Multiple sequence alignment - TraesCS1A01G049900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G049900 chr1A 100.000 2357 0 0 1 2357 31902863 31900507 0.000000e+00 4353.0
1 TraesCS1A01G049900 chr1A 91.340 612 38 8 30 629 36616989 36617597 0.000000e+00 822.0
2 TraesCS1A01G049900 chr1A 87.147 389 25 10 1976 2357 36617591 36617961 3.620000e-113 418.0
3 TraesCS1A01G049900 chr1D 95.546 1347 58 2 627 1971 60171817 60170471 0.000000e+00 2154.0
4 TraesCS1A01G049900 chr1D 94.678 1353 66 4 626 1974 247505760 247504410 0.000000e+00 2095.0
5 TraesCS1A01G049900 chr1D 90.523 612 43 9 30 629 37434467 37435075 0.000000e+00 795.0
6 TraesCS1A01G049900 chr1D 86.118 389 26 10 1976 2357 37435069 37435436 6.110000e-106 394.0
7 TraesCS1A01G049900 chr2D 95.387 1344 60 2 627 1968 73126873 73125530 0.000000e+00 2137.0
8 TraesCS1A01G049900 chr2D 94.675 1352 67 5 629 1977 621748803 621750152 0.000000e+00 2093.0
9 TraesCS1A01G049900 chr2D 89.175 194 15 5 129 316 579380403 579380596 1.090000e-58 237.0
10 TraesCS1A01G049900 chr3D 94.948 1346 66 2 624 1967 584701396 584700051 0.000000e+00 2108.0
11 TraesCS1A01G049900 chr7D 95.071 1339 62 4 628 1964 497560907 497562243 0.000000e+00 2104.0
12 TraesCS1A01G049900 chr7D 94.737 1349 68 3 627 1972 50081833 50080485 0.000000e+00 2095.0
13 TraesCS1A01G049900 chr6D 94.776 1340 65 3 628 1965 142136692 142135356 0.000000e+00 2082.0
14 TraesCS1A01G049900 chr5D 94.627 1340 69 3 628 1965 275171748 275170410 0.000000e+00 2073.0
15 TraesCS1A01G049900 chr1B 82.353 510 55 14 128 629 57020487 57020969 6.060000e-111 411.0
16 TraesCS1A01G049900 chr7A 94.872 39 2 0 2222 2260 724488190 724488228 7.030000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G049900 chr1A 31900507 31902863 2356 True 4353.0 4353 100.0000 1 2357 1 chr1A.!!$R1 2356
1 TraesCS1A01G049900 chr1A 36616989 36617961 972 False 620.0 822 89.2435 30 2357 2 chr1A.!!$F1 2327
2 TraesCS1A01G049900 chr1D 60170471 60171817 1346 True 2154.0 2154 95.5460 627 1971 1 chr1D.!!$R1 1344
3 TraesCS1A01G049900 chr1D 247504410 247505760 1350 True 2095.0 2095 94.6780 626 1974 1 chr1D.!!$R2 1348
4 TraesCS1A01G049900 chr1D 37434467 37435436 969 False 594.5 795 88.3205 30 2357 2 chr1D.!!$F1 2327
5 TraesCS1A01G049900 chr2D 73125530 73126873 1343 True 2137.0 2137 95.3870 627 1968 1 chr2D.!!$R1 1341
6 TraesCS1A01G049900 chr2D 621748803 621750152 1349 False 2093.0 2093 94.6750 629 1977 1 chr2D.!!$F2 1348
7 TraesCS1A01G049900 chr3D 584700051 584701396 1345 True 2108.0 2108 94.9480 624 1967 1 chr3D.!!$R1 1343
8 TraesCS1A01G049900 chr7D 497560907 497562243 1336 False 2104.0 2104 95.0710 628 1964 1 chr7D.!!$F1 1336
9 TraesCS1A01G049900 chr7D 50080485 50081833 1348 True 2095.0 2095 94.7370 627 1972 1 chr7D.!!$R1 1345
10 TraesCS1A01G049900 chr6D 142135356 142136692 1336 True 2082.0 2082 94.7760 628 1965 1 chr6D.!!$R1 1337
11 TraesCS1A01G049900 chr5D 275170410 275171748 1338 True 2073.0 2073 94.6270 628 1965 1 chr5D.!!$R1 1337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 597 0.187361 TGGAGGGTCCTTTTTGTGGG 59.813 55.0 0.0 0.0 37.46 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2494 0.043334 AGTCTACTCCCAGGCATGGT 59.957 55.0 17.55 0.0 46.1 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.033448 TGCCCCCGCACTTTGTAG 59.967 61.111 0.00 0.00 41.12 2.74
23 24 3.440415 GCCCCCGCACTTTGTAGC 61.440 66.667 0.00 0.00 34.03 3.58
24 25 2.351276 CCCCCGCACTTTGTAGCT 59.649 61.111 0.00 0.00 0.00 3.32
25 26 1.303317 CCCCCGCACTTTGTAGCTT 60.303 57.895 0.00 0.00 0.00 3.74
26 27 1.305930 CCCCCGCACTTTGTAGCTTC 61.306 60.000 0.00 0.00 0.00 3.86
27 28 1.305930 CCCCGCACTTTGTAGCTTCC 61.306 60.000 0.00 0.00 0.00 3.46
28 29 0.321653 CCCGCACTTTGTAGCTTCCT 60.322 55.000 0.00 0.00 0.00 3.36
49 50 2.026822 TCCTCAGCAGGGAAAGATTCAC 60.027 50.000 0.00 0.00 40.80 3.18
55 56 0.328258 AGGGAAAGATTCACCCCACG 59.672 55.000 0.00 0.00 44.21 4.94
58 59 1.243902 GAAAGATTCACCCCACGCAA 58.756 50.000 0.00 0.00 0.00 4.85
63 64 0.620556 ATTCACCCCACGCAATCTCT 59.379 50.000 0.00 0.00 0.00 3.10
108 110 4.078639 AGTATCTTTGCCTCCACATAGC 57.921 45.455 0.00 0.00 0.00 2.97
109 111 3.455910 AGTATCTTTGCCTCCACATAGCA 59.544 43.478 0.00 0.00 33.97 3.49
126 128 2.431454 AGCAGAGCTCTTTAAAGCACC 58.569 47.619 15.27 1.45 45.00 5.01
201 204 5.312079 ACTTATCTATCCCTTTGCATCTGC 58.688 41.667 0.00 0.00 42.50 4.26
215 218 2.479049 GCATCTGCACTTAGTTGGCATG 60.479 50.000 0.00 0.00 41.59 4.06
216 219 1.825090 TCTGCACTTAGTTGGCATGG 58.175 50.000 0.00 0.00 36.87 3.66
217 220 1.350684 TCTGCACTTAGTTGGCATGGA 59.649 47.619 0.00 0.00 36.87 3.41
218 221 1.470098 CTGCACTTAGTTGGCATGGAC 59.530 52.381 0.00 0.00 36.87 4.02
219 222 0.447801 GCACTTAGTTGGCATGGACG 59.552 55.000 0.00 0.00 0.00 4.79
220 223 1.943968 GCACTTAGTTGGCATGGACGA 60.944 52.381 0.00 0.00 0.00 4.20
221 224 2.002586 CACTTAGTTGGCATGGACGAG 58.997 52.381 0.00 0.00 0.00 4.18
222 225 1.899814 ACTTAGTTGGCATGGACGAGA 59.100 47.619 0.00 0.00 0.00 4.04
223 226 2.093973 ACTTAGTTGGCATGGACGAGAG 60.094 50.000 0.00 0.00 0.00 3.20
241 244 2.191908 TGCTTTGCACACCGGACT 59.808 55.556 9.46 0.00 31.71 3.85
242 245 1.891919 TGCTTTGCACACCGGACTC 60.892 57.895 9.46 0.00 31.71 3.36
243 246 2.617274 GCTTTGCACACCGGACTCC 61.617 63.158 9.46 0.00 0.00 3.85
244 247 1.071471 CTTTGCACACCGGACTCCT 59.929 57.895 9.46 0.00 0.00 3.69
245 248 0.951040 CTTTGCACACCGGACTCCTC 60.951 60.000 9.46 0.00 0.00 3.71
246 249 1.407656 TTTGCACACCGGACTCCTCT 61.408 55.000 9.46 0.00 0.00 3.69
247 250 1.816863 TTGCACACCGGACTCCTCTC 61.817 60.000 9.46 0.00 0.00 3.20
248 251 3.007973 GCACACCGGACTCCTCTCC 62.008 68.421 9.46 0.00 0.00 3.71
249 252 1.606601 CACACCGGACTCCTCTCCA 60.607 63.158 9.46 0.00 0.00 3.86
250 253 0.972983 CACACCGGACTCCTCTCCAT 60.973 60.000 9.46 0.00 0.00 3.41
251 254 0.252284 ACACCGGACTCCTCTCCATT 60.252 55.000 9.46 0.00 0.00 3.16
252 255 0.905357 CACCGGACTCCTCTCCATTT 59.095 55.000 9.46 0.00 0.00 2.32
253 256 1.134670 CACCGGACTCCTCTCCATTTC 60.135 57.143 9.46 0.00 0.00 2.17
254 257 1.195115 CCGGACTCCTCTCCATTTCA 58.805 55.000 0.00 0.00 0.00 2.69
255 258 1.134670 CCGGACTCCTCTCCATTTCAC 60.135 57.143 0.00 0.00 0.00 3.18
256 259 1.827969 CGGACTCCTCTCCATTTCACT 59.172 52.381 0.00 0.00 0.00 3.41
257 260 2.417924 CGGACTCCTCTCCATTTCACTG 60.418 54.545 0.00 0.00 0.00 3.66
258 261 2.569404 GGACTCCTCTCCATTTCACTGT 59.431 50.000 0.00 0.00 0.00 3.55
259 262 3.368948 GGACTCCTCTCCATTTCACTGTC 60.369 52.174 0.00 0.00 0.00 3.51
260 263 2.569404 ACTCCTCTCCATTTCACTGTCC 59.431 50.000 0.00 0.00 0.00 4.02
261 264 2.836981 CTCCTCTCCATTTCACTGTCCT 59.163 50.000 0.00 0.00 0.00 3.85
262 265 2.834549 TCCTCTCCATTTCACTGTCCTC 59.165 50.000 0.00 0.00 0.00 3.71
263 266 2.093235 CCTCTCCATTTCACTGTCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
264 267 2.568956 CTCTCCATTTCACTGTCCTCCA 59.431 50.000 0.00 0.00 0.00 3.86
265 268 3.184628 TCTCCATTTCACTGTCCTCCAT 58.815 45.455 0.00 0.00 0.00 3.41
266 269 3.588842 TCTCCATTTCACTGTCCTCCATT 59.411 43.478 0.00 0.00 0.00 3.16
267 270 4.043310 TCTCCATTTCACTGTCCTCCATTT 59.957 41.667 0.00 0.00 0.00 2.32
268 271 4.739793 TCCATTTCACTGTCCTCCATTTT 58.260 39.130 0.00 0.00 0.00 1.82
269 272 4.766891 TCCATTTCACTGTCCTCCATTTTC 59.233 41.667 0.00 0.00 0.00 2.29
270 273 4.082026 CCATTTCACTGTCCTCCATTTTCC 60.082 45.833 0.00 0.00 0.00 3.13
271 274 2.879103 TCACTGTCCTCCATTTTCCC 57.121 50.000 0.00 0.00 0.00 3.97
272 275 2.061848 TCACTGTCCTCCATTTTCCCA 58.938 47.619 0.00 0.00 0.00 4.37
273 276 2.649312 TCACTGTCCTCCATTTTCCCAT 59.351 45.455 0.00 0.00 0.00 4.00
274 277 3.075882 TCACTGTCCTCCATTTTCCCATT 59.924 43.478 0.00 0.00 0.00 3.16
275 278 3.834231 CACTGTCCTCCATTTTCCCATTT 59.166 43.478 0.00 0.00 0.00 2.32
276 279 4.284234 CACTGTCCTCCATTTTCCCATTTT 59.716 41.667 0.00 0.00 0.00 1.82
277 280 4.907269 ACTGTCCTCCATTTTCCCATTTTT 59.093 37.500 0.00 0.00 0.00 1.94
278 281 5.221702 ACTGTCCTCCATTTTCCCATTTTTG 60.222 40.000 0.00 0.00 0.00 2.44
279 282 4.002982 GTCCTCCATTTTCCCATTTTTGC 58.997 43.478 0.00 0.00 0.00 3.68
280 283 3.909364 TCCTCCATTTTCCCATTTTTGCT 59.091 39.130 0.00 0.00 0.00 3.91
281 284 4.020307 TCCTCCATTTTCCCATTTTTGCTC 60.020 41.667 0.00 0.00 0.00 4.26
282 285 4.019950 CCTCCATTTTCCCATTTTTGCTCT 60.020 41.667 0.00 0.00 0.00 4.09
283 286 4.897140 TCCATTTTCCCATTTTTGCTCTG 58.103 39.130 0.00 0.00 0.00 3.35
284 287 4.592351 TCCATTTTCCCATTTTTGCTCTGA 59.408 37.500 0.00 0.00 0.00 3.27
285 288 5.248934 TCCATTTTCCCATTTTTGCTCTGAT 59.751 36.000 0.00 0.00 0.00 2.90
286 289 5.941647 CCATTTTCCCATTTTTGCTCTGATT 59.058 36.000 0.00 0.00 0.00 2.57
287 290 6.431852 CCATTTTCCCATTTTTGCTCTGATTT 59.568 34.615 0.00 0.00 0.00 2.17
288 291 7.040271 CCATTTTCCCATTTTTGCTCTGATTTT 60.040 33.333 0.00 0.00 0.00 1.82
289 292 7.878547 TTTTCCCATTTTTGCTCTGATTTTT 57.121 28.000 0.00 0.00 0.00 1.94
290 293 7.495135 TTTCCCATTTTTGCTCTGATTTTTC 57.505 32.000 0.00 0.00 0.00 2.29
291 294 6.172136 TCCCATTTTTGCTCTGATTTTTCA 57.828 33.333 0.00 0.00 0.00 2.69
292 295 6.771573 TCCCATTTTTGCTCTGATTTTTCAT 58.228 32.000 0.00 0.00 0.00 2.57
293 296 6.875195 TCCCATTTTTGCTCTGATTTTTCATC 59.125 34.615 0.00 0.00 0.00 2.92
294 297 6.651643 CCCATTTTTGCTCTGATTTTTCATCA 59.348 34.615 0.00 0.00 0.00 3.07
295 298 7.148474 CCCATTTTTGCTCTGATTTTTCATCAG 60.148 37.037 5.61 5.61 45.08 2.90
296 299 7.148474 CCATTTTTGCTCTGATTTTTCATCAGG 60.148 37.037 11.11 4.59 44.15 3.86
297 300 6.409524 TTTTGCTCTGATTTTTCATCAGGT 57.590 33.333 11.11 0.00 44.15 4.00
298 301 6.409524 TTTGCTCTGATTTTTCATCAGGTT 57.590 33.333 11.11 0.00 44.15 3.50
299 302 6.409524 TTGCTCTGATTTTTCATCAGGTTT 57.590 33.333 11.11 0.00 44.15 3.27
300 303 6.409524 TGCTCTGATTTTTCATCAGGTTTT 57.590 33.333 11.11 0.00 44.15 2.43
301 304 6.819284 TGCTCTGATTTTTCATCAGGTTTTT 58.181 32.000 11.11 0.00 44.15 1.94
325 328 9.899661 TTTTCATGCAGTATTTATACCTACAGT 57.100 29.630 0.00 0.00 33.79 3.55
326 329 9.899661 TTTCATGCAGTATTTATACCTACAGTT 57.100 29.630 0.00 0.00 33.79 3.16
327 330 9.899661 TTCATGCAGTATTTATACCTACAGTTT 57.100 29.630 0.00 0.00 33.79 2.66
328 331 9.899661 TCATGCAGTATTTATACCTACAGTTTT 57.100 29.630 0.00 0.00 33.79 2.43
355 358 7.884816 TTTTGTTATTTTGTTTGTTGTCGGA 57.115 28.000 0.00 0.00 0.00 4.55
356 359 7.513190 TTTGTTATTTTGTTTGTTGTCGGAG 57.487 32.000 0.00 0.00 0.00 4.63
357 360 5.583495 TGTTATTTTGTTTGTTGTCGGAGG 58.417 37.500 0.00 0.00 0.00 4.30
358 361 5.125739 TGTTATTTTGTTTGTTGTCGGAGGT 59.874 36.000 0.00 0.00 0.00 3.85
359 362 3.495670 TTTTGTTTGTTGTCGGAGGTG 57.504 42.857 0.00 0.00 0.00 4.00
360 363 0.736053 TTGTTTGTTGTCGGAGGTGC 59.264 50.000 0.00 0.00 0.00 5.01
361 364 1.098712 TGTTTGTTGTCGGAGGTGCC 61.099 55.000 0.00 0.00 0.00 5.01
362 365 1.098712 GTTTGTTGTCGGAGGTGCCA 61.099 55.000 0.00 0.00 35.94 4.92
363 366 0.817634 TTTGTTGTCGGAGGTGCCAG 60.818 55.000 0.00 0.00 35.94 4.85
364 367 1.978455 TTGTTGTCGGAGGTGCCAGT 61.978 55.000 0.00 0.00 35.94 4.00
365 368 1.227853 GTTGTCGGAGGTGCCAGTT 60.228 57.895 0.00 0.00 35.94 3.16
366 369 1.227823 TTGTCGGAGGTGCCAGTTG 60.228 57.895 0.00 0.00 35.94 3.16
367 370 1.978455 TTGTCGGAGGTGCCAGTTGT 61.978 55.000 0.00 0.00 35.94 3.32
368 371 1.961277 GTCGGAGGTGCCAGTTGTG 60.961 63.158 0.00 0.00 35.94 3.33
369 372 3.357079 CGGAGGTGCCAGTTGTGC 61.357 66.667 0.00 0.00 35.94 4.57
370 373 2.203337 GGAGGTGCCAGTTGTGCA 60.203 61.111 0.00 0.00 36.34 4.57
371 374 2.263741 GGAGGTGCCAGTTGTGCAG 61.264 63.158 0.00 0.00 39.87 4.41
372 375 1.227943 GAGGTGCCAGTTGTGCAGA 60.228 57.895 0.00 0.00 39.87 4.26
373 376 1.228063 AGGTGCCAGTTGTGCAGAG 60.228 57.895 0.00 0.00 39.87 3.35
374 377 1.526917 GGTGCCAGTTGTGCAGAGT 60.527 57.895 0.00 0.00 39.87 3.24
375 378 1.650912 GTGCCAGTTGTGCAGAGTG 59.349 57.895 0.00 0.00 39.87 3.51
376 379 0.815213 GTGCCAGTTGTGCAGAGTGA 60.815 55.000 6.44 0.00 39.87 3.41
377 380 0.533531 TGCCAGTTGTGCAGAGTGAG 60.534 55.000 6.44 0.00 34.05 3.51
378 381 0.250038 GCCAGTTGTGCAGAGTGAGA 60.250 55.000 6.44 0.00 0.00 3.27
379 382 1.793258 CCAGTTGTGCAGAGTGAGAG 58.207 55.000 6.44 0.00 0.00 3.20
380 383 1.146637 CAGTTGTGCAGAGTGAGAGC 58.853 55.000 0.00 0.00 0.00 4.09
381 384 1.047002 AGTTGTGCAGAGTGAGAGCT 58.953 50.000 0.00 0.00 0.00 4.09
382 385 1.415659 AGTTGTGCAGAGTGAGAGCTT 59.584 47.619 0.00 0.00 0.00 3.74
383 386 1.530293 GTTGTGCAGAGTGAGAGCTTG 59.470 52.381 0.00 0.00 0.00 4.01
384 387 0.602106 TGTGCAGAGTGAGAGCTTGC 60.602 55.000 0.00 0.00 0.00 4.01
385 388 1.004080 TGCAGAGTGAGAGCTTGCC 60.004 57.895 2.05 0.00 0.00 4.52
386 389 1.296068 GCAGAGTGAGAGCTTGCCT 59.704 57.895 0.00 0.00 0.00 4.75
387 390 1.020333 GCAGAGTGAGAGCTTGCCTG 61.020 60.000 0.00 0.00 0.00 4.85
388 391 1.020333 CAGAGTGAGAGCTTGCCTGC 61.020 60.000 0.00 0.00 0.00 4.85
389 392 1.744741 GAGTGAGAGCTTGCCTGCC 60.745 63.158 0.00 0.00 0.00 4.85
390 393 2.182732 GAGTGAGAGCTTGCCTGCCT 62.183 60.000 0.00 0.00 0.00 4.75
391 394 2.039405 GTGAGAGCTTGCCTGCCTG 61.039 63.158 0.00 0.00 0.00 4.85
392 395 2.350514 GAGAGCTTGCCTGCCTGT 59.649 61.111 0.00 0.00 0.00 4.00
393 396 1.744741 GAGAGCTTGCCTGCCTGTC 60.745 63.158 0.00 0.00 0.00 3.51
394 397 3.123620 GAGCTTGCCTGCCTGTCG 61.124 66.667 0.00 0.00 0.00 4.35
395 398 3.596066 GAGCTTGCCTGCCTGTCGA 62.596 63.158 0.00 0.00 0.00 4.20
396 399 2.437359 GCTTGCCTGCCTGTCGAT 60.437 61.111 0.00 0.00 0.00 3.59
397 400 2.758089 GCTTGCCTGCCTGTCGATG 61.758 63.158 0.00 0.00 0.00 3.84
398 401 1.376424 CTTGCCTGCCTGTCGATGT 60.376 57.895 0.00 0.00 0.00 3.06
399 402 0.957395 CTTGCCTGCCTGTCGATGTT 60.957 55.000 0.00 0.00 0.00 2.71
400 403 0.323302 TTGCCTGCCTGTCGATGTTA 59.677 50.000 0.00 0.00 0.00 2.41
401 404 0.323302 TGCCTGCCTGTCGATGTTAA 59.677 50.000 0.00 0.00 0.00 2.01
402 405 1.065491 TGCCTGCCTGTCGATGTTAAT 60.065 47.619 0.00 0.00 0.00 1.40
403 406 2.169561 TGCCTGCCTGTCGATGTTAATA 59.830 45.455 0.00 0.00 0.00 0.98
404 407 3.181455 TGCCTGCCTGTCGATGTTAATAT 60.181 43.478 0.00 0.00 0.00 1.28
405 408 3.815401 GCCTGCCTGTCGATGTTAATATT 59.185 43.478 0.00 0.00 0.00 1.28
406 409 4.275936 GCCTGCCTGTCGATGTTAATATTT 59.724 41.667 0.00 0.00 0.00 1.40
407 410 5.560953 GCCTGCCTGTCGATGTTAATATTTC 60.561 44.000 0.00 0.00 0.00 2.17
408 411 5.333339 CCTGCCTGTCGATGTTAATATTTCG 60.333 44.000 0.00 0.00 0.00 3.46
409 412 5.353111 TGCCTGTCGATGTTAATATTTCGA 58.647 37.500 5.98 5.98 38.20 3.71
410 413 5.462068 TGCCTGTCGATGTTAATATTTCGAG 59.538 40.000 9.61 1.84 40.85 4.04
411 414 5.462398 GCCTGTCGATGTTAATATTTCGAGT 59.538 40.000 9.61 0.00 40.85 4.18
412 415 6.639686 GCCTGTCGATGTTAATATTTCGAGTA 59.360 38.462 9.61 3.27 40.85 2.59
413 416 7.168637 GCCTGTCGATGTTAATATTTCGAGTAA 59.831 37.037 9.61 0.67 40.85 2.24
414 417 9.193133 CCTGTCGATGTTAATATTTCGAGTAAT 57.807 33.333 9.61 0.00 40.85 1.89
416 419 9.961265 TGTCGATGTTAATATTTCGAGTAATCT 57.039 29.630 9.61 0.00 40.85 2.40
429 432 8.708075 TTTCGAGTAATCTGAAATGTTTTTCG 57.292 30.769 6.24 0.00 43.49 3.46
430 433 6.304126 TCGAGTAATCTGAAATGTTTTTCGC 58.696 36.000 0.00 0.00 43.49 4.70
431 434 5.508224 CGAGTAATCTGAAATGTTTTTCGCC 59.492 40.000 0.00 0.00 43.49 5.54
432 435 5.390613 AGTAATCTGAAATGTTTTTCGCCG 58.609 37.500 0.00 0.00 43.49 6.46
433 436 3.915437 ATCTGAAATGTTTTTCGCCGT 57.085 38.095 0.00 0.00 43.49 5.68
434 437 2.993545 TCTGAAATGTTTTTCGCCGTG 58.006 42.857 0.00 0.00 43.49 4.94
435 438 2.614520 TCTGAAATGTTTTTCGCCGTGA 59.385 40.909 0.00 0.00 43.49 4.35
436 439 3.252215 TCTGAAATGTTTTTCGCCGTGAT 59.748 39.130 0.00 0.00 43.49 3.06
437 440 3.304257 TGAAATGTTTTTCGCCGTGATG 58.696 40.909 0.00 0.00 43.49 3.07
438 441 3.243234 TGAAATGTTTTTCGCCGTGATGT 60.243 39.130 0.00 0.00 43.49 3.06
439 442 2.330231 ATGTTTTTCGCCGTGATGTG 57.670 45.000 0.00 0.00 0.00 3.21
440 443 1.300481 TGTTTTTCGCCGTGATGTGA 58.700 45.000 0.00 0.00 0.00 3.58
441 444 1.671328 TGTTTTTCGCCGTGATGTGAA 59.329 42.857 0.00 0.00 33.19 3.18
442 445 2.292016 TGTTTTTCGCCGTGATGTGAAT 59.708 40.909 0.00 0.00 34.92 2.57
443 446 2.610219 TTTTCGCCGTGATGTGAATG 57.390 45.000 0.00 0.00 34.92 2.67
444 447 1.518325 TTTCGCCGTGATGTGAATGT 58.482 45.000 0.00 0.00 34.92 2.71
445 448 1.518325 TTCGCCGTGATGTGAATGTT 58.482 45.000 0.00 0.00 30.21 2.71
446 449 1.518325 TCGCCGTGATGTGAATGTTT 58.482 45.000 0.00 0.00 0.00 2.83
447 450 1.463056 TCGCCGTGATGTGAATGTTTC 59.537 47.619 0.00 0.00 0.00 2.78
448 451 1.786575 CGCCGTGATGTGAATGTTTCG 60.787 52.381 0.00 0.00 0.00 3.46
449 452 1.465689 GCCGTGATGTGAATGTTTCGG 60.466 52.381 0.00 0.00 39.71 4.30
450 453 1.465689 CCGTGATGTGAATGTTTCGGC 60.466 52.381 0.00 0.00 0.00 5.54
451 454 1.464608 CGTGATGTGAATGTTTCGGCT 59.535 47.619 0.00 0.00 0.00 5.52
452 455 2.670905 CGTGATGTGAATGTTTCGGCTA 59.329 45.455 0.00 0.00 0.00 3.93
453 456 3.309682 CGTGATGTGAATGTTTCGGCTAT 59.690 43.478 0.00 0.00 0.00 2.97
454 457 4.201812 CGTGATGTGAATGTTTCGGCTATT 60.202 41.667 0.00 0.00 0.00 1.73
455 458 5.266242 GTGATGTGAATGTTTCGGCTATTC 58.734 41.667 0.00 0.00 0.00 1.75
456 459 5.065218 GTGATGTGAATGTTTCGGCTATTCT 59.935 40.000 0.00 0.00 33.21 2.40
457 460 4.944962 TGTGAATGTTTCGGCTATTCTG 57.055 40.909 0.00 0.00 33.21 3.02
458 461 4.574892 TGTGAATGTTTCGGCTATTCTGA 58.425 39.130 0.00 0.00 33.21 3.27
459 462 5.000591 TGTGAATGTTTCGGCTATTCTGAA 58.999 37.500 0.00 0.00 38.26 3.02
460 463 5.471797 TGTGAATGTTTCGGCTATTCTGAAA 59.528 36.000 0.00 0.00 45.22 2.69
468 471 6.877611 TTCGGCTATTCTGAAATATTTCCC 57.122 37.500 22.42 14.18 37.14 3.97
469 472 6.187727 TCGGCTATTCTGAAATATTTCCCT 57.812 37.500 22.42 9.15 36.36 4.20
470 473 6.231211 TCGGCTATTCTGAAATATTTCCCTC 58.769 40.000 22.42 2.14 36.36 4.30
471 474 6.043243 TCGGCTATTCTGAAATATTTCCCTCT 59.957 38.462 22.42 9.74 36.36 3.69
472 475 6.370166 CGGCTATTCTGAAATATTTCCCTCTC 59.630 42.308 22.42 8.08 36.36 3.20
473 476 7.227156 GGCTATTCTGAAATATTTCCCTCTCA 58.773 38.462 22.42 5.56 36.36 3.27
474 477 7.887495 GGCTATTCTGAAATATTTCCCTCTCAT 59.113 37.037 22.42 10.27 36.36 2.90
475 478 8.945057 GCTATTCTGAAATATTTCCCTCTCATC 58.055 37.037 22.42 5.33 36.36 2.92
478 481 8.743085 TTCTGAAATATTTCCCTCTCATCTTG 57.257 34.615 22.42 0.00 36.36 3.02
479 482 6.769822 TCTGAAATATTTCCCTCTCATCTTGC 59.230 38.462 22.42 0.00 36.36 4.01
480 483 6.425735 TGAAATATTTCCCTCTCATCTTGCA 58.574 36.000 22.42 0.00 36.36 4.08
481 484 7.064866 TGAAATATTTCCCTCTCATCTTGCAT 58.935 34.615 22.42 0.00 36.36 3.96
482 485 7.562454 TGAAATATTTCCCTCTCATCTTGCATT 59.438 33.333 22.42 0.00 36.36 3.56
483 486 6.896021 ATATTTCCCTCTCATCTTGCATTG 57.104 37.500 0.00 0.00 0.00 2.82
484 487 3.726557 TTCCCTCTCATCTTGCATTGT 57.273 42.857 0.00 0.00 0.00 2.71
485 488 2.995283 TCCCTCTCATCTTGCATTGTG 58.005 47.619 0.00 0.00 0.00 3.33
486 489 2.573009 TCCCTCTCATCTTGCATTGTGA 59.427 45.455 0.00 0.00 0.00 3.58
487 490 3.201487 TCCCTCTCATCTTGCATTGTGAT 59.799 43.478 0.00 0.00 0.00 3.06
488 491 3.315470 CCCTCTCATCTTGCATTGTGATG 59.685 47.826 11.04 11.04 38.97 3.07
489 492 3.945921 CCTCTCATCTTGCATTGTGATGT 59.054 43.478 14.64 0.00 38.78 3.06
490 493 4.398358 CCTCTCATCTTGCATTGTGATGTT 59.602 41.667 14.64 0.00 38.78 2.71
491 494 5.105877 CCTCTCATCTTGCATTGTGATGTTT 60.106 40.000 14.64 0.00 38.78 2.83
492 495 6.094464 CCTCTCATCTTGCATTGTGATGTTTA 59.906 38.462 14.64 5.79 38.78 2.01
493 496 7.201794 CCTCTCATCTTGCATTGTGATGTTTAT 60.202 37.037 14.64 0.00 38.78 1.40
494 497 8.058667 TCTCATCTTGCATTGTGATGTTTATT 57.941 30.769 14.64 0.00 38.78 1.40
495 498 8.525316 TCTCATCTTGCATTGTGATGTTTATTT 58.475 29.630 14.64 0.00 38.78 1.40
496 499 8.692110 TCATCTTGCATTGTGATGTTTATTTC 57.308 30.769 14.64 0.00 38.78 2.17
497 500 7.760794 TCATCTTGCATTGTGATGTTTATTTCC 59.239 33.333 14.64 0.00 38.78 3.13
498 501 6.092092 TCTTGCATTGTGATGTTTATTTCCG 58.908 36.000 0.00 0.00 35.63 4.30
499 502 4.172505 TGCATTGTGATGTTTATTTCCGC 58.827 39.130 0.00 0.00 35.63 5.54
500 503 4.082300 TGCATTGTGATGTTTATTTCCGCT 60.082 37.500 0.00 0.00 35.63 5.52
501 504 5.124617 TGCATTGTGATGTTTATTTCCGCTA 59.875 36.000 0.00 0.00 35.63 4.26
502 505 6.033341 GCATTGTGATGTTTATTTCCGCTAA 58.967 36.000 0.00 0.00 35.63 3.09
503 506 6.697019 GCATTGTGATGTTTATTTCCGCTAAT 59.303 34.615 0.00 0.00 35.63 1.73
504 507 7.096477 GCATTGTGATGTTTATTTCCGCTAATC 60.096 37.037 0.00 0.00 35.63 1.75
505 508 7.624360 TTGTGATGTTTATTTCCGCTAATCT 57.376 32.000 0.00 0.00 0.00 2.40
506 509 7.015226 TGTGATGTTTATTTCCGCTAATCTG 57.985 36.000 0.00 0.00 0.00 2.90
507 510 6.821160 TGTGATGTTTATTTCCGCTAATCTGA 59.179 34.615 0.00 0.00 0.00 3.27
508 511 7.335673 TGTGATGTTTATTTCCGCTAATCTGAA 59.664 33.333 0.00 0.00 0.00 3.02
509 512 8.181573 GTGATGTTTATTTCCGCTAATCTGAAA 58.818 33.333 0.00 0.00 33.47 2.69
510 513 8.902806 TGATGTTTATTTCCGCTAATCTGAAAT 58.097 29.630 0.00 0.00 40.30 2.17
520 523 9.832445 TTCCGCTAATCTGAAATATTTTACTCT 57.168 29.630 1.43 0.00 0.00 3.24
521 524 9.261180 TCCGCTAATCTGAAATATTTTACTCTG 57.739 33.333 1.43 0.00 0.00 3.35
522 525 9.261180 CCGCTAATCTGAAATATTTTACTCTGA 57.739 33.333 1.43 0.01 0.00 3.27
529 532 9.671279 TCTGAAATATTTTACTCTGATCTTGCA 57.329 29.630 1.43 0.00 0.00 4.08
544 547 4.471904 TCTTGCATAAGATGTTCGAGGT 57.528 40.909 0.00 0.00 37.99 3.85
545 548 4.433615 TCTTGCATAAGATGTTCGAGGTC 58.566 43.478 0.00 0.00 37.99 3.85
546 549 3.885724 TGCATAAGATGTTCGAGGTCA 57.114 42.857 0.00 0.00 0.00 4.02
547 550 3.785486 TGCATAAGATGTTCGAGGTCAG 58.215 45.455 0.00 0.00 0.00 3.51
548 551 3.126831 GCATAAGATGTTCGAGGTCAGG 58.873 50.000 0.00 0.00 0.00 3.86
549 552 3.430929 GCATAAGATGTTCGAGGTCAGGT 60.431 47.826 0.00 0.00 0.00 4.00
550 553 4.759782 CATAAGATGTTCGAGGTCAGGTT 58.240 43.478 0.00 0.00 0.00 3.50
551 554 2.751166 AGATGTTCGAGGTCAGGTTG 57.249 50.000 0.00 0.00 0.00 3.77
552 555 1.971357 AGATGTTCGAGGTCAGGTTGT 59.029 47.619 0.00 0.00 0.00 3.32
553 556 2.368875 AGATGTTCGAGGTCAGGTTGTT 59.631 45.455 0.00 0.00 0.00 2.83
554 557 1.948104 TGTTCGAGGTCAGGTTGTTG 58.052 50.000 0.00 0.00 0.00 3.33
555 558 1.208535 TGTTCGAGGTCAGGTTGTTGT 59.791 47.619 0.00 0.00 0.00 3.32
556 559 2.431419 TGTTCGAGGTCAGGTTGTTGTA 59.569 45.455 0.00 0.00 0.00 2.41
557 560 3.118702 TGTTCGAGGTCAGGTTGTTGTAA 60.119 43.478 0.00 0.00 0.00 2.41
558 561 3.380479 TCGAGGTCAGGTTGTTGTAAG 57.620 47.619 0.00 0.00 0.00 2.34
559 562 2.036733 TCGAGGTCAGGTTGTTGTAAGG 59.963 50.000 0.00 0.00 0.00 2.69
560 563 2.036733 CGAGGTCAGGTTGTTGTAAGGA 59.963 50.000 0.00 0.00 0.00 3.36
561 564 3.306780 CGAGGTCAGGTTGTTGTAAGGAT 60.307 47.826 0.00 0.00 0.00 3.24
562 565 4.081862 CGAGGTCAGGTTGTTGTAAGGATA 60.082 45.833 0.00 0.00 0.00 2.59
563 566 5.395324 CGAGGTCAGGTTGTTGTAAGGATAT 60.395 44.000 0.00 0.00 0.00 1.63
564 567 5.745227 AGGTCAGGTTGTTGTAAGGATATG 58.255 41.667 0.00 0.00 0.00 1.78
565 568 5.487488 AGGTCAGGTTGTTGTAAGGATATGA 59.513 40.000 0.00 0.00 0.00 2.15
566 569 5.817816 GGTCAGGTTGTTGTAAGGATATGAG 59.182 44.000 0.00 0.00 0.00 2.90
567 570 6.407202 GTCAGGTTGTTGTAAGGATATGAGT 58.593 40.000 0.00 0.00 0.00 3.41
568 571 6.313905 GTCAGGTTGTTGTAAGGATATGAGTG 59.686 42.308 0.00 0.00 0.00 3.51
569 572 5.586243 CAGGTTGTTGTAAGGATATGAGTGG 59.414 44.000 0.00 0.00 0.00 4.00
570 573 4.881850 GGTTGTTGTAAGGATATGAGTGGG 59.118 45.833 0.00 0.00 0.00 4.61
571 574 5.497474 GTTGTTGTAAGGATATGAGTGGGT 58.503 41.667 0.00 0.00 0.00 4.51
572 575 5.353394 TGTTGTAAGGATATGAGTGGGTC 57.647 43.478 0.00 0.00 0.00 4.46
573 576 4.163458 TGTTGTAAGGATATGAGTGGGTCC 59.837 45.833 0.00 0.00 0.00 4.46
574 577 4.002256 TGTAAGGATATGAGTGGGTCCA 57.998 45.455 0.00 0.00 33.12 4.02
575 578 4.566837 TGTAAGGATATGAGTGGGTCCAT 58.433 43.478 0.00 0.00 33.12 3.41
576 579 4.347876 TGTAAGGATATGAGTGGGTCCATG 59.652 45.833 0.00 0.00 33.12 3.66
577 580 2.342659 AGGATATGAGTGGGTCCATGG 58.657 52.381 4.97 4.97 33.12 3.66
578 581 2.089982 AGGATATGAGTGGGTCCATGGA 60.090 50.000 11.44 11.44 33.12 3.41
579 582 2.304180 GGATATGAGTGGGTCCATGGAG 59.696 54.545 16.81 0.00 0.00 3.86
580 583 1.806496 TATGAGTGGGTCCATGGAGG 58.194 55.000 16.81 0.00 39.47 4.30
581 584 0.990282 ATGAGTGGGTCCATGGAGGG 60.990 60.000 16.81 0.00 38.24 4.30
582 585 1.616628 GAGTGGGTCCATGGAGGGT 60.617 63.158 16.81 0.00 38.24 4.34
583 586 1.616628 AGTGGGTCCATGGAGGGTC 60.617 63.158 16.81 2.62 38.24 4.46
584 587 2.286121 TGGGTCCATGGAGGGTCC 60.286 66.667 16.81 12.86 38.24 4.46
585 588 2.042930 GGGTCCATGGAGGGTCCT 59.957 66.667 16.81 0.00 37.46 3.85
586 589 1.619669 GGGTCCATGGAGGGTCCTT 60.620 63.158 16.81 0.00 37.46 3.36
587 590 1.214992 GGGTCCATGGAGGGTCCTTT 61.215 60.000 16.81 0.00 37.46 3.11
588 591 0.704664 GGTCCATGGAGGGTCCTTTT 59.295 55.000 16.81 0.00 37.46 2.27
589 592 1.077169 GGTCCATGGAGGGTCCTTTTT 59.923 52.381 16.81 0.00 37.46 1.94
590 593 2.171003 GTCCATGGAGGGTCCTTTTTG 58.829 52.381 16.81 0.00 37.46 2.44
591 594 1.786441 TCCATGGAGGGTCCTTTTTGT 59.214 47.619 11.44 0.00 37.46 2.83
592 595 1.895131 CCATGGAGGGTCCTTTTTGTG 59.105 52.381 5.56 0.00 37.46 3.33
593 596 1.895131 CATGGAGGGTCCTTTTTGTGG 59.105 52.381 0.00 0.00 37.46 4.17
594 597 0.187361 TGGAGGGTCCTTTTTGTGGG 59.813 55.000 0.00 0.00 37.46 4.61
595 598 1.185618 GGAGGGTCCTTTTTGTGGGC 61.186 60.000 0.00 0.00 32.53 5.36
596 599 0.469144 GAGGGTCCTTTTTGTGGGCA 60.469 55.000 0.00 0.00 0.00 5.36
597 600 0.469892 AGGGTCCTTTTTGTGGGCAG 60.470 55.000 0.00 0.00 0.00 4.85
598 601 0.759060 GGGTCCTTTTTGTGGGCAGT 60.759 55.000 0.00 0.00 0.00 4.40
599 602 1.119684 GGTCCTTTTTGTGGGCAGTT 58.880 50.000 0.00 0.00 0.00 3.16
600 603 2.312390 GGTCCTTTTTGTGGGCAGTTA 58.688 47.619 0.00 0.00 0.00 2.24
601 604 2.897326 GGTCCTTTTTGTGGGCAGTTAT 59.103 45.455 0.00 0.00 0.00 1.89
602 605 3.306019 GGTCCTTTTTGTGGGCAGTTATG 60.306 47.826 0.00 0.00 0.00 1.90
666 670 1.112315 TGCACCCCGAACTTTGCATT 61.112 50.000 0.00 0.00 40.01 3.56
779 783 2.092321 ACATCTGTCGCTACTCCTACCT 60.092 50.000 0.00 0.00 0.00 3.08
853 857 5.300286 GCACCAAATCCTAACATCTAATGCT 59.700 40.000 0.00 0.00 0.00 3.79
855 859 6.543465 CACCAAATCCTAACATCTAATGCTGA 59.457 38.462 0.00 0.00 0.00 4.26
860 864 5.933617 TCCTAACATCTAATGCTGAATGCT 58.066 37.500 0.00 0.00 43.37 3.79
873 877 2.040012 CTGAATGCTCCATCCTAGCCAT 59.960 50.000 0.00 0.00 39.30 4.40
883 887 3.309296 CATCCTAGCCATATACCGGGAT 58.691 50.000 3.60 3.60 33.05 3.85
888 892 0.679960 GCCATATACCGGGATTGGGC 60.680 60.000 21.52 21.52 0.00 5.36
896 900 4.740822 GGGATTGGGCCACACGCT 62.741 66.667 5.23 0.00 37.74 5.07
994 998 2.589540 CCAGGCCTGCCGTCAATA 59.410 61.111 28.39 0.00 41.95 1.90
1009 1013 1.000270 AATACCACCATGGCGCCAA 60.000 52.632 36.33 16.31 42.67 4.52
1394 1734 0.041576 GAACACGCCGACCAAAGTTC 60.042 55.000 0.00 0.00 0.00 3.01
1427 1767 1.668826 TCCTATGCCACCAAACCTCT 58.331 50.000 0.00 0.00 0.00 3.69
1586 1926 0.032678 GCGACGATCATCACCATCCT 59.967 55.000 0.00 0.00 0.00 3.24
1593 1933 3.469970 ATCACCATCCTGCGGCGA 61.470 61.111 12.98 0.00 0.00 5.54
1766 2106 2.282887 GCCGGACCCCATGTTTGT 60.283 61.111 5.05 0.00 0.00 2.83
1791 2131 2.735772 TTCCTCTGGATCCCGCTGC 61.736 63.158 9.90 0.00 0.00 5.25
1829 2169 0.399806 GAGAGGATGGGGAGAAGCCT 60.400 60.000 0.00 0.00 36.66 4.58
1980 2324 3.801997 CGAGGGGCCAGGATGCTT 61.802 66.667 4.39 0.00 31.97 3.91
1981 2325 2.685999 GAGGGGCCAGGATGCTTT 59.314 61.111 4.39 0.00 31.97 3.51
1982 2326 1.454663 GAGGGGCCAGGATGCTTTC 60.455 63.158 4.39 0.00 31.97 2.62
1983 2327 2.442830 GGGGCCAGGATGCTTTCC 60.443 66.667 4.39 0.00 45.85 3.13
2001 2345 6.183360 TGCTTTCCGGTCTGTTTTTCTTAATT 60.183 34.615 0.00 0.00 0.00 1.40
2053 2400 2.930682 GTTCGATTCCTGCTAAGTGTCC 59.069 50.000 0.00 0.00 0.00 4.02
2058 2405 4.579869 GATTCCTGCTAAGTGTCCTTTCA 58.420 43.478 0.00 0.00 31.89 2.69
2100 2447 8.764524 AGACACAAAGAGACAATATAAGTCAC 57.235 34.615 9.97 4.81 38.46 3.67
2130 2477 7.253905 TGTTATGCCCTCTACTTTCTTACTT 57.746 36.000 0.00 0.00 0.00 2.24
2144 2491 6.542370 ACTTTCTTACTTTGCTGCTCTGTAAA 59.458 34.615 0.00 0.00 0.00 2.01
2145 2492 6.545504 TTCTTACTTTGCTGCTCTGTAAAG 57.454 37.500 12.91 12.91 42.55 1.85
2147 2494 6.755206 TCTTACTTTGCTGCTCTGTAAAGTA 58.245 36.000 18.52 18.52 45.90 2.24
2148 2495 6.645415 TCTTACTTTGCTGCTCTGTAAAGTAC 59.355 38.462 20.60 0.00 46.59 2.73
2149 2496 4.065789 ACTTTGCTGCTCTGTAAAGTACC 58.934 43.478 16.62 0.00 45.90 3.34
2150 2497 3.762407 TTGCTGCTCTGTAAAGTACCA 57.238 42.857 0.00 0.00 0.00 3.25
2151 2498 3.981071 TGCTGCTCTGTAAAGTACCAT 57.019 42.857 0.00 0.00 0.00 3.55
2152 2499 3.599343 TGCTGCTCTGTAAAGTACCATG 58.401 45.455 0.00 0.00 0.00 3.66
2153 2500 2.352960 GCTGCTCTGTAAAGTACCATGC 59.647 50.000 0.00 0.00 0.00 4.06
2154 2501 2.939103 CTGCTCTGTAAAGTACCATGCC 59.061 50.000 0.00 0.00 0.00 4.40
2155 2502 2.571653 TGCTCTGTAAAGTACCATGCCT 59.428 45.455 0.00 0.00 0.00 4.75
2156 2503 2.939103 GCTCTGTAAAGTACCATGCCTG 59.061 50.000 0.00 0.00 0.00 4.85
2210 2560 3.825328 GAGTATCCCGTCCCACTACTTA 58.175 50.000 0.00 0.00 0.00 2.24
2224 2574 7.231115 GTCCCACTACTTATTTCTACTCCCTAG 59.769 44.444 0.00 0.00 0.00 3.02
2299 2649 5.596845 TGAAGCATCAAAACTAAACCAACC 58.403 37.500 0.00 0.00 30.99 3.77
2311 2661 6.074698 ACTAAACCAACCTTGCCATACTAT 57.925 37.500 0.00 0.00 0.00 2.12
2313 2663 7.052248 ACTAAACCAACCTTGCCATACTATAC 58.948 38.462 0.00 0.00 0.00 1.47
2314 2664 5.710409 AACCAACCTTGCCATACTATACT 57.290 39.130 0.00 0.00 0.00 2.12
2315 2665 6.818281 AACCAACCTTGCCATACTATACTA 57.182 37.500 0.00 0.00 0.00 1.82
2316 2666 6.420913 ACCAACCTTGCCATACTATACTAG 57.579 41.667 0.00 0.00 0.00 2.57
2317 2667 6.141083 ACCAACCTTGCCATACTATACTAGA 58.859 40.000 0.00 0.00 0.00 2.43
2318 2668 6.267928 ACCAACCTTGCCATACTATACTAGAG 59.732 42.308 0.00 0.00 0.00 2.43
2319 2669 5.986501 ACCTTGCCATACTATACTAGAGC 57.013 43.478 0.00 0.00 0.00 4.09
2320 2670 5.394738 ACCTTGCCATACTATACTAGAGCA 58.605 41.667 0.00 0.00 0.00 4.26
2321 2671 5.839063 ACCTTGCCATACTATACTAGAGCAA 59.161 40.000 0.00 0.00 0.00 3.91
2322 2672 6.498651 ACCTTGCCATACTATACTAGAGCAAT 59.501 38.462 0.00 0.00 0.00 3.56
2323 2673 7.016661 ACCTTGCCATACTATACTAGAGCAATT 59.983 37.037 0.00 0.00 0.00 2.32
2324 2674 8.531982 CCTTGCCATACTATACTAGAGCAATTA 58.468 37.037 0.00 0.00 0.00 1.40
2348 2698 3.267483 TGCCAAATTAGTTCTAGGTCGC 58.733 45.455 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.224007 AAAGTGCGGGGGCAAGGAT 62.224 57.895 0.00 0.00 0.00 3.24
2 3 3.683937 CAAAGTGCGGGGGCAAGG 61.684 66.667 0.00 0.00 0.00 3.61
3 4 1.586154 CTACAAAGTGCGGGGGCAAG 61.586 60.000 0.00 0.00 0.00 4.01
6 7 3.440415 GCTACAAAGTGCGGGGGC 61.440 66.667 0.00 0.00 0.00 5.80
7 8 1.303317 AAGCTACAAAGTGCGGGGG 60.303 57.895 0.00 0.00 0.00 5.40
8 9 1.305930 GGAAGCTACAAAGTGCGGGG 61.306 60.000 0.00 0.00 0.00 5.73
9 10 0.321653 AGGAAGCTACAAAGTGCGGG 60.322 55.000 0.00 0.00 0.00 6.13
10 11 1.079503 GAGGAAGCTACAAAGTGCGG 58.920 55.000 0.00 0.00 0.00 5.69
11 12 1.079503 GGAGGAAGCTACAAAGTGCG 58.920 55.000 0.00 0.00 0.00 5.34
12 13 2.289694 TGAGGAGGAAGCTACAAAGTGC 60.290 50.000 0.00 0.00 0.00 4.40
13 14 3.594134 CTGAGGAGGAAGCTACAAAGTG 58.406 50.000 0.00 0.00 0.00 3.16
14 15 2.027653 GCTGAGGAGGAAGCTACAAAGT 60.028 50.000 0.00 0.00 36.47 2.66
15 16 2.027745 TGCTGAGGAGGAAGCTACAAAG 60.028 50.000 0.00 0.00 40.21 2.77
16 17 1.977854 TGCTGAGGAGGAAGCTACAAA 59.022 47.619 0.00 0.00 40.21 2.83
17 18 1.552337 CTGCTGAGGAGGAAGCTACAA 59.448 52.381 0.00 0.00 40.21 2.41
18 19 1.189752 CTGCTGAGGAGGAAGCTACA 58.810 55.000 0.00 0.00 40.21 2.74
19 20 0.463620 CCTGCTGAGGAGGAAGCTAC 59.536 60.000 15.68 0.00 42.93 3.58
20 21 0.689080 CCCTGCTGAGGAGGAAGCTA 60.689 60.000 22.54 0.00 42.93 3.32
21 22 1.994507 CCCTGCTGAGGAGGAAGCT 60.995 63.158 22.54 0.00 42.93 3.74
22 23 1.557269 TTCCCTGCTGAGGAGGAAGC 61.557 60.000 22.54 0.00 42.93 3.86
23 24 0.987294 TTTCCCTGCTGAGGAGGAAG 59.013 55.000 22.54 5.72 42.93 3.46
24 25 0.987294 CTTTCCCTGCTGAGGAGGAA 59.013 55.000 22.54 10.81 42.93 3.36
25 26 0.117140 TCTTTCCCTGCTGAGGAGGA 59.883 55.000 22.54 4.81 42.93 3.71
26 27 1.211456 ATCTTTCCCTGCTGAGGAGG 58.789 55.000 13.69 13.69 42.93 4.30
27 28 2.238144 TGAATCTTTCCCTGCTGAGGAG 59.762 50.000 0.00 0.00 42.93 3.69
28 29 2.026822 GTGAATCTTTCCCTGCTGAGGA 60.027 50.000 0.00 0.00 42.93 3.71
49 50 1.450312 GGTCAGAGATTGCGTGGGG 60.450 63.158 0.00 0.00 0.00 4.96
55 56 6.625873 CTTATAAAAGGGGTCAGAGATTGC 57.374 41.667 0.00 0.00 0.00 3.56
92 94 2.286872 CTCTGCTATGTGGAGGCAAAG 58.713 52.381 0.00 0.00 35.49 2.77
108 110 2.158449 CACGGTGCTTTAAAGAGCTCTG 59.842 50.000 19.06 12.85 44.20 3.35
109 111 2.417719 CACGGTGCTTTAAAGAGCTCT 58.582 47.619 19.48 11.45 43.11 4.09
126 128 7.656468 CATAACAATGTAACTTCATTTGCACG 58.344 34.615 0.00 0.00 36.10 5.34
168 171 8.651389 CAAAGGGATAGATAAGTCATAGGTTGA 58.349 37.037 0.00 0.00 0.00 3.18
175 178 7.166851 CAGATGCAAAGGGATAGATAAGTCAT 58.833 38.462 0.00 0.00 0.00 3.06
201 204 2.002586 CTCGTCCATGCCAACTAAGTG 58.997 52.381 0.00 0.00 0.00 3.16
215 218 4.361253 TGCAAAGCACTCTCGTCC 57.639 55.556 0.00 0.00 31.71 4.79
224 227 1.891919 GAGTCCGGTGTGCAAAGCA 60.892 57.895 6.92 0.00 35.60 3.91
225 228 2.617274 GGAGTCCGGTGTGCAAAGC 61.617 63.158 0.00 0.00 0.00 3.51
226 229 0.951040 GAGGAGTCCGGTGTGCAAAG 60.951 60.000 2.76 0.00 0.00 2.77
227 230 1.070786 GAGGAGTCCGGTGTGCAAA 59.929 57.895 2.76 0.00 0.00 3.68
228 231 1.816863 GAGAGGAGTCCGGTGTGCAA 61.817 60.000 2.76 0.00 0.00 4.08
229 232 2.203640 AGAGGAGTCCGGTGTGCA 60.204 61.111 2.76 0.00 0.00 4.57
230 233 2.574399 GAGAGGAGTCCGGTGTGC 59.426 66.667 2.76 0.00 0.00 4.57
231 234 0.972983 ATGGAGAGGAGTCCGGTGTG 60.973 60.000 2.76 0.00 39.81 3.82
232 235 0.252284 AATGGAGAGGAGTCCGGTGT 60.252 55.000 2.76 0.00 39.81 4.16
233 236 0.905357 AAATGGAGAGGAGTCCGGTG 59.095 55.000 2.76 0.00 39.81 4.94
234 237 1.196012 GAAATGGAGAGGAGTCCGGT 58.804 55.000 2.76 0.00 39.81 5.28
235 238 1.134670 GTGAAATGGAGAGGAGTCCGG 60.135 57.143 2.76 0.00 39.81 5.14
236 239 1.827969 AGTGAAATGGAGAGGAGTCCG 59.172 52.381 2.76 0.00 39.81 4.79
237 240 2.569404 ACAGTGAAATGGAGAGGAGTCC 59.431 50.000 0.00 0.00 37.10 3.85
238 241 3.368948 GGACAGTGAAATGGAGAGGAGTC 60.369 52.174 0.00 0.00 0.00 3.36
239 242 2.569404 GGACAGTGAAATGGAGAGGAGT 59.431 50.000 0.00 0.00 0.00 3.85
240 243 2.836981 AGGACAGTGAAATGGAGAGGAG 59.163 50.000 0.00 0.00 0.00 3.69
241 244 2.834549 GAGGACAGTGAAATGGAGAGGA 59.165 50.000 0.00 0.00 0.00 3.71
242 245 2.093235 GGAGGACAGTGAAATGGAGAGG 60.093 54.545 0.00 0.00 0.00 3.69
243 246 2.568956 TGGAGGACAGTGAAATGGAGAG 59.431 50.000 0.00 0.00 0.00 3.20
244 247 2.619931 TGGAGGACAGTGAAATGGAGA 58.380 47.619 0.00 0.00 0.00 3.71
245 248 3.641434 ATGGAGGACAGTGAAATGGAG 57.359 47.619 0.00 0.00 0.00 3.86
246 249 4.387026 AAATGGAGGACAGTGAAATGGA 57.613 40.909 0.00 0.00 0.00 3.41
247 250 4.082026 GGAAAATGGAGGACAGTGAAATGG 60.082 45.833 0.00 0.00 0.00 3.16
248 251 4.082026 GGGAAAATGGAGGACAGTGAAATG 60.082 45.833 0.00 0.00 0.00 2.32
249 252 4.089361 GGGAAAATGGAGGACAGTGAAAT 58.911 43.478 0.00 0.00 0.00 2.17
250 253 3.117322 TGGGAAAATGGAGGACAGTGAAA 60.117 43.478 0.00 0.00 0.00 2.69
251 254 2.445145 TGGGAAAATGGAGGACAGTGAA 59.555 45.455 0.00 0.00 0.00 3.18
252 255 2.061848 TGGGAAAATGGAGGACAGTGA 58.938 47.619 0.00 0.00 0.00 3.41
253 256 2.584835 TGGGAAAATGGAGGACAGTG 57.415 50.000 0.00 0.00 0.00 3.66
254 257 3.833559 AATGGGAAAATGGAGGACAGT 57.166 42.857 0.00 0.00 0.00 3.55
255 258 5.240121 CAAAAATGGGAAAATGGAGGACAG 58.760 41.667 0.00 0.00 0.00 3.51
256 259 4.504689 GCAAAAATGGGAAAATGGAGGACA 60.505 41.667 0.00 0.00 0.00 4.02
257 260 4.002982 GCAAAAATGGGAAAATGGAGGAC 58.997 43.478 0.00 0.00 0.00 3.85
258 261 3.909364 AGCAAAAATGGGAAAATGGAGGA 59.091 39.130 0.00 0.00 0.00 3.71
259 262 4.019950 AGAGCAAAAATGGGAAAATGGAGG 60.020 41.667 0.00 0.00 0.00 4.30
260 263 4.933400 CAGAGCAAAAATGGGAAAATGGAG 59.067 41.667 0.00 0.00 0.00 3.86
261 264 4.592351 TCAGAGCAAAAATGGGAAAATGGA 59.408 37.500 0.00 0.00 0.00 3.41
262 265 4.897140 TCAGAGCAAAAATGGGAAAATGG 58.103 39.130 0.00 0.00 0.00 3.16
263 266 7.443259 AAATCAGAGCAAAAATGGGAAAATG 57.557 32.000 0.00 0.00 0.00 2.32
264 267 8.467963 AAAAATCAGAGCAAAAATGGGAAAAT 57.532 26.923 0.00 0.00 0.00 1.82
265 268 7.555554 TGAAAAATCAGAGCAAAAATGGGAAAA 59.444 29.630 0.00 0.00 0.00 2.29
266 269 7.052873 TGAAAAATCAGAGCAAAAATGGGAAA 58.947 30.769 0.00 0.00 0.00 3.13
267 270 6.590068 TGAAAAATCAGAGCAAAAATGGGAA 58.410 32.000 0.00 0.00 0.00 3.97
268 271 6.172136 TGAAAAATCAGAGCAAAAATGGGA 57.828 33.333 0.00 0.00 0.00 4.37
269 272 6.651643 TGATGAAAAATCAGAGCAAAAATGGG 59.348 34.615 0.00 0.00 0.00 4.00
270 273 7.148474 CCTGATGAAAAATCAGAGCAAAAATGG 60.148 37.037 15.27 0.00 46.25 3.16
271 274 7.386848 ACCTGATGAAAAATCAGAGCAAAAATG 59.613 33.333 15.27 0.45 46.25 2.32
272 275 7.447594 ACCTGATGAAAAATCAGAGCAAAAAT 58.552 30.769 15.27 0.00 46.25 1.82
273 276 6.819284 ACCTGATGAAAAATCAGAGCAAAAA 58.181 32.000 15.27 0.00 46.25 1.94
274 277 6.409524 ACCTGATGAAAAATCAGAGCAAAA 57.590 33.333 15.27 0.00 46.25 2.44
275 278 6.409524 AACCTGATGAAAAATCAGAGCAAA 57.590 33.333 15.27 0.00 46.25 3.68
276 279 6.409524 AAACCTGATGAAAAATCAGAGCAA 57.590 33.333 15.27 0.00 46.25 3.91
277 280 6.409524 AAAACCTGATGAAAAATCAGAGCA 57.590 33.333 15.27 0.00 46.25 4.26
299 302 9.899661 ACTGTAGGTATAAATACTGCATGAAAA 57.100 29.630 0.00 0.00 33.81 2.29
300 303 9.899661 AACTGTAGGTATAAATACTGCATGAAA 57.100 29.630 0.00 0.00 33.81 2.69
301 304 9.899661 AAACTGTAGGTATAAATACTGCATGAA 57.100 29.630 0.00 0.00 33.81 2.57
302 305 9.899661 AAAACTGTAGGTATAAATACTGCATGA 57.100 29.630 0.00 0.00 33.81 3.07
330 333 8.306680 TCCGACAACAAACAAAATAACAAAAA 57.693 26.923 0.00 0.00 0.00 1.94
331 334 7.063544 CCTCCGACAACAAACAAAATAACAAAA 59.936 33.333 0.00 0.00 0.00 2.44
332 335 6.531948 CCTCCGACAACAAACAAAATAACAAA 59.468 34.615 0.00 0.00 0.00 2.83
333 336 6.037098 CCTCCGACAACAAACAAAATAACAA 58.963 36.000 0.00 0.00 0.00 2.83
334 337 5.125739 ACCTCCGACAACAAACAAAATAACA 59.874 36.000 0.00 0.00 0.00 2.41
335 338 5.457473 CACCTCCGACAACAAACAAAATAAC 59.543 40.000 0.00 0.00 0.00 1.89
336 339 5.583495 CACCTCCGACAACAAACAAAATAA 58.417 37.500 0.00 0.00 0.00 1.40
337 340 4.498345 GCACCTCCGACAACAAACAAAATA 60.498 41.667 0.00 0.00 0.00 1.40
338 341 3.736740 GCACCTCCGACAACAAACAAAAT 60.737 43.478 0.00 0.00 0.00 1.82
339 342 2.416162 GCACCTCCGACAACAAACAAAA 60.416 45.455 0.00 0.00 0.00 2.44
340 343 1.133407 GCACCTCCGACAACAAACAAA 59.867 47.619 0.00 0.00 0.00 2.83
341 344 0.736053 GCACCTCCGACAACAAACAA 59.264 50.000 0.00 0.00 0.00 2.83
342 345 1.098712 GGCACCTCCGACAACAAACA 61.099 55.000 0.00 0.00 0.00 2.83
343 346 1.098712 TGGCACCTCCGACAACAAAC 61.099 55.000 0.00 0.00 37.80 2.93
344 347 0.817634 CTGGCACCTCCGACAACAAA 60.818 55.000 0.00 0.00 37.80 2.83
345 348 1.227823 CTGGCACCTCCGACAACAA 60.228 57.895 0.00 0.00 37.80 2.83
346 349 1.978455 AACTGGCACCTCCGACAACA 61.978 55.000 0.00 0.00 37.80 3.33
347 350 1.227853 AACTGGCACCTCCGACAAC 60.228 57.895 0.00 0.00 37.80 3.32
348 351 1.227823 CAACTGGCACCTCCGACAA 60.228 57.895 0.00 0.00 37.80 3.18
349 352 2.425592 CAACTGGCACCTCCGACA 59.574 61.111 0.00 0.00 37.80 4.35
350 353 1.961277 CACAACTGGCACCTCCGAC 60.961 63.158 0.00 0.00 37.80 4.79
351 354 2.425592 CACAACTGGCACCTCCGA 59.574 61.111 0.00 0.00 37.80 4.55
352 355 3.357079 GCACAACTGGCACCTCCG 61.357 66.667 0.00 0.00 37.80 4.63
353 356 2.203337 TGCACAACTGGCACCTCC 60.203 61.111 0.00 0.00 36.11 4.30
354 357 1.227943 TCTGCACAACTGGCACCTC 60.228 57.895 0.00 0.00 36.11 3.85
355 358 1.228063 CTCTGCACAACTGGCACCT 60.228 57.895 0.00 0.00 36.11 4.00
356 359 1.526917 ACTCTGCACAACTGGCACC 60.527 57.895 0.00 0.00 36.11 5.01
357 360 0.815213 TCACTCTGCACAACTGGCAC 60.815 55.000 0.00 0.00 36.11 5.01
358 361 0.533531 CTCACTCTGCACAACTGGCA 60.534 55.000 0.00 0.00 39.32 4.92
359 362 0.250038 TCTCACTCTGCACAACTGGC 60.250 55.000 0.00 0.00 0.00 4.85
360 363 1.793258 CTCTCACTCTGCACAACTGG 58.207 55.000 0.00 0.00 0.00 4.00
361 364 1.146637 GCTCTCACTCTGCACAACTG 58.853 55.000 0.00 0.00 0.00 3.16
362 365 1.047002 AGCTCTCACTCTGCACAACT 58.953 50.000 0.00 0.00 0.00 3.16
363 366 1.530293 CAAGCTCTCACTCTGCACAAC 59.470 52.381 0.00 0.00 0.00 3.32
364 367 1.875009 CAAGCTCTCACTCTGCACAA 58.125 50.000 0.00 0.00 0.00 3.33
365 368 0.602106 GCAAGCTCTCACTCTGCACA 60.602 55.000 0.00 0.00 0.00 4.57
366 369 1.297456 GGCAAGCTCTCACTCTGCAC 61.297 60.000 6.63 0.00 0.00 4.57
367 370 1.004080 GGCAAGCTCTCACTCTGCA 60.004 57.895 6.63 0.00 0.00 4.41
368 371 1.020333 CAGGCAAGCTCTCACTCTGC 61.020 60.000 0.00 0.00 0.00 4.26
369 372 1.020333 GCAGGCAAGCTCTCACTCTG 61.020 60.000 0.00 0.00 0.00 3.35
370 373 1.296068 GCAGGCAAGCTCTCACTCT 59.704 57.895 0.00 0.00 0.00 3.24
371 374 1.744741 GGCAGGCAAGCTCTCACTC 60.745 63.158 0.00 0.00 34.17 3.51
372 375 2.222727 AGGCAGGCAAGCTCTCACT 61.223 57.895 0.00 0.00 34.17 3.41
373 376 2.039405 CAGGCAGGCAAGCTCTCAC 61.039 63.158 0.00 0.00 34.17 3.51
374 377 2.350134 CAGGCAGGCAAGCTCTCA 59.650 61.111 0.00 0.00 34.17 3.27
375 378 1.744741 GACAGGCAGGCAAGCTCTC 60.745 63.158 0.00 0.00 34.17 3.20
376 379 2.350514 GACAGGCAGGCAAGCTCT 59.649 61.111 0.00 0.00 34.17 4.09
377 380 2.866085 ATCGACAGGCAGGCAAGCTC 62.866 60.000 0.00 0.00 34.17 4.09
378 381 2.964310 ATCGACAGGCAGGCAAGCT 61.964 57.895 0.00 0.00 34.17 3.74
379 382 2.437359 ATCGACAGGCAGGCAAGC 60.437 61.111 0.00 0.00 0.00 4.01
380 383 0.957395 AACATCGACAGGCAGGCAAG 60.957 55.000 0.00 0.00 0.00 4.01
381 384 0.323302 TAACATCGACAGGCAGGCAA 59.677 50.000 0.00 0.00 0.00 4.52
382 385 0.323302 TTAACATCGACAGGCAGGCA 59.677 50.000 0.00 0.00 0.00 4.75
383 386 1.668419 ATTAACATCGACAGGCAGGC 58.332 50.000 0.00 0.00 0.00 4.85
384 387 5.333339 CGAAATATTAACATCGACAGGCAGG 60.333 44.000 1.82 0.00 37.48 4.85
385 388 5.462068 TCGAAATATTAACATCGACAGGCAG 59.538 40.000 5.98 0.00 39.19 4.85
386 389 5.353111 TCGAAATATTAACATCGACAGGCA 58.647 37.500 5.98 0.00 39.19 4.75
387 390 5.462398 ACTCGAAATATTAACATCGACAGGC 59.538 40.000 5.98 0.00 39.19 4.85
388 391 8.570096 TTACTCGAAATATTAACATCGACAGG 57.430 34.615 5.98 1.27 39.19 4.00
390 393 9.961265 AGATTACTCGAAATATTAACATCGACA 57.039 29.630 5.98 0.00 39.19 4.35
403 406 9.329913 CGAAAAACATTTCAGATTACTCGAAAT 57.670 29.630 2.64 0.00 39.36 2.17
404 407 7.322699 GCGAAAAACATTTCAGATTACTCGAAA 59.677 33.333 0.00 0.00 33.48 3.46
405 408 6.795114 GCGAAAAACATTTCAGATTACTCGAA 59.205 34.615 0.00 0.00 0.00 3.71
406 409 6.304126 GCGAAAAACATTTCAGATTACTCGA 58.696 36.000 0.00 0.00 0.00 4.04
407 410 5.508224 GGCGAAAAACATTTCAGATTACTCG 59.492 40.000 0.00 0.00 0.00 4.18
408 411 5.508224 CGGCGAAAAACATTTCAGATTACTC 59.492 40.000 0.00 0.00 0.00 2.59
409 412 5.048991 ACGGCGAAAAACATTTCAGATTACT 60.049 36.000 16.62 0.00 0.00 2.24
410 413 5.059221 CACGGCGAAAAACATTTCAGATTAC 59.941 40.000 16.62 0.00 0.00 1.89
411 414 5.049336 TCACGGCGAAAAACATTTCAGATTA 60.049 36.000 16.62 0.00 0.00 1.75
412 415 3.980775 CACGGCGAAAAACATTTCAGATT 59.019 39.130 16.62 0.00 0.00 2.40
413 416 3.252215 TCACGGCGAAAAACATTTCAGAT 59.748 39.130 16.62 0.00 0.00 2.90
414 417 2.614520 TCACGGCGAAAAACATTTCAGA 59.385 40.909 16.62 0.00 0.00 3.27
415 418 2.993545 TCACGGCGAAAAACATTTCAG 58.006 42.857 16.62 0.00 0.00 3.02
416 419 3.243234 ACATCACGGCGAAAAACATTTCA 60.243 39.130 16.62 0.00 0.00 2.69
417 420 3.119463 CACATCACGGCGAAAAACATTTC 59.881 43.478 16.62 0.00 0.00 2.17
418 421 3.049206 CACATCACGGCGAAAAACATTT 58.951 40.909 16.62 0.00 0.00 2.32
419 422 2.292016 TCACATCACGGCGAAAAACATT 59.708 40.909 16.62 0.00 0.00 2.71
420 423 1.876799 TCACATCACGGCGAAAAACAT 59.123 42.857 16.62 0.00 0.00 2.71
421 424 1.300481 TCACATCACGGCGAAAAACA 58.700 45.000 16.62 0.00 0.00 2.83
422 425 2.392933 TTCACATCACGGCGAAAAAC 57.607 45.000 16.62 0.00 0.00 2.43
423 426 2.292016 ACATTCACATCACGGCGAAAAA 59.708 40.909 16.62 0.00 0.00 1.94
424 427 1.876799 ACATTCACATCACGGCGAAAA 59.123 42.857 16.62 0.00 0.00 2.29
425 428 1.518325 ACATTCACATCACGGCGAAA 58.482 45.000 16.62 0.00 0.00 3.46
426 429 1.518325 AACATTCACATCACGGCGAA 58.482 45.000 16.62 0.42 0.00 4.70
427 430 1.463056 GAAACATTCACATCACGGCGA 59.537 47.619 16.62 0.00 0.00 5.54
428 431 1.786575 CGAAACATTCACATCACGGCG 60.787 52.381 4.80 4.80 0.00 6.46
429 432 1.465689 CCGAAACATTCACATCACGGC 60.466 52.381 0.00 0.00 33.24 5.68
430 433 1.465689 GCCGAAACATTCACATCACGG 60.466 52.381 0.00 0.00 41.63 4.94
431 434 1.464608 AGCCGAAACATTCACATCACG 59.535 47.619 0.00 0.00 0.00 4.35
432 435 4.882671 ATAGCCGAAACATTCACATCAC 57.117 40.909 0.00 0.00 0.00 3.06
433 436 5.065090 CAGAATAGCCGAAACATTCACATCA 59.935 40.000 0.00 0.00 32.27 3.07
434 437 5.294306 TCAGAATAGCCGAAACATTCACATC 59.706 40.000 0.00 0.00 32.27 3.06
435 438 5.185454 TCAGAATAGCCGAAACATTCACAT 58.815 37.500 0.00 0.00 32.27 3.21
436 439 4.574892 TCAGAATAGCCGAAACATTCACA 58.425 39.130 0.00 0.00 32.27 3.58
437 440 5.545658 TTCAGAATAGCCGAAACATTCAC 57.454 39.130 0.00 0.00 32.27 3.18
438 441 6.757897 ATTTCAGAATAGCCGAAACATTCA 57.242 33.333 0.00 0.00 31.87 2.57
439 442 9.736023 AAATATTTCAGAATAGCCGAAACATTC 57.264 29.630 0.00 0.00 27.46 2.67
440 443 9.736023 GAAATATTTCAGAATAGCCGAAACATT 57.264 29.630 20.89 0.00 37.15 2.71
441 444 8.352942 GGAAATATTTCAGAATAGCCGAAACAT 58.647 33.333 25.55 0.00 38.92 2.71
442 445 7.201785 GGGAAATATTTCAGAATAGCCGAAACA 60.202 37.037 25.55 0.00 38.92 2.83
443 446 7.013369 AGGGAAATATTTCAGAATAGCCGAAAC 59.987 37.037 25.55 6.64 38.92 2.78
444 447 7.060421 AGGGAAATATTTCAGAATAGCCGAAA 58.940 34.615 25.55 0.00 38.92 3.46
445 448 6.601332 AGGGAAATATTTCAGAATAGCCGAA 58.399 36.000 25.55 0.00 38.92 4.30
446 449 6.043243 AGAGGGAAATATTTCAGAATAGCCGA 59.957 38.462 25.55 0.00 38.92 5.54
447 450 6.234177 AGAGGGAAATATTTCAGAATAGCCG 58.766 40.000 25.55 0.00 38.92 5.52
448 451 7.227156 TGAGAGGGAAATATTTCAGAATAGCC 58.773 38.462 25.55 16.61 38.92 3.93
449 452 8.860780 ATGAGAGGGAAATATTTCAGAATAGC 57.139 34.615 25.55 9.47 38.92 2.97
452 455 9.352191 CAAGATGAGAGGGAAATATTTCAGAAT 57.648 33.333 25.55 11.47 38.92 2.40
453 456 7.284034 GCAAGATGAGAGGGAAATATTTCAGAA 59.716 37.037 25.55 8.54 38.92 3.02
454 457 6.769822 GCAAGATGAGAGGGAAATATTTCAGA 59.230 38.462 25.55 6.53 38.92 3.27
455 458 6.544931 TGCAAGATGAGAGGGAAATATTTCAG 59.455 38.462 25.55 5.51 38.92 3.02
456 459 6.425735 TGCAAGATGAGAGGGAAATATTTCA 58.574 36.000 25.55 8.81 38.92 2.69
457 460 6.949352 TGCAAGATGAGAGGGAAATATTTC 57.051 37.500 18.22 18.22 36.46 2.17
458 461 7.343833 ACAATGCAAGATGAGAGGGAAATATTT 59.656 33.333 0.00 0.00 0.00 1.40
459 462 6.837568 ACAATGCAAGATGAGAGGGAAATATT 59.162 34.615 0.00 0.00 0.00 1.28
460 463 6.264744 CACAATGCAAGATGAGAGGGAAATAT 59.735 38.462 0.00 0.00 0.00 1.28
461 464 5.591472 CACAATGCAAGATGAGAGGGAAATA 59.409 40.000 0.00 0.00 0.00 1.40
462 465 4.401519 CACAATGCAAGATGAGAGGGAAAT 59.598 41.667 0.00 0.00 0.00 2.17
463 466 3.760151 CACAATGCAAGATGAGAGGGAAA 59.240 43.478 0.00 0.00 0.00 3.13
464 467 3.009363 TCACAATGCAAGATGAGAGGGAA 59.991 43.478 0.00 0.00 0.00 3.97
465 468 2.573009 TCACAATGCAAGATGAGAGGGA 59.427 45.455 0.00 0.00 0.00 4.20
466 469 2.995283 TCACAATGCAAGATGAGAGGG 58.005 47.619 0.00 0.00 0.00 4.30
467 470 3.945921 ACATCACAATGCAAGATGAGAGG 59.054 43.478 21.16 14.58 41.18 3.69
468 471 5.562506 AACATCACAATGCAAGATGAGAG 57.437 39.130 21.16 11.17 41.18 3.20
469 472 5.970317 AAACATCACAATGCAAGATGAGA 57.030 34.783 21.16 12.25 41.18 3.27
470 473 8.697846 AAATAAACATCACAATGCAAGATGAG 57.302 30.769 21.16 8.18 41.18 2.90
471 474 7.760794 GGAAATAAACATCACAATGCAAGATGA 59.239 33.333 21.16 12.39 41.18 2.92
472 475 7.253850 CGGAAATAAACATCACAATGCAAGATG 60.254 37.037 15.75 15.75 43.56 2.90
473 476 6.753279 CGGAAATAAACATCACAATGCAAGAT 59.247 34.615 0.00 0.00 36.26 2.40
474 477 6.092092 CGGAAATAAACATCACAATGCAAGA 58.908 36.000 0.00 0.00 36.26 3.02
475 478 5.220265 GCGGAAATAAACATCACAATGCAAG 60.220 40.000 0.00 0.00 36.26 4.01
476 479 4.624882 GCGGAAATAAACATCACAATGCAA 59.375 37.500 0.00 0.00 36.26 4.08
477 480 4.082300 AGCGGAAATAAACATCACAATGCA 60.082 37.500 0.00 0.00 36.26 3.96
478 481 4.423732 AGCGGAAATAAACATCACAATGC 58.576 39.130 0.00 0.00 36.26 3.56
479 482 8.131100 AGATTAGCGGAAATAAACATCACAATG 58.869 33.333 0.00 0.00 38.93 2.82
480 483 8.131100 CAGATTAGCGGAAATAAACATCACAAT 58.869 33.333 0.00 0.00 0.00 2.71
481 484 7.335673 TCAGATTAGCGGAAATAAACATCACAA 59.664 33.333 0.00 0.00 0.00 3.33
482 485 6.821160 TCAGATTAGCGGAAATAAACATCACA 59.179 34.615 0.00 0.00 0.00 3.58
483 486 7.246674 TCAGATTAGCGGAAATAAACATCAC 57.753 36.000 0.00 0.00 0.00 3.06
484 487 7.857734 TTCAGATTAGCGGAAATAAACATCA 57.142 32.000 0.00 0.00 0.00 3.07
494 497 9.832445 AGAGTAAAATATTTCAGATTAGCGGAA 57.168 29.630 0.10 0.00 0.00 4.30
495 498 9.261180 CAGAGTAAAATATTTCAGATTAGCGGA 57.739 33.333 0.10 0.00 0.00 5.54
496 499 9.261180 TCAGAGTAAAATATTTCAGATTAGCGG 57.739 33.333 0.10 0.00 0.00 5.52
503 506 9.671279 TGCAAGATCAGAGTAAAATATTTCAGA 57.329 29.630 0.10 0.00 0.00 3.27
511 514 9.624373 ACATCTTATGCAAGATCAGAGTAAAAT 57.376 29.630 0.00 0.00 46.50 1.82
512 515 9.453572 AACATCTTATGCAAGATCAGAGTAAAA 57.546 29.630 0.00 0.00 46.50 1.52
513 516 9.102757 GAACATCTTATGCAAGATCAGAGTAAA 57.897 33.333 0.00 0.00 46.50 2.01
514 517 7.436376 CGAACATCTTATGCAAGATCAGAGTAA 59.564 37.037 0.00 0.00 46.50 2.24
515 518 6.920210 CGAACATCTTATGCAAGATCAGAGTA 59.080 38.462 0.00 0.00 46.50 2.59
516 519 5.752472 CGAACATCTTATGCAAGATCAGAGT 59.248 40.000 0.00 0.00 46.50 3.24
517 520 5.981915 TCGAACATCTTATGCAAGATCAGAG 59.018 40.000 0.00 0.00 46.50 3.35
518 521 5.906073 TCGAACATCTTATGCAAGATCAGA 58.094 37.500 0.00 0.00 46.50 3.27
519 522 5.177142 CCTCGAACATCTTATGCAAGATCAG 59.823 44.000 0.00 0.00 46.50 2.90
520 523 5.052481 CCTCGAACATCTTATGCAAGATCA 58.948 41.667 0.00 0.00 46.50 2.92
521 524 5.053145 ACCTCGAACATCTTATGCAAGATC 58.947 41.667 0.00 0.00 46.50 2.75
523 526 4.081697 TGACCTCGAACATCTTATGCAAGA 60.082 41.667 0.00 0.00 44.77 3.02
524 527 4.183865 TGACCTCGAACATCTTATGCAAG 58.816 43.478 0.00 0.00 0.00 4.01
525 528 4.183865 CTGACCTCGAACATCTTATGCAA 58.816 43.478 0.00 0.00 0.00 4.08
526 529 3.430790 CCTGACCTCGAACATCTTATGCA 60.431 47.826 0.00 0.00 0.00 3.96
527 530 3.126831 CCTGACCTCGAACATCTTATGC 58.873 50.000 0.00 0.00 0.00 3.14
528 531 4.392921 ACCTGACCTCGAACATCTTATG 57.607 45.455 0.00 0.00 0.00 1.90
529 532 4.223032 ACAACCTGACCTCGAACATCTTAT 59.777 41.667 0.00 0.00 0.00 1.73
530 533 3.576982 ACAACCTGACCTCGAACATCTTA 59.423 43.478 0.00 0.00 0.00 2.10
531 534 2.368875 ACAACCTGACCTCGAACATCTT 59.631 45.455 0.00 0.00 0.00 2.40
532 535 1.971357 ACAACCTGACCTCGAACATCT 59.029 47.619 0.00 0.00 0.00 2.90
533 536 2.457366 ACAACCTGACCTCGAACATC 57.543 50.000 0.00 0.00 0.00 3.06
534 537 2.158813 ACAACAACCTGACCTCGAACAT 60.159 45.455 0.00 0.00 0.00 2.71
535 538 1.208535 ACAACAACCTGACCTCGAACA 59.791 47.619 0.00 0.00 0.00 3.18
536 539 1.949465 ACAACAACCTGACCTCGAAC 58.051 50.000 0.00 0.00 0.00 3.95
537 540 3.493699 CCTTACAACAACCTGACCTCGAA 60.494 47.826 0.00 0.00 0.00 3.71
538 541 2.036733 CCTTACAACAACCTGACCTCGA 59.963 50.000 0.00 0.00 0.00 4.04
539 542 2.036733 TCCTTACAACAACCTGACCTCG 59.963 50.000 0.00 0.00 0.00 4.63
540 543 3.764237 TCCTTACAACAACCTGACCTC 57.236 47.619 0.00 0.00 0.00 3.85
541 544 5.487488 TCATATCCTTACAACAACCTGACCT 59.513 40.000 0.00 0.00 0.00 3.85
542 545 5.741011 TCATATCCTTACAACAACCTGACC 58.259 41.667 0.00 0.00 0.00 4.02
543 546 6.313905 CACTCATATCCTTACAACAACCTGAC 59.686 42.308 0.00 0.00 0.00 3.51
544 547 6.406370 CACTCATATCCTTACAACAACCTGA 58.594 40.000 0.00 0.00 0.00 3.86
545 548 5.586243 CCACTCATATCCTTACAACAACCTG 59.414 44.000 0.00 0.00 0.00 4.00
546 549 5.339200 CCCACTCATATCCTTACAACAACCT 60.339 44.000 0.00 0.00 0.00 3.50
547 550 4.881850 CCCACTCATATCCTTACAACAACC 59.118 45.833 0.00 0.00 0.00 3.77
548 551 5.497474 ACCCACTCATATCCTTACAACAAC 58.503 41.667 0.00 0.00 0.00 3.32
549 552 5.338871 GGACCCACTCATATCCTTACAACAA 60.339 44.000 0.00 0.00 0.00 2.83
550 553 4.163458 GGACCCACTCATATCCTTACAACA 59.837 45.833 0.00 0.00 0.00 3.33
551 554 4.163458 TGGACCCACTCATATCCTTACAAC 59.837 45.833 0.00 0.00 32.06 3.32
552 555 4.367166 TGGACCCACTCATATCCTTACAA 58.633 43.478 0.00 0.00 32.06 2.41
553 556 4.002256 TGGACCCACTCATATCCTTACA 57.998 45.455 0.00 0.00 32.06 2.41
554 557 4.263068 CCATGGACCCACTCATATCCTTAC 60.263 50.000 5.56 0.00 32.06 2.34
555 558 3.909995 CCATGGACCCACTCATATCCTTA 59.090 47.826 5.56 0.00 32.06 2.69
556 559 2.713167 CCATGGACCCACTCATATCCTT 59.287 50.000 5.56 0.00 32.06 3.36
557 560 2.089982 TCCATGGACCCACTCATATCCT 60.090 50.000 11.44 0.00 32.06 3.24
558 561 2.304180 CTCCATGGACCCACTCATATCC 59.696 54.545 11.44 0.00 0.00 2.59
559 562 2.304180 CCTCCATGGACCCACTCATATC 59.696 54.545 11.44 0.00 38.35 1.63
560 563 2.342659 CCTCCATGGACCCACTCATAT 58.657 52.381 11.44 0.00 38.35 1.78
561 564 1.695664 CCCTCCATGGACCCACTCATA 60.696 57.143 11.44 0.00 38.35 2.15
562 565 0.990282 CCCTCCATGGACCCACTCAT 60.990 60.000 11.44 0.00 38.35 2.90
563 566 1.616327 CCCTCCATGGACCCACTCA 60.616 63.158 11.44 0.00 38.35 3.41
564 567 1.616628 ACCCTCCATGGACCCACTC 60.617 63.158 11.44 0.00 38.35 3.51
565 568 1.616628 GACCCTCCATGGACCCACT 60.617 63.158 11.44 0.00 38.35 4.00
566 569 2.680370 GGACCCTCCATGGACCCAC 61.680 68.421 11.44 3.08 36.28 4.61
567 570 2.286121 GGACCCTCCATGGACCCA 60.286 66.667 11.44 0.00 36.28 4.51
568 571 1.214992 AAAGGACCCTCCATGGACCC 61.215 60.000 11.44 9.78 39.61 4.46
569 572 0.704664 AAAAGGACCCTCCATGGACC 59.295 55.000 11.44 10.89 39.61 4.46
570 573 2.171003 CAAAAAGGACCCTCCATGGAC 58.829 52.381 11.44 0.07 39.61 4.02
571 574 1.786441 ACAAAAAGGACCCTCCATGGA 59.214 47.619 15.27 15.27 39.61 3.41
572 575 1.895131 CACAAAAAGGACCCTCCATGG 59.105 52.381 4.97 4.97 39.61 3.66
573 576 1.895131 CCACAAAAAGGACCCTCCATG 59.105 52.381 0.00 0.00 39.61 3.66
574 577 1.203174 CCCACAAAAAGGACCCTCCAT 60.203 52.381 0.00 0.00 39.61 3.41
575 578 0.187361 CCCACAAAAAGGACCCTCCA 59.813 55.000 0.00 0.00 39.61 3.86
576 579 1.185618 GCCCACAAAAAGGACCCTCC 61.186 60.000 0.00 0.00 36.58 4.30
577 580 0.469144 TGCCCACAAAAAGGACCCTC 60.469 55.000 0.00 0.00 0.00 4.30
578 581 0.469892 CTGCCCACAAAAAGGACCCT 60.470 55.000 0.00 0.00 0.00 4.34
579 582 0.759060 ACTGCCCACAAAAAGGACCC 60.759 55.000 0.00 0.00 0.00 4.46
580 583 1.119684 AACTGCCCACAAAAAGGACC 58.880 50.000 0.00 0.00 0.00 4.46
581 584 3.860754 GCATAACTGCCCACAAAAAGGAC 60.861 47.826 0.00 0.00 42.88 3.85
582 585 2.298729 GCATAACTGCCCACAAAAAGGA 59.701 45.455 0.00 0.00 42.88 3.36
583 586 2.687370 GCATAACTGCCCACAAAAAGG 58.313 47.619 0.00 0.00 42.88 3.11
599 602 9.605275 GCATTATTCAGATGATACCTTAGCATA 57.395 33.333 0.00 0.00 34.49 3.14
600 603 8.327271 AGCATTATTCAGATGATACCTTAGCAT 58.673 33.333 0.00 0.00 37.53 3.79
601 604 7.683578 AGCATTATTCAGATGATACCTTAGCA 58.316 34.615 0.00 0.00 0.00 3.49
602 605 8.558973 AAGCATTATTCAGATGATACCTTAGC 57.441 34.615 0.00 0.00 0.00 3.09
656 660 2.676076 GCATCGTCCAAATGCAAAGTT 58.324 42.857 0.00 0.00 46.93 2.66
657 661 2.352503 GCATCGTCCAAATGCAAAGT 57.647 45.000 0.00 0.00 46.93 2.66
666 670 2.080693 GTGGTTGTATGCATCGTCCAA 58.919 47.619 0.19 0.00 0.00 3.53
744 748 2.840038 ACAGATGTTGCCTAGATGGTGA 59.160 45.455 0.00 0.00 38.35 4.02
779 783 1.303561 GGCACCACTGCATCAAGGA 60.304 57.895 0.00 0.00 46.28 3.36
810 814 4.393680 GGTGCGATGTCTGTTTGGTATTAA 59.606 41.667 0.00 0.00 0.00 1.40
853 857 1.510492 TGGCTAGGATGGAGCATTCA 58.490 50.000 0.00 0.00 41.98 2.57
855 859 4.164988 GGTATATGGCTAGGATGGAGCATT 59.835 45.833 0.00 0.00 41.98 3.56
860 864 2.625883 CCCGGTATATGGCTAGGATGGA 60.626 54.545 0.00 0.00 0.00 3.41
873 877 0.694783 TGTGGCCCAATCCCGGTATA 60.695 55.000 0.00 0.00 0.00 1.47
991 995 0.613292 TTTGGCGCCATGGTGGTATT 60.613 50.000 33.25 0.00 40.46 1.89
994 998 3.302344 GTTTGGCGCCATGGTGGT 61.302 61.111 33.25 0.00 40.46 4.16
1009 1013 2.743718 CAGGGTGGTCGAGCTGTT 59.256 61.111 16.64 0.00 0.00 3.16
1255 1594 3.834231 CCAAAATTCAGTCTGGATTGGGT 59.166 43.478 7.15 0.00 33.80 4.51
1652 1992 3.494254 TTGGCCTGACCGGTGGTT 61.494 61.111 14.63 0.00 43.94 3.67
1718 2058 3.458163 GGTCTCCCATCGGCGTCA 61.458 66.667 6.85 0.00 0.00 4.35
1766 2106 1.515954 GATCCAGAGGAACGCCGAA 59.484 57.895 0.00 0.00 39.96 4.30
1890 2234 0.179029 CTCGAGTCTCCTCCTCCTCC 60.179 65.000 3.62 0.00 33.93 4.30
1977 2321 3.710326 AAGAAAAACAGACCGGAAAGC 57.290 42.857 9.46 0.00 0.00 3.51
1978 2322 7.704899 ACAAATTAAGAAAAACAGACCGGAAAG 59.295 33.333 9.46 0.00 0.00 2.62
1979 2323 7.489757 CACAAATTAAGAAAAACAGACCGGAAA 59.510 33.333 9.46 0.00 0.00 3.13
1980 2324 6.975772 CACAAATTAAGAAAAACAGACCGGAA 59.024 34.615 9.46 0.00 0.00 4.30
1981 2325 6.095720 ACACAAATTAAGAAAAACAGACCGGA 59.904 34.615 9.46 0.00 0.00 5.14
1982 2326 6.270064 ACACAAATTAAGAAAAACAGACCGG 58.730 36.000 0.00 0.00 0.00 5.28
1983 2327 7.112984 GCTACACAAATTAAGAAAAACAGACCG 59.887 37.037 0.00 0.00 0.00 4.79
1984 2328 8.135529 AGCTACACAAATTAAGAAAAACAGACC 58.864 33.333 0.00 0.00 0.00 3.85
2025 2372 1.000955 AGCAGGAATCGAACACGACTT 59.999 47.619 0.00 0.00 38.85 3.01
2053 2400 8.826710 TGTCTACACTCAACATTACTTTGAAAG 58.173 33.333 2.89 2.89 32.61 2.62
2058 2405 8.500753 TTTGTGTCTACACTCAACATTACTTT 57.499 30.769 13.95 0.00 46.55 2.66
2100 2447 4.696479 AGTAGAGGGCATAACAATCCAG 57.304 45.455 0.00 0.00 0.00 3.86
2130 2477 3.762407 TGGTACTTTACAGAGCAGCAA 57.238 42.857 0.00 0.00 0.00 3.91
2144 2491 1.291033 TCTACTCCCAGGCATGGTACT 59.709 52.381 17.55 0.00 46.10 2.73
2145 2492 1.413077 GTCTACTCCCAGGCATGGTAC 59.587 57.143 17.55 0.87 46.10 3.34
2147 2494 0.043334 AGTCTACTCCCAGGCATGGT 59.957 55.000 17.55 0.00 46.10 3.55
2149 2496 1.411977 CTCAGTCTACTCCCAGGCATG 59.588 57.143 0.00 0.00 0.00 4.06
2150 2497 1.690845 CCTCAGTCTACTCCCAGGCAT 60.691 57.143 0.00 0.00 0.00 4.40
2151 2498 0.324738 CCTCAGTCTACTCCCAGGCA 60.325 60.000 0.00 0.00 0.00 4.75
2152 2499 0.324830 ACCTCAGTCTACTCCCAGGC 60.325 60.000 0.00 0.00 0.00 4.85
2153 2500 2.239681 AACCTCAGTCTACTCCCAGG 57.760 55.000 0.00 0.00 0.00 4.45
2154 2501 4.773149 ACTTTAACCTCAGTCTACTCCCAG 59.227 45.833 0.00 0.00 0.00 4.45
2155 2502 4.748701 ACTTTAACCTCAGTCTACTCCCA 58.251 43.478 0.00 0.00 0.00 4.37
2156 2503 5.126869 GGTACTTTAACCTCAGTCTACTCCC 59.873 48.000 0.00 0.00 36.53 4.30
2157 2504 5.713861 TGGTACTTTAACCTCAGTCTACTCC 59.286 44.000 0.00 0.00 40.44 3.85
2161 2508 5.105064 GGCATGGTACTTTAACCTCAGTCTA 60.105 44.000 0.00 0.00 40.44 2.59
2252 2602 5.964958 TGAAAGGAAAGACTGCCAAATAG 57.035 39.130 0.00 0.00 0.00 1.73
2321 2671 8.621286 CGACCTAGAACTAATTTGGCAAATAAT 58.379 33.333 24.58 13.36 0.00 1.28
2322 2672 7.414762 GCGACCTAGAACTAATTTGGCAAATAA 60.415 37.037 24.58 0.00 0.00 1.40
2323 2673 6.037830 GCGACCTAGAACTAATTTGGCAAATA 59.962 38.462 24.58 12.46 0.00 1.40
2324 2674 5.163652 GCGACCTAGAACTAATTTGGCAAAT 60.164 40.000 19.39 19.39 0.00 2.32
2325 2675 4.155280 GCGACCTAGAACTAATTTGGCAAA 59.845 41.667 16.01 16.01 0.00 3.68
2326 2676 3.687698 GCGACCTAGAACTAATTTGGCAA 59.312 43.478 0.00 0.00 0.00 4.52
2327 2677 3.267483 GCGACCTAGAACTAATTTGGCA 58.733 45.455 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.