Multiple sequence alignment - TraesCS1A01G049000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G049000 chr1A 100.000 2769 0 0 1 2769 30639300 30636532 0.000000e+00 5114.0
1 TraesCS1A01G049000 chr1A 88.073 218 22 3 1751 1968 30336411 30336198 3.540000e-64 255.0
2 TraesCS1A01G049000 chr1A 82.692 104 14 4 1598 1699 30557226 30557125 3.800000e-14 89.8
3 TraesCS1A01G049000 chr1B 91.421 1084 57 13 1383 2465 49843460 49842412 0.000000e+00 1454.0
4 TraesCS1A01G049000 chr1B 93.452 504 20 7 855 1357 49843908 49843417 0.000000e+00 736.0
5 TraesCS1A01G049000 chr1B 90.685 365 22 6 1003 1367 49689986 49689634 2.500000e-130 475.0
6 TraesCS1A01G049000 chr1B 90.062 322 32 0 1930 2251 49689105 49688784 4.270000e-113 418.0
7 TraesCS1A01G049000 chr1B 79.520 542 79 25 1587 2113 49563477 49562953 9.430000e-95 357.0
8 TraesCS1A01G049000 chr1B 91.416 233 13 3 1451 1677 49689639 49689408 2.070000e-81 313.0
9 TraesCS1A01G049000 chr1B 90.811 185 16 1 2585 2769 49688785 49688602 2.130000e-61 246.0
10 TraesCS1A01G049000 chr1D 86.245 807 53 17 1383 2174 31323040 31322277 0.000000e+00 822.0
11 TraesCS1A01G049000 chr1D 84.125 800 66 29 1390 2174 31334462 31333709 0.000000e+00 717.0
12 TraesCS1A01G049000 chr1D 94.218 467 22 4 375 841 376863260 376863721 0.000000e+00 708.0
13 TraesCS1A01G049000 chr1D 87.080 565 65 7 2186 2749 31333727 31333170 1.400000e-177 632.0
14 TraesCS1A01G049000 chr1D 85.606 528 58 9 1849 2365 31328783 31328263 3.140000e-149 538.0
15 TraesCS1A01G049000 chr1D 78.034 824 132 25 1399 2200 30509647 30508851 8.980000e-130 473.0
16 TraesCS1A01G049000 chr1D 87.027 370 34 8 1009 1377 31323334 31322978 3.320000e-109 405.0
17 TraesCS1A01G049000 chr1D 85.139 397 42 7 899 1289 31329596 31329211 9.300000e-105 390.0
18 TraesCS1A01G049000 chr1D 77.562 722 106 23 1512 2203 31064184 31063489 4.330000e-103 385.0
19 TraesCS1A01G049000 chr1D 86.707 331 27 6 1430 1743 31329136 31328806 4.390000e-93 351.0
20 TraesCS1A01G049000 chr1D 77.090 646 105 22 1391 2019 30575519 30574900 1.590000e-87 333.0
21 TraesCS1A01G049000 chr1D 92.544 228 17 0 1025 1252 31334686 31334459 7.390000e-86 327.0
22 TraesCS1A01G049000 chr1D 95.477 199 8 1 2571 2768 31327547 31327349 1.600000e-82 316.0
23 TraesCS1A01G049000 chr1D 86.010 193 20 2 1791 1980 30382298 30382110 1.680000e-47 200.0
24 TraesCS1A01G049000 chr1D 80.162 247 34 7 1475 1715 30382541 30382304 1.320000e-38 171.0
25 TraesCS1A01G049000 chr3D 93.590 468 28 2 373 840 420484420 420483955 0.000000e+00 697.0
26 TraesCS1A01G049000 chr3D 82.063 223 31 7 142 357 100502665 100502445 6.090000e-42 182.0
27 TraesCS1A01G049000 chr3A 93.148 467 30 1 375 841 704647069 704647533 0.000000e+00 684.0
28 TraesCS1A01G049000 chr3A 92.258 465 36 0 375 839 219342939 219342475 0.000000e+00 660.0
29 TraesCS1A01G049000 chr5D 92.781 471 29 3 373 839 430533800 430534269 0.000000e+00 676.0
30 TraesCS1A01G049000 chr6B 92.457 464 34 1 375 838 560702988 560702526 0.000000e+00 662.0
31 TraesCS1A01G049000 chr5B 92.291 467 32 4 374 839 61558978 61558515 0.000000e+00 660.0
32 TraesCS1A01G049000 chr4A 92.424 462 35 0 375 836 403171754 403172215 0.000000e+00 660.0
33 TraesCS1A01G049000 chr4A 79.149 235 43 5 134 363 22749399 22749166 1.030000e-34 158.0
34 TraesCS1A01G049000 chr2B 92.424 462 35 0 375 836 702727993 702728454 0.000000e+00 660.0
35 TraesCS1A01G049000 chr2B 82.731 249 36 5 121 364 143270337 143270091 6.010000e-52 215.0
36 TraesCS1A01G049000 chr4B 87.766 188 21 2 142 328 525268176 525268362 4.640000e-53 219.0
37 TraesCS1A01G049000 chr3B 84.348 230 28 7 140 364 665987461 665987687 4.640000e-53 219.0
38 TraesCS1A01G049000 chr3B 79.913 229 39 6 142 364 443362609 443362836 7.940000e-36 161.0
39 TraesCS1A01G049000 chr7B 85.572 201 28 1 142 341 431680246 431680446 2.790000e-50 209.0
40 TraesCS1A01G049000 chr7D 83.556 225 34 3 119 341 593265200 593264977 1.010000e-49 207.0
41 TraesCS1A01G049000 chr6A 80.263 228 40 4 142 364 232331654 232331881 1.710000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G049000 chr1A 30636532 30639300 2768 True 5114.000000 5114 100.000000 1 2769 1 chr1A.!!$R3 2768
1 TraesCS1A01G049000 chr1B 49842412 49843908 1496 True 1095.000000 1454 92.436500 855 2465 2 chr1B.!!$R3 1610
2 TraesCS1A01G049000 chr1B 49688602 49689986 1384 True 363.000000 475 90.743500 1003 2769 4 chr1B.!!$R2 1766
3 TraesCS1A01G049000 chr1B 49562953 49563477 524 True 357.000000 357 79.520000 1587 2113 1 chr1B.!!$R1 526
4 TraesCS1A01G049000 chr1D 31322277 31323334 1057 True 613.500000 822 86.636000 1009 2174 2 chr1D.!!$R5 1165
5 TraesCS1A01G049000 chr1D 30508851 30509647 796 True 473.000000 473 78.034000 1399 2200 1 chr1D.!!$R1 801
6 TraesCS1A01G049000 chr1D 31327349 31334686 7337 True 467.285714 717 88.096857 899 2768 7 chr1D.!!$R6 1869
7 TraesCS1A01G049000 chr1D 31063489 31064184 695 True 385.000000 385 77.562000 1512 2203 1 chr1D.!!$R3 691
8 TraesCS1A01G049000 chr1D 30574900 30575519 619 True 333.000000 333 77.090000 1391 2019 1 chr1D.!!$R2 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.036010 CGCTGACCCATCTCAAAGGT 60.036 55.0 0.00 0.00 36.31 3.50 F
553 554 0.038067 GGCACGGCCCGTTTATTTTT 60.038 50.0 5.76 0.00 44.06 1.94 F
659 660 0.175531 TATGCAGCTCAGCGTGCTAA 59.824 50.0 18.19 7.07 40.54 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 1376 0.036306 GGGAGTTCTTTTGGAGCCGA 59.964 55.0 0.0 0.0 0.00 5.54 R
1376 1377 0.036875 AGGGAGTTCTTTTGGAGCCG 59.963 55.0 0.0 0.0 0.00 5.52 R
2478 7953 0.535797 GGAAACTAGGGGTCCTCACG 59.464 60.0 0.0 0.0 34.61 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.759497 ACTTTTGATGTGCTTTATACTCCC 57.241 37.500 0.00 0.00 0.00 4.30
24 25 6.485171 ACTTTTGATGTGCTTTATACTCCCT 58.515 36.000 0.00 0.00 0.00 4.20
25 26 6.948309 ACTTTTGATGTGCTTTATACTCCCTT 59.052 34.615 0.00 0.00 0.00 3.95
26 27 8.107095 ACTTTTGATGTGCTTTATACTCCCTTA 58.893 33.333 0.00 0.00 0.00 2.69
27 28 8.871629 TTTTGATGTGCTTTATACTCCCTTAA 57.128 30.769 0.00 0.00 0.00 1.85
28 29 9.474313 TTTTGATGTGCTTTATACTCCCTTAAT 57.526 29.630 0.00 0.00 0.00 1.40
30 31 9.778741 TTGATGTGCTTTATACTCCCTTAATAG 57.221 33.333 0.00 0.00 0.00 1.73
31 32 8.934697 TGATGTGCTTTATACTCCCTTAATAGT 58.065 33.333 0.00 0.00 0.00 2.12
32 33 9.780186 GATGTGCTTTATACTCCCTTAATAGTT 57.220 33.333 0.00 0.00 0.00 2.24
33 34 8.958119 TGTGCTTTATACTCCCTTAATAGTTG 57.042 34.615 0.00 0.00 0.00 3.16
34 35 8.764558 TGTGCTTTATACTCCCTTAATAGTTGA 58.235 33.333 0.00 0.00 0.00 3.18
35 36 9.780186 GTGCTTTATACTCCCTTAATAGTTGAT 57.220 33.333 0.00 0.00 0.00 2.57
36 37 9.778741 TGCTTTATACTCCCTTAATAGTTGATG 57.221 33.333 0.00 0.00 0.00 3.07
37 38 9.998106 GCTTTATACTCCCTTAATAGTTGATGA 57.002 33.333 0.00 0.00 0.00 2.92
94 95 5.627499 AAAATCTTAAGATGTTGCGCTGA 57.373 34.783 18.35 0.00 31.10 4.26
95 96 4.606457 AATCTTAAGATGTTGCGCTGAC 57.394 40.909 18.61 8.34 34.49 3.51
96 97 2.346803 TCTTAAGATGTTGCGCTGACC 58.653 47.619 9.73 0.00 0.00 4.02
97 98 1.398390 CTTAAGATGTTGCGCTGACCC 59.602 52.381 9.73 2.71 0.00 4.46
98 99 0.323302 TAAGATGTTGCGCTGACCCA 59.677 50.000 9.73 0.00 0.00 4.51
99 100 0.322816 AAGATGTTGCGCTGACCCAT 60.323 50.000 9.73 3.17 0.00 4.00
100 101 0.745845 AGATGTTGCGCTGACCCATC 60.746 55.000 9.73 12.30 33.71 3.51
101 102 0.745845 GATGTTGCGCTGACCCATCT 60.746 55.000 9.73 0.00 31.44 2.90
102 103 0.745845 ATGTTGCGCTGACCCATCTC 60.746 55.000 9.73 0.00 0.00 2.75
103 104 1.375908 GTTGCGCTGACCCATCTCA 60.376 57.895 9.73 0.00 0.00 3.27
104 105 0.955428 GTTGCGCTGACCCATCTCAA 60.955 55.000 9.73 0.00 0.00 3.02
105 106 0.250684 TTGCGCTGACCCATCTCAAA 60.251 50.000 9.73 0.00 0.00 2.69
106 107 0.674581 TGCGCTGACCCATCTCAAAG 60.675 55.000 9.73 0.00 0.00 2.77
107 108 1.372087 GCGCTGACCCATCTCAAAGG 61.372 60.000 0.00 0.00 0.00 3.11
108 109 0.036010 CGCTGACCCATCTCAAAGGT 60.036 55.000 0.00 0.00 36.31 3.50
109 110 1.457346 GCTGACCCATCTCAAAGGTG 58.543 55.000 0.00 0.00 32.81 4.00
110 111 1.457346 CTGACCCATCTCAAAGGTGC 58.543 55.000 0.00 0.00 32.81 5.01
111 112 1.004044 CTGACCCATCTCAAAGGTGCT 59.996 52.381 0.00 0.00 32.81 4.40
112 113 1.425066 TGACCCATCTCAAAGGTGCTT 59.575 47.619 0.00 0.00 32.81 3.91
113 114 2.642311 TGACCCATCTCAAAGGTGCTTA 59.358 45.455 0.00 0.00 32.81 3.09
114 115 3.266772 TGACCCATCTCAAAGGTGCTTAT 59.733 43.478 0.00 0.00 32.81 1.73
115 116 4.473196 TGACCCATCTCAAAGGTGCTTATA 59.527 41.667 0.00 0.00 32.81 0.98
116 117 5.041191 ACCCATCTCAAAGGTGCTTATAG 57.959 43.478 0.00 0.00 30.97 1.31
117 118 4.721776 ACCCATCTCAAAGGTGCTTATAGA 59.278 41.667 0.00 0.00 30.97 1.98
118 119 5.191722 ACCCATCTCAAAGGTGCTTATAGAA 59.808 40.000 0.00 0.00 30.97 2.10
119 120 6.126361 ACCCATCTCAAAGGTGCTTATAGAAT 60.126 38.462 0.00 0.00 30.97 2.40
120 121 7.072454 ACCCATCTCAAAGGTGCTTATAGAATA 59.928 37.037 0.00 0.00 30.97 1.75
121 122 7.939039 CCCATCTCAAAGGTGCTTATAGAATAA 59.061 37.037 0.00 0.00 0.00 1.40
122 123 9.342308 CCATCTCAAAGGTGCTTATAGAATAAA 57.658 33.333 0.00 0.00 0.00 1.40
155 156 7.690952 ATTATCATACTACTCTCTCCGTTCC 57.309 40.000 0.00 0.00 0.00 3.62
156 157 4.498894 TCATACTACTCTCTCCGTTCCA 57.501 45.455 0.00 0.00 0.00 3.53
157 158 4.197750 TCATACTACTCTCTCCGTTCCAC 58.802 47.826 0.00 0.00 0.00 4.02
158 159 2.581216 ACTACTCTCTCCGTTCCACA 57.419 50.000 0.00 0.00 0.00 4.17
159 160 2.872732 ACTACTCTCTCCGTTCCACAA 58.127 47.619 0.00 0.00 0.00 3.33
160 161 3.432378 ACTACTCTCTCCGTTCCACAAT 58.568 45.455 0.00 0.00 0.00 2.71
161 162 2.751166 ACTCTCTCCGTTCCACAATG 57.249 50.000 0.00 0.00 0.00 2.82
162 163 1.971357 ACTCTCTCCGTTCCACAATGT 59.029 47.619 0.00 0.00 0.00 2.71
163 164 3.162666 ACTCTCTCCGTTCCACAATGTA 58.837 45.455 0.00 0.00 0.00 2.29
164 165 3.193691 ACTCTCTCCGTTCCACAATGTAG 59.806 47.826 0.00 0.00 0.00 2.74
165 166 3.162666 TCTCTCCGTTCCACAATGTAGT 58.837 45.455 0.00 0.00 0.00 2.73
166 167 3.056821 TCTCTCCGTTCCACAATGTAGTG 60.057 47.826 0.00 0.00 39.21 2.74
167 168 1.732259 CTCCGTTCCACAATGTAGTGC 59.268 52.381 0.00 0.00 38.18 4.40
168 169 0.442310 CCGTTCCACAATGTAGTGCG 59.558 55.000 0.00 0.00 38.18 5.34
169 170 1.144969 CGTTCCACAATGTAGTGCGT 58.855 50.000 0.00 0.00 38.18 5.24
170 171 1.126113 CGTTCCACAATGTAGTGCGTC 59.874 52.381 0.00 0.00 38.18 5.19
171 172 1.463444 GTTCCACAATGTAGTGCGTCC 59.537 52.381 0.00 0.00 38.18 4.79
172 173 0.682292 TCCACAATGTAGTGCGTCCA 59.318 50.000 0.00 0.00 38.18 4.02
173 174 0.796312 CCACAATGTAGTGCGTCCAC 59.204 55.000 0.00 0.00 42.39 4.02
174 175 1.507562 CACAATGTAGTGCGTCCACA 58.492 50.000 0.00 0.00 44.53 4.17
175 176 2.076100 CACAATGTAGTGCGTCCACAT 58.924 47.619 0.00 0.00 44.53 3.21
176 177 3.258228 CACAATGTAGTGCGTCCACATA 58.742 45.455 0.00 0.00 44.53 2.29
177 178 3.871006 CACAATGTAGTGCGTCCACATAT 59.129 43.478 0.00 0.00 44.53 1.78
178 179 4.025730 CACAATGTAGTGCGTCCACATATC 60.026 45.833 0.00 0.00 44.53 1.63
179 180 2.882927 TGTAGTGCGTCCACATATCC 57.117 50.000 0.00 0.00 44.53 2.59
180 181 1.411246 TGTAGTGCGTCCACATATCCC 59.589 52.381 0.00 0.00 44.53 3.85
181 182 0.671796 TAGTGCGTCCACATATCCCG 59.328 55.000 0.00 0.00 44.53 5.14
182 183 1.040893 AGTGCGTCCACATATCCCGA 61.041 55.000 0.00 0.00 44.53 5.14
183 184 0.597637 GTGCGTCCACATATCCCGAG 60.598 60.000 0.00 0.00 41.67 4.63
184 185 0.753848 TGCGTCCACATATCCCGAGA 60.754 55.000 0.00 0.00 0.00 4.04
185 186 0.603569 GCGTCCACATATCCCGAGAT 59.396 55.000 0.00 0.00 36.44 2.75
186 187 1.000955 GCGTCCACATATCCCGAGATT 59.999 52.381 0.00 0.00 33.67 2.40
187 188 2.548067 GCGTCCACATATCCCGAGATTT 60.548 50.000 0.00 0.00 33.67 2.17
188 189 3.305813 GCGTCCACATATCCCGAGATTTA 60.306 47.826 0.00 0.00 33.67 1.40
189 190 4.798263 GCGTCCACATATCCCGAGATTTAA 60.798 45.833 0.00 0.00 33.67 1.52
190 191 5.294356 CGTCCACATATCCCGAGATTTAAA 58.706 41.667 0.00 0.00 33.67 1.52
191 192 5.932303 CGTCCACATATCCCGAGATTTAAAT 59.068 40.000 0.00 0.00 33.67 1.40
192 193 6.426937 CGTCCACATATCCCGAGATTTAAATT 59.573 38.462 1.43 0.00 33.67 1.82
193 194 7.041372 CGTCCACATATCCCGAGATTTAAATTT 60.041 37.037 1.43 0.00 33.67 1.82
194 195 9.280174 GTCCACATATCCCGAGATTTAAATTTA 57.720 33.333 1.43 0.00 33.67 1.40
195 196 9.854668 TCCACATATCCCGAGATTTAAATTTAA 57.145 29.630 6.54 6.54 33.67 1.52
196 197 9.893305 CCACATATCCCGAGATTTAAATTTAAC 57.107 33.333 10.18 0.69 33.67 2.01
197 198 9.893305 CACATATCCCGAGATTTAAATTTAACC 57.107 33.333 10.18 5.90 33.67 2.85
198 199 8.780249 ACATATCCCGAGATTTAAATTTAACCG 58.220 33.333 10.18 10.84 33.67 4.44
199 200 8.780249 CATATCCCGAGATTTAAATTTAACCGT 58.220 33.333 10.18 0.36 33.67 4.83
201 202 8.735692 ATCCCGAGATTTAAATTTAACCGTAA 57.264 30.769 10.18 0.00 0.00 3.18
202 203 8.558973 TCCCGAGATTTAAATTTAACCGTAAA 57.441 30.769 10.18 0.00 33.76 2.01
203 204 9.176460 TCCCGAGATTTAAATTTAACCGTAAAT 57.824 29.630 10.18 2.41 40.88 1.40
217 218 9.513727 TTTAACCGTAAATTTAACCAACAAGTC 57.486 29.630 0.00 0.00 0.00 3.01
218 219 6.075762 ACCGTAAATTTAACCAACAAGTCC 57.924 37.500 0.00 0.00 0.00 3.85
219 220 5.148568 CCGTAAATTTAACCAACAAGTCCG 58.851 41.667 0.00 0.00 0.00 4.79
220 221 5.049543 CCGTAAATTTAACCAACAAGTCCGA 60.050 40.000 0.00 0.00 0.00 4.55
221 222 6.348704 CCGTAAATTTAACCAACAAGTCCGAT 60.349 38.462 0.00 0.00 0.00 4.18
222 223 7.079475 CGTAAATTTAACCAACAAGTCCGATT 58.921 34.615 0.00 0.00 0.00 3.34
223 224 7.060174 CGTAAATTTAACCAACAAGTCCGATTG 59.940 37.037 0.00 0.00 36.22 2.67
224 225 3.907894 TTAACCAACAAGTCCGATTGC 57.092 42.857 0.00 0.00 33.28 3.56
225 226 0.591170 AACCAACAAGTCCGATTGCG 59.409 50.000 0.00 0.00 33.28 4.85
250 251 6.687081 CGGGAGCAAAAATTATACCACTAA 57.313 37.500 0.00 0.00 0.00 2.24
251 252 7.090953 CGGGAGCAAAAATTATACCACTAAA 57.909 36.000 0.00 0.00 0.00 1.85
252 253 7.712797 CGGGAGCAAAAATTATACCACTAAAT 58.287 34.615 0.00 0.00 0.00 1.40
253 254 8.194769 CGGGAGCAAAAATTATACCACTAAATT 58.805 33.333 0.00 0.00 0.00 1.82
254 255 9.529325 GGGAGCAAAAATTATACCACTAAATTC 57.471 33.333 0.00 0.00 0.00 2.17
296 297 6.644248 AGTGGTATAATTTTTATTCCCGCC 57.356 37.500 0.00 0.00 0.00 6.13
297 298 5.239963 AGTGGTATAATTTTTATTCCCGCCG 59.760 40.000 0.00 0.00 0.00 6.46
298 299 4.023021 TGGTATAATTTTTATTCCCGCCGC 60.023 41.667 0.00 0.00 0.00 6.53
299 300 4.023021 GGTATAATTTTTATTCCCGCCGCA 60.023 41.667 0.00 0.00 0.00 5.69
300 301 2.577449 AATTTTTATTCCCGCCGCAG 57.423 45.000 0.00 0.00 0.00 5.18
301 302 1.470051 ATTTTTATTCCCGCCGCAGT 58.530 45.000 0.00 0.00 0.00 4.40
302 303 1.249407 TTTTTATTCCCGCCGCAGTT 58.751 45.000 0.00 0.00 0.00 3.16
303 304 0.523966 TTTTATTCCCGCCGCAGTTG 59.476 50.000 0.00 0.00 0.00 3.16
304 305 1.309499 TTTATTCCCGCCGCAGTTGG 61.309 55.000 0.00 0.00 0.00 3.77
305 306 2.472414 TTATTCCCGCCGCAGTTGGT 62.472 55.000 0.00 0.00 0.00 3.67
306 307 2.862674 TATTCCCGCCGCAGTTGGTC 62.863 60.000 0.00 0.00 0.00 4.02
311 312 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
312 313 2.251642 GCCGCAGTTGGTCTCGTTT 61.252 57.895 0.00 0.00 0.00 3.60
313 314 1.569493 CCGCAGTTGGTCTCGTTTG 59.431 57.895 0.00 0.00 0.00 2.93
314 315 1.082756 CGCAGTTGGTCTCGTTTGC 60.083 57.895 0.00 0.00 0.00 3.68
315 316 1.498865 CGCAGTTGGTCTCGTTTGCT 61.499 55.000 0.00 0.00 0.00 3.91
316 317 1.508632 GCAGTTGGTCTCGTTTGCTA 58.491 50.000 0.00 0.00 0.00 3.49
317 318 1.871039 GCAGTTGGTCTCGTTTGCTAA 59.129 47.619 0.00 0.00 0.00 3.09
318 319 2.289547 GCAGTTGGTCTCGTTTGCTAAA 59.710 45.455 0.00 0.00 0.00 1.85
319 320 3.058224 GCAGTTGGTCTCGTTTGCTAAAT 60.058 43.478 0.00 0.00 0.00 1.40
320 321 4.153475 GCAGTTGGTCTCGTTTGCTAAATA 59.847 41.667 0.00 0.00 0.00 1.40
321 322 5.163754 GCAGTTGGTCTCGTTTGCTAAATAT 60.164 40.000 0.00 0.00 0.00 1.28
322 323 6.036735 GCAGTTGGTCTCGTTTGCTAAATATA 59.963 38.462 0.00 0.00 0.00 0.86
323 324 7.399523 CAGTTGGTCTCGTTTGCTAAATATAC 58.600 38.462 0.00 0.00 0.00 1.47
324 325 7.064134 CAGTTGGTCTCGTTTGCTAAATATACA 59.936 37.037 0.00 0.00 0.00 2.29
325 326 7.277981 AGTTGGTCTCGTTTGCTAAATATACAG 59.722 37.037 0.00 0.00 0.00 2.74
326 327 6.636705 TGGTCTCGTTTGCTAAATATACAGT 58.363 36.000 0.00 0.00 0.00 3.55
327 328 6.755141 TGGTCTCGTTTGCTAAATATACAGTC 59.245 38.462 0.00 0.00 0.00 3.51
328 329 6.755141 GGTCTCGTTTGCTAAATATACAGTCA 59.245 38.462 0.00 0.00 0.00 3.41
329 330 7.277098 GGTCTCGTTTGCTAAATATACAGTCAA 59.723 37.037 0.00 0.00 0.00 3.18
330 331 8.653338 GTCTCGTTTGCTAAATATACAGTCAAA 58.347 33.333 0.00 0.00 0.00 2.69
331 332 8.869897 TCTCGTTTGCTAAATATACAGTCAAAG 58.130 33.333 0.00 0.00 0.00 2.77
332 333 8.542497 TCGTTTGCTAAATATACAGTCAAAGT 57.458 30.769 0.00 0.00 0.00 2.66
333 334 8.995220 TCGTTTGCTAAATATACAGTCAAAGTT 58.005 29.630 0.00 0.00 0.00 2.66
346 347 7.178712 ACAGTCAAAGTTAGATCTCAAAACG 57.821 36.000 0.00 0.00 0.00 3.60
347 348 6.984474 ACAGTCAAAGTTAGATCTCAAAACGA 59.016 34.615 0.00 0.00 0.00 3.85
348 349 7.494625 ACAGTCAAAGTTAGATCTCAAAACGAA 59.505 33.333 0.00 0.00 0.00 3.85
349 350 7.794349 CAGTCAAAGTTAGATCTCAAAACGAAC 59.206 37.037 0.00 0.00 0.00 3.95
350 351 6.786103 GTCAAAGTTAGATCTCAAAACGAACG 59.214 38.462 0.00 0.00 0.00 3.95
351 352 4.905412 AGTTAGATCTCAAAACGAACGC 57.095 40.909 0.00 0.00 0.00 4.84
352 353 4.304110 AGTTAGATCTCAAAACGAACGCA 58.696 39.130 0.00 0.00 0.00 5.24
353 354 4.150098 AGTTAGATCTCAAAACGAACGCAC 59.850 41.667 0.00 0.00 0.00 5.34
354 355 2.755650 AGATCTCAAAACGAACGCACT 58.244 42.857 0.00 0.00 0.00 4.40
355 356 3.909430 AGATCTCAAAACGAACGCACTA 58.091 40.909 0.00 0.00 0.00 2.74
356 357 3.673809 AGATCTCAAAACGAACGCACTAC 59.326 43.478 0.00 0.00 0.00 2.73
357 358 2.811855 TCTCAAAACGAACGCACTACA 58.188 42.857 0.00 0.00 0.00 2.74
358 359 3.386486 TCTCAAAACGAACGCACTACAT 58.614 40.909 0.00 0.00 0.00 2.29
359 360 3.805422 TCTCAAAACGAACGCACTACATT 59.195 39.130 0.00 0.00 0.00 2.71
360 361 3.867665 TCAAAACGAACGCACTACATTG 58.132 40.909 0.00 0.00 0.00 2.82
361 362 3.310227 TCAAAACGAACGCACTACATTGT 59.690 39.130 0.00 0.00 0.00 2.71
362 363 2.941891 AACGAACGCACTACATTGTG 57.058 45.000 0.00 0.00 40.62 3.33
363 364 1.144969 ACGAACGCACTACATTGTGG 58.855 50.000 0.00 0.00 38.31 4.17
364 365 1.144969 CGAACGCACTACATTGTGGT 58.855 50.000 0.00 0.00 38.31 4.16
365 366 1.529438 CGAACGCACTACATTGTGGTT 59.471 47.619 2.68 0.00 38.31 3.67
366 367 2.661709 CGAACGCACTACATTGTGGTTG 60.662 50.000 2.68 2.30 38.31 3.77
367 368 1.961793 ACGCACTACATTGTGGTTGT 58.038 45.000 2.68 2.91 38.31 3.32
368 369 1.601903 ACGCACTACATTGTGGTTGTG 59.398 47.619 2.68 8.44 44.00 3.33
369 370 1.069296 CGCACTACATTGTGGTTGTGG 60.069 52.381 2.68 0.00 42.29 4.17
370 371 2.226330 GCACTACATTGTGGTTGTGGA 58.774 47.619 2.68 0.00 42.29 4.02
371 372 2.621055 GCACTACATTGTGGTTGTGGAA 59.379 45.455 2.68 0.00 42.29 3.53
372 373 3.255642 GCACTACATTGTGGTTGTGGAAT 59.744 43.478 2.68 0.00 42.29 3.01
373 374 4.797471 CACTACATTGTGGTTGTGGAATG 58.203 43.478 2.68 0.00 39.68 2.67
374 375 4.278170 CACTACATTGTGGTTGTGGAATGT 59.722 41.667 2.68 0.00 39.68 2.71
375 376 5.471797 CACTACATTGTGGTTGTGGAATGTA 59.528 40.000 2.68 0.00 39.68 2.29
376 377 6.150976 CACTACATTGTGGTTGTGGAATGTAT 59.849 38.462 2.68 0.00 39.40 2.29
377 378 7.335673 CACTACATTGTGGTTGTGGAATGTATA 59.664 37.037 2.68 0.00 39.40 1.47
378 379 6.757897 ACATTGTGGTTGTGGAATGTATAG 57.242 37.500 0.00 0.00 37.29 1.31
379 380 5.125417 ACATTGTGGTTGTGGAATGTATAGC 59.875 40.000 0.00 0.00 37.29 2.97
380 381 4.568072 TGTGGTTGTGGAATGTATAGCT 57.432 40.909 0.00 0.00 0.00 3.32
381 382 4.260985 TGTGGTTGTGGAATGTATAGCTG 58.739 43.478 0.00 0.00 0.00 4.24
382 383 3.627577 GTGGTTGTGGAATGTATAGCTGG 59.372 47.826 0.00 0.00 0.00 4.85
383 384 2.618709 GGTTGTGGAATGTATAGCTGGC 59.381 50.000 0.00 0.00 0.00 4.85
384 385 2.618709 GTTGTGGAATGTATAGCTGGCC 59.381 50.000 0.00 0.00 0.00 5.36
385 386 1.843206 TGTGGAATGTATAGCTGGCCA 59.157 47.619 4.71 4.71 0.00 5.36
386 387 2.240921 TGTGGAATGTATAGCTGGCCAA 59.759 45.455 7.01 0.00 0.00 4.52
387 388 3.287222 GTGGAATGTATAGCTGGCCAAA 58.713 45.455 7.01 0.00 0.00 3.28
388 389 3.891366 GTGGAATGTATAGCTGGCCAAAT 59.109 43.478 7.01 3.30 0.00 2.32
389 390 3.890756 TGGAATGTATAGCTGGCCAAATG 59.109 43.478 7.01 0.00 0.00 2.32
390 391 3.891366 GGAATGTATAGCTGGCCAAATGT 59.109 43.478 7.01 0.00 0.00 2.71
391 392 4.261741 GGAATGTATAGCTGGCCAAATGTG 60.262 45.833 7.01 0.00 0.00 3.21
392 393 2.023673 TGTATAGCTGGCCAAATGTGC 58.976 47.619 7.01 6.31 0.00 4.57
400 401 3.309506 CCAAATGTGCCGGGCCAA 61.310 61.111 17.97 4.69 0.00 4.52
401 402 2.739784 CAAATGTGCCGGGCCAAA 59.260 55.556 17.97 1.76 0.00 3.28
402 403 1.667510 CAAATGTGCCGGGCCAAAC 60.668 57.895 17.97 8.89 0.00 2.93
403 404 2.136878 AAATGTGCCGGGCCAAACA 61.137 52.632 17.97 14.83 0.00 2.83
404 405 2.098426 AAATGTGCCGGGCCAAACAG 62.098 55.000 17.97 0.00 0.00 3.16
467 468 3.440415 GGCACGGGCTAAACAGGC 61.440 66.667 10.74 0.00 40.87 4.85
551 552 3.280211 GGCACGGCCCGTTTATTT 58.720 55.556 5.76 0.00 44.06 1.40
552 553 1.587568 GGCACGGCCCGTTTATTTT 59.412 52.632 5.76 0.00 44.06 1.82
553 554 0.038067 GGCACGGCCCGTTTATTTTT 60.038 50.000 5.76 0.00 44.06 1.94
624 625 3.708451 CCCAATAGGCCTAAAAACCAGT 58.292 45.455 18.42 0.00 0.00 4.00
625 626 3.699538 CCCAATAGGCCTAAAAACCAGTC 59.300 47.826 18.42 0.00 0.00 3.51
626 627 3.699538 CCAATAGGCCTAAAAACCAGTCC 59.300 47.826 18.42 0.00 0.00 3.85
627 628 4.340617 CAATAGGCCTAAAAACCAGTCCA 58.659 43.478 18.42 0.00 0.00 4.02
628 629 4.668138 ATAGGCCTAAAAACCAGTCCAA 57.332 40.909 18.42 0.00 0.00 3.53
629 630 3.542969 AGGCCTAAAAACCAGTCCAAT 57.457 42.857 1.29 0.00 0.00 3.16
630 631 4.668138 AGGCCTAAAAACCAGTCCAATA 57.332 40.909 1.29 0.00 0.00 1.90
631 632 4.600062 AGGCCTAAAAACCAGTCCAATAG 58.400 43.478 1.29 0.00 0.00 1.73
632 633 3.699538 GGCCTAAAAACCAGTCCAATAGG 59.300 47.826 0.00 0.00 33.24 2.57
633 634 3.130516 GCCTAAAAACCAGTCCAATAGGC 59.869 47.826 5.28 5.28 44.84 3.93
634 635 4.600062 CCTAAAAACCAGTCCAATAGGCT 58.400 43.478 0.00 0.00 33.74 4.58
635 636 4.399303 CCTAAAAACCAGTCCAATAGGCTG 59.601 45.833 0.00 0.00 38.20 4.85
636 637 3.806949 AAAACCAGTCCAATAGGCTGA 57.193 42.857 0.00 0.00 39.75 4.26
637 638 3.806949 AAACCAGTCCAATAGGCTGAA 57.193 42.857 0.00 0.00 39.75 3.02
638 639 3.806949 AACCAGTCCAATAGGCTGAAA 57.193 42.857 0.00 0.00 39.75 2.69
639 640 3.806949 ACCAGTCCAATAGGCTGAAAA 57.193 42.857 0.00 0.00 39.75 2.29
640 641 4.322057 ACCAGTCCAATAGGCTGAAAAT 57.678 40.909 0.00 0.00 39.75 1.82
641 642 5.450818 ACCAGTCCAATAGGCTGAAAATA 57.549 39.130 0.00 0.00 39.75 1.40
642 643 6.018433 ACCAGTCCAATAGGCTGAAAATAT 57.982 37.500 0.00 0.00 39.75 1.28
643 644 5.829924 ACCAGTCCAATAGGCTGAAAATATG 59.170 40.000 0.00 0.00 39.75 1.78
644 645 5.278660 CCAGTCCAATAGGCTGAAAATATGC 60.279 44.000 0.00 0.00 39.75 3.14
645 646 5.300034 CAGTCCAATAGGCTGAAAATATGCA 59.700 40.000 0.00 0.00 39.75 3.96
646 647 5.533903 AGTCCAATAGGCTGAAAATATGCAG 59.466 40.000 0.00 0.00 35.28 4.41
653 654 2.983166 CTGAAAATATGCAGCTCAGCG 58.017 47.619 0.00 0.00 37.31 5.18
654 655 2.353889 CTGAAAATATGCAGCTCAGCGT 59.646 45.455 0.00 0.00 37.31 5.07
655 656 2.096335 TGAAAATATGCAGCTCAGCGTG 59.904 45.455 1.14 0.00 37.31 5.34
656 657 0.379669 AAATATGCAGCTCAGCGTGC 59.620 50.000 12.60 12.60 40.29 5.34
657 658 0.463295 AATATGCAGCTCAGCGTGCT 60.463 50.000 18.19 9.24 40.54 4.40
658 659 0.390492 ATATGCAGCTCAGCGTGCTA 59.610 50.000 18.19 10.65 40.54 3.49
659 660 0.175531 TATGCAGCTCAGCGTGCTAA 59.824 50.000 18.19 7.07 40.54 3.09
660 661 0.674581 ATGCAGCTCAGCGTGCTAAA 60.675 50.000 18.19 3.29 40.54 1.85
661 662 1.133458 GCAGCTCAGCGTGCTAAAC 59.867 57.895 12.31 0.00 38.92 2.01
670 671 4.312052 GTGCTAAACGGGCCATCA 57.688 55.556 4.39 0.00 0.00 3.07
671 672 2.098293 GTGCTAAACGGGCCATCAG 58.902 57.895 4.39 0.00 0.00 2.90
672 673 1.077787 TGCTAAACGGGCCATCAGG 60.078 57.895 4.39 0.00 38.23 3.86
687 688 4.140354 AGGCCGGCCTGTTTACTA 57.860 55.556 46.71 0.00 46.22 1.82
688 689 2.379288 AGGCCGGCCTGTTTACTAA 58.621 52.632 46.71 0.00 46.22 2.24
689 690 0.916809 AGGCCGGCCTGTTTACTAAT 59.083 50.000 46.71 19.78 46.22 1.73
690 691 1.283905 AGGCCGGCCTGTTTACTAATT 59.716 47.619 46.71 19.17 46.22 1.40
691 692 2.506644 AGGCCGGCCTGTTTACTAATTA 59.493 45.455 46.71 0.00 46.22 1.40
692 693 2.876550 GGCCGGCCTGTTTACTAATTAG 59.123 50.000 38.76 11.05 0.00 1.73
693 694 2.876550 GCCGGCCTGTTTACTAATTAGG 59.123 50.000 18.11 0.61 0.00 2.69
697 698 3.538591 GCCTGTTTACTAATTAGGCCGT 58.461 45.455 16.73 0.00 46.29 5.68
698 699 3.311596 GCCTGTTTACTAATTAGGCCGTG 59.688 47.826 16.73 2.81 46.29 4.94
699 700 3.311596 CCTGTTTACTAATTAGGCCGTGC 59.688 47.826 16.73 2.99 0.00 5.34
749 750 4.856801 CAGCACGGCCCGGCTATT 62.857 66.667 16.89 0.00 38.56 1.73
750 751 3.158648 AGCACGGCCCGGCTATTA 61.159 61.111 15.99 0.00 38.90 0.98
751 752 2.203098 GCACGGCCCGGCTATTAA 60.203 61.111 8.57 0.00 0.00 1.40
752 753 1.820481 GCACGGCCCGGCTATTAAA 60.820 57.895 8.57 0.00 0.00 1.52
753 754 2.019337 CACGGCCCGGCTATTAAAC 58.981 57.895 8.57 0.00 0.00 2.01
754 755 1.522130 ACGGCCCGGCTATTAAACG 60.522 57.895 8.57 4.87 0.00 3.60
755 756 1.522130 CGGCCCGGCTATTAAACGT 60.522 57.895 9.86 0.00 0.00 3.99
756 757 1.768112 CGGCCCGGCTATTAAACGTG 61.768 60.000 9.86 0.00 0.00 4.49
757 758 0.745486 GGCCCGGCTATTAAACGTGT 60.745 55.000 9.86 0.00 0.00 4.49
758 759 0.654160 GCCCGGCTATTAAACGTGTC 59.346 55.000 0.71 0.00 0.00 3.67
759 760 2.008045 GCCCGGCTATTAAACGTGTCA 61.008 52.381 0.71 0.00 0.00 3.58
760 761 1.662122 CCCGGCTATTAAACGTGTCAC 59.338 52.381 0.00 0.00 0.00 3.67
791 792 2.902343 GGGCCAGGCACGATTAGC 60.902 66.667 15.19 0.00 0.00 3.09
792 793 2.124736 GGCCAGGCACGATTAGCA 60.125 61.111 15.19 0.00 0.00 3.49
793 794 2.472909 GGCCAGGCACGATTAGCAC 61.473 63.158 15.19 0.00 0.00 4.40
794 795 1.745115 GCCAGGCACGATTAGCACA 60.745 57.895 6.55 0.00 0.00 4.57
795 796 1.709147 GCCAGGCACGATTAGCACAG 61.709 60.000 6.55 0.00 0.00 3.66
796 797 1.091771 CCAGGCACGATTAGCACAGG 61.092 60.000 0.00 0.00 0.00 4.00
797 798 1.450312 AGGCACGATTAGCACAGGC 60.450 57.895 0.00 0.00 41.61 4.85
838 839 3.918544 CCCGTTTGGCCAGGTATG 58.081 61.111 5.11 0.95 0.00 2.39
849 850 2.645838 CCAGGTATGGTGGAATGGAG 57.354 55.000 0.00 0.00 42.17 3.86
850 851 1.143684 CCAGGTATGGTGGAATGGAGG 59.856 57.143 0.00 0.00 42.17 4.30
851 852 1.143684 CAGGTATGGTGGAATGGAGGG 59.856 57.143 0.00 0.00 0.00 4.30
852 853 1.010793 AGGTATGGTGGAATGGAGGGA 59.989 52.381 0.00 0.00 0.00 4.20
853 854 1.421646 GGTATGGTGGAATGGAGGGAG 59.578 57.143 0.00 0.00 0.00 4.30
861 862 5.163099 TGGTGGAATGGAGGGAGTATATTTG 60.163 44.000 0.00 0.00 0.00 2.32
897 898 2.278854 AGCTACGTAGAGTCGGTCTTC 58.721 52.381 26.53 4.19 36.64 2.87
912 913 3.676324 CGGTCTTCTTTTCATACGGAGCT 60.676 47.826 0.00 0.00 0.00 4.09
956 957 1.376037 CCGAACCAGCTCCCTCAAC 60.376 63.158 0.00 0.00 0.00 3.18
1208 1209 3.251972 CGACTAGGTAACCGATTCTACCC 59.748 52.174 0.00 0.00 38.73 3.69
1222 1223 3.080300 TCTACCCACCGATTGCATTTT 57.920 42.857 0.00 0.00 0.00 1.82
1289 1290 4.219944 AGCTTTGTACTCGTATCTGTTCCA 59.780 41.667 0.00 0.00 0.00 3.53
1291 1292 5.710984 CTTTGTACTCGTATCTGTTCCAGT 58.289 41.667 0.00 0.00 32.61 4.00
1292 1293 4.696899 TGTACTCGTATCTGTTCCAGTG 57.303 45.455 0.00 0.00 32.61 3.66
1293 1294 4.077108 TGTACTCGTATCTGTTCCAGTGT 58.923 43.478 0.00 0.00 32.61 3.55
1294 1295 4.521639 TGTACTCGTATCTGTTCCAGTGTT 59.478 41.667 0.00 0.00 32.61 3.32
1295 1296 4.175787 ACTCGTATCTGTTCCAGTGTTC 57.824 45.455 0.00 0.00 32.61 3.18
1297 1298 3.162666 TCGTATCTGTTCCAGTGTTCCT 58.837 45.455 0.00 0.00 32.61 3.36
1298 1299 3.056821 TCGTATCTGTTCCAGTGTTCCTG 60.057 47.826 0.00 0.00 41.15 3.86
1299 1300 3.306088 CGTATCTGTTCCAGTGTTCCTGT 60.306 47.826 0.00 0.00 39.74 4.00
1301 1302 1.416401 TCTGTTCCAGTGTTCCTGTCC 59.584 52.381 0.00 0.00 39.74 4.02
1321 1322 1.017387 GACCAAACGGATGATGAGGC 58.983 55.000 0.00 0.00 0.00 4.70
1322 1323 0.620556 ACCAAACGGATGATGAGGCT 59.379 50.000 0.00 0.00 0.00 4.58
1323 1324 1.303309 CCAAACGGATGATGAGGCTC 58.697 55.000 7.79 7.79 0.00 4.70
1324 1325 1.303309 CAAACGGATGATGAGGCTCC 58.697 55.000 12.86 0.00 0.00 4.70
1325 1326 0.181350 AAACGGATGATGAGGCTCCC 59.819 55.000 12.86 4.28 0.00 4.30
1326 1327 0.692419 AACGGATGATGAGGCTCCCT 60.692 55.000 12.86 0.00 36.03 4.20
1334 1335 3.627690 GAGGCTCCCTCTGACTGG 58.372 66.667 2.15 0.00 46.41 4.00
1335 1336 1.000993 GAGGCTCCCTCTGACTGGA 59.999 63.158 2.15 0.00 46.41 3.86
1336 1337 0.616111 GAGGCTCCCTCTGACTGGAA 60.616 60.000 2.15 0.00 46.41 3.53
1337 1338 0.617249 AGGCTCCCTCTGACTGGAAG 60.617 60.000 0.00 0.00 42.29 3.46
1362 1363 5.213913 CAGAATGTGGACGAGAAGAATTG 57.786 43.478 0.00 0.00 0.00 2.32
1363 1364 4.931601 CAGAATGTGGACGAGAAGAATTGA 59.068 41.667 0.00 0.00 0.00 2.57
1364 1365 5.063186 CAGAATGTGGACGAGAAGAATTGAG 59.937 44.000 0.00 0.00 0.00 3.02
1365 1366 2.688507 TGTGGACGAGAAGAATTGAGC 58.311 47.619 0.00 0.00 0.00 4.26
1366 1367 2.003301 GTGGACGAGAAGAATTGAGCC 58.997 52.381 0.00 0.00 0.00 4.70
1367 1368 1.902508 TGGACGAGAAGAATTGAGCCT 59.097 47.619 0.00 0.00 0.00 4.58
1368 1369 2.275318 GGACGAGAAGAATTGAGCCTG 58.725 52.381 0.00 0.00 0.00 4.85
1369 1370 2.093973 GGACGAGAAGAATTGAGCCTGA 60.094 50.000 0.00 0.00 0.00 3.86
1370 1371 3.589988 GACGAGAAGAATTGAGCCTGAA 58.410 45.455 0.00 0.00 0.00 3.02
1371 1372 3.594134 ACGAGAAGAATTGAGCCTGAAG 58.406 45.455 0.00 0.00 0.00 3.02
1372 1373 2.351111 CGAGAAGAATTGAGCCTGAAGC 59.649 50.000 0.00 0.00 44.25 3.86
1388 1389 4.379174 GCAGTCGGCTCCAAAAGA 57.621 55.556 0.00 0.00 40.25 2.52
1583 6877 4.318831 GGTTCAAGCAACTTACTGACTTCG 60.319 45.833 0.00 0.00 35.06 3.79
1700 7003 2.478890 GGCAATGCATCTGCTCGCT 61.479 57.895 23.69 0.00 42.66 4.93
1717 7028 0.512952 GCTGCGTGTCACGAGAAATT 59.487 50.000 28.83 0.00 46.05 1.82
1973 7425 1.683917 GTCGCCATCCTGTATGAGACT 59.316 52.381 0.00 0.00 38.69 3.24
1974 7426 2.885266 GTCGCCATCCTGTATGAGACTA 59.115 50.000 0.00 0.00 38.69 2.59
2031 7494 5.428253 GCTGGTTGGTTCTGTTGAGATATA 58.572 41.667 0.00 0.00 0.00 0.86
2160 7629 4.023291 TGACCAAGAAGGCAAAGAAAACT 58.977 39.130 0.00 0.00 43.14 2.66
2217 7692 7.003402 GCATATAATCCCCTGCCAAAATAAA 57.997 36.000 0.00 0.00 0.00 1.40
2218 7693 7.449247 GCATATAATCCCCTGCCAAAATAAAA 58.551 34.615 0.00 0.00 0.00 1.52
2219 7694 8.102676 GCATATAATCCCCTGCCAAAATAAAAT 58.897 33.333 0.00 0.00 0.00 1.82
2248 7723 3.659195 AGGGCATATGATCAAATCTCCCA 59.341 43.478 19.16 0.00 33.79 4.37
2305 7780 5.541868 TGGGAAAAGATAAATTCAGTGGCAA 59.458 36.000 0.00 0.00 0.00 4.52
2306 7781 6.042552 TGGGAAAAGATAAATTCAGTGGCAAA 59.957 34.615 0.00 0.00 0.00 3.68
2307 7782 6.934083 GGGAAAAGATAAATTCAGTGGCAAAA 59.066 34.615 0.00 0.00 0.00 2.44
2308 7783 7.607607 GGGAAAAGATAAATTCAGTGGCAAAAT 59.392 33.333 0.00 0.00 0.00 1.82
2323 7798 8.505625 CAGTGGCAAAATAATTAAGCAACAAAT 58.494 29.630 10.68 0.00 31.63 2.32
2335 7810 5.534207 AAGCAACAAATTGACTGATTCCA 57.466 34.783 0.00 0.00 38.15 3.53
2348 7823 6.950842 TGACTGATTCCATACTCTCAACAAT 58.049 36.000 0.00 0.00 0.00 2.71
2361 7836 9.846248 ATACTCTCAACAATAACAAAAATGAGC 57.154 29.630 0.00 0.00 34.33 4.26
2379 7854 2.423538 GAGCAAATTGGTACTTCGGCAT 59.576 45.455 0.00 0.00 0.00 4.40
2387 7862 6.613755 ATTGGTACTTCGGCATGTATTAAC 57.386 37.500 0.00 0.00 0.00 2.01
2394 7869 5.523916 ACTTCGGCATGTATTAACAAGCTAG 59.476 40.000 5.81 4.43 46.84 3.42
2467 7942 5.254115 AGGCCCTTCTAAGTTCAAACATAC 58.746 41.667 0.00 0.00 0.00 2.39
2472 7947 7.414540 GCCCTTCTAAGTTCAAACATACAGATG 60.415 40.741 0.00 0.00 39.16 2.90
2475 7950 7.905604 TCTAAGTTCAAACATACAGATGTGG 57.094 36.000 0.00 0.00 45.93 4.17
2478 7953 5.003804 AGTTCAAACATACAGATGTGGTCC 58.996 41.667 0.00 0.00 45.93 4.46
2506 7981 7.147373 TGAGGACCCCTAGTTTCCTATTTATTG 60.147 40.741 4.43 0.00 40.02 1.90
2513 7988 8.912988 CCCTAGTTTCCTATTTATTGAAATGCA 58.087 33.333 0.00 0.00 35.96 3.96
2524 7999 2.971660 TGAAATGCATGCTCCAATGG 57.028 45.000 20.33 0.00 0.00 3.16
2536 8011 3.822735 TGCTCCAATGGCATTTAGATAGC 59.177 43.478 18.83 17.40 34.56 2.97
2541 8016 6.782986 TCCAATGGCATTTAGATAGCTGTAT 58.217 36.000 10.65 0.00 0.00 2.29
2549 8024 7.074502 GCATTTAGATAGCTGTATTGTCTTGC 58.925 38.462 0.00 0.00 0.00 4.01
2550 8025 7.041508 GCATTTAGATAGCTGTATTGTCTTGCT 60.042 37.037 0.00 0.00 37.72 3.91
2551 8026 7.776933 TTTAGATAGCTGTATTGTCTTGCTG 57.223 36.000 0.00 0.00 35.47 4.41
2554 8029 5.814705 AGATAGCTGTATTGTCTTGCTGTTC 59.185 40.000 0.00 0.00 35.47 3.18
2555 8030 3.743521 AGCTGTATTGTCTTGCTGTTCA 58.256 40.909 0.00 0.00 32.32 3.18
2569 8044 7.586714 CTTGCTGTTCAAGTTTTCTTTTTCT 57.413 32.000 0.00 0.00 45.48 2.52
2583 8597 6.727824 TTCTTTTTCTTCCAGATTCTAGCG 57.272 37.500 0.00 0.00 0.00 4.26
2593 8607 3.515502 CCAGATTCTAGCGGATCCCATTA 59.484 47.826 6.06 0.00 0.00 1.90
2606 8620 4.499696 GGATCCCATTAATTTGACAAGCCG 60.500 45.833 0.00 0.00 0.00 5.52
2669 8683 1.347050 CTGATGATGGAGCGATTCCCT 59.653 52.381 4.21 0.00 46.19 4.20
2677 8691 2.300152 TGGAGCGATTCCCTGATATCAC 59.700 50.000 0.00 0.00 46.19 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.485171 AGGGAGTATAAAGCACATCAAAAGT 58.515 36.000 0.00 0.00 0.00 2.66
1 2 7.396540 AAGGGAGTATAAAGCACATCAAAAG 57.603 36.000 0.00 0.00 0.00 2.27
2 3 8.871629 TTAAGGGAGTATAAAGCACATCAAAA 57.128 30.769 0.00 0.00 0.00 2.44
4 5 9.778741 CTATTAAGGGAGTATAAAGCACATCAA 57.221 33.333 0.00 0.00 0.00 2.57
7 8 9.561069 CAACTATTAAGGGAGTATAAAGCACAT 57.439 33.333 0.00 0.00 0.00 3.21
8 9 8.764558 TCAACTATTAAGGGAGTATAAAGCACA 58.235 33.333 0.00 0.00 0.00 4.57
9 10 9.780186 ATCAACTATTAAGGGAGTATAAAGCAC 57.220 33.333 0.00 0.00 0.00 4.40
10 11 9.778741 CATCAACTATTAAGGGAGTATAAAGCA 57.221 33.333 0.00 0.00 0.00 3.91
11 12 9.998106 TCATCAACTATTAAGGGAGTATAAAGC 57.002 33.333 0.00 0.00 0.00 3.51
71 72 5.858581 GTCAGCGCAACATCTTAAGATTTTT 59.141 36.000 15.49 8.95 31.21 1.94
72 73 5.393962 GTCAGCGCAACATCTTAAGATTTT 58.606 37.500 15.49 12.75 31.21 1.82
73 74 4.142600 GGTCAGCGCAACATCTTAAGATTT 60.143 41.667 15.49 6.77 31.21 2.17
74 75 3.375299 GGTCAGCGCAACATCTTAAGATT 59.625 43.478 15.49 0.10 31.21 2.40
75 76 2.939103 GGTCAGCGCAACATCTTAAGAT 59.061 45.455 12.37 12.37 34.56 2.40
76 77 2.346803 GGTCAGCGCAACATCTTAAGA 58.653 47.619 11.47 7.82 0.00 2.10
77 78 1.398390 GGGTCAGCGCAACATCTTAAG 59.602 52.381 11.47 0.00 0.00 1.85
78 79 1.271108 TGGGTCAGCGCAACATCTTAA 60.271 47.619 11.47 0.00 34.50 1.85
79 80 0.323302 TGGGTCAGCGCAACATCTTA 59.677 50.000 11.47 0.00 34.50 2.10
80 81 0.322816 ATGGGTCAGCGCAACATCTT 60.323 50.000 11.47 0.00 40.96 2.40
81 82 0.745845 GATGGGTCAGCGCAACATCT 60.746 55.000 11.47 0.00 40.96 2.90
82 83 0.745845 AGATGGGTCAGCGCAACATC 60.746 55.000 11.47 14.94 40.96 3.06
83 84 0.745845 GAGATGGGTCAGCGCAACAT 60.746 55.000 11.47 6.07 40.96 2.71
84 85 1.375908 GAGATGGGTCAGCGCAACA 60.376 57.895 11.47 0.41 40.96 3.33
85 86 0.955428 TTGAGATGGGTCAGCGCAAC 60.955 55.000 11.47 7.37 35.01 4.17
86 87 0.250684 TTTGAGATGGGTCAGCGCAA 60.251 50.000 11.47 0.00 37.72 4.85
87 88 0.674581 CTTTGAGATGGGTCAGCGCA 60.675 55.000 11.47 0.00 41.83 6.09
88 89 1.372087 CCTTTGAGATGGGTCAGCGC 61.372 60.000 0.00 0.00 0.00 5.92
89 90 0.036010 ACCTTTGAGATGGGTCAGCG 60.036 55.000 0.00 0.00 0.00 5.18
90 91 1.457346 CACCTTTGAGATGGGTCAGC 58.543 55.000 0.00 0.00 0.00 4.26
91 92 1.004044 AGCACCTTTGAGATGGGTCAG 59.996 52.381 0.00 0.00 0.00 3.51
92 93 1.067295 AGCACCTTTGAGATGGGTCA 58.933 50.000 0.00 0.00 0.00 4.02
93 94 2.206576 AAGCACCTTTGAGATGGGTC 57.793 50.000 0.00 0.00 0.00 4.46
94 95 4.721776 TCTATAAGCACCTTTGAGATGGGT 59.278 41.667 0.00 0.00 0.00 4.51
95 96 5.296151 TCTATAAGCACCTTTGAGATGGG 57.704 43.478 0.00 0.00 0.00 4.00
96 97 8.908786 TTATTCTATAAGCACCTTTGAGATGG 57.091 34.615 0.00 0.00 0.00 3.51
129 130 9.398538 GGAACGGAGAGAGTAGTATGATAATAT 57.601 37.037 0.00 0.00 0.00 1.28
130 131 8.380867 TGGAACGGAGAGAGTAGTATGATAATA 58.619 37.037 0.00 0.00 0.00 0.98
131 132 7.175293 GTGGAACGGAGAGAGTAGTATGATAAT 59.825 40.741 0.00 0.00 0.00 1.28
132 133 6.485984 GTGGAACGGAGAGAGTAGTATGATAA 59.514 42.308 0.00 0.00 0.00 1.75
133 134 5.996513 GTGGAACGGAGAGAGTAGTATGATA 59.003 44.000 0.00 0.00 0.00 2.15
134 135 4.822896 GTGGAACGGAGAGAGTAGTATGAT 59.177 45.833 0.00 0.00 0.00 2.45
135 136 4.197750 GTGGAACGGAGAGAGTAGTATGA 58.802 47.826 0.00 0.00 0.00 2.15
136 137 3.945921 TGTGGAACGGAGAGAGTAGTATG 59.054 47.826 0.00 0.00 42.39 2.39
137 138 4.232188 TGTGGAACGGAGAGAGTAGTAT 57.768 45.455 0.00 0.00 42.39 2.12
138 139 3.708403 TGTGGAACGGAGAGAGTAGTA 57.292 47.619 0.00 0.00 42.39 1.82
139 140 2.581216 TGTGGAACGGAGAGAGTAGT 57.419 50.000 0.00 0.00 42.39 2.73
140 141 3.193691 ACATTGTGGAACGGAGAGAGTAG 59.806 47.826 0.00 0.00 42.39 2.57
141 142 3.162666 ACATTGTGGAACGGAGAGAGTA 58.837 45.455 0.00 0.00 42.39 2.59
142 143 1.971357 ACATTGTGGAACGGAGAGAGT 59.029 47.619 0.00 0.00 42.39 3.24
143 144 2.751166 ACATTGTGGAACGGAGAGAG 57.249 50.000 0.00 0.00 42.39 3.20
144 145 3.056821 CACTACATTGTGGAACGGAGAGA 60.057 47.826 7.20 0.00 42.39 3.10
145 146 3.254060 CACTACATTGTGGAACGGAGAG 58.746 50.000 7.20 0.00 42.39 3.20
146 147 2.611971 GCACTACATTGTGGAACGGAGA 60.612 50.000 7.20 0.00 42.39 3.71
147 148 1.732259 GCACTACATTGTGGAACGGAG 59.268 52.381 7.20 0.00 42.39 4.63
148 149 1.803334 GCACTACATTGTGGAACGGA 58.197 50.000 7.20 0.00 42.39 4.69
149 150 0.442310 CGCACTACATTGTGGAACGG 59.558 55.000 7.20 0.00 42.39 4.44
150 151 1.126113 GACGCACTACATTGTGGAACG 59.874 52.381 7.20 11.56 42.39 3.95
151 152 1.463444 GGACGCACTACATTGTGGAAC 59.537 52.381 7.20 0.00 38.31 3.62
152 153 1.070914 TGGACGCACTACATTGTGGAA 59.929 47.619 7.20 0.00 38.31 3.53
153 154 0.682292 TGGACGCACTACATTGTGGA 59.318 50.000 7.20 0.00 38.31 4.02
154 155 0.796312 GTGGACGCACTACATTGTGG 59.204 55.000 0.00 0.00 38.31 4.17
155 156 1.507562 TGTGGACGCACTACATTGTG 58.492 50.000 0.00 0.00 40.62 3.33
156 157 2.472695 ATGTGGACGCACTACATTGT 57.527 45.000 6.42 0.00 45.94 2.71
157 158 3.494626 GGATATGTGGACGCACTACATTG 59.505 47.826 14.80 0.00 45.94 2.82
158 159 3.494398 GGGATATGTGGACGCACTACATT 60.494 47.826 14.80 6.05 45.94 2.71
160 161 1.411246 GGGATATGTGGACGCACTACA 59.589 52.381 2.42 2.42 43.62 2.74
161 162 1.602165 CGGGATATGTGGACGCACTAC 60.602 57.143 0.00 0.00 0.00 2.73
162 163 0.671796 CGGGATATGTGGACGCACTA 59.328 55.000 0.00 0.00 0.00 2.74
163 164 1.040893 TCGGGATATGTGGACGCACT 61.041 55.000 0.00 0.00 0.00 4.40
164 165 0.597637 CTCGGGATATGTGGACGCAC 60.598 60.000 0.00 0.00 0.00 5.34
165 166 0.753848 TCTCGGGATATGTGGACGCA 60.754 55.000 0.00 0.00 0.00 5.24
166 167 0.603569 ATCTCGGGATATGTGGACGC 59.396 55.000 0.00 0.00 0.00 5.19
167 168 3.386768 AAATCTCGGGATATGTGGACG 57.613 47.619 0.00 0.00 0.00 4.79
168 169 7.745620 AATTTAAATCTCGGGATATGTGGAC 57.254 36.000 0.00 0.00 0.00 4.02
169 170 9.854668 TTAAATTTAAATCTCGGGATATGTGGA 57.145 29.630 8.20 0.00 0.00 4.02
170 171 9.893305 GTTAAATTTAAATCTCGGGATATGTGG 57.107 33.333 12.14 0.00 0.00 4.17
171 172 9.893305 GGTTAAATTTAAATCTCGGGATATGTG 57.107 33.333 12.14 0.00 0.00 3.21
172 173 8.780249 CGGTTAAATTTAAATCTCGGGATATGT 58.220 33.333 12.14 0.00 0.00 2.29
173 174 8.780249 ACGGTTAAATTTAAATCTCGGGATATG 58.220 33.333 12.14 0.00 0.00 1.78
174 175 8.913487 ACGGTTAAATTTAAATCTCGGGATAT 57.087 30.769 12.14 0.00 0.00 1.63
175 176 9.829507 TTACGGTTAAATTTAAATCTCGGGATA 57.170 29.630 12.14 0.00 0.00 2.59
176 177 8.735692 TTACGGTTAAATTTAAATCTCGGGAT 57.264 30.769 12.14 0.00 0.00 3.85
177 178 8.558973 TTTACGGTTAAATTTAAATCTCGGGA 57.441 30.769 12.14 0.00 0.00 5.14
178 179 9.791820 AATTTACGGTTAAATTTAAATCTCGGG 57.208 29.630 12.14 0.80 42.76 5.14
191 192 9.513727 GACTTGTTGGTTAAATTTACGGTTAAA 57.486 29.630 0.00 0.00 0.00 1.52
192 193 8.134261 GGACTTGTTGGTTAAATTTACGGTTAA 58.866 33.333 0.00 0.00 0.00 2.01
193 194 7.519649 CGGACTTGTTGGTTAAATTTACGGTTA 60.520 37.037 0.00 0.00 0.00 2.85
194 195 6.506147 GGACTTGTTGGTTAAATTTACGGTT 58.494 36.000 0.00 0.00 0.00 4.44
195 196 5.277925 CGGACTTGTTGGTTAAATTTACGGT 60.278 40.000 0.00 0.00 0.00 4.83
196 197 5.049543 TCGGACTTGTTGGTTAAATTTACGG 60.050 40.000 0.00 0.00 0.00 4.02
197 198 5.988092 TCGGACTTGTTGGTTAAATTTACG 58.012 37.500 0.00 0.00 0.00 3.18
198 199 7.148869 GCAATCGGACTTGTTGGTTAAATTTAC 60.149 37.037 0.00 0.00 0.00 2.01
199 200 6.864165 GCAATCGGACTTGTTGGTTAAATTTA 59.136 34.615 0.00 0.00 0.00 1.40
200 201 5.694458 GCAATCGGACTTGTTGGTTAAATTT 59.306 36.000 0.00 0.00 0.00 1.82
201 202 5.227152 GCAATCGGACTTGTTGGTTAAATT 58.773 37.500 0.00 0.00 0.00 1.82
202 203 4.614993 CGCAATCGGACTTGTTGGTTAAAT 60.615 41.667 0.00 0.00 0.00 1.40
203 204 3.304123 CGCAATCGGACTTGTTGGTTAAA 60.304 43.478 0.00 0.00 0.00 1.52
204 205 2.224549 CGCAATCGGACTTGTTGGTTAA 59.775 45.455 0.00 0.00 0.00 2.01
205 206 1.801771 CGCAATCGGACTTGTTGGTTA 59.198 47.619 0.00 0.00 0.00 2.85
206 207 0.591170 CGCAATCGGACTTGTTGGTT 59.409 50.000 0.00 0.00 0.00 3.67
207 208 2.244000 CGCAATCGGACTTGTTGGT 58.756 52.632 0.00 0.00 0.00 3.67
219 220 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
220 221 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
221 222 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
222 223 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
223 224 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
224 225 2.287368 GGTATAATTTTTGCTCCCGCCG 60.287 50.000 0.00 0.00 34.43 6.46
225 226 2.691011 TGGTATAATTTTTGCTCCCGCC 59.309 45.455 0.00 0.00 34.43 6.13
226 227 3.380320 AGTGGTATAATTTTTGCTCCCGC 59.620 43.478 0.00 0.00 0.00 6.13
227 228 6.687081 TTAGTGGTATAATTTTTGCTCCCG 57.313 37.500 0.00 0.00 0.00 5.14
228 229 9.529325 GAATTTAGTGGTATAATTTTTGCTCCC 57.471 33.333 0.00 0.00 0.00 4.30
270 271 8.631797 GGCGGGAATAAAAATTATACCACTTAA 58.368 33.333 0.00 0.00 0.00 1.85
271 272 7.041235 CGGCGGGAATAAAAATTATACCACTTA 60.041 37.037 0.00 0.00 0.00 2.24
272 273 6.238814 CGGCGGGAATAAAAATTATACCACTT 60.239 38.462 0.00 0.00 0.00 3.16
273 274 5.239963 CGGCGGGAATAAAAATTATACCACT 59.760 40.000 0.00 0.00 0.00 4.00
274 275 5.454520 CGGCGGGAATAAAAATTATACCAC 58.545 41.667 0.00 0.00 0.00 4.16
275 276 4.023021 GCGGCGGGAATAAAAATTATACCA 60.023 41.667 9.78 0.00 0.00 3.25
276 277 4.023021 TGCGGCGGGAATAAAAATTATACC 60.023 41.667 9.78 0.00 0.00 2.73
277 278 5.110940 TGCGGCGGGAATAAAAATTATAC 57.889 39.130 9.78 0.00 0.00 1.47
278 279 4.822896 ACTGCGGCGGGAATAAAAATTATA 59.177 37.500 14.26 0.00 0.00 0.98
279 280 3.634910 ACTGCGGCGGGAATAAAAATTAT 59.365 39.130 14.26 0.00 0.00 1.28
280 281 3.018149 ACTGCGGCGGGAATAAAAATTA 58.982 40.909 14.26 0.00 0.00 1.40
281 282 1.822371 ACTGCGGCGGGAATAAAAATT 59.178 42.857 14.26 0.00 0.00 1.82
282 283 1.470051 ACTGCGGCGGGAATAAAAAT 58.530 45.000 14.26 0.00 0.00 1.82
283 284 1.068194 CAACTGCGGCGGGAATAAAAA 60.068 47.619 14.26 0.00 0.00 1.94
284 285 0.523966 CAACTGCGGCGGGAATAAAA 59.476 50.000 14.26 0.00 0.00 1.52
285 286 1.309499 CCAACTGCGGCGGGAATAAA 61.309 55.000 14.26 0.00 0.00 1.40
286 287 1.747367 CCAACTGCGGCGGGAATAA 60.747 57.895 14.26 0.00 0.00 1.40
287 288 2.124901 CCAACTGCGGCGGGAATA 60.125 61.111 14.26 0.00 0.00 1.75
288 289 4.344865 ACCAACTGCGGCGGGAAT 62.345 61.111 14.26 0.00 0.00 3.01
294 295 2.251642 AAACGAGACCAACTGCGGC 61.252 57.895 0.00 0.00 0.00 6.53
295 296 1.569493 CAAACGAGACCAACTGCGG 59.431 57.895 0.00 0.00 0.00 5.69
296 297 1.082756 GCAAACGAGACCAACTGCG 60.083 57.895 0.00 0.00 0.00 5.18
297 298 1.508632 TAGCAAACGAGACCAACTGC 58.491 50.000 0.00 0.00 0.00 4.40
298 299 4.749245 ATTTAGCAAACGAGACCAACTG 57.251 40.909 0.00 0.00 0.00 3.16
299 300 7.101054 TGTATATTTAGCAAACGAGACCAACT 58.899 34.615 0.00 0.00 0.00 3.16
300 301 7.064253 ACTGTATATTTAGCAAACGAGACCAAC 59.936 37.037 0.00 0.00 0.00 3.77
301 302 7.101054 ACTGTATATTTAGCAAACGAGACCAA 58.899 34.615 0.00 0.00 0.00 3.67
302 303 6.636705 ACTGTATATTTAGCAAACGAGACCA 58.363 36.000 0.00 0.00 0.00 4.02
303 304 6.755141 TGACTGTATATTTAGCAAACGAGACC 59.245 38.462 0.00 0.00 0.00 3.85
304 305 7.751047 TGACTGTATATTTAGCAAACGAGAC 57.249 36.000 0.00 0.00 0.00 3.36
305 306 8.766000 TTTGACTGTATATTTAGCAAACGAGA 57.234 30.769 0.00 0.00 0.00 4.04
306 307 8.656849 ACTTTGACTGTATATTTAGCAAACGAG 58.343 33.333 0.00 0.00 0.00 4.18
307 308 8.542497 ACTTTGACTGTATATTTAGCAAACGA 57.458 30.769 0.00 0.00 0.00 3.85
320 321 8.926710 CGTTTTGAGATCTAACTTTGACTGTAT 58.073 33.333 0.00 0.00 0.00 2.29
321 322 8.139350 TCGTTTTGAGATCTAACTTTGACTGTA 58.861 33.333 0.00 0.00 0.00 2.74
322 323 6.984474 TCGTTTTGAGATCTAACTTTGACTGT 59.016 34.615 0.00 0.00 0.00 3.55
323 324 7.408132 TCGTTTTGAGATCTAACTTTGACTG 57.592 36.000 0.00 0.00 0.00 3.51
324 325 7.306632 CGTTCGTTTTGAGATCTAACTTTGACT 60.307 37.037 0.00 0.00 0.00 3.41
325 326 6.786103 CGTTCGTTTTGAGATCTAACTTTGAC 59.214 38.462 0.00 0.00 0.00 3.18
326 327 6.563381 GCGTTCGTTTTGAGATCTAACTTTGA 60.563 38.462 0.00 0.00 0.00 2.69
327 328 5.560378 GCGTTCGTTTTGAGATCTAACTTTG 59.440 40.000 0.00 0.00 0.00 2.77
328 329 5.235616 TGCGTTCGTTTTGAGATCTAACTTT 59.764 36.000 0.00 0.00 0.00 2.66
329 330 4.748102 TGCGTTCGTTTTGAGATCTAACTT 59.252 37.500 0.00 0.00 0.00 2.66
330 331 4.150098 GTGCGTTCGTTTTGAGATCTAACT 59.850 41.667 0.00 0.00 0.00 2.24
331 332 4.150098 AGTGCGTTCGTTTTGAGATCTAAC 59.850 41.667 0.00 0.00 0.00 2.34
332 333 4.304110 AGTGCGTTCGTTTTGAGATCTAA 58.696 39.130 0.00 0.00 0.00 2.10
333 334 3.909430 AGTGCGTTCGTTTTGAGATCTA 58.091 40.909 0.00 0.00 0.00 1.98
334 335 2.755650 AGTGCGTTCGTTTTGAGATCT 58.244 42.857 0.00 0.00 0.00 2.75
335 336 3.427528 TGTAGTGCGTTCGTTTTGAGATC 59.572 43.478 0.00 0.00 0.00 2.75
336 337 3.386486 TGTAGTGCGTTCGTTTTGAGAT 58.614 40.909 0.00 0.00 0.00 2.75
337 338 2.811855 TGTAGTGCGTTCGTTTTGAGA 58.188 42.857 0.00 0.00 0.00 3.27
338 339 3.788434 ATGTAGTGCGTTCGTTTTGAG 57.212 42.857 0.00 0.00 0.00 3.02
339 340 3.310227 ACAATGTAGTGCGTTCGTTTTGA 59.690 39.130 0.00 0.00 0.00 2.69
340 341 3.417321 CACAATGTAGTGCGTTCGTTTTG 59.583 43.478 0.00 0.00 32.04 2.44
341 342 3.547214 CCACAATGTAGTGCGTTCGTTTT 60.547 43.478 0.00 0.00 38.18 2.43
342 343 2.032377 CCACAATGTAGTGCGTTCGTTT 60.032 45.455 0.00 0.00 38.18 3.60
343 344 1.529438 CCACAATGTAGTGCGTTCGTT 59.471 47.619 0.00 0.00 38.18 3.85
344 345 1.144969 CCACAATGTAGTGCGTTCGT 58.855 50.000 0.00 0.00 38.18 3.85
345 346 1.144969 ACCACAATGTAGTGCGTTCG 58.855 50.000 0.00 0.00 38.18 3.95
346 347 2.289547 ACAACCACAATGTAGTGCGTTC 59.710 45.455 0.00 0.00 38.18 3.95
347 348 2.032799 CACAACCACAATGTAGTGCGTT 59.967 45.455 0.00 0.00 38.18 4.84
348 349 1.601903 CACAACCACAATGTAGTGCGT 59.398 47.619 0.00 0.00 38.18 5.24
349 350 1.069296 CCACAACCACAATGTAGTGCG 60.069 52.381 0.00 0.00 38.18 5.34
350 351 2.226330 TCCACAACCACAATGTAGTGC 58.774 47.619 0.00 0.00 38.18 4.40
351 352 4.278170 ACATTCCACAACCACAATGTAGTG 59.722 41.667 0.00 0.00 37.63 2.74
352 353 4.469657 ACATTCCACAACCACAATGTAGT 58.530 39.130 0.00 0.00 37.63 2.73
353 354 6.757897 ATACATTCCACAACCACAATGTAG 57.242 37.500 8.77 0.00 42.25 2.74
354 355 6.317642 GCTATACATTCCACAACCACAATGTA 59.682 38.462 5.96 5.96 42.82 2.29
355 356 5.125417 GCTATACATTCCACAACCACAATGT 59.875 40.000 0.00 0.00 41.33 2.71
356 357 5.357878 AGCTATACATTCCACAACCACAATG 59.642 40.000 0.00 0.00 33.27 2.82
357 358 5.357878 CAGCTATACATTCCACAACCACAAT 59.642 40.000 0.00 0.00 0.00 2.71
358 359 4.699735 CAGCTATACATTCCACAACCACAA 59.300 41.667 0.00 0.00 0.00 3.33
359 360 4.260985 CAGCTATACATTCCACAACCACA 58.739 43.478 0.00 0.00 0.00 4.17
360 361 3.627577 CCAGCTATACATTCCACAACCAC 59.372 47.826 0.00 0.00 0.00 4.16
361 362 3.884895 CCAGCTATACATTCCACAACCA 58.115 45.455 0.00 0.00 0.00 3.67
362 363 2.618709 GCCAGCTATACATTCCACAACC 59.381 50.000 0.00 0.00 0.00 3.77
363 364 2.618709 GGCCAGCTATACATTCCACAAC 59.381 50.000 0.00 0.00 0.00 3.32
364 365 2.240921 TGGCCAGCTATACATTCCACAA 59.759 45.455 0.00 0.00 0.00 3.33
365 366 1.843206 TGGCCAGCTATACATTCCACA 59.157 47.619 0.00 0.00 0.00 4.17
366 367 2.638480 TGGCCAGCTATACATTCCAC 57.362 50.000 0.00 0.00 0.00 4.02
367 368 3.660970 TTTGGCCAGCTATACATTCCA 57.339 42.857 5.11 0.00 0.00 3.53
368 369 3.891366 ACATTTGGCCAGCTATACATTCC 59.109 43.478 5.11 0.00 0.00 3.01
369 370 4.794003 GCACATTTGGCCAGCTATACATTC 60.794 45.833 5.11 0.00 0.00 2.67
370 371 3.068590 GCACATTTGGCCAGCTATACATT 59.931 43.478 5.11 0.00 0.00 2.71
371 372 2.624838 GCACATTTGGCCAGCTATACAT 59.375 45.455 5.11 0.00 0.00 2.29
372 373 2.023673 GCACATTTGGCCAGCTATACA 58.976 47.619 5.11 0.00 0.00 2.29
373 374 2.781945 GCACATTTGGCCAGCTATAC 57.218 50.000 5.11 0.00 0.00 1.47
383 384 2.876945 TTTGGCCCGGCACATTTGG 61.877 57.895 12.58 0.00 0.00 3.28
384 385 1.667510 GTTTGGCCCGGCACATTTG 60.668 57.895 12.58 0.00 0.00 2.32
385 386 2.098426 CTGTTTGGCCCGGCACATTT 62.098 55.000 12.58 0.00 0.00 2.32
386 387 2.522923 TGTTTGGCCCGGCACATT 60.523 55.556 12.58 0.00 0.00 2.71
387 388 2.990967 CTGTTTGGCCCGGCACAT 60.991 61.111 12.58 0.00 0.00 3.21
446 447 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
447 448 2.666862 TGTTTAGCCCGTGCCGTG 60.667 61.111 0.00 0.00 38.69 4.94
448 449 2.358247 CTGTTTAGCCCGTGCCGT 60.358 61.111 0.00 0.00 38.69 5.68
449 450 3.124921 CCTGTTTAGCCCGTGCCG 61.125 66.667 0.00 0.00 38.69 5.69
450 451 3.440415 GCCTGTTTAGCCCGTGCC 61.440 66.667 0.00 0.00 38.69 5.01
451 452 3.440415 GGCCTGTTTAGCCCGTGC 61.440 66.667 0.00 0.00 45.16 5.34
456 457 3.440415 GGCACGGCCTGTTTAGCC 61.440 66.667 0.00 6.50 46.69 3.93
535 536 3.500455 AAAAATAAACGGGCCGTGC 57.500 47.368 34.87 0.00 39.99 5.34
603 604 3.699538 GACTGGTTTTTAGGCCTATTGGG 59.300 47.826 14.74 3.45 38.36 4.12
604 605 3.699538 GGACTGGTTTTTAGGCCTATTGG 59.300 47.826 14.74 2.92 40.38 3.16
605 606 4.340617 TGGACTGGTTTTTAGGCCTATTG 58.659 43.478 14.74 1.86 44.11 1.90
606 607 4.668138 TGGACTGGTTTTTAGGCCTATT 57.332 40.909 14.74 0.00 44.11 1.73
607 608 4.668138 TTGGACTGGTTTTTAGGCCTAT 57.332 40.909 14.74 0.00 44.11 2.57
608 609 4.668138 ATTGGACTGGTTTTTAGGCCTA 57.332 40.909 8.91 8.91 44.11 3.93
609 610 3.542969 ATTGGACTGGTTTTTAGGCCT 57.457 42.857 11.78 11.78 44.11 5.19
610 611 3.699538 CCTATTGGACTGGTTTTTAGGCC 59.300 47.826 0.00 0.00 44.04 5.19
611 612 3.130516 GCCTATTGGACTGGTTTTTAGGC 59.869 47.826 0.00 2.63 42.27 3.93
612 613 4.399303 CAGCCTATTGGACTGGTTTTTAGG 59.601 45.833 0.00 0.00 35.39 2.69
613 614 5.253330 TCAGCCTATTGGACTGGTTTTTAG 58.747 41.667 14.14 0.00 37.76 1.85
614 615 5.249780 TCAGCCTATTGGACTGGTTTTTA 57.750 39.130 14.14 0.00 37.76 1.52
615 616 4.112634 TCAGCCTATTGGACTGGTTTTT 57.887 40.909 14.14 0.00 37.76 1.94
616 617 3.806949 TCAGCCTATTGGACTGGTTTT 57.193 42.857 14.14 0.00 37.76 2.43
617 618 3.806949 TTCAGCCTATTGGACTGGTTT 57.193 42.857 14.14 0.00 37.76 3.27
618 619 3.806949 TTTCAGCCTATTGGACTGGTT 57.193 42.857 14.14 0.00 37.76 3.67
619 620 3.806949 TTTTCAGCCTATTGGACTGGT 57.193 42.857 14.14 0.00 37.76 4.00
620 621 5.278660 GCATATTTTCAGCCTATTGGACTGG 60.279 44.000 14.14 0.00 37.76 4.00
621 622 5.300034 TGCATATTTTCAGCCTATTGGACTG 59.700 40.000 0.00 4.48 38.19 3.51
622 623 5.448654 TGCATATTTTCAGCCTATTGGACT 58.551 37.500 0.00 0.00 34.57 3.85
623 624 5.766222 CTGCATATTTTCAGCCTATTGGAC 58.234 41.667 0.00 0.00 34.57 4.02
633 634 2.353889 ACGCTGAGCTGCATATTTTCAG 59.646 45.455 1.78 6.19 38.57 3.02
634 635 2.096335 CACGCTGAGCTGCATATTTTCA 59.904 45.455 1.78 0.00 0.00 2.69
635 636 2.713011 CACGCTGAGCTGCATATTTTC 58.287 47.619 1.78 0.00 0.00 2.29
636 637 1.202222 GCACGCTGAGCTGCATATTTT 60.202 47.619 19.13 0.00 34.58 1.82
637 638 0.379669 GCACGCTGAGCTGCATATTT 59.620 50.000 19.13 0.00 34.58 1.40
638 639 0.463295 AGCACGCTGAGCTGCATATT 60.463 50.000 23.60 6.97 41.61 1.28
639 640 0.390492 TAGCACGCTGAGCTGCATAT 59.610 50.000 23.60 11.07 43.33 1.78
640 641 0.175531 TTAGCACGCTGAGCTGCATA 59.824 50.000 23.60 13.73 43.33 3.14
641 642 0.674581 TTTAGCACGCTGAGCTGCAT 60.675 50.000 23.60 14.45 43.33 3.96
642 643 1.301637 TTTAGCACGCTGAGCTGCA 60.302 52.632 23.60 11.77 43.33 4.41
643 644 1.133458 GTTTAGCACGCTGAGCTGC 59.867 57.895 17.23 17.23 43.33 5.25
644 645 1.417592 CGTTTAGCACGCTGAGCTG 59.582 57.895 1.78 1.00 43.37 4.24
645 646 3.862124 CGTTTAGCACGCTGAGCT 58.138 55.556 1.78 0.00 43.37 4.09
653 654 1.376609 CCTGATGGCCCGTTTAGCAC 61.377 60.000 0.00 0.00 0.00 4.40
654 655 1.077787 CCTGATGGCCCGTTTAGCA 60.078 57.895 0.00 0.00 0.00 3.49
655 656 3.827634 CCTGATGGCCCGTTTAGC 58.172 61.111 0.00 0.00 0.00 3.09
671 672 1.758936 AATTAGTAAACAGGCCGGCC 58.241 50.000 39.29 39.29 0.00 6.13
672 673 2.876550 CCTAATTAGTAAACAGGCCGGC 59.123 50.000 21.18 21.18 0.00 6.13
673 674 2.876550 GCCTAATTAGTAAACAGGCCGG 59.123 50.000 20.17 0.00 44.93 6.13
677 678 3.311596 GCACGGCCTAATTAGTAAACAGG 59.688 47.826 11.50 8.23 0.00 4.00
678 679 3.311596 GGCACGGCCTAATTAGTAAACAG 59.688 47.826 11.50 2.14 46.69 3.16
679 680 3.272581 GGCACGGCCTAATTAGTAAACA 58.727 45.455 11.50 0.00 46.69 2.83
680 681 3.957671 GGCACGGCCTAATTAGTAAAC 57.042 47.619 11.50 0.00 46.69 2.01
732 733 2.933878 TTAATAGCCGGGCCGTGCTG 62.934 60.000 36.09 20.51 35.69 4.41
733 734 2.260088 TTTAATAGCCGGGCCGTGCT 62.260 55.000 33.37 33.37 37.25 4.40
734 735 1.820481 TTTAATAGCCGGGCCGTGC 60.820 57.895 26.32 25.86 0.00 5.34
735 736 1.768112 CGTTTAATAGCCGGGCCGTG 61.768 60.000 26.32 17.25 0.00 4.94
736 737 1.522130 CGTTTAATAGCCGGGCCGT 60.522 57.895 26.32 10.07 0.00 5.68
737 738 1.522130 ACGTTTAATAGCCGGGCCG 60.522 57.895 21.46 21.46 0.00 6.13
738 739 0.745486 ACACGTTTAATAGCCGGGCC 60.745 55.000 17.02 0.00 0.00 5.80
739 740 0.654160 GACACGTTTAATAGCCGGGC 59.346 55.000 12.11 12.11 0.00 6.13
740 741 1.662122 GTGACACGTTTAATAGCCGGG 59.338 52.381 2.18 0.00 0.00 5.73
741 742 1.322338 CGTGACACGTTTAATAGCCGG 59.678 52.381 19.77 0.00 36.74 6.13
742 743 1.322338 CCGTGACACGTTTAATAGCCG 59.678 52.381 25.18 3.40 40.58 5.52
743 744 1.061566 GCCGTGACACGTTTAATAGCC 59.938 52.381 25.18 2.84 40.58 3.93
744 745 1.266696 CGCCGTGACACGTTTAATAGC 60.267 52.381 25.18 17.79 40.58 2.97
745 746 1.322338 CCGCCGTGACACGTTTAATAG 59.678 52.381 25.18 10.11 40.58 1.73
746 747 1.348276 CCGCCGTGACACGTTTAATA 58.652 50.000 25.18 0.00 40.58 0.98
747 748 1.293267 CCCGCCGTGACACGTTTAAT 61.293 55.000 25.18 0.00 40.58 1.40
748 749 1.955157 CCCGCCGTGACACGTTTAA 60.955 57.895 25.18 0.00 40.58 1.52
749 750 2.356075 CCCGCCGTGACACGTTTA 60.356 61.111 25.18 0.00 40.58 2.01
772 773 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
773 774 2.588877 CTAATCGTGCCTGGCCCG 60.589 66.667 17.67 17.67 0.00 6.13
774 775 2.902343 GCTAATCGTGCCTGGCCC 60.902 66.667 17.53 2.94 0.00 5.80
775 776 2.124736 TGCTAATCGTGCCTGGCC 60.125 61.111 17.53 6.66 0.00 5.36
776 777 1.709147 CTGTGCTAATCGTGCCTGGC 61.709 60.000 12.87 12.87 0.00 4.85
777 778 1.091771 CCTGTGCTAATCGTGCCTGG 61.092 60.000 0.00 0.00 0.00 4.45
778 779 1.709147 GCCTGTGCTAATCGTGCCTG 61.709 60.000 0.00 0.00 33.53 4.85
779 780 1.450312 GCCTGTGCTAATCGTGCCT 60.450 57.895 0.00 0.00 33.53 4.75
780 781 3.102097 GCCTGTGCTAATCGTGCC 58.898 61.111 0.00 0.00 33.53 5.01
821 822 1.752694 CCATACCTGGCCAAACGGG 60.753 63.158 7.01 7.12 42.81 5.28
822 823 3.918544 CCATACCTGGCCAAACGG 58.081 61.111 7.01 7.56 35.23 4.44
831 832 1.143684 CCCTCCATTCCACCATACCTG 59.856 57.143 0.00 0.00 0.00 4.00
832 833 1.010793 TCCCTCCATTCCACCATACCT 59.989 52.381 0.00 0.00 0.00 3.08
833 834 1.421646 CTCCCTCCATTCCACCATACC 59.578 57.143 0.00 0.00 0.00 2.73
834 835 2.127708 ACTCCCTCCATTCCACCATAC 58.872 52.381 0.00 0.00 0.00 2.39
835 836 2.587060 ACTCCCTCCATTCCACCATA 57.413 50.000 0.00 0.00 0.00 2.74
836 837 2.587060 TACTCCCTCCATTCCACCAT 57.413 50.000 0.00 0.00 0.00 3.55
837 838 2.587060 ATACTCCCTCCATTCCACCA 57.413 50.000 0.00 0.00 0.00 4.17
838 839 5.073144 TCAAATATACTCCCTCCATTCCACC 59.927 44.000 0.00 0.00 0.00 4.61
839 840 6.187727 TCAAATATACTCCCTCCATTCCAC 57.812 41.667 0.00 0.00 0.00 4.02
840 841 6.794493 AGATCAAATATACTCCCTCCATTCCA 59.206 38.462 0.00 0.00 0.00 3.53
841 842 7.038017 TGAGATCAAATATACTCCCTCCATTCC 60.038 40.741 0.00 0.00 0.00 3.01
842 843 7.911651 TGAGATCAAATATACTCCCTCCATTC 58.088 38.462 0.00 0.00 0.00 2.67
843 844 7.878621 TGAGATCAAATATACTCCCTCCATT 57.121 36.000 0.00 0.00 0.00 3.16
844 845 7.092533 CCATGAGATCAAATATACTCCCTCCAT 60.093 40.741 0.00 0.00 0.00 3.41
845 846 6.214208 CCATGAGATCAAATATACTCCCTCCA 59.786 42.308 0.00 0.00 0.00 3.86
846 847 6.352565 CCCATGAGATCAAATATACTCCCTCC 60.353 46.154 0.00 0.00 0.00 4.30
847 848 6.648192 CCCATGAGATCAAATATACTCCCTC 58.352 44.000 0.00 0.00 0.00 4.30
848 849 5.045286 GCCCATGAGATCAAATATACTCCCT 60.045 44.000 0.00 0.00 0.00 4.20
849 850 5.189180 GCCCATGAGATCAAATATACTCCC 58.811 45.833 0.00 0.00 0.00 4.30
850 851 5.809001 TGCCCATGAGATCAAATATACTCC 58.191 41.667 0.00 0.00 0.00 3.85
851 852 7.934855 AATGCCCATGAGATCAAATATACTC 57.065 36.000 0.00 0.00 0.00 2.59
852 853 9.458727 CTAAATGCCCATGAGATCAAATATACT 57.541 33.333 0.00 0.00 0.00 2.12
853 854 8.186821 GCTAAATGCCCATGAGATCAAATATAC 58.813 37.037 0.00 0.00 35.15 1.47
861 862 3.681897 CGTAGCTAAATGCCCATGAGATC 59.318 47.826 0.00 0.00 44.23 2.75
897 898 2.194271 GGTCGAGCTCCGTATGAAAAG 58.806 52.381 8.47 0.00 39.75 2.27
967 968 1.034838 CAGAGGACGAGACAGGGGAG 61.035 65.000 0.00 0.00 0.00 4.30
973 974 0.591659 CACGAACAGAGGACGAGACA 59.408 55.000 0.00 0.00 0.00 3.41
1208 1209 4.305769 TGAAAGGAAAAATGCAATCGGTG 58.694 39.130 0.00 0.00 0.00 4.94
1222 1223 2.228822 GCTGGAGCGAAATTGAAAGGAA 59.771 45.455 0.00 0.00 0.00 3.36
1289 1290 0.834612 TTTGGTCGGACAGGAACACT 59.165 50.000 10.76 0.00 32.29 3.55
1291 1292 0.531090 CGTTTGGTCGGACAGGAACA 60.531 55.000 10.76 0.00 0.00 3.18
1292 1293 2.231820 CGTTTGGTCGGACAGGAAC 58.768 57.895 10.76 9.80 0.00 3.62
1293 1294 4.762825 CGTTTGGTCGGACAGGAA 57.237 55.556 10.76 0.00 0.00 3.36
1301 1302 1.290203 CCTCATCATCCGTTTGGTCG 58.710 55.000 0.00 0.00 36.30 4.79
1321 1322 1.190643 GGACTTCCAGTCAGAGGGAG 58.809 60.000 6.25 0.00 46.79 4.30
1322 1323 0.487325 TGGACTTCCAGTCAGAGGGA 59.513 55.000 6.25 0.00 46.79 4.20
1323 1324 3.073228 TGGACTTCCAGTCAGAGGG 57.927 57.895 6.25 0.00 46.79 4.30
1339 1340 3.319137 TTCTTCTCGTCCACATTCTGG 57.681 47.619 0.00 0.00 42.29 3.86
1340 1341 4.931601 TCAATTCTTCTCGTCCACATTCTG 59.068 41.667 0.00 0.00 0.00 3.02
1341 1342 5.152623 TCAATTCTTCTCGTCCACATTCT 57.847 39.130 0.00 0.00 0.00 2.40
1342 1343 4.201763 GCTCAATTCTTCTCGTCCACATTC 60.202 45.833 0.00 0.00 0.00 2.67
1343 1344 3.686726 GCTCAATTCTTCTCGTCCACATT 59.313 43.478 0.00 0.00 0.00 2.71
1344 1345 3.265791 GCTCAATTCTTCTCGTCCACAT 58.734 45.455 0.00 0.00 0.00 3.21
1345 1346 2.612972 GGCTCAATTCTTCTCGTCCACA 60.613 50.000 0.00 0.00 0.00 4.17
1346 1347 2.003301 GGCTCAATTCTTCTCGTCCAC 58.997 52.381 0.00 0.00 0.00 4.02
1347 1348 1.902508 AGGCTCAATTCTTCTCGTCCA 59.097 47.619 0.00 0.00 0.00 4.02
1348 1349 2.093973 TCAGGCTCAATTCTTCTCGTCC 60.094 50.000 0.00 0.00 0.00 4.79
1349 1350 3.238108 TCAGGCTCAATTCTTCTCGTC 57.762 47.619 0.00 0.00 0.00 4.20
1350 1351 3.594134 CTTCAGGCTCAATTCTTCTCGT 58.406 45.455 0.00 0.00 0.00 4.18
1351 1352 2.351111 GCTTCAGGCTCAATTCTTCTCG 59.649 50.000 0.00 0.00 38.06 4.04
1352 1353 3.341823 TGCTTCAGGCTCAATTCTTCTC 58.658 45.455 0.00 0.00 42.39 2.87
1353 1354 3.244840 ACTGCTTCAGGCTCAATTCTTCT 60.245 43.478 0.00 0.00 42.39 2.85
1354 1355 3.080319 ACTGCTTCAGGCTCAATTCTTC 58.920 45.455 0.00 0.00 42.39 2.87
1355 1356 3.080319 GACTGCTTCAGGCTCAATTCTT 58.920 45.455 0.00 0.00 36.41 2.52
1356 1357 2.709213 GACTGCTTCAGGCTCAATTCT 58.291 47.619 0.00 0.00 36.41 2.40
1357 1358 1.396301 CGACTGCTTCAGGCTCAATTC 59.604 52.381 0.00 0.00 37.36 2.17
1358 1359 1.446907 CGACTGCTTCAGGCTCAATT 58.553 50.000 0.00 0.00 37.36 2.32
1359 1360 0.392193 CCGACTGCTTCAGGCTCAAT 60.392 55.000 0.00 0.00 37.36 2.57
1360 1361 1.004560 CCGACTGCTTCAGGCTCAA 60.005 57.895 0.00 0.00 37.36 3.02
1361 1362 2.659016 CCGACTGCTTCAGGCTCA 59.341 61.111 0.00 0.00 37.36 4.26
1362 1363 2.817396 GCCGACTGCTTCAGGCTC 60.817 66.667 6.59 0.00 45.67 4.70
1371 1372 0.238553 GTTCTTTTGGAGCCGACTGC 59.761 55.000 0.00 0.00 41.71 4.40
1372 1373 1.801178 GAGTTCTTTTGGAGCCGACTG 59.199 52.381 0.00 0.00 0.00 3.51
1373 1374 1.270893 GGAGTTCTTTTGGAGCCGACT 60.271 52.381 0.00 0.00 0.00 4.18
1374 1375 1.157585 GGAGTTCTTTTGGAGCCGAC 58.842 55.000 0.00 0.00 0.00 4.79
1375 1376 0.036306 GGGAGTTCTTTTGGAGCCGA 59.964 55.000 0.00 0.00 0.00 5.54
1376 1377 0.036875 AGGGAGTTCTTTTGGAGCCG 59.963 55.000 0.00 0.00 0.00 5.52
1377 1378 1.352687 AGAGGGAGTTCTTTTGGAGCC 59.647 52.381 0.00 0.00 0.00 4.70
1378 1379 2.039084 TCAGAGGGAGTTCTTTTGGAGC 59.961 50.000 0.00 0.00 0.00 4.70
1379 1380 3.326297 AGTCAGAGGGAGTTCTTTTGGAG 59.674 47.826 0.00 0.00 0.00 3.86
1380 1381 3.071602 CAGTCAGAGGGAGTTCTTTTGGA 59.928 47.826 0.00 0.00 0.00 3.53
1381 1382 3.406764 CAGTCAGAGGGAGTTCTTTTGG 58.593 50.000 0.00 0.00 0.00 3.28
1386 1387 2.225496 ACATCCAGTCAGAGGGAGTTCT 60.225 50.000 0.00 0.00 36.45 3.01
1388 1389 2.183679 GACATCCAGTCAGAGGGAGTT 58.816 52.381 0.00 0.00 46.77 3.01
1583 6877 4.215613 GTCTTTCACCTGTCCAAACATACC 59.784 45.833 0.00 0.00 34.13 2.73
1700 7003 1.792367 CTGAATTTCTCGTGACACGCA 59.208 47.619 22.99 11.90 42.21 5.24
1717 7028 2.727777 GTAGCATCAATACGTCGCTGA 58.272 47.619 0.00 0.00 34.18 4.26
1934 7386 1.806542 ACCACGATCAATTGCACAGAC 59.193 47.619 0.00 0.00 0.00 3.51
1973 7425 2.481276 CCCATTCGACAGAACGAGCATA 60.481 50.000 0.00 0.00 43.04 3.14
1974 7426 1.645034 CCATTCGACAGAACGAGCAT 58.355 50.000 0.00 0.00 43.04 3.79
2031 7494 6.059787 ACTTGCAATCTCTCCAAACTCTAT 57.940 37.500 0.00 0.00 0.00 1.98
2045 7511 2.353704 GCCCCTTGGTAAACTTGCAATC 60.354 50.000 0.00 0.00 0.00 2.67
2134 7600 5.612725 TTCTTTGCCTTCTTGGTCATTTT 57.387 34.783 0.00 0.00 38.35 1.82
2160 7629 6.506661 AGTTCTCCATAGATCATATGCCCTA 58.493 40.000 0.00 2.35 0.00 3.53
2220 7695 8.810041 GGAGATTTGATCATATGCCCTTATTTT 58.190 33.333 3.15 0.00 0.00 1.82
2221 7696 7.398332 GGGAGATTTGATCATATGCCCTTATTT 59.602 37.037 18.69 0.00 0.00 1.40
2248 7723 4.273318 GGATAATGGTGTGGAAGCTTTCT 58.727 43.478 6.25 0.00 0.00 2.52
2308 7783 9.638239 GGAATCAGTCAATTTGTTGCTTAATTA 57.362 29.630 0.00 0.00 0.00 1.40
2311 7786 7.048629 TGGAATCAGTCAATTTGTTGCTTAA 57.951 32.000 0.00 0.00 0.00 1.85
2323 7798 6.358974 TGTTGAGAGTATGGAATCAGTCAA 57.641 37.500 0.00 0.00 0.00 3.18
2335 7810 9.846248 GCTCATTTTTGTTATTGTTGAGAGTAT 57.154 29.630 0.00 0.00 32.77 2.12
2348 7823 9.255304 GAAGTACCAATTTGCTCATTTTTGTTA 57.745 29.630 0.00 0.00 0.00 2.41
2361 7836 3.848272 ACATGCCGAAGTACCAATTTG 57.152 42.857 0.00 0.00 0.00 2.32
2379 7854 9.891828 CAATTTGACAACTAGCTTGTTAATACA 57.108 29.630 13.23 8.40 43.60 2.29
2387 7862 7.149080 CGACATTTCAATTTGACAACTAGCTTG 60.149 37.037 0.00 0.00 35.77 4.01
2394 7869 5.458452 TGAAGCGACATTTCAATTTGACAAC 59.542 36.000 0.00 0.00 31.98 3.32
2404 7879 6.907741 TGTTGATAAATGAAGCGACATTTCA 58.092 32.000 20.88 14.30 45.37 2.69
2438 7913 5.514500 TGAACTTAGAAGGGCCTTGTAAT 57.486 39.130 29.55 19.35 30.77 1.89
2444 7919 3.876309 TGTTTGAACTTAGAAGGGCCT 57.124 42.857 0.00 0.00 0.00 5.19
2467 7942 2.276869 TCCTCACGGACCACATCTG 58.723 57.895 0.00 0.00 39.92 2.90
2478 7953 0.535797 GGAAACTAGGGGTCCTCACG 59.464 60.000 0.00 0.00 34.61 4.35
2506 7981 1.134640 TGCCATTGGAGCATGCATTTC 60.135 47.619 21.98 8.78 35.22 2.17
2524 7999 7.041508 AGCAAGACAATACAGCTATCTAAATGC 60.042 37.037 0.00 0.00 33.06 3.56
2549 8024 8.028938 TCTGGAAGAAAAAGAAAACTTGAACAG 58.971 33.333 0.00 0.00 42.31 3.16
2550 8025 7.891561 TCTGGAAGAAAAAGAAAACTTGAACA 58.108 30.769 0.00 0.00 42.31 3.18
2568 8043 2.028567 GGGATCCGCTAGAATCTGGAAG 60.029 54.545 5.45 0.00 33.48 3.46
2569 8044 1.971357 GGGATCCGCTAGAATCTGGAA 59.029 52.381 5.45 0.00 33.48 3.53
2583 8597 4.499696 CGGCTTGTCAAATTAATGGGATCC 60.500 45.833 1.92 1.92 0.00 3.36
2593 8607 4.693566 TCTCGTTATTCGGCTTGTCAAATT 59.306 37.500 0.00 0.00 40.32 1.82
2606 8620 8.186178 TCAATTTTAGAGCACTCTCGTTATTC 57.814 34.615 2.82 0.00 44.02 1.75
2669 8683 5.387113 AACCATAGCCAAAGGTGATATCA 57.613 39.130 0.00 0.00 35.42 2.15
2677 8691 4.220602 AGTTGCTAAAACCATAGCCAAAGG 59.779 41.667 4.06 0.00 46.19 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.