.86 3.36
680 681 1.607467 GGGCAGCATGGTGTTCCTT 60.607 57.895 24.73 0.00 35.86 3.36
681 682 1.187567 GGGCAGCATGGTGTTCCTTT 61.188 55.000 24.73 0.00 35.86 3.11
682 683 0.244721 GGCAGCATGGTGTTCCTTTC 59.755 55.000 24.73 7.26 35.86 2.62
683 684 0.961019 GCAGCATGGTGTTCCTTTCA 59.039 50.000 24.73 0.00 35.86 2.69
684 685 1.340889 GCAGCATGGTGTTCCTTTCAA 59.659 47.619 24.73 0.00 35.86 2.69
685 686 2.028748 GCAGCATGGTGTTCCTTTCAAT 60.029 45.455 24.73 0.00 35.86 2.57
686 687 3.581755 CAGCATGGTGTTCCTTTCAATG 58.418 45.455 16.80 0.00 34.23 2.82
687 688 3.006110 CAGCATGGTGTTCCTTTCAATGT 59.994 43.478 16.80 0.00 34.23 2.71
688 689 4.218200 CAGCATGGTGTTCCTTTCAATGTA 59.782 41.667 16.80 0.00 34.23 2.29
689 690 4.832266 AGCATGGTGTTCCTTTCAATGTAA 59.168 37.500 0.00 0.00 34.23 2.41
690 691 5.481473 AGCATGGTGTTCCTTTCAATGTAAT 59.519 36.000 0.00 0.00 34.23 1.89
691 692 6.663093 AGCATGGTGTTCCTTTCAATGTAATA 59.337 34.615 0.00 0.00 34.23 0.98
692 693 6.974622 GCATGGTGTTCCTTTCAATGTAATAG 59.025 38.462 0.00 0.00 34.23 1.73
693 694 6.509418 TGGTGTTCCTTTCAATGTAATAGC 57.491 37.500 0.00 0.00 34.23 2.97
694 695 6.007076 TGGTGTTCCTTTCAATGTAATAGCA 58.993 36.000 0.00 0.00 34.23 3.49
695 696 6.663093 TGGTGTTCCTTTCAATGTAATAGCAT 59.337 34.615 0.00 0.00 34.23 3.79
696 697 6.974622 GGTGTTCCTTTCAATGTAATAGCATG 59.025 38.462 0.00 0.00 0.00 4.06
697 698 7.148086 GGTGTTCCTTTCAATGTAATAGCATGA 60.148 37.037 0.00 0.00 0.00 3.07
698 699 8.408601 GTGTTCCTTTCAATGTAATAGCATGAT 58.591 33.333 0.00 0.00 0.00 2.45
699 700 8.407832 TGTTCCTTTCAATGTAATAGCATGATG 58.592 33.333 0.00 0.00 0.00 3.07
700 701 8.623903 GTTCCTTTCAATGTAATAGCATGATGA 58.376 33.333 0.00 0.00 0.00 2.92
701 702 8.750515 TCCTTTCAATGTAATAGCATGATGAA 57.249 30.769 0.00 0.00 0.00 2.57
702 703 9.187996 TCCTTTCAATGTAATAGCATGATGAAA 57.812 29.630 0.00 0.00 35.22 2.69
703 704 9.976511 CCTTTCAATGTAATAGCATGATGAAAT 57.023 29.630 0.00 0.00 36.17 2.17
728 729 9.840427 ATATATACACTTTCACAACAAAGCAAC 57.160 29.630 0.00 0.00 36.93 4.17
729 730 4.519540 ACACTTTCACAACAAAGCAACT 57.480 36.364 0.00 0.00 36.93 3.16
730 731 4.485163 ACACTTTCACAACAAAGCAACTC 58.515 39.130 0.00 0.00 36.93 3.01
731 732 4.218417 ACACTTTCACAACAAAGCAACTCT 59.782 37.500 0.00 0.00 36.93 3.24
732 733 5.163513 CACTTTCACAACAAAGCAACTCTT 58.836 37.500 0.00 0.00 36.93 2.85
733 734 5.061311 CACTTTCACAACAAAGCAACTCTTG 59.939 40.000 0.00 0.00 36.93 3.02
734 735 5.048083 ACTTTCACAACAAAGCAACTCTTGA 60.048 36.000 0.00 0.00 36.93 3.02
735 736 5.581126 TTCACAACAAAGCAACTCTTGAT 57.419 34.783 0.00 0.00 34.67 2.57
736 737 5.173774 TCACAACAAAGCAACTCTTGATC 57.826 39.130 0.00 0.00 34.67 2.92
737 738 4.883585 TCACAACAAAGCAACTCTTGATCT 59.116 37.500 0.00 0.00 34.67 2.75
738 739 6.054941 TCACAACAAAGCAACTCTTGATCTA 58.945 36.000 0.00 0.00 34.67 1.98
739 740 6.017934 TCACAACAAAGCAACTCTTGATCTAC 60.018 38.462 0.00 0.00 34.67 2.59
740 741 5.239525 ACAACAAAGCAACTCTTGATCTACC 59.760 40.000 0.00 0.00 34.67 3.18
741 742 4.973168 ACAAAGCAACTCTTGATCTACCA 58.027 39.130 0.00 0.00 34.67 3.25
742 743 5.564550 ACAAAGCAACTCTTGATCTACCAT 58.435 37.500 0.00 0.00 34.67 3.55
743 744 6.006449 ACAAAGCAACTCTTGATCTACCATT 58.994 36.000 0.00 0.00 34.67 3.16
744 745 6.491403 ACAAAGCAACTCTTGATCTACCATTT 59.509 34.615 0.00 0.00 34.67 2.32
745 746 7.014615 ACAAAGCAACTCTTGATCTACCATTTT 59.985 33.333 0.00 0.00 34.67 1.82
746 747 6.506500 AGCAACTCTTGATCTACCATTTTG 57.493 37.500 0.00 0.00 0.00 2.44
747 748 6.240894 AGCAACTCTTGATCTACCATTTTGA 58.759 36.000 0.00 0.00 0.00 2.69
748 749 6.150140 AGCAACTCTTGATCTACCATTTTGAC 59.850 38.462 0.00 0.00 0.00 3.18
749 750 6.072508 GCAACTCTTGATCTACCATTTTGACA 60.073 38.462 0.00 0.00 0.00 3.58
750 751 7.522073 GCAACTCTTGATCTACCATTTTGACAA 60.522 37.037 0.00 0.00 0.00 3.18
751 752 8.352201 CAACTCTTGATCTACCATTTTGACAAA 58.648 33.333 0.00 0.00 0.00 2.83
752 753 7.875971 ACTCTTGATCTACCATTTTGACAAAC 58.124 34.615 0.00 0.00 0.00 2.93
753 754 7.040409 ACTCTTGATCTACCATTTTGACAAACC 60.040 37.037 0.00 0.00 0.00 3.27
754 755 6.775142 TCTTGATCTACCATTTTGACAAACCA 59.225 34.615 0.00 0.00 0.00 3.67
755 756 6.968263 TGATCTACCATTTTGACAAACCAA 57.032 33.333 0.00 0.00 0.00 3.67
756 757 7.353414 TGATCTACCATTTTGACAAACCAAA 57.647 32.000 0.00 0.00 34.56 3.28
757 758 7.961351 TGATCTACCATTTTGACAAACCAAAT 58.039 30.769 0.00 0.00 36.12 2.32
758 759 8.428063 TGATCTACCATTTTGACAAACCAAATT 58.572 29.630 0.00 0.00 36.12 1.82
759 760 8.606040 ATCTACCATTTTGACAAACCAAATTG 57.394 30.769 0.00 0.00 37.25 2.32
760 761 7.560368 TCTACCATTTTGACAAACCAAATTGT 58.440 30.769 0.00 0.00 45.82 2.71
761 762 8.696374 TCTACCATTTTGACAAACCAAATTGTA 58.304 29.630 0.00 0.00 43.31 2.41
762 763 7.784633 ACCATTTTGACAAACCAAATTGTAG 57.215 32.000 0.00 0.00 43.31 2.74
763 764 7.560368 ACCATTTTGACAAACCAAATTGTAGA 58.440 30.769 0.00 0.00 43.31 2.59
764 765 7.710475 ACCATTTTGACAAACCAAATTGTAGAG 59.290 33.333 0.00 0.00 43.31 2.43
765 766 7.925483 CCATTTTGACAAACCAAATTGTAGAGA 59.075 33.333 0.00 0.00 43.31 3.10
766 767 8.755018 CATTTTGACAAACCAAATTGTAGAGAC 58.245 33.333 0.00 0.00 43.31 3.36
767 768 7.639113 TTTGACAAACCAAATTGTAGAGACT 57.361 32.000 0.00 0.00 43.31 3.24
768 769 8.740123 TTTGACAAACCAAATTGTAGAGACTA 57.260 30.769 0.00 0.00 43.31 2.59
769 770 8.740123 TTGACAAACCAAATTGTAGAGACTAA 57.260 30.769 0.00 0.00 43.31 2.24
770 771 8.918202 TGACAAACCAAATTGTAGAGACTAAT 57.082 30.769 0.00 0.00 43.31 1.73
771 772 9.349713 TGACAAACCAAATTGTAGAGACTAATT 57.650 29.630 0.00 0.00 43.31 1.40
782 783 1.918609 GAGACTAATTGCGGACACGAC 59.081 52.381 0.00 0.00 44.60 4.34
908 929 2.237066 CGAACACACACAGCGAGCA 61.237 57.895 0.00 0.00 0.00 4.26
920 941 7.169140 CACACACAGCGAGCAACTATAAATATA 59.831 37.037 0.00 0.00 0.00 0.86
1246 1410 3.441290 CTTCGTCGTCGGAGGGCT 61.441 66.667 2.11 0.00 38.87 5.19
1288 1452 1.729470 CTCCGTCGAGAGGTGGGATG 61.729 65.000 6.74 0.00 38.52 3.51
1319 1483 1.847798 TACAAGAAGCCCCGCACCAT 61.848 55.000 0.00 0.00 0.00 3.55
1399 1726 1.154580 GACAGCAAGAAACTCGCGC 60.155 57.895 0.00 0.00 0.00 6.86
1546 1904 1.219393 GCTGCCTCGGACTAAAGCT 59.781 57.895 0.00 0.00 0.00 3.74
1586 1947 1.954146 GCAACGACACCGCAGAAGA 60.954 57.895 0.00 0.00 39.95 2.87
1738 2139 3.762288 TCGTCAGGAGTAGTGCTGTATTT 59.238 43.478 17.54 0.00 42.60 1.40
1756 2165 7.417116 GCTGTATTTGGATGTGGAATTCAATCT 60.417 37.037 7.93 0.00 0.00 2.40
1821 2241 2.448926 TCGGACTCGAAAGCATTTGA 57.551 45.000 0.00 0.00 43.03 2.69
1835 2255 2.286654 GCATTTGAGCGATGCTACTTCC 60.287 50.000 9.22 0.00 44.92 3.46
1940 2599 6.899393 TGCAACTTAATTTCCTCATCTTGT 57.101 33.333 0.00 0.00 0.00 3.16
1942 2603 7.725251 TGCAACTTAATTTCCTCATCTTGTTT 58.275 30.769 0.00 0.00 0.00 2.83
2021 2717 6.016693 ACACGATGGACAAATTTTCATACACA 60.017 34.615 0.00 0.00 0.00 3.72
2031 2727 8.140628 ACAAATTTTCATACACAGTGCACATTA 58.859 29.630 21.04 4.42 0.00 1.90
2033 2729 4.944962 TTCATACACAGTGCACATTAGC 57.055 40.909 21.04 0.00 0.00 3.09
2494 3208 6.215121 TGCACATTTGTTAAAGACATGAAGG 58.785 36.000 0.00 0.00 38.26 3.46
2497 3212 7.115378 GCACATTTGTTAAAGACATGAAGGAAG 59.885 37.037 0.00 0.00 38.26 3.46
2508 3223 7.073342 AGACATGAAGGAAGTTTTAATACGC 57.927 36.000 0.00 0.00 0.00 4.42
2688 3404 9.669887 TTATACGCGGGGAAATATTGTTAATAT 57.330 29.630 12.47 0.00 35.64 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.435685 CGATTTTGATCGGACCAACG 57.564 50.000 1.08 0.00 40.12 4.10
18 19 9.703892 TGTTCAATTTTGGATTTGATTTACGAT 57.296 25.926 0.00 0.00 32.27 3.73
19 20 8.973378 GTGTTCAATTTTGGATTTGATTTACGA 58.027 29.630 0.00 0.00 32.27 3.43
20 21 8.220434 GGTGTTCAATTTTGGATTTGATTTACG 58.780 33.333 0.00 0.00 32.27 3.18
21 22 9.271828 AGGTGTTCAATTTTGGATTTGATTTAC 57.728 29.630 0.00 0.00 32.27 2.01
22 23 9.487790 GAGGTGTTCAATTTTGGATTTGATTTA 57.512 29.630 0.00 0.00 32.27 1.40
23 24 7.992033 TGAGGTGTTCAATTTTGGATTTGATTT 59.008 29.630 0.00 0.00 32.27 2.17
24 25 7.507829 TGAGGTGTTCAATTTTGGATTTGATT 58.492 30.769 0.00 0.00 32.27 2.57
25 26 7.065120 TGAGGTGTTCAATTTTGGATTTGAT 57.935 32.000 0.00 0.00 32.27 2.57
26 27 6.477053 TGAGGTGTTCAATTTTGGATTTGA 57.523 33.333 0.00 0.00 31.34 2.69
39 40 4.819088 TGTTTCATTCGATTGAGGTGTTCA 59.181 37.500 9.71 3.33 0.00 3.18
40 41 5.356882 TGTTTCATTCGATTGAGGTGTTC 57.643 39.130 9.71 1.27 0.00 3.18
41 42 5.299279 AGTTGTTTCATTCGATTGAGGTGTT 59.701 36.000 9.71 0.00 0.00 3.32
42 43 4.821805 AGTTGTTTCATTCGATTGAGGTGT 59.178 37.500 9.71 0.00 0.00 4.16
43 44 5.362556 AGTTGTTTCATTCGATTGAGGTG 57.637 39.130 9.71 0.00 0.00 4.00
44 45 6.391227 AAAGTTGTTTCATTCGATTGAGGT 57.609 33.333 9.71 0.00 0.00 3.85
45 46 8.795786 TTTAAAGTTGTTTCATTCGATTGAGG 57.204 30.769 9.71 0.00 0.00 3.86
51 52 9.685828 CCCTAATTTTAAAGTTGTTTCATTCGA 57.314 29.630 6.23 0.00 0.00 3.71
52 53 9.685828 TCCCTAATTTTAAAGTTGTTTCATTCG 57.314 29.630 6.23 0.00 0.00 3.34
91 92 9.479549 TCAAGGGCTCTCTCATTTAATTATTTT 57.520 29.630 0.00 0.00 0.00 1.82
92 93 9.129532 CTCAAGGGCTCTCTCATTTAATTATTT 57.870 33.333 0.00 0.00 0.00 1.40
93 94 8.497745 TCTCAAGGGCTCTCTCATTTAATTATT 58.502 33.333 0.00 0.00 0.00 1.40
94 95 8.038862 TCTCAAGGGCTCTCTCATTTAATTAT 57.961 34.615 0.00 0.00 0.00 1.28
95 96 7.437713 TCTCAAGGGCTCTCTCATTTAATTA 57.562 36.000 0.00 0.00 0.00 1.40
96 97 6.319048 TCTCAAGGGCTCTCTCATTTAATT 57.681 37.500 0.00 0.00 0.00 1.40
97 98 5.965033 TCTCAAGGGCTCTCTCATTTAAT 57.035 39.130 0.00 0.00 0.00 1.40
98 99 5.762179 TTCTCAAGGGCTCTCTCATTTAA 57.238 39.130 0.00 0.00 0.00 1.52
99 100 5.762179 TTTCTCAAGGGCTCTCTCATTTA 57.238 39.130 0.00 0.00 0.00 1.40
100 101 4.647564 TTTCTCAAGGGCTCTCTCATTT 57.352 40.909 0.00 0.00 0.00 2.32
101 102 4.858965 ATTTCTCAAGGGCTCTCTCATT 57.141 40.909 0.00 0.00 0.00 2.57
102 103 4.858965 AATTTCTCAAGGGCTCTCTCAT 57.141 40.909 0.00 0.00 0.00 2.90
103 104 5.965033 ATAATTTCTCAAGGGCTCTCTCA 57.035 39.130 0.00 0.00 0.00 3.27
104 105 6.259829 GTCAATAATTTCTCAAGGGCTCTCTC 59.740 42.308 0.00 0.00 0.00 3.20
105 106 6.118852 GTCAATAATTTCTCAAGGGCTCTCT 58.881 40.000 0.00 0.00 0.00 3.10
106 107 5.298026 GGTCAATAATTTCTCAAGGGCTCTC 59.702 44.000 0.00 0.00 0.00 3.20
107 108 5.196695 GGTCAATAATTTCTCAAGGGCTCT 58.803 41.667 0.00 0.00 0.00 4.09
108 109 4.339530 GGGTCAATAATTTCTCAAGGGCTC 59.660 45.833 0.00 0.00 0.00 4.70
109 110 4.264352 TGGGTCAATAATTTCTCAAGGGCT 60.264 41.667 0.00 0.00 0.00 5.19
110 111 4.023291 TGGGTCAATAATTTCTCAAGGGC 58.977 43.478 0.00 0.00 0.00 5.19
111 112 5.264395 ACTGGGTCAATAATTTCTCAAGGG 58.736 41.667 0.00 0.00 0.00 3.95
112 113 5.945784 TGACTGGGTCAATAATTTCTCAAGG 59.054 40.000 0.00 0.00 39.78 3.61
113 114 7.452880 TTGACTGGGTCAATAATTTCTCAAG 57.547 36.000 8.75 0.00 45.88 3.02
126 127 5.318630 GGTAACCTAATTTTGACTGGGTCA 58.681 41.667 0.00 0.00 41.09 4.02
127 128 5.892160 GGTAACCTAATTTTGACTGGGTC 57.108 43.478 0.00 0.00 0.00 4.46
144 145 8.208903 TGAGGCTATAGTTTAGAATTGGGTAAC 58.791 37.037 0.84 0.00 0.00 2.50
145 146 8.326765 TGAGGCTATAGTTTAGAATTGGGTAA 57.673 34.615 0.84 0.00 0.00 2.85
146 147 7.567622 ACTGAGGCTATAGTTTAGAATTGGGTA 59.432 37.037 0.84 0.00 0.00 3.69
147 148 6.387220 ACTGAGGCTATAGTTTAGAATTGGGT 59.613 38.462 0.84 0.00 0.00 4.51
148 149 6.831976 ACTGAGGCTATAGTTTAGAATTGGG 58.168 40.000 0.84 0.00 0.00 4.12
149 150 9.832445 TTAACTGAGGCTATAGTTTAGAATTGG 57.168 33.333 18.20 0.00 38.11 3.16
154 155 9.817809 CACAATTAACTGAGGCTATAGTTTAGA 57.182 33.333 18.20 8.58 38.11 2.10
155 156 9.817809 TCACAATTAACTGAGGCTATAGTTTAG 57.182 33.333 18.20 10.50 38.11 1.85
157 158 9.515226 TTTCACAATTAACTGAGGCTATAGTTT 57.485 29.630 18.20 3.15 38.11 2.66
158 159 9.515226 TTTTCACAATTAACTGAGGCTATAGTT 57.485 29.630 17.42 17.42 40.09 2.24
159 160 9.686683 ATTTTCACAATTAACTGAGGCTATAGT 57.313 29.630 0.84 0.00 0.00 2.12
223 224 9.150348 GGTCAAAAATTTCTCAAAACTCTTTCA 57.850 29.630 0.00 0.00 0.00 2.69
224 225 8.321005 CGGTCAAAAATTTCTCAAAACTCTTTC 58.679 33.333 0.00 0.00 0.00 2.62
225 226 7.277760 CCGGTCAAAAATTTCTCAAAACTCTTT 59.722 33.333 0.00 0.00 0.00 2.52
226 227 6.756542 CCGGTCAAAAATTTCTCAAAACTCTT 59.243 34.615 0.00 0.00 0.00 2.85
227 228 6.127451 ACCGGTCAAAAATTTCTCAAAACTCT 60.127 34.615 0.00 0.00 0.00 3.24
228 229 6.040247 ACCGGTCAAAAATTTCTCAAAACTC 58.960 36.000 0.00 0.00 0.00 3.01
229 230 5.972935 ACCGGTCAAAAATTTCTCAAAACT 58.027 33.333 0.00 0.00 0.00 2.66
230 231 5.808030 TGACCGGTCAAAAATTTCTCAAAAC 59.192 36.000 34.60 2.28 36.53 2.43
231 232 5.967088 TGACCGGTCAAAAATTTCTCAAAA 58.033 33.333 34.60 5.35 36.53 2.44
232 233 5.584253 TGACCGGTCAAAAATTTCTCAAA 57.416 34.783 34.60 6.08 36.53 2.69
233 234 5.584253 TTGACCGGTCAAAAATTTCTCAA 57.416 34.783 40.69 19.02 45.56 3.02
244 245 1.683917 CACCCAATTTTGACCGGTCAA 59.316 47.619 39.59 39.59 46.72 3.18
245 246 1.133761 TCACCCAATTTTGACCGGTCA 60.134 47.619 33.23 33.23 37.91 4.02
246 247 1.268625 GTCACCCAATTTTGACCGGTC 59.731 52.381 28.17 28.17 36.85 4.79
247 248 1.324383 GTCACCCAATTTTGACCGGT 58.676 50.000 6.92 6.92 36.85 5.28
260 261 3.954258 CTCTAATTGGGATTTGGTCACCC 59.046 47.826 0.00 0.00 43.51 4.61
261 262 4.640647 GTCTCTAATTGGGATTTGGTCACC 59.359 45.833 0.00 0.00 0.00 4.02
262 263 4.640647 GGTCTCTAATTGGGATTTGGTCAC 59.359 45.833 0.00 0.00 0.00 3.67
263 264 4.540099 AGGTCTCTAATTGGGATTTGGTCA 59.460 41.667 0.00 0.00 0.00 4.02
264 265 5.117406 AGGTCTCTAATTGGGATTTGGTC 57.883 43.478 0.00 0.00 0.00 4.02
265 266 4.540099 TGAGGTCTCTAATTGGGATTTGGT 59.460 41.667 0.00 0.00 0.00 3.67
266 267 5.116084 TGAGGTCTCTAATTGGGATTTGG 57.884 43.478 0.00 0.00 0.00 3.28
267 268 7.340232 TCAATTGAGGTCTCTAATTGGGATTTG 59.660 37.037 21.32 7.98 37.92 2.32
268 269 7.413446 TCAATTGAGGTCTCTAATTGGGATTT 58.587 34.615 21.32 0.00 37.92 2.17
269 270 6.973642 TCAATTGAGGTCTCTAATTGGGATT 58.026 36.000 21.32 0.00 37.92 3.01
270 271 6.581388 TCAATTGAGGTCTCTAATTGGGAT 57.419 37.500 21.32 0.00 37.92 3.85
271 272 6.581388 ATCAATTGAGGTCTCTAATTGGGA 57.419 37.500 14.54 12.47 37.92 4.37
272 273 6.604795 ACAATCAATTGAGGTCTCTAATTGGG 59.395 38.462 14.54 16.95 40.14 4.12
273 274 7.337689 TCACAATCAATTGAGGTCTCTAATTGG 59.662 37.037 14.54 14.49 40.14 3.16
274 275 8.272545 TCACAATCAATTGAGGTCTCTAATTG 57.727 34.615 14.54 11.76 40.14 2.32
275 276 8.503458 CTCACAATCAATTGAGGTCTCTAATT 57.497 34.615 14.54 0.00 40.14 1.40
285 286 2.686915 GGAGGCCTCACAATCAATTGAG 59.313 50.000 33.29 3.71 40.14 3.02
286 287 2.041485 TGGAGGCCTCACAATCAATTGA 59.959 45.455 33.29 11.26 40.14 2.57
287 288 2.449464 TGGAGGCCTCACAATCAATTG 58.551 47.619 33.29 0.00 43.26 2.32
288 289 2.905415 TGGAGGCCTCACAATCAATT 57.095 45.000 33.29 0.00 0.00 2.32
289 290 2.905415 TTGGAGGCCTCACAATCAAT 57.095 45.000 33.29 0.00 0.00 2.57
290 291 2.621407 GGATTGGAGGCCTCACAATCAA 60.621 50.000 40.98 32.72 42.44 2.57
291 292 1.064463 GGATTGGAGGCCTCACAATCA 60.064 52.381 40.98 28.78 42.44 2.57
292 293 1.213926 AGGATTGGAGGCCTCACAATC 59.786 52.381 37.90 37.90 41.36 2.67
293 294 1.302907 AGGATTGGAGGCCTCACAAT 58.697 50.000 32.50 32.50 35.06 2.71
294 295 1.839994 CTAGGATTGGAGGCCTCACAA 59.160 52.381 33.29 30.22 35.73 3.33
295 296 1.500474 CTAGGATTGGAGGCCTCACA 58.500 55.000 33.29 24.54 35.73 3.58
296 297 0.761802 CCTAGGATTGGAGGCCTCAC 59.238 60.000 33.29 22.31 35.73 3.51
297 298 0.400525 CCCTAGGATTGGAGGCCTCA 60.401 60.000 33.29 15.46 35.73 3.86
298 299 0.104934 TCCCTAGGATTGGAGGCCTC 60.105 60.000 25.59 25.59 35.73 4.70
299 300 0.104725 CTCCCTAGGATTGGAGGCCT 60.105 60.000 11.48 3.86 43.69 5.19
300 301 1.773856 GCTCCCTAGGATTGGAGGCC 61.774 65.000 11.48 0.00 46.79 5.19
301 302 0.766288 AGCTCCCTAGGATTGGAGGC 60.766 60.000 11.48 4.95 46.79 4.70
302 303 1.813102 AAGCTCCCTAGGATTGGAGG 58.187 55.000 11.48 0.00 46.79 4.30
304 305 3.708236 ACTAAGCTCCCTAGGATTGGA 57.292 47.619 11.48 0.00 0.00 3.53
305 306 7.741554 ATATTACTAAGCTCCCTAGGATTGG 57.258 40.000 11.48 4.23 0.00 3.16
306 307 9.482175 ACTATATTACTAAGCTCCCTAGGATTG 57.518 37.037 11.48 0.49 0.00 2.67
330 331 9.841295 TGACATGCATGCATATTATCATATACT 57.159 29.630 31.73 3.67 34.91 2.12
331 332 9.874215 GTGACATGCATGCATATTATCATATAC 57.126 33.333 31.73 15.94 34.91 1.47
332 333 9.841295 AGTGACATGCATGCATATTATCATATA 57.159 29.630 31.73 9.31 34.91 0.86
333 334 8.747538 AGTGACATGCATGCATATTATCATAT 57.252 30.769 31.73 19.75 34.91 1.78
334 335 8.570068 AAGTGACATGCATGCATATTATCATA 57.430 30.769 31.73 10.45 34.91 2.15
335 336 7.462571 AAGTGACATGCATGCATATTATCAT 57.537 32.000 31.73 15.51 34.91 2.45
336 337 6.887626 AAGTGACATGCATGCATATTATCA 57.112 33.333 31.73 26.08 34.91 2.15
337 338 6.584942 CCAAAGTGACATGCATGCATATTATC 59.415 38.462 31.73 24.14 34.91 1.75
338 339 6.265876 TCCAAAGTGACATGCATGCATATTAT 59.734 34.615 31.73 17.71 34.91 1.28
339 340 5.593502 TCCAAAGTGACATGCATGCATATTA 59.406 36.000 31.73 16.49 34.91 0.98
340 341 4.403113 TCCAAAGTGACATGCATGCATATT 59.597 37.500 31.73 21.62 34.91 1.28
341 342 3.955551 TCCAAAGTGACATGCATGCATAT 59.044 39.130 31.73 23.10 34.91 1.78
342 343 3.354467 TCCAAAGTGACATGCATGCATA 58.646 40.909 31.73 15.14 34.91 3.14
343 344 2.165641 CTCCAAAGTGACATGCATGCAT 59.834 45.455 27.46 27.46 37.08 3.96
344 345 1.542472 CTCCAAAGTGACATGCATGCA 59.458 47.619 26.53 25.04 0.00 3.96
345 346 1.135199 CCTCCAAAGTGACATGCATGC 60.135 52.381 26.53 18.59 0.00 4.06
346 347 2.439409 TCCTCCAAAGTGACATGCATG 58.561 47.619 25.09 25.09 0.00 4.06
347 348 2.885135 TCCTCCAAAGTGACATGCAT 57.115 45.000 0.00 0.00 0.00 3.96
348 349 2.507484 CTTCCTCCAAAGTGACATGCA 58.493 47.619 0.00 0.00 0.00 3.96
349 350 1.815003 CCTTCCTCCAAAGTGACATGC 59.185 52.381 0.00 0.00 0.00 4.06
350 351 3.423539 TCCTTCCTCCAAAGTGACATG 57.576 47.619 0.00 0.00 0.00 3.21
351 352 4.785376 AGTATCCTTCCTCCAAAGTGACAT 59.215 41.667 0.00 0.00 0.00 3.06
352 353 4.168101 AGTATCCTTCCTCCAAAGTGACA 58.832 43.478 0.00 0.00 0.00 3.58
353 354 4.828072 AGTATCCTTCCTCCAAAGTGAC 57.172 45.455 0.00 0.00 0.00 3.67
354 355 5.783360 TGTAAGTATCCTTCCTCCAAAGTGA 59.217 40.000 0.00 0.00 31.89 3.41
355 356 6.049955 TGTAAGTATCCTTCCTCCAAAGTG 57.950 41.667 0.00 0.00 31.89 3.16
356 357 6.272558 ACTTGTAAGTATCCTTCCTCCAAAGT 59.727 38.462 0.00 0.00 37.52 2.66
357 358 6.712276 ACTTGTAAGTATCCTTCCTCCAAAG 58.288 40.000 0.00 0.00 37.52 2.77
358 359 6.697641 ACTTGTAAGTATCCTTCCTCCAAA 57.302 37.500 0.00 0.00 37.52 3.28
359 360 6.271391 TGAACTTGTAAGTATCCTTCCTCCAA 59.729 38.462 0.00 0.00 38.57 3.53
360 361 5.783360 TGAACTTGTAAGTATCCTTCCTCCA 59.217 40.000 0.00 0.00 38.57 3.86
361 362 6.295719 TGAACTTGTAAGTATCCTTCCTCC 57.704 41.667 0.00 0.00 38.57 4.30
362 363 6.342111 CCTGAACTTGTAAGTATCCTTCCTC 58.658 44.000 0.00 0.00 38.57 3.71
363 364 5.189934 CCCTGAACTTGTAAGTATCCTTCCT 59.810 44.000 0.00 0.00 38.57 3.36
364 365 5.189145 TCCCTGAACTTGTAAGTATCCTTCC 59.811 44.000 0.00 0.00 38.57 3.46
365 366 6.295719 TCCCTGAACTTGTAAGTATCCTTC 57.704 41.667 0.00 0.00 38.57 3.46
366 367 5.189934 CCTCCCTGAACTTGTAAGTATCCTT 59.810 44.000 0.00 0.00 38.57 3.36
367 368 4.717280 CCTCCCTGAACTTGTAAGTATCCT 59.283 45.833 0.00 0.00 38.57 3.24
368 369 4.715297 TCCTCCCTGAACTTGTAAGTATCC 59.285 45.833 0.00 0.00 38.57 2.59
369 370 5.187186 TGTCCTCCCTGAACTTGTAAGTATC 59.813 44.000 0.00 0.12 38.57 2.24
370 371 5.091552 TGTCCTCCCTGAACTTGTAAGTAT 58.908 41.667 0.00 0.00 38.57 2.12
371 372 4.485875 TGTCCTCCCTGAACTTGTAAGTA 58.514 43.478 0.00 0.00 38.57 2.24
372 373 3.314693 TGTCCTCCCTGAACTTGTAAGT 58.685 45.455 0.00 0.00 42.04 2.24
373 374 4.256920 CATGTCCTCCCTGAACTTGTAAG 58.743 47.826 0.00 0.00 0.00 2.34
374 375 3.009033 CCATGTCCTCCCTGAACTTGTAA 59.991 47.826 0.00 0.00 0.00 2.41
375 376 2.571653 CCATGTCCTCCCTGAACTTGTA 59.428 50.000 0.00 0.00 0.00 2.41
376 377 1.352352 CCATGTCCTCCCTGAACTTGT 59.648 52.381 0.00 0.00 0.00 3.16
377 378 1.952367 GCCATGTCCTCCCTGAACTTG 60.952 57.143 0.00 0.00 0.00 3.16
378 379 0.329596 GCCATGTCCTCCCTGAACTT 59.670 55.000 0.00 0.00 0.00 2.66
379 380 1.903877 CGCCATGTCCTCCCTGAACT 61.904 60.000 0.00 0.00 0.00 3.01
380 381 1.450312 CGCCATGTCCTCCCTGAAC 60.450 63.158 0.00 0.00 0.00 3.18
381 382 1.612146 TCGCCATGTCCTCCCTGAA 60.612 57.895 0.00 0.00 0.00 3.02
382 383 2.038813 TCGCCATGTCCTCCCTGA 59.961 61.111 0.00 0.00 0.00 3.86
383 384 1.617018 TTCTCGCCATGTCCTCCCTG 61.617 60.000 0.00 0.00 0.00 4.45
384 385 0.909610 TTTCTCGCCATGTCCTCCCT 60.910 55.000 0.00 0.00 0.00 4.20
385 386 0.181350 ATTTCTCGCCATGTCCTCCC 59.819 55.000 0.00 0.00 0.00 4.30
386 387 2.760374 CTATTTCTCGCCATGTCCTCC 58.240 52.381 0.00 0.00 0.00 4.30
387 388 2.139118 GCTATTTCTCGCCATGTCCTC 58.861 52.381 0.00 0.00 0.00 3.71
388 389 1.486310 TGCTATTTCTCGCCATGTCCT 59.514 47.619 0.00 0.00 0.00 3.85
389 390 1.953559 TGCTATTTCTCGCCATGTCC 58.046 50.000 0.00 0.00 0.00 4.02
390 391 4.094887 TCTTTTGCTATTTCTCGCCATGTC 59.905 41.667 0.00 0.00 0.00 3.06
391 392 4.009675 TCTTTTGCTATTTCTCGCCATGT 58.990 39.130 0.00 0.00 0.00 3.21
392 393 4.142622 TGTCTTTTGCTATTTCTCGCCATG 60.143 41.667 0.00 0.00 0.00 3.66
393 394 4.009675 TGTCTTTTGCTATTTCTCGCCAT 58.990 39.130 0.00 0.00 0.00 4.40
394 395 3.407698 TGTCTTTTGCTATTTCTCGCCA 58.592 40.909 0.00 0.00 0.00 5.69
395 396 4.094887 TCATGTCTTTTGCTATTTCTCGCC 59.905 41.667 0.00 0.00 0.00 5.54
396 397 5.024555 GTCATGTCTTTTGCTATTTCTCGC 58.975 41.667 0.00 0.00 0.00 5.03
397 398 6.169419 TGTCATGTCTTTTGCTATTTCTCG 57.831 37.500 0.00 0.00 0.00 4.04
398 399 7.699812 GGATTGTCATGTCTTTTGCTATTTCTC 59.300 37.037 0.00 0.00 0.00 2.87
399 400 7.177216 TGGATTGTCATGTCTTTTGCTATTTCT 59.823 33.333 0.00 0.00 0.00 2.52
400 401 7.315142 TGGATTGTCATGTCTTTTGCTATTTC 58.685 34.615 0.00 0.00 0.00 2.17
401 402 7.230849 TGGATTGTCATGTCTTTTGCTATTT 57.769 32.000 0.00 0.00 0.00 1.40
402 403 6.839124 TGGATTGTCATGTCTTTTGCTATT 57.161 33.333 0.00 0.00 0.00 1.73
403 404 6.626623 GCTTGGATTGTCATGTCTTTTGCTAT 60.627 38.462 0.00 0.00 0.00 2.97
404 405 5.335897 GCTTGGATTGTCATGTCTTTTGCTA 60.336 40.000 0.00 0.00 0.00 3.49
405 406 4.560108 GCTTGGATTGTCATGTCTTTTGCT 60.560 41.667 0.00 0.00 0.00 3.91
406 407 3.676646 GCTTGGATTGTCATGTCTTTTGC 59.323 43.478 0.00 0.00 0.00 3.68
407 408 5.130292 AGCTTGGATTGTCATGTCTTTTG 57.870 39.130 0.00 0.00 0.00 2.44
408 409 5.796424 AAGCTTGGATTGTCATGTCTTTT 57.204 34.783 0.00 0.00 0.00 2.27
409 410 5.106555 CGTAAGCTTGGATTGTCATGTCTTT 60.107 40.000 9.86 0.00 0.00 2.52
410 411 4.393062 CGTAAGCTTGGATTGTCATGTCTT 59.607 41.667 9.86 0.00 0.00 3.01
411 412 3.935203 CGTAAGCTTGGATTGTCATGTCT 59.065 43.478 9.86 0.00 0.00 3.41
412 413 3.684788 ACGTAAGCTTGGATTGTCATGTC 59.315 43.478 9.86 0.00 45.62 3.06
413 414 3.674997 ACGTAAGCTTGGATTGTCATGT 58.325 40.909 9.86 0.00 45.62 3.21
414 415 5.794687 TTACGTAAGCTTGGATTGTCATG 57.205 39.130 9.86 0.00 45.62 3.07
415 416 7.094377 ACAAATTACGTAAGCTTGGATTGTCAT 60.094 33.333 25.14 8.92 45.62 3.06
416 417 6.205853 ACAAATTACGTAAGCTTGGATTGTCA 59.794 34.615 25.14 0.00 45.62 3.58
417 418 6.608610 ACAAATTACGTAAGCTTGGATTGTC 58.391 36.000 25.14 0.00 45.62 3.18
418 419 6.205853 TGACAAATTACGTAAGCTTGGATTGT 59.794 34.615 25.14 19.23 45.62 2.71
419 420 6.607689 TGACAAATTACGTAAGCTTGGATTG 58.392 36.000 25.14 17.22 45.62 2.67
420 421 6.811253 TGACAAATTACGTAAGCTTGGATT 57.189 33.333 25.14 12.66 45.62 3.01
421 422 6.811253 TTGACAAATTACGTAAGCTTGGAT 57.189 33.333 25.14 13.16 45.62 3.41
422 423 6.621316 TTTGACAAATTACGTAAGCTTGGA 57.379 33.333 25.14 14.94 45.62 3.53
423 424 7.593273 TCAATTTGACAAATTACGTAAGCTTGG 59.407 33.333 22.46 13.38 38.97 3.61
424 425 8.500837 TCAATTTGACAAATTACGTAAGCTTG 57.499 30.769 22.46 22.16 38.97 4.01
425 426 8.964150 GTTCAATTTGACAAATTACGTAAGCTT 58.036 29.630 22.46 3.48 38.97 3.74
426 427 8.132362 TGTTCAATTTGACAAATTACGTAAGCT 58.868 29.630 22.46 0.47 38.97 3.74
427 428 8.276060 TGTTCAATTTGACAAATTACGTAAGC 57.724 30.769 22.46 11.14 38.97 3.09
428 429 8.901748 CCTGTTCAATTTGACAAATTACGTAAG 58.098 33.333 22.46 16.09 38.97 2.34
429 430 7.380065 GCCTGTTCAATTTGACAAATTACGTAA 59.620 33.333 22.46 11.02 38.97 3.18
430 431 6.858993 GCCTGTTCAATTTGACAAATTACGTA 59.141 34.615 22.46 11.06 38.97 3.57
431 432 5.689961 GCCTGTTCAATTTGACAAATTACGT 59.310 36.000 22.46 1.80 38.97 3.57
432 433 5.689514 TGCCTGTTCAATTTGACAAATTACG 59.310 36.000 22.46 13.37 38.97 3.18
433 434 7.010923 TGTTGCCTGTTCAATTTGACAAATTAC 59.989 33.333 22.46 18.48 38.97 1.89
434 435 7.044181 TGTTGCCTGTTCAATTTGACAAATTA 58.956 30.769 22.46 8.59 38.97 1.40
435 436 5.879223 TGTTGCCTGTTCAATTTGACAAATT 59.121 32.000 18.41 18.41 41.57 1.82
436 437 5.426504 TGTTGCCTGTTCAATTTGACAAAT 58.573 33.333 7.62 7.62 0.00 2.32
437 438 4.825422 TGTTGCCTGTTCAATTTGACAAA 58.175 34.783 2.48 2.48 0.00 2.83
438 439 4.462508 TGTTGCCTGTTCAATTTGACAA 57.537 36.364 0.00 0.00 0.00 3.18
439 440 4.081752 AGTTGTTGCCTGTTCAATTTGACA 60.082 37.500 0.00 0.71 0.00 3.58
440 441 4.432712 AGTTGTTGCCTGTTCAATTTGAC 58.567 39.130 0.00 0.00 0.00 3.18
441 442 4.734398 AGTTGTTGCCTGTTCAATTTGA 57.266 36.364 0.00 0.00 0.00 2.69
442 443 6.449698 AGATAGTTGTTGCCTGTTCAATTTG 58.550 36.000 0.00 0.00 0.00 2.32
443 444 6.655078 AGATAGTTGTTGCCTGTTCAATTT 57.345 33.333 0.00 0.00 0.00 1.82
444 445 6.655078 AAGATAGTTGTTGCCTGTTCAATT 57.345 33.333 0.00 0.00 0.00 2.32
445 446 6.655078 AAAGATAGTTGTTGCCTGTTCAAT 57.345 33.333 0.00 0.00 0.00 2.57
446 447 6.463995 AAAAGATAGTTGTTGCCTGTTCAA 57.536 33.333 0.00 0.00 0.00 2.69
447 448 7.759489 ATAAAAGATAGTTGTTGCCTGTTCA 57.241 32.000 0.00 0.00 0.00 3.18
448 449 8.915654 CAAATAAAAGATAGTTGTTGCCTGTTC 58.084 33.333 0.00 0.00 0.00 3.18
449 450 8.421002 ACAAATAAAAGATAGTTGTTGCCTGTT 58.579 29.630 0.00 0.00 32.72 3.16
450 451 7.951591 ACAAATAAAAGATAGTTGTTGCCTGT 58.048 30.769 0.00 0.00 32.72 4.00
451 452 8.816640 AACAAATAAAAGATAGTTGTTGCCTG 57.183 30.769 11.72 0.00 41.94 4.85
452 453 8.860088 AGAACAAATAAAAGATAGTTGTTGCCT 58.140 29.630 15.88 7.49 43.03 4.75
453 454 8.915654 CAGAACAAATAAAAGATAGTTGTTGCC 58.084 33.333 15.88 5.76 43.03 4.52
454 455 8.427774 GCAGAACAAATAAAAGATAGTTGTTGC 58.572 33.333 15.88 12.02 43.03 4.17
455 456 9.462174 TGCAGAACAAATAAAAGATAGTTGTTG 57.538 29.630 15.88 7.22 43.03 3.33
456 457 9.463443 GTGCAGAACAAATAAAAGATAGTTGTT 57.537 29.630 12.18 12.18 44.80 2.83
457 458 8.850156 AGTGCAGAACAAATAAAAGATAGTTGT 58.150 29.630 0.00 0.00 37.33 3.32
458 459 9.683069 AAGTGCAGAACAAATAAAAGATAGTTG 57.317 29.630 0.00 0.00 0.00 3.16
459 460 9.683069 CAAGTGCAGAACAAATAAAAGATAGTT 57.317 29.630 0.00 0.00 0.00 2.24
460 461 7.809806 GCAAGTGCAGAACAAATAAAAGATAGT 59.190 33.333 0.00 0.00 41.59 2.12
461 462 8.166367 GCAAGTGCAGAACAAATAAAAGATAG 57.834 34.615 0.00 0.00 41.59 2.08
479 480 5.009911 TCCAATCAACCATATATGCAAGTGC 59.990 40.000 7.24 0.00 42.50 4.40
480 481 6.638096 TCCAATCAACCATATATGCAAGTG 57.362 37.500 7.24 2.66 0.00 3.16
481 482 7.288389 ACAATCCAATCAACCATATATGCAAGT 59.712 33.333 7.24 0.00 0.00 3.16
482 483 7.663827 ACAATCCAATCAACCATATATGCAAG 58.336 34.615 7.24 0.00 0.00 4.01
483 484 7.600231 ACAATCCAATCAACCATATATGCAA 57.400 32.000 7.24 0.00 0.00 4.08
484 485 7.600231 AACAATCCAATCAACCATATATGCA 57.400 32.000 7.24 0.00 0.00 3.96
521 522 9.944376 GCTATACTTATATCAACCCTTCATTGA 57.056 33.333 0.00 0.00 40.25 2.57
522 523 9.725019 TGCTATACTTATATCAACCCTTCATTG 57.275 33.333 0.00 0.00 0.00 2.82
525 526 9.944376 GATTGCTATACTTATATCAACCCTTCA 57.056 33.333 0.00 0.00 30.10 3.02
529 530 9.088512 CGAAGATTGCTATACTTATATCAACCC 57.911 37.037 0.00 0.00 30.10 4.11
530 531 9.088512 CCGAAGATTGCTATACTTATATCAACC 57.911 37.037 0.00 0.00 30.10 3.77
531 532 9.856488 TCCGAAGATTGCTATACTTATATCAAC 57.144 33.333 0.00 0.00 30.10 3.18
532 533 9.856488 GTCCGAAGATTGCTATACTTATATCAA 57.144 33.333 0.00 0.00 31.39 2.57
533 534 9.244292 AGTCCGAAGATTGCTATACTTATATCA 57.756 33.333 0.00 0.00 0.00 2.15
534 535 9.509855 CAGTCCGAAGATTGCTATACTTATATC 57.490 37.037 0.00 0.00 0.00 1.63
535 536 8.470805 CCAGTCCGAAGATTGCTATACTTATAT 58.529 37.037 0.00 0.00 0.00 0.86
536 537 7.093902 CCCAGTCCGAAGATTGCTATACTTATA 60.094 40.741 0.00 0.00 0.00 0.98
537 538 6.295349 CCCAGTCCGAAGATTGCTATACTTAT 60.295 42.308 0.00 0.00 0.00 1.73
538 539 5.010719 CCCAGTCCGAAGATTGCTATACTTA 59.989 44.000 0.00 0.00 0.00 2.24
539 540 4.202264 CCCAGTCCGAAGATTGCTATACTT 60.202 45.833 0.00 0.00 0.00 2.24
540 541 3.322254 CCCAGTCCGAAGATTGCTATACT 59.678 47.826 0.00 0.00 0.00 2.12
541 542 3.321111 TCCCAGTCCGAAGATTGCTATAC 59.679 47.826 0.00 0.00 0.00 1.47
542 543 3.321111 GTCCCAGTCCGAAGATTGCTATA 59.679 47.826 0.00 0.00 0.00 1.31
543 544 2.103263 GTCCCAGTCCGAAGATTGCTAT 59.897 50.000 0.00 0.00 0.00 2.97
544 545 1.480954 GTCCCAGTCCGAAGATTGCTA 59.519 52.381 0.00 0.00 0.00 3.49
545 546 0.250513 GTCCCAGTCCGAAGATTGCT 59.749 55.000 0.00 0.00 0.00 3.91
546 547 1.084370 CGTCCCAGTCCGAAGATTGC 61.084 60.000 0.00 0.00 0.00 3.56
547 548 0.246635 ACGTCCCAGTCCGAAGATTG 59.753 55.000 0.00 0.00 0.00 2.67
548 549 0.246635 CACGTCCCAGTCCGAAGATT 59.753 55.000 0.00 0.00 0.00 2.40
549 550 0.898789 ACACGTCCCAGTCCGAAGAT 60.899 55.000 0.00 0.00 0.00 2.40
550 551 1.521450 GACACGTCCCAGTCCGAAGA 61.521 60.000 0.00 0.00 0.00 2.87
551 552 1.080705 GACACGTCCCAGTCCGAAG 60.081 63.158 0.00 0.00 0.00 3.79
552 553 1.183030 ATGACACGTCCCAGTCCGAA 61.183 55.000 1.75 0.00 33.89 4.30
553 554 1.592400 GATGACACGTCCCAGTCCGA 61.592 60.000 1.75 0.00 33.89 4.55
554 555 1.153823 GATGACACGTCCCAGTCCG 60.154 63.158 1.75 0.00 33.89 4.79
555 556 0.173708 GAGATGACACGTCCCAGTCC 59.826 60.000 1.75 0.00 33.89 3.85
556 557 0.888619 TGAGATGACACGTCCCAGTC 59.111 55.000 0.00 0.00 35.37 3.51
557 558 1.478510 GATGAGATGACACGTCCCAGT 59.521 52.381 0.00 0.00 0.00 4.00
558 559 1.478105 TGATGAGATGACACGTCCCAG 59.522 52.381 0.00 0.00 0.00 4.45
559 560 1.204704 GTGATGAGATGACACGTCCCA 59.795 52.381 0.00 0.00 0.00 4.37
560 561 1.204704 TGTGATGAGATGACACGTCCC 59.795 52.381 0.00 0.00 37.35 4.46
561 562 2.654749 TGTGATGAGATGACACGTCC 57.345 50.000 0.00 0.00 37.35 4.79
562 563 3.838120 TCTTGTGATGAGATGACACGTC 58.162 45.455 0.00 0.00 37.35 4.34
563 564 3.942130 TCTTGTGATGAGATGACACGT 57.058 42.857 0.00 0.00 37.35 4.49
564 565 5.791367 AAATCTTGTGATGAGATGACACG 57.209 39.130 0.00 0.00 37.35 4.49
565 566 8.725148 ACTTAAAATCTTGTGATGAGATGACAC 58.275 33.333 0.00 0.00 34.24 3.67
566 567 8.853077 ACTTAAAATCTTGTGATGAGATGACA 57.147 30.769 0.00 0.00 34.24 3.58
610 611 9.595357 GGTTTTATTTCTAAGATGCTATAACGC 57.405 33.333 0.00 0.00 0.00 4.84
629 630 9.969001 TGTGGCTTACTTTTATAGAGGTTTTAT 57.031 29.630 0.00 0.00 0.00 1.40
630 631 9.444600 CTGTGGCTTACTTTTATAGAGGTTTTA 57.555 33.333 0.00 0.00 0.00 1.52
631 632 7.393515 CCTGTGGCTTACTTTTATAGAGGTTTT 59.606 37.037 0.00 0.00 0.00 2.43
632 633 6.884836 CCTGTGGCTTACTTTTATAGAGGTTT 59.115 38.462 0.00 0.00 0.00 3.27
633 634 6.012771 ACCTGTGGCTTACTTTTATAGAGGTT 60.013 38.462 0.00 0.00 0.00 3.50
634 635 5.487845 ACCTGTGGCTTACTTTTATAGAGGT 59.512 40.000 0.00 0.00 0.00 3.85
635 636 5.990668 ACCTGTGGCTTACTTTTATAGAGG 58.009 41.667 0.00 0.00 0.00 3.69
636 637 6.640518 TGACCTGTGGCTTACTTTTATAGAG 58.359 40.000 0.00 0.00 0.00 2.43
637 638 6.614694 TGACCTGTGGCTTACTTTTATAGA 57.385 37.500 0.00 0.00 0.00 1.98
638 639 6.316390 CCTTGACCTGTGGCTTACTTTTATAG 59.684 42.308 0.00 0.00 0.00 1.31
639 640 6.177610 CCTTGACCTGTGGCTTACTTTTATA 58.822 40.000 0.00 0.00 0.00 0.98
640 641 5.010282 CCTTGACCTGTGGCTTACTTTTAT 58.990 41.667 0.00 0.00 0.00 1.40
641 642 4.394729 CCTTGACCTGTGGCTTACTTTTA 58.605 43.478 0.00 0.00 0.00 1.52
642 643 3.222603 CCTTGACCTGTGGCTTACTTTT 58.777 45.455 0.00 0.00 0.00 2.27
643 644 2.489073 CCCTTGACCTGTGGCTTACTTT 60.489 50.000 0.00 0.00 0.00 2.66
644 645 1.073923 CCCTTGACCTGTGGCTTACTT 59.926 52.381 0.00 0.00 0.00 2.24
645 646 0.693049 CCCTTGACCTGTGGCTTACT 59.307 55.000 0.00 0.00 0.00 2.24
646 647 0.960861 GCCCTTGACCTGTGGCTTAC 60.961 60.000 0.00 0.00 40.77 2.34
647 648 1.378762 GCCCTTGACCTGTGGCTTA 59.621 57.895 0.00 0.00 40.77 3.09
648 649 2.116125 GCCCTTGACCTGTGGCTT 59.884 61.111 0.00 0.00 40.77 4.35
649 650 3.177884 TGCCCTTGACCTGTGGCT 61.178 61.111 0.00 0.00 44.32 4.75
650 651 2.674380 CTGCCCTTGACCTGTGGC 60.674 66.667 0.00 0.00 44.27 5.01
651 652 2.674380 GCTGCCCTTGACCTGTGG 60.674 66.667 0.00 0.00 0.00 4.17
652 653 1.303888 ATGCTGCCCTTGACCTGTG 60.304 57.895 0.00 0.00 0.00 3.66
653 654 1.303888 CATGCTGCCCTTGACCTGT 60.304 57.895 0.00 0.00 0.00 4.00
654 655 2.050350 CCATGCTGCCCTTGACCTG 61.050 63.158 0.00 0.00 0.00 4.00
655 656 2.357836 CCATGCTGCCCTTGACCT 59.642 61.111 0.00 0.00 0.00 3.85
656 657 2.036256 ACCATGCTGCCCTTGACC 59.964 61.111 0.00 0.00 0.00 4.02
657 658 1.181098 AACACCATGCTGCCCTTGAC 61.181 55.000 0.00 0.00 0.00 3.18
658 659 0.895100 GAACACCATGCTGCCCTTGA 60.895 55.000 0.00 0.00 0.00 3.02
659 660 1.588082 GAACACCATGCTGCCCTTG 59.412 57.895 0.00 0.00 0.00 3.61
660 661 1.607467 GGAACACCATGCTGCCCTT 60.607 57.895 0.00 0.00 0.00 3.95
661 662 2.036256 GGAACACCATGCTGCCCT 59.964 61.111 0.00 0.00 0.00 5.19
662 663 1.187567 AAAGGAACACCATGCTGCCC 61.188 55.000 0.00 0.00 0.00 5.36
663 664 0.244721 GAAAGGAACACCATGCTGCC 59.755 55.000 0.00 0.00 0.00 4.85
664 665 0.961019 TGAAAGGAACACCATGCTGC 59.039 50.000 0.00 0.00 0.00 5.25
665 666 3.006110 ACATTGAAAGGAACACCATGCTG 59.994 43.478 0.00 0.00 0.00 4.41
666 667 3.233507 ACATTGAAAGGAACACCATGCT 58.766 40.909 0.00 0.00 0.00 3.79
667 668 3.665745 ACATTGAAAGGAACACCATGC 57.334 42.857 0.00 0.00 0.00 4.06
668 669 6.974622 GCTATTACATTGAAAGGAACACCATG 59.025 38.462 0.00 0.00 0.00 3.66
669 670 6.663093 TGCTATTACATTGAAAGGAACACCAT 59.337 34.615 0.00 0.00 0.00 3.55
670 671 6.007076 TGCTATTACATTGAAAGGAACACCA 58.993 36.000 0.00 0.00 0.00 4.17
671 672 6.509418 TGCTATTACATTGAAAGGAACACC 57.491 37.500 0.00 0.00 0.00 4.16
672 673 7.761409 TCATGCTATTACATTGAAAGGAACAC 58.239 34.615 0.00 0.00 0.00 3.32
673 674 7.936496 TCATGCTATTACATTGAAAGGAACA 57.064 32.000 0.00 0.00 0.00 3.18
674 675 8.623903 TCATCATGCTATTACATTGAAAGGAAC 58.376 33.333 0.00 0.00 0.00 3.62
675 676 8.750515 TCATCATGCTATTACATTGAAAGGAA 57.249 30.769 0.00 0.00 0.00 3.36
676 677 8.750515 TTCATCATGCTATTACATTGAAAGGA 57.249 30.769 0.00 0.00 28.62 3.36
677 678 9.976511 ATTTCATCATGCTATTACATTGAAAGG 57.023 29.630 9.13 0.00 38.86 3.11
702 703 9.840427 GTTGCTTTGTTGTGAAAGTGTATATAT 57.160 29.630 0.00 0.00 35.67 0.86
703 704 9.062524 AGTTGCTTTGTTGTGAAAGTGTATATA 57.937 29.630 0.00 0.00 35.67 0.86
704 705 7.940850 AGTTGCTTTGTTGTGAAAGTGTATAT 58.059 30.769 0.00 0.00 35.67 0.86
705 706 7.282224 AGAGTTGCTTTGTTGTGAAAGTGTATA 59.718 33.333 0.00 0.00 35.67 1.47
706 707 6.095440 AGAGTTGCTTTGTTGTGAAAGTGTAT 59.905 34.615 0.00 0.00 35.67 2.29
707 708 5.414454 AGAGTTGCTTTGTTGTGAAAGTGTA 59.586 36.000 0.00 0.00 35.67 2.90
708 709 4.218417 AGAGTTGCTTTGTTGTGAAAGTGT 59.782 37.500 0.00 0.00 35.67 3.55
709 710 4.737054 AGAGTTGCTTTGTTGTGAAAGTG 58.263 39.130 0.00 0.00 35.67 3.16
710 711 5.048083 TCAAGAGTTGCTTTGTTGTGAAAGT 60.048 36.000 0.00 0.00 35.67 2.66
711 712 5.401550 TCAAGAGTTGCTTTGTTGTGAAAG 58.598 37.500 0.00 0.00 33.60 2.62
712 713 5.384063 TCAAGAGTTGCTTTGTTGTGAAA 57.616 34.783 0.00 0.00 33.60 2.69
713 714 5.357878 AGATCAAGAGTTGCTTTGTTGTGAA 59.642 36.000 0.00 0.00 33.60 3.18
714 715 4.883585 AGATCAAGAGTTGCTTTGTTGTGA 59.116 37.500 0.00 0.00 33.60 3.58
715 716 5.179045 AGATCAAGAGTTGCTTTGTTGTG 57.821 39.130 0.00 0.00 33.60 3.33
716 717 5.239525 GGTAGATCAAGAGTTGCTTTGTTGT 59.760 40.000 0.00 0.00 33.60 3.32
717 718 5.239306 TGGTAGATCAAGAGTTGCTTTGTTG 59.761 40.000 0.00 0.00 33.60 3.33
718 719 5.376625 TGGTAGATCAAGAGTTGCTTTGTT 58.623 37.500 0.00 0.00 33.60 2.83
719 720 4.973168 TGGTAGATCAAGAGTTGCTTTGT 58.027 39.130 0.00 0.00 33.60 2.83
720 721 6.506500 AATGGTAGATCAAGAGTTGCTTTG 57.493 37.500 0.00 0.00 33.60 2.77
721 722 7.231317 TCAAAATGGTAGATCAAGAGTTGCTTT 59.769 33.333 0.00 0.00 33.60 3.51
722 723 6.716628 TCAAAATGGTAGATCAAGAGTTGCTT 59.283 34.615 0.00 0.00 37.29 3.91
723 724 6.150140 GTCAAAATGGTAGATCAAGAGTTGCT 59.850 38.462 0.00 0.00 0.00 3.91
724 725 6.072508 TGTCAAAATGGTAGATCAAGAGTTGC 60.073 38.462 0.00 0.00 0.00 4.17
725 726 7.439157 TGTCAAAATGGTAGATCAAGAGTTG 57.561 36.000 0.00 0.00 0.00 3.16
726 727 8.352942 GTTTGTCAAAATGGTAGATCAAGAGTT 58.647 33.333 0.00 0.00 0.00 3.01
727 728 7.040409 GGTTTGTCAAAATGGTAGATCAAGAGT 60.040 37.037 0.00 0.00 0.00 3.24
728 729 7.040478 TGGTTTGTCAAAATGGTAGATCAAGAG 60.040 37.037 0.00 0.00 0.00 2.85
729 730 6.775142 TGGTTTGTCAAAATGGTAGATCAAGA 59.225 34.615 0.00 0.00 0.00 3.02
730 731 6.980593 TGGTTTGTCAAAATGGTAGATCAAG 58.019 36.000 0.00 0.00 0.00 3.02
731 732 6.968263 TGGTTTGTCAAAATGGTAGATCAA 57.032 33.333 0.00 0.00 0.00 2.57
732 733 6.968263 TTGGTTTGTCAAAATGGTAGATCA 57.032 33.333 0.00 0.00 0.00 2.92
733 734 8.711457 CAATTTGGTTTGTCAAAATGGTAGATC 58.289 33.333 0.00 0.00 39.64 2.75
734 735 8.210265 ACAATTTGGTTTGTCAAAATGGTAGAT 58.790 29.630 0.00 0.00 40.12 1.98
735 736 7.560368 ACAATTTGGTTTGTCAAAATGGTAGA 58.440 30.769 0.00 0.00 40.12 2.59
736 737 7.784633 ACAATTTGGTTTGTCAAAATGGTAG 57.215 32.000 0.00 0.00 40.12 3.18
737 738 8.696374 TCTACAATTTGGTTTGTCAAAATGGTA 58.304 29.630 0.00 0.00 40.12 3.25
738 739 7.560368 TCTACAATTTGGTTTGTCAAAATGGT 58.440 30.769 0.00 0.00 40.12 3.55
739 740 7.925483 TCTCTACAATTTGGTTTGTCAAAATGG 59.075 33.333 0.00 0.00 40.12 3.16
740 741 8.755018 GTCTCTACAATTTGGTTTGTCAAAATG 58.245 33.333 0.00 0.00 41.03 2.32
741 742 8.695456 AGTCTCTACAATTTGGTTTGTCAAAAT 58.305 29.630 0.00 0.00 40.25 1.82
742 743 8.062065 AGTCTCTACAATTTGGTTTGTCAAAA 57.938 30.769 0.00 0.00 40.25 2.44
743 744 7.639113 AGTCTCTACAATTTGGTTTGTCAAA 57.361 32.000 0.78 0.00 40.25 2.69
744 745 8.740123 TTAGTCTCTACAATTTGGTTTGTCAA 57.260 30.769 0.78 0.00 40.25 3.18
745 746 8.918202 ATTAGTCTCTACAATTTGGTTTGTCA 57.082 30.769 0.78 0.00 40.25 3.58
746 747 9.612620 CAATTAGTCTCTACAATTTGGTTTGTC 57.387 33.333 0.78 0.00 40.25 3.18
747 748 8.082242 GCAATTAGTCTCTACAATTTGGTTTGT 58.918 33.333 0.78 0.00 42.31 2.83
748 749 7.271223 CGCAATTAGTCTCTACAATTTGGTTTG 59.729 37.037 0.78 0.00 0.00 2.93
749 750 7.305474 CGCAATTAGTCTCTACAATTTGGTTT 58.695 34.615 0.78 0.00 0.00 3.27
750 751 6.128007 CCGCAATTAGTCTCTACAATTTGGTT 60.128 38.462 0.78 0.00 0.00 3.67
751 752 5.354234 CCGCAATTAGTCTCTACAATTTGGT 59.646 40.000 0.78 0.00 0.00 3.67
752 753 5.584649 TCCGCAATTAGTCTCTACAATTTGG 59.415 40.000 0.78 0.00 0.00 3.28
753 754 6.092122 TGTCCGCAATTAGTCTCTACAATTTG 59.908 38.462 0.00 0.00 0.00 2.32
754 755 6.092259 GTGTCCGCAATTAGTCTCTACAATTT 59.908 38.462 0.00 0.00 0.00 1.82
755 756 5.581085 GTGTCCGCAATTAGTCTCTACAATT 59.419 40.000 0.00 0.00 0.00 2.32
756 757 5.109903 GTGTCCGCAATTAGTCTCTACAAT 58.890 41.667 0.00 0.00 0.00 2.71
757 758 4.491676 GTGTCCGCAATTAGTCTCTACAA 58.508 43.478 0.00 0.00 0.00 2.41
758 759 3.427098 CGTGTCCGCAATTAGTCTCTACA 60.427 47.826 0.00 0.00 0.00 2.74
759 760 3.106672 CGTGTCCGCAATTAGTCTCTAC 58.893 50.000 0.00 0.00 0.00 2.59
760 761 3.011818 TCGTGTCCGCAATTAGTCTCTA 58.988 45.455 0.00 0.00 0.00 2.43
761 762 1.816835 TCGTGTCCGCAATTAGTCTCT 59.183 47.619 0.00 0.00 0.00 3.10
762 763 1.918609 GTCGTGTCCGCAATTAGTCTC 59.081 52.381 0.00 0.00 0.00 3.36
763 764 1.271379 TGTCGTGTCCGCAATTAGTCT 59.729 47.619 0.00 0.00 0.00 3.24
764 765 1.705256 TGTCGTGTCCGCAATTAGTC 58.295 50.000 0.00 0.00 0.00 2.59
765 766 2.157834 TTGTCGTGTCCGCAATTAGT 57.842 45.000 0.00 0.00 0.00 2.24
766 767 3.529634 TTTTGTCGTGTCCGCAATTAG 57.470 42.857 0.00 0.00 32.82 1.73
767 768 3.965292 TTTTTGTCGTGTCCGCAATTA 57.035 38.095 0.00 0.00 32.82 1.40
768 769 2.853731 TTTTTGTCGTGTCCGCAATT 57.146 40.000 0.00 0.00 32.82 2.32
793 795 0.234884 CGCCAGACCGAAACAAACTC 59.765 55.000 0.00 0.00 0.00 3.01
942 963 9.667107 AAGAAATAAATGGTACGAAGAGATGAA 57.333 29.630 0.00 0.00 0.00 2.57
949 970 9.503427 GGAAATCAAGAAATAAATGGTACGAAG 57.497 33.333 0.00 0.00 0.00 3.79
1119 1268 1.593787 CAGCATGGTGAGGACGAGT 59.406 57.895 20.20 0.00 0.00 4.18
1288 1452 3.426292 GGCTTCTTGTATTTCTTGTCCGC 60.426 47.826 0.00 0.00 0.00 5.54
1319 1483 3.243535 GCTGTATGACGATGAGGACATGA 60.244 47.826 0.00 0.00 36.82 3.07
1447 1783 1.639298 CTAGGCAGGCGCTTGTTGTC 61.639 60.000 21.36 9.54 38.60 3.18
1738 2139 7.348815 AGTTATGAGATTGAATTCCACATCCA 58.651 34.615 2.27 3.77 0.00 3.41
1788 2203 2.166664 GAGTCCGATGCTTTCCACTAGT 59.833 50.000 0.00 0.00 0.00 2.57
1821 2241 1.141881 CACCGGAAGTAGCATCGCT 59.858 57.895 9.46 0.00 43.41 4.93
1835 2255 2.194201 ATTGGAACCCTAACACACCG 57.806 50.000 0.00 0.00 0.00 4.94
1940 2599 2.032799 CGTTTCTAGCCTGTGTTGCAAA 59.967 45.455 0.00 0.00 0.00 3.68
1942 2603 1.225855 CGTTTCTAGCCTGTGTTGCA 58.774 50.000 0.00 0.00 0.00 4.08
2021 2717 7.521099 GCATCATGTATTAAGCTAATGTGCACT 60.521 37.037 19.41 0.28 34.99 4.40
2055 2751 9.362539 GAGTGTTTAAAAATTGCTCATCATGAT 57.637 29.630 1.18 1.18 0.00 2.45
2059 2760 7.652909 CCTTGAGTGTTTAAAAATTGCTCATCA 59.347 33.333 0.00 0.00 32.55 3.07
2494 3208 8.502161 AAGTGTTGATTGCGTATTAAAACTTC 57.498 30.769 6.11 0.00 36.18 3.01
2497 3212 8.502161 AAGAAGTGTTGATTGCGTATTAAAAC 57.498 30.769 0.00 0.00 0.00 2.43
2507 3222 7.538575 ACCATGTATTAAGAAGTGTTGATTGC 58.461 34.615 0.00 0.00 0.00 3.56
2648 3364 7.548780 TCCCCGCGTATAAAATATATAAACCAC 59.451 37.037 4.92 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.