Multiple sequence alignment - TraesCS1A01G048300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G048300 chr1A 100.000 5010 0 0 1 5010 30116845 30121854 0.000000e+00 9252
1 TraesCS1A01G048300 chr1B 94.308 4146 178 26 772 4880 47604783 47608907 0.000000e+00 6296
2 TraesCS1A01G048300 chr1B 96.899 129 4 0 4882 5010 47614142 47614270 3.040000e-52 217
3 TraesCS1A01G048300 chr1B 95.238 84 4 0 3966 4049 47608068 47608151 3.150000e-27 134
4 TraesCS1A01G048300 chr1D 94.441 3328 135 28 768 4049 29840806 29837483 0.000000e+00 5075
5 TraesCS1A01G048300 chr1D 85.959 584 58 21 4050 4626 29837568 29837002 2.000000e-168 603
6 TraesCS1A01G048300 chr1D 86.395 147 12 5 4805 4951 394148328 394148190 2.420000e-33 154
7 TraesCS1A01G048300 chr1D 84.667 150 16 4 4805 4951 166842482 166842337 5.230000e-30 143
8 TraesCS1A01G048300 chr5B 94.557 643 26 6 1 638 533013956 533013318 0.000000e+00 985
9 TraesCS1A01G048300 chr5B 83.119 545 79 8 1009 1542 550930467 550929925 7.540000e-133 484
10 TraesCS1A01G048300 chr2B 94.565 644 22 7 1 636 728607239 728606601 0.000000e+00 983
11 TraesCS1A01G048300 chr5A 83.670 545 76 8 1009 1542 570010082 570009540 7.490000e-138 501
12 TraesCS1A01G048300 chr5D 83.119 545 79 8 1009 1542 450862938 450862396 7.540000e-133 484
13 TraesCS1A01G048300 chr2D 84.746 295 43 2 1249 1542 159702869 159702576 1.360000e-75 294
14 TraesCS1A01G048300 chr3A 82.677 254 39 5 4365 4616 737372699 737372449 2.350000e-53 220
15 TraesCS1A01G048300 chr7B 83.333 246 31 10 4376 4616 16179479 16179719 8.440000e-53 219
16 TraesCS1A01G048300 chr3B 83.099 213 31 5 4406 4616 323409699 323409490 6.620000e-44 189
17 TraesCS1A01G048300 chr7A 88.194 144 9 2 4805 4948 252193201 252193336 1.120000e-36 165
18 TraesCS1A01G048300 chr7A 86.395 147 12 5 4805 4951 187458786 187458924 2.420000e-33 154
19 TraesCS1A01G048300 chr6B 86.395 147 12 2 4805 4951 415519378 415519240 2.420000e-33 154
20 TraesCS1A01G048300 chr6D 85.714 147 13 5 4805 4951 111664763 111664901 1.120000e-31 148
21 TraesCS1A01G048300 chr6A 85.714 147 13 2 4805 4951 388408450 388408588 1.120000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G048300 chr1A 30116845 30121854 5009 False 9252 9252 100.000 1 5010 1 chr1A.!!$F1 5009
1 TraesCS1A01G048300 chr1B 47604783 47608907 4124 False 3215 6296 94.773 772 4880 2 chr1B.!!$F2 4108
2 TraesCS1A01G048300 chr1D 29837002 29840806 3804 True 2839 5075 90.200 768 4626 2 chr1D.!!$R3 3858
3 TraesCS1A01G048300 chr5B 533013318 533013956 638 True 985 985 94.557 1 638 1 chr5B.!!$R1 637
4 TraesCS1A01G048300 chr5B 550929925 550930467 542 True 484 484 83.119 1009 1542 1 chr5B.!!$R2 533
5 TraesCS1A01G048300 chr2B 728606601 728607239 638 True 983 983 94.565 1 636 1 chr2B.!!$R1 635
6 TraesCS1A01G048300 chr5A 570009540 570010082 542 True 501 501 83.670 1009 1542 1 chr5A.!!$R1 533
7 TraesCS1A01G048300 chr5D 450862396 450862938 542 True 484 484 83.119 1009 1542 1 chr5D.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 650 0.036875 AAAGAGGTTTGCGGAGGAGG 59.963 55.0 0.00 0.00 0.00 4.30 F
757 766 0.173708 AAACAAAAAGGCGCCAACGA 59.826 45.0 31.54 0.00 43.93 3.85 F
758 767 0.248866 AACAAAAAGGCGCCAACGAG 60.249 50.0 31.54 17.64 43.93 4.18 F
1550 1607 0.253347 TTCTCCCTCCTTGATGGGCT 60.253 55.0 0.00 0.00 43.04 5.19 F
2816 2882 0.105709 AGGGGAAGGTGTTGGTTTGG 60.106 55.0 0.00 0.00 0.00 3.28 F
2995 3061 0.391661 GAAGCGACAGAGCAATGGGA 60.392 55.0 0.00 0.00 40.15 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1653 0.036010 AGACGACATTGCCCTTCTGG 60.036 55.0 0.00 0.0 37.09 3.86 R
1777 1834 0.249155 CAAATATGGGCCGCTGCTTG 60.249 55.0 0.00 0.0 37.74 4.01 R
1879 1936 0.250234 TCAGATTGAAGGCCTGGACG 59.750 55.0 5.69 0.0 0.00 4.79 R
2992 3058 0.179045 CCCGAGGACATTGTGATCCC 60.179 60.0 0.00 0.0 35.38 3.85 R
3964 4034 0.310543 GTTTCGTGCCATGCTTGACA 59.689 50.0 0.22 0.0 0.00 3.58 R
4903 5088 0.178958 AGACTCCTCCCACGTCAAGT 60.179 55.0 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.538053 TCATGTGACCCTTTTGAAATGCTAA 59.462 36.000 0.00 0.00 0.00 3.09
113 114 5.964958 TGAAATCAGGTCTTTCATGGTTC 57.035 39.130 0.00 0.00 37.61 3.62
116 117 6.494491 TGAAATCAGGTCTTTCATGGTTCAAT 59.506 34.615 0.00 0.00 37.61 2.57
414 419 4.942944 TCTGTATCTGGACTTGGGAAGTA 58.057 43.478 0.00 0.00 43.03 2.24
424 429 6.202331 TGGACTTGGGAAGTAAGAGATATGA 58.798 40.000 0.00 0.00 43.03 2.15
481 490 1.070615 CACGTGGGTGTGACATGGA 59.929 57.895 7.95 0.00 42.55 3.41
488 497 2.843113 TGGGTGTGACATGGATGATGTA 59.157 45.455 0.00 0.00 45.90 2.29
490 499 4.079844 TGGGTGTGACATGGATGATGTAAT 60.080 41.667 0.00 0.00 45.90 1.89
518 527 4.463891 GTGGGCCCATCTGATTAAATATGG 59.536 45.833 31.45 0.00 38.90 2.74
580 589 1.202976 ACTTTTGAGGTGGCAGCATCT 60.203 47.619 20.04 0.00 0.00 2.90
598 607 0.474184 CTTATTGGCGGGAGGACCAT 59.526 55.000 0.00 0.00 40.22 3.55
604 613 2.857744 GCGGGAGGACCATCGGTAG 61.858 68.421 0.00 0.00 40.22 3.18
639 648 2.358322 AAAAAGAGGTTTGCGGAGGA 57.642 45.000 0.00 0.00 0.00 3.71
640 649 1.897560 AAAAGAGGTTTGCGGAGGAG 58.102 50.000 0.00 0.00 0.00 3.69
641 650 0.036875 AAAGAGGTTTGCGGAGGAGG 59.963 55.000 0.00 0.00 0.00 4.30
642 651 1.842381 AAGAGGTTTGCGGAGGAGGG 61.842 60.000 0.00 0.00 0.00 4.30
643 652 3.330720 AGGTTTGCGGAGGAGGGG 61.331 66.667 0.00 0.00 0.00 4.79
652 661 4.864334 GAGGAGGGGCGCCATGTG 62.864 72.222 30.85 0.00 0.00 3.21
665 674 0.813184 CCATGTGTGGCTCATGAACC 59.187 55.000 8.28 8.28 43.47 3.62
666 675 0.813184 CATGTGTGGCTCATGAACCC 59.187 55.000 12.62 8.71 43.47 4.11
667 676 0.323725 ATGTGTGGCTCATGAACCCC 60.324 55.000 12.62 1.39 0.00 4.95
668 677 1.074775 GTGTGGCTCATGAACCCCA 59.925 57.895 12.62 4.35 0.00 4.96
669 678 0.323725 GTGTGGCTCATGAACCCCAT 60.324 55.000 12.62 0.00 35.44 4.00
670 679 1.064758 GTGTGGCTCATGAACCCCATA 60.065 52.381 12.62 7.27 33.31 2.74
671 680 1.638070 TGTGGCTCATGAACCCCATAA 59.362 47.619 12.62 2.72 33.31 1.90
672 681 2.244510 TGTGGCTCATGAACCCCATAAT 59.755 45.455 12.62 0.00 33.31 1.28
673 682 2.887152 GTGGCTCATGAACCCCATAATC 59.113 50.000 12.62 0.00 33.31 1.75
674 683 2.158475 TGGCTCATGAACCCCATAATCC 60.158 50.000 12.62 0.00 33.31 3.01
675 684 2.519013 GCTCATGAACCCCATAATCCC 58.481 52.381 0.00 0.00 33.31 3.85
676 685 2.108952 GCTCATGAACCCCATAATCCCT 59.891 50.000 0.00 0.00 33.31 4.20
677 686 3.812167 GCTCATGAACCCCATAATCCCTC 60.812 52.174 0.00 0.00 33.31 4.30
678 687 3.654806 CTCATGAACCCCATAATCCCTCT 59.345 47.826 0.00 0.00 33.31 3.69
679 688 4.838403 TCATGAACCCCATAATCCCTCTA 58.162 43.478 0.00 0.00 33.31 2.43
680 689 5.424068 TCATGAACCCCATAATCCCTCTAT 58.576 41.667 0.00 0.00 33.31 1.98
681 690 6.580167 TCATGAACCCCATAATCCCTCTATA 58.420 40.000 0.00 0.00 33.31 1.31
682 691 7.028760 TCATGAACCCCATAATCCCTCTATAA 58.971 38.462 0.00 0.00 33.31 0.98
683 692 7.688534 TCATGAACCCCATAATCCCTCTATAAT 59.311 37.037 0.00 0.00 33.31 1.28
684 693 7.905144 TGAACCCCATAATCCCTCTATAATT 57.095 36.000 0.00 0.00 0.00 1.40
685 694 7.928873 TGAACCCCATAATCCCTCTATAATTC 58.071 38.462 0.00 0.00 0.00 2.17
686 695 6.910259 ACCCCATAATCCCTCTATAATTCC 57.090 41.667 0.00 0.00 0.00 3.01
687 696 6.594593 ACCCCATAATCCCTCTATAATTCCT 58.405 40.000 0.00 0.00 0.00 3.36
688 697 6.448387 ACCCCATAATCCCTCTATAATTCCTG 59.552 42.308 0.00 0.00 0.00 3.86
689 698 6.448387 CCCCATAATCCCTCTATAATTCCTGT 59.552 42.308 0.00 0.00 0.00 4.00
690 699 7.036571 CCCCATAATCCCTCTATAATTCCTGTT 60.037 40.741 0.00 0.00 0.00 3.16
691 700 8.049721 CCCATAATCCCTCTATAATTCCTGTTC 58.950 40.741 0.00 0.00 0.00 3.18
692 701 8.605947 CCATAATCCCTCTATAATTCCTGTTCA 58.394 37.037 0.00 0.00 0.00 3.18
695 704 6.688073 TCCCTCTATAATTCCTGTTCATCC 57.312 41.667 0.00 0.00 0.00 3.51
696 705 6.150332 TCCCTCTATAATTCCTGTTCATCCA 58.850 40.000 0.00 0.00 0.00 3.41
697 706 6.619437 TCCCTCTATAATTCCTGTTCATCCAA 59.381 38.462 0.00 0.00 0.00 3.53
698 707 6.712547 CCCTCTATAATTCCTGTTCATCCAAC 59.287 42.308 0.00 0.00 35.28 3.77
699 708 7.420680 CCCTCTATAATTCCTGTTCATCCAACT 60.421 40.741 0.00 0.00 35.79 3.16
700 709 7.659390 CCTCTATAATTCCTGTTCATCCAACTC 59.341 40.741 0.00 0.00 35.79 3.01
701 710 8.324191 TCTATAATTCCTGTTCATCCAACTCT 57.676 34.615 0.00 0.00 35.79 3.24
702 711 8.772250 TCTATAATTCCTGTTCATCCAACTCTT 58.228 33.333 0.00 0.00 35.79 2.85
703 712 5.972107 AATTCCTGTTCATCCAACTCTTG 57.028 39.130 0.00 0.00 35.79 3.02
704 713 4.705110 TTCCTGTTCATCCAACTCTTGA 57.295 40.909 0.00 0.00 35.79 3.02
705 714 4.916041 TCCTGTTCATCCAACTCTTGAT 57.084 40.909 0.00 0.00 35.79 2.57
706 715 4.836825 TCCTGTTCATCCAACTCTTGATC 58.163 43.478 0.00 0.00 35.79 2.92
707 716 4.286808 TCCTGTTCATCCAACTCTTGATCA 59.713 41.667 0.00 0.00 35.79 2.92
708 717 5.005740 CCTGTTCATCCAACTCTTGATCAA 58.994 41.667 8.12 8.12 35.79 2.57
709 718 5.651139 CCTGTTCATCCAACTCTTGATCAAT 59.349 40.000 8.96 0.00 35.79 2.57
710 719 6.825213 CCTGTTCATCCAACTCTTGATCAATA 59.175 38.462 8.96 0.36 35.79 1.90
711 720 7.337689 CCTGTTCATCCAACTCTTGATCAATAA 59.662 37.037 8.96 0.00 35.79 1.40
712 721 8.812513 TGTTCATCCAACTCTTGATCAATAAT 57.187 30.769 8.96 0.00 35.79 1.28
713 722 9.904198 TGTTCATCCAACTCTTGATCAATAATA 57.096 29.630 8.96 0.00 35.79 0.98
719 728 9.958180 TCCAACTCTTGATCAATAATAAAGTGA 57.042 29.630 8.96 0.00 28.90 3.41
723 732 9.453572 ACTCTTGATCAATAATAAAGTGAAGCA 57.546 29.630 8.96 0.00 28.90 3.91
732 741 9.301153 CAATAATAAAGTGAAGCATGTTAACCC 57.699 33.333 2.48 0.00 0.00 4.11
733 742 8.823220 ATAATAAAGTGAAGCATGTTAACCCT 57.177 30.769 2.48 0.00 0.00 4.34
734 743 9.914834 ATAATAAAGTGAAGCATGTTAACCCTA 57.085 29.630 2.48 0.00 0.00 3.53
735 744 8.644374 AATAAAGTGAAGCATGTTAACCCTAA 57.356 30.769 2.48 0.00 0.00 2.69
736 745 6.969993 AAAGTGAAGCATGTTAACCCTAAA 57.030 33.333 2.48 0.00 0.00 1.85
737 746 6.969993 AAGTGAAGCATGTTAACCCTAAAA 57.030 33.333 2.48 0.00 0.00 1.52
738 747 6.969993 AGTGAAGCATGTTAACCCTAAAAA 57.030 33.333 2.48 0.00 0.00 1.94
756 765 1.003108 AAAACAAAAAGGCGCCAACG 58.997 45.000 31.54 14.40 44.07 4.10
757 766 0.173708 AAACAAAAAGGCGCCAACGA 59.826 45.000 31.54 0.00 43.93 3.85
758 767 0.248866 AACAAAAAGGCGCCAACGAG 60.249 50.000 31.54 17.64 43.93 4.18
759 768 1.371635 CAAAAAGGCGCCAACGAGG 60.372 57.895 31.54 9.55 43.93 4.63
760 769 1.527380 AAAAAGGCGCCAACGAGGA 60.527 52.632 31.54 0.00 43.93 3.71
761 770 1.515521 AAAAAGGCGCCAACGAGGAG 61.516 55.000 31.54 0.74 43.93 3.69
762 771 3.901797 AAAGGCGCCAACGAGGAGG 62.902 63.158 31.54 0.00 43.93 4.30
765 774 4.373116 GCGCCAACGAGGAGGACA 62.373 66.667 0.00 0.00 43.93 4.02
766 775 2.432628 CGCCAACGAGGAGGACAC 60.433 66.667 2.86 0.00 43.93 3.67
828 840 1.203758 GCCTCCACAAATAAAACGGGG 59.796 52.381 0.00 0.00 0.00 5.73
829 841 2.521126 CCTCCACAAATAAAACGGGGT 58.479 47.619 0.00 0.00 0.00 4.95
830 842 2.230266 CCTCCACAAATAAAACGGGGTG 59.770 50.000 0.00 0.00 0.00 4.61
1542 1599 1.343580 GGCTCCTACTTCTCCCTCCTT 60.344 57.143 0.00 0.00 0.00 3.36
1545 1602 3.922375 CTCCTACTTCTCCCTCCTTGAT 58.078 50.000 0.00 0.00 0.00 2.57
1550 1607 0.253347 TTCTCCCTCCTTGATGGGCT 60.253 55.000 0.00 0.00 43.04 5.19
1575 1632 4.148825 GACCAGCAGGCCGACGAT 62.149 66.667 0.00 0.00 39.06 3.73
1596 1653 2.047179 GAGGACACCTTCGTGCCC 60.047 66.667 0.00 0.00 44.40 5.36
1665 1722 1.649267 GATCCAAGATTTCGCCGCC 59.351 57.895 0.00 0.00 0.00 6.13
1708 1765 1.529010 CAGGCCAACAAGCTGGTGA 60.529 57.895 5.01 0.00 37.20 4.02
1719 1776 2.062971 AGCTGGTGAAATGGCTATGG 57.937 50.000 0.00 0.00 32.94 2.74
1738 1795 3.182105 GGGGGCATACTACTGGGAT 57.818 57.895 0.00 0.00 0.00 3.85
1792 1849 1.526686 CATCAAGCAGCGGCCCATA 60.527 57.895 4.82 0.00 42.56 2.74
1804 1861 2.802774 GCGGCCCATATTTGTGGAATTG 60.803 50.000 0.00 0.00 42.02 2.32
1879 1936 2.879070 CTGGCTGCGCGATCATGTC 61.879 63.158 12.10 0.00 0.00 3.06
2002 2059 3.637432 GGAGACAGTGATGACGATGATC 58.363 50.000 0.00 0.00 0.00 2.92
2088 2145 1.228552 AGCTGCCGACATGGGTTTT 60.229 52.632 0.00 0.00 38.63 2.43
2092 2149 2.566010 CCGACATGGGTTTTGGCG 59.434 61.111 0.00 0.00 45.20 5.69
2222 2288 1.742768 GATCTGCCACCTACCCTCG 59.257 63.158 0.00 0.00 0.00 4.63
2226 2292 3.834799 GCCACCTACCCTCGACCG 61.835 72.222 0.00 0.00 0.00 4.79
2380 2446 1.615384 GGCAAGCATCTGAAGGAGGTT 60.615 52.381 0.00 0.00 0.00 3.50
2500 2566 5.538118 CATATAATGAAGACGGCCACACTA 58.462 41.667 2.24 0.00 0.00 2.74
2506 2572 1.781786 AGACGGCCACACTATCATCT 58.218 50.000 2.24 0.00 0.00 2.90
2570 2636 0.745486 TCCGATACTGAAGGTCGCGA 60.745 55.000 3.71 3.71 34.25 5.87
2605 2671 3.567797 GCTGATCTGGCCGCGTTC 61.568 66.667 4.92 0.00 0.00 3.95
2720 2786 3.367292 GGTACATTTGGAGCATTGTGTGG 60.367 47.826 0.00 0.00 0.00 4.17
2816 2882 0.105709 AGGGGAAGGTGTTGGTTTGG 60.106 55.000 0.00 0.00 0.00 3.28
2926 2992 2.769095 AGATGCTCTGGTTAAGGTCCTC 59.231 50.000 0.00 0.00 0.00 3.71
2992 3058 0.644331 CGAGAAGCGACAGAGCAATG 59.356 55.000 0.00 0.00 44.57 2.82
2995 3061 0.391661 GAAGCGACAGAGCAATGGGA 60.392 55.000 0.00 0.00 40.15 4.37
3073 3139 1.063912 CTCAGTGCTGTAGAGAGCGAG 59.936 57.143 0.00 0.00 42.32 5.03
3117 3183 2.854777 CGGATGAAGTTAAGCTCGAGTG 59.145 50.000 15.13 0.00 0.00 3.51
3139 3205 1.207791 ATAGGAAGACACTGCTGGGG 58.792 55.000 0.00 0.00 0.00 4.96
3156 3222 3.153919 TGGGGTACTTGCACAAAATCTC 58.846 45.455 0.00 0.00 0.00 2.75
3175 3241 3.021263 GCCCTAGGCCCTTCCCAA 61.021 66.667 2.05 0.00 44.06 4.12
3225 3291 3.234386 GTGTGAAATTAAGCAGCGGTTC 58.766 45.455 0.00 0.00 0.00 3.62
3375 3444 4.146745 CATCCACAGATGTTCCTGATCA 57.853 45.455 0.00 0.00 44.22 2.92
3528 3597 3.370366 GTCAACTGCTCTTATCAGCACAG 59.630 47.826 0.00 0.00 44.73 3.66
3601 3670 3.592059 GCTTGTCGAACCCATGTACTTA 58.408 45.455 0.00 0.00 0.00 2.24
3769 3838 7.232127 TCTGAATTCTCTGAAAAGCTTTGGAAT 59.768 33.333 13.54 13.61 0.00 3.01
3778 3847 4.607293 AAAGCTTTGGAATGGAAGTTCC 57.393 40.909 15.50 15.50 46.35 3.62
3817 3886 2.630098 TCTCACTTTCAGTCACTGGGAG 59.370 50.000 4.57 5.91 31.51 4.30
3889 3959 4.860022 AGGAATTCGGAGATGGTTCAAAT 58.140 39.130 0.00 0.00 35.04 2.32
3952 4022 3.335579 GCGAAGAAAGGGACTACATGTT 58.664 45.455 2.30 0.00 38.49 2.71
3964 4034 5.873164 GGGACTACATGTTGACGATAAAGTT 59.127 40.000 14.37 0.00 0.00 2.66
4054 4210 6.281848 GAAACTGTACATTCTGTTTCGTCA 57.718 37.500 17.52 0.00 42.00 4.35
4055 4211 6.671614 AAACTGTACATTCTGTTTCGTCAA 57.328 33.333 0.00 0.00 35.62 3.18
4056 4212 5.907197 ACTGTACATTCTGTTTCGTCAAG 57.093 39.130 0.00 0.00 0.00 3.02
4057 4213 4.211374 ACTGTACATTCTGTTTCGTCAAGC 59.789 41.667 0.00 0.00 0.00 4.01
4058 4214 4.123506 TGTACATTCTGTTTCGTCAAGCA 58.876 39.130 0.00 0.00 0.00 3.91
4059 4215 4.754618 TGTACATTCTGTTTCGTCAAGCAT 59.245 37.500 0.00 0.00 0.00 3.79
4060 4216 4.151258 ACATTCTGTTTCGTCAAGCATG 57.849 40.909 0.00 0.00 0.00 4.06
4061 4217 3.058016 ACATTCTGTTTCGTCAAGCATGG 60.058 43.478 0.00 0.00 0.00 3.66
4062 4218 0.874390 TCTGTTTCGTCAAGCATGGC 59.126 50.000 0.00 0.00 0.00 4.40
4063 4219 0.592637 CTGTTTCGTCAAGCATGGCA 59.407 50.000 0.00 0.00 0.00 4.92
4064 4220 0.310543 TGTTTCGTCAAGCATGGCAC 59.689 50.000 0.00 0.00 0.00 5.01
4065 4221 0.725784 GTTTCGTCAAGCATGGCACG 60.726 55.000 0.00 0.00 0.00 5.34
4066 4222 0.882484 TTTCGTCAAGCATGGCACGA 60.882 50.000 2.22 2.22 39.42 4.35
4067 4223 0.882484 TTCGTCAAGCATGGCACGAA 60.882 50.000 12.71 12.71 46.16 3.85
4068 4224 0.882484 TCGTCAAGCATGGCACGAAA 60.882 50.000 3.72 0.00 38.28 3.46
4069 4225 0.725784 CGTCAAGCATGGCACGAAAC 60.726 55.000 0.00 0.00 34.06 2.78
4070 4226 0.310543 GTCAAGCATGGCACGAAACA 59.689 50.000 0.00 0.00 0.00 2.83
4071 4227 0.592637 TCAAGCATGGCACGAAACAG 59.407 50.000 0.00 0.00 0.00 3.16
4072 4228 1.005294 CAAGCATGGCACGAAACAGC 61.005 55.000 0.00 0.00 0.00 4.40
4078 4234 4.090057 GCACGAAACAGCCGGCTC 62.090 66.667 30.29 15.41 0.00 4.70
4079 4235 3.777925 CACGAAACAGCCGGCTCG 61.778 66.667 30.29 28.90 37.33 5.03
4092 4248 4.081050 GCTCGGGCCAAAGAAAGT 57.919 55.556 4.39 0.00 0.00 2.66
4093 4249 1.581447 GCTCGGGCCAAAGAAAGTG 59.419 57.895 4.39 0.00 0.00 3.16
4094 4250 1.172812 GCTCGGGCCAAAGAAAGTGT 61.173 55.000 4.39 0.00 0.00 3.55
4095 4251 1.880646 GCTCGGGCCAAAGAAAGTGTA 60.881 52.381 4.39 0.00 0.00 2.90
4096 4252 2.076863 CTCGGGCCAAAGAAAGTGTAG 58.923 52.381 4.39 0.00 0.00 2.74
4097 4253 1.695242 TCGGGCCAAAGAAAGTGTAGA 59.305 47.619 4.39 0.00 0.00 2.59
4098 4254 2.304761 TCGGGCCAAAGAAAGTGTAGAT 59.695 45.455 4.39 0.00 0.00 1.98
4099 4255 3.516300 TCGGGCCAAAGAAAGTGTAGATA 59.484 43.478 4.39 0.00 0.00 1.98
4100 4256 4.163458 TCGGGCCAAAGAAAGTGTAGATAT 59.837 41.667 4.39 0.00 0.00 1.63
4101 4257 4.273480 CGGGCCAAAGAAAGTGTAGATATG 59.727 45.833 4.39 0.00 0.00 1.78
4102 4258 5.193679 GGGCCAAAGAAAGTGTAGATATGT 58.806 41.667 4.39 0.00 0.00 2.29
4103 4259 5.652452 GGGCCAAAGAAAGTGTAGATATGTT 59.348 40.000 4.39 0.00 0.00 2.71
4104 4260 6.183360 GGGCCAAAGAAAGTGTAGATATGTTC 60.183 42.308 4.39 0.00 0.00 3.18
4105 4261 6.599638 GGCCAAAGAAAGTGTAGATATGTTCT 59.400 38.462 0.00 0.00 38.57 3.01
4106 4262 7.121315 GGCCAAAGAAAGTGTAGATATGTTCTT 59.879 37.037 0.00 0.00 37.01 2.52
4107 4263 7.965107 GCCAAAGAAAGTGTAGATATGTTCTTG 59.035 37.037 0.00 0.00 35.92 3.02
4108 4264 8.454106 CCAAAGAAAGTGTAGATATGTTCTTGG 58.546 37.037 0.00 0.00 35.92 3.61
4109 4265 9.219603 CAAAGAAAGTGTAGATATGTTCTTGGA 57.780 33.333 0.00 0.00 35.92 3.53
4110 4266 9.793259 AAAGAAAGTGTAGATATGTTCTTGGAA 57.207 29.630 0.00 0.00 35.92 3.53
4111 4267 9.965902 AAGAAAGTGTAGATATGTTCTTGGAAT 57.034 29.630 0.00 0.00 34.81 3.01
4112 4268 9.965902 AGAAAGTGTAGATATGTTCTTGGAATT 57.034 29.630 0.00 0.00 35.79 2.17
4221 4378 5.138125 TGAAATGCTGAGGAATTTTGGTC 57.862 39.130 0.00 0.00 31.25 4.02
4290 4460 8.830915 AATGGTTTATTATGTGGGTATGTCAA 57.169 30.769 0.00 0.00 0.00 3.18
4338 4508 5.696270 GCTTTTAAAACCTTGACTTGATGGG 59.304 40.000 0.00 0.00 0.00 4.00
4351 4521 6.493166 TGACTTGATGGGAAATGGTAGAAAT 58.507 36.000 0.00 0.00 0.00 2.17
4372 4542 8.495949 AGAAATGTATTCTCGTGTGTTGTTAAG 58.504 33.333 0.00 0.00 0.00 1.85
4496 4666 7.454260 CCATTATGGTAAAGAGGCTTATTCC 57.546 40.000 2.48 0.00 31.35 3.01
4627 4801 3.196469 ACATATATGTGGGATCTCCTGCG 59.804 47.826 17.60 0.00 40.03 5.18
4630 4804 3.866582 GTGGGATCTCCTGCGGGG 61.867 72.222 12.87 2.35 36.20 5.73
4658 4839 7.986320 ACCAGAGATGATCTTTAAGTCTTCATG 59.014 37.037 0.00 0.00 35.47 3.07
4686 4867 3.228453 CTTGGCCTTGGCTCATATGAAT 58.772 45.455 11.71 0.00 0.00 2.57
4707 4888 6.013379 TGAATGGAACTGTTATCTCCTGTTCT 60.013 38.462 0.00 0.00 39.39 3.01
4708 4889 5.825593 TGGAACTGTTATCTCCTGTTCTT 57.174 39.130 0.00 0.00 39.39 2.52
4728 4913 3.107402 TCTGTCCTGGTAAGCTGAGAT 57.893 47.619 0.00 0.00 0.00 2.75
4747 4932 7.418337 TGAGATGTAACCAAATCTGTAGCTA 57.582 36.000 0.00 0.00 33.26 3.32
4754 4939 8.046708 TGTAACCAAATCTGTAGCTAATGTGAT 58.953 33.333 0.00 0.00 0.00 3.06
4758 4943 8.806146 ACCAAATCTGTAGCTAATGTGATTTTT 58.194 29.630 15.59 8.22 33.56 1.94
4838 5023 2.297129 GGCCTCCAGAAGCTCCAGT 61.297 63.158 0.00 0.00 0.00 4.00
4847 5032 1.209019 AGAAGCTCCAGTGCATAGTGG 59.791 52.381 6.41 6.41 46.90 4.00
4874 5059 2.552802 AGCATGCTGAACTGCTGAC 58.447 52.632 21.98 0.00 46.55 3.51
4880 5065 1.875514 TGCTGAACTGCTGACAATGTC 59.124 47.619 6.41 6.41 0.00 3.06
4881 5066 1.875514 GCTGAACTGCTGACAATGTCA 59.124 47.619 15.88 15.88 40.50 3.58
4882 5067 2.291465 GCTGAACTGCTGACAATGTCAA 59.709 45.455 17.41 2.53 42.26 3.18
4883 5068 3.608707 GCTGAACTGCTGACAATGTCAAG 60.609 47.826 17.41 14.51 42.26 3.02
4884 5069 3.807553 TGAACTGCTGACAATGTCAAGA 58.192 40.909 17.41 5.75 42.26 3.02
4885 5070 3.811497 TGAACTGCTGACAATGTCAAGAG 59.189 43.478 17.41 16.43 42.26 2.85
4886 5071 3.758755 ACTGCTGACAATGTCAAGAGA 57.241 42.857 21.34 5.94 42.26 3.10
4887 5072 3.661944 ACTGCTGACAATGTCAAGAGAG 58.338 45.455 21.34 14.80 42.26 3.20
4888 5073 3.001414 CTGCTGACAATGTCAAGAGAGG 58.999 50.000 17.41 5.67 42.26 3.69
4889 5074 2.369860 TGCTGACAATGTCAAGAGAGGT 59.630 45.455 17.41 0.00 42.26 3.85
4890 5075 2.999355 GCTGACAATGTCAAGAGAGGTC 59.001 50.000 17.41 0.00 42.26 3.85
4891 5076 3.555795 GCTGACAATGTCAAGAGAGGTCA 60.556 47.826 17.41 0.00 42.26 4.02
4892 5077 4.244066 CTGACAATGTCAAGAGAGGTCAG 58.756 47.826 17.41 13.49 42.26 3.51
4893 5078 3.007290 TGACAATGTCAAGAGAGGTCAGG 59.993 47.826 14.37 0.00 39.78 3.86
4894 5079 2.304180 ACAATGTCAAGAGAGGTCAGGG 59.696 50.000 0.00 0.00 0.00 4.45
4895 5080 2.304180 CAATGTCAAGAGAGGTCAGGGT 59.696 50.000 0.00 0.00 0.00 4.34
4896 5081 2.992847 TGTCAAGAGAGGTCAGGGTA 57.007 50.000 0.00 0.00 0.00 3.69
4897 5082 2.808919 TGTCAAGAGAGGTCAGGGTAG 58.191 52.381 0.00 0.00 0.00 3.18
4898 5083 2.378886 TGTCAAGAGAGGTCAGGGTAGA 59.621 50.000 0.00 0.00 0.00 2.59
4899 5084 2.756207 GTCAAGAGAGGTCAGGGTAGAC 59.244 54.545 0.00 0.00 37.80 2.59
4907 5092 2.365408 GTCAGGGTAGACCGAACTTG 57.635 55.000 0.00 0.00 46.96 3.16
4908 5093 1.891150 GTCAGGGTAGACCGAACTTGA 59.109 52.381 0.00 0.00 46.96 3.02
4909 5094 1.891150 TCAGGGTAGACCGAACTTGAC 59.109 52.381 0.00 0.00 46.96 3.18
4910 5095 0.886563 AGGGTAGACCGAACTTGACG 59.113 55.000 0.00 0.00 46.96 4.35
4911 5096 0.600057 GGGTAGACCGAACTTGACGT 59.400 55.000 0.00 0.00 36.71 4.34
4912 5097 1.668047 GGGTAGACCGAACTTGACGTG 60.668 57.143 0.00 0.00 36.71 4.49
4913 5098 1.668047 GGTAGACCGAACTTGACGTGG 60.668 57.143 0.00 0.00 0.00 4.94
4914 5099 0.599558 TAGACCGAACTTGACGTGGG 59.400 55.000 0.00 0.00 0.00 4.61
4915 5100 1.111116 AGACCGAACTTGACGTGGGA 61.111 55.000 0.00 0.00 0.00 4.37
4916 5101 0.666577 GACCGAACTTGACGTGGGAG 60.667 60.000 0.00 0.00 0.00 4.30
4917 5102 1.374252 CCGAACTTGACGTGGGAGG 60.374 63.158 0.00 0.00 0.00 4.30
4918 5103 1.663739 CGAACTTGACGTGGGAGGA 59.336 57.895 0.00 0.00 0.00 3.71
4919 5104 0.388649 CGAACTTGACGTGGGAGGAG 60.389 60.000 0.00 0.00 0.00 3.69
4920 5105 0.680061 GAACTTGACGTGGGAGGAGT 59.320 55.000 0.00 0.00 0.00 3.85
4921 5106 0.680061 AACTTGACGTGGGAGGAGTC 59.320 55.000 0.00 0.00 35.61 3.36
4922 5107 0.178958 ACTTGACGTGGGAGGAGTCT 60.179 55.000 0.00 0.00 36.01 3.24
4923 5108 0.244994 CTTGACGTGGGAGGAGTCTG 59.755 60.000 0.00 0.00 36.01 3.51
4924 5109 0.469331 TTGACGTGGGAGGAGTCTGT 60.469 55.000 0.00 0.00 36.01 3.41
4925 5110 0.402887 TGACGTGGGAGGAGTCTGTA 59.597 55.000 0.00 0.00 36.01 2.74
4926 5111 1.202964 TGACGTGGGAGGAGTCTGTAA 60.203 52.381 0.00 0.00 36.01 2.41
4927 5112 1.891150 GACGTGGGAGGAGTCTGTAAA 59.109 52.381 0.00 0.00 32.58 2.01
4928 5113 1.893801 ACGTGGGAGGAGTCTGTAAAG 59.106 52.381 0.00 0.00 0.00 1.85
4929 5114 2.168496 CGTGGGAGGAGTCTGTAAAGA 58.832 52.381 0.00 0.00 0.00 2.52
4930 5115 2.164624 CGTGGGAGGAGTCTGTAAAGAG 59.835 54.545 0.00 0.00 0.00 2.85
4931 5116 3.432378 GTGGGAGGAGTCTGTAAAGAGA 58.568 50.000 0.00 0.00 0.00 3.10
4932 5117 3.445805 GTGGGAGGAGTCTGTAAAGAGAG 59.554 52.174 0.00 0.00 0.00 3.20
4933 5118 3.333980 TGGGAGGAGTCTGTAAAGAGAGA 59.666 47.826 0.00 0.00 0.00 3.10
4934 5119 4.017037 TGGGAGGAGTCTGTAAAGAGAGAT 60.017 45.833 0.00 0.00 0.00 2.75
4935 5120 4.583073 GGGAGGAGTCTGTAAAGAGAGATC 59.417 50.000 0.00 0.00 0.00 2.75
4936 5121 4.583073 GGAGGAGTCTGTAAAGAGAGATCC 59.417 50.000 0.00 0.00 0.00 3.36
4937 5122 4.204012 AGGAGTCTGTAAAGAGAGATCCG 58.796 47.826 0.00 0.00 32.54 4.18
4938 5123 4.080243 AGGAGTCTGTAAAGAGAGATCCGA 60.080 45.833 0.00 0.00 32.54 4.55
4939 5124 4.641094 GGAGTCTGTAAAGAGAGATCCGAA 59.359 45.833 0.00 0.00 0.00 4.30
4940 5125 5.220970 GGAGTCTGTAAAGAGAGATCCGAAG 60.221 48.000 0.00 0.00 0.00 3.79
4954 5139 2.200052 CGAAGGACTGGAGTACCCC 58.800 63.158 0.00 0.00 34.81 4.95
4955 5140 0.324460 CGAAGGACTGGAGTACCCCT 60.324 60.000 0.00 0.00 34.81 4.79
4956 5141 1.196012 GAAGGACTGGAGTACCCCTG 58.804 60.000 0.00 0.00 34.81 4.45
4957 5142 0.492276 AAGGACTGGAGTACCCCTGT 59.508 55.000 5.61 5.61 40.45 4.00
4958 5143 0.492276 AGGACTGGAGTACCCCTGTT 59.508 55.000 7.38 0.00 38.30 3.16
4959 5144 0.903236 GGACTGGAGTACCCCTGTTC 59.097 60.000 7.38 1.65 38.30 3.18
4960 5145 1.640917 GACTGGAGTACCCCTGTTCA 58.359 55.000 7.38 0.00 38.30 3.18
4961 5146 1.550976 GACTGGAGTACCCCTGTTCAG 59.449 57.143 7.38 0.00 38.30 3.02
4962 5147 0.905357 CTGGAGTACCCCTGTTCAGG 59.095 60.000 11.52 11.52 34.81 3.86
4963 5148 0.490017 TGGAGTACCCCTGTTCAGGA 59.510 55.000 19.12 0.00 34.81 3.86
4964 5149 1.080498 TGGAGTACCCCTGTTCAGGAT 59.920 52.381 19.12 9.91 34.81 3.24
4965 5150 1.763545 GGAGTACCCCTGTTCAGGATC 59.236 57.143 19.12 9.09 0.00 3.36
4966 5151 1.763545 GAGTACCCCTGTTCAGGATCC 59.236 57.143 19.12 2.48 0.00 3.36
4967 5152 1.366435 AGTACCCCTGTTCAGGATCCT 59.634 52.381 19.12 9.02 0.00 3.24
4968 5153 1.486726 GTACCCCTGTTCAGGATCCTG 59.513 57.143 32.60 32.60 44.86 3.86
4969 5154 0.178861 ACCCCTGTTCAGGATCCTGT 60.179 55.000 35.34 15.51 43.96 4.00
4970 5155 0.543749 CCCCTGTTCAGGATCCTGTC 59.456 60.000 35.34 28.36 43.96 3.51
4981 5166 3.268023 GGATCCTGTCCTGGTAAGTTG 57.732 52.381 3.84 0.00 44.16 3.16
4982 5167 2.838202 GGATCCTGTCCTGGTAAGTTGA 59.162 50.000 3.84 0.00 44.16 3.18
4983 5168 3.118592 GGATCCTGTCCTGGTAAGTTGAG 60.119 52.174 3.84 0.00 44.16 3.02
4984 5169 3.254093 TCCTGTCCTGGTAAGTTGAGA 57.746 47.619 0.00 0.00 0.00 3.27
4985 5170 3.791320 TCCTGTCCTGGTAAGTTGAGAT 58.209 45.455 0.00 0.00 0.00 2.75
4986 5171 3.515502 TCCTGTCCTGGTAAGTTGAGATG 59.484 47.826 0.00 0.00 0.00 2.90
4987 5172 3.261897 CCTGTCCTGGTAAGTTGAGATGT 59.738 47.826 0.00 0.00 0.00 3.06
4988 5173 4.466370 CCTGTCCTGGTAAGTTGAGATGTA 59.534 45.833 0.00 0.00 0.00 2.29
4989 5174 5.046591 CCTGTCCTGGTAAGTTGAGATGTAA 60.047 44.000 0.00 0.00 0.00 2.41
4990 5175 6.428083 TGTCCTGGTAAGTTGAGATGTAAA 57.572 37.500 0.00 0.00 0.00 2.01
4991 5176 6.228258 TGTCCTGGTAAGTTGAGATGTAAAC 58.772 40.000 0.00 0.00 0.00 2.01
4992 5177 6.183361 TGTCCTGGTAAGTTGAGATGTAAACA 60.183 38.462 0.00 0.00 0.00 2.83
4993 5178 6.708949 GTCCTGGTAAGTTGAGATGTAAACAA 59.291 38.462 0.00 0.00 0.00 2.83
4994 5179 7.227910 GTCCTGGTAAGTTGAGATGTAAACAAA 59.772 37.037 0.00 0.00 0.00 2.83
4995 5180 7.942341 TCCTGGTAAGTTGAGATGTAAACAAAT 59.058 33.333 0.00 0.00 0.00 2.32
4996 5181 8.237267 CCTGGTAAGTTGAGATGTAAACAAATC 58.763 37.037 0.00 0.00 0.00 2.17
4997 5182 8.918202 TGGTAAGTTGAGATGTAAACAAATCT 57.082 30.769 0.00 0.00 35.84 2.40
4998 5183 8.783093 TGGTAAGTTGAGATGTAAACAAATCTG 58.217 33.333 0.00 0.00 33.26 2.90
4999 5184 8.784043 GGTAAGTTGAGATGTAAACAAATCTGT 58.216 33.333 0.00 0.00 37.39 3.41
5000 5185 9.599322 GTAAGTTGAGATGTAAACAAATCTGTG 57.401 33.333 0.00 0.00 35.37 3.66
5001 5186 7.206981 AGTTGAGATGTAAACAAATCTGTGG 57.793 36.000 0.00 0.00 35.37 4.17
5002 5187 5.627499 TGAGATGTAAACAAATCTGTGGC 57.373 39.130 0.00 0.00 35.37 5.01
5003 5188 5.316167 TGAGATGTAAACAAATCTGTGGCT 58.684 37.500 0.00 0.00 35.37 4.75
5004 5189 6.472016 TGAGATGTAAACAAATCTGTGGCTA 58.528 36.000 0.00 0.00 35.37 3.93
5005 5190 6.595326 TGAGATGTAAACAAATCTGTGGCTAG 59.405 38.462 0.00 0.00 35.37 3.42
5006 5191 6.476378 AGATGTAAACAAATCTGTGGCTAGT 58.524 36.000 0.00 0.00 35.37 2.57
5007 5192 5.940192 TGTAAACAAATCTGTGGCTAGTG 57.060 39.130 0.00 0.00 35.37 2.74
5008 5193 5.373222 TGTAAACAAATCTGTGGCTAGTGT 58.627 37.500 0.00 0.00 35.37 3.55
5009 5194 4.836125 AAACAAATCTGTGGCTAGTGTG 57.164 40.909 0.00 0.00 35.37 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
414 419 5.410132 CAGGTACGATCGAGTCATATCTCTT 59.590 44.000 24.34 0.00 32.83 2.85
424 429 1.134560 GCTTTCCAGGTACGATCGAGT 59.865 52.381 24.34 2.14 0.00 4.18
481 490 1.411501 GGCCCACCCACATTACATCAT 60.412 52.381 0.00 0.00 0.00 2.45
558 567 1.604604 TGCTGCCACCTCAAAAGTAC 58.395 50.000 0.00 0.00 0.00 2.73
559 568 2.040278 AGATGCTGCCACCTCAAAAGTA 59.960 45.455 0.00 0.00 0.00 2.24
560 569 1.202976 AGATGCTGCCACCTCAAAAGT 60.203 47.619 0.00 0.00 0.00 2.66
569 578 0.029834 CGCCAATAAGATGCTGCCAC 59.970 55.000 0.00 0.00 0.00 5.01
580 589 0.472471 GATGGTCCTCCCGCCAATAA 59.528 55.000 0.00 0.00 38.38 1.40
624 633 2.294078 CCCTCCTCCGCAAACCTCT 61.294 63.158 0.00 0.00 0.00 3.69
647 656 0.813184 GGGTTCATGAGCCACACATG 59.187 55.000 27.45 0.00 45.52 3.21
648 657 3.271250 GGGTTCATGAGCCACACAT 57.729 52.632 27.45 0.00 45.52 3.21
649 658 4.819783 GGGTTCATGAGCCACACA 57.180 55.556 27.45 0.00 45.52 3.72
653 662 5.356719 GGGATTATGGGGTTCATGAGCCA 62.357 52.174 27.45 10.73 46.09 4.75
654 663 2.519013 GGATTATGGGGTTCATGAGCC 58.481 52.381 19.69 19.69 40.01 4.70
655 664 2.108952 AGGGATTATGGGGTTCATGAGC 59.891 50.000 0.04 0.04 37.30 4.26
656 665 3.654806 AGAGGGATTATGGGGTTCATGAG 59.345 47.826 0.00 0.00 37.30 2.90
657 666 3.680169 AGAGGGATTATGGGGTTCATGA 58.320 45.455 0.00 0.00 37.30 3.07
658 667 5.786121 ATAGAGGGATTATGGGGTTCATG 57.214 43.478 0.00 0.00 37.30 3.07
659 668 8.482378 AATTATAGAGGGATTATGGGGTTCAT 57.518 34.615 0.00 0.00 39.78 2.57
660 669 7.036863 GGAATTATAGAGGGATTATGGGGTTCA 60.037 40.741 0.00 0.00 0.00 3.18
661 670 7.184753 AGGAATTATAGAGGGATTATGGGGTTC 59.815 40.741 0.00 0.00 0.00 3.62
662 671 7.036571 CAGGAATTATAGAGGGATTATGGGGTT 60.037 40.741 0.00 0.00 0.00 4.11
663 672 6.448387 CAGGAATTATAGAGGGATTATGGGGT 59.552 42.308 0.00 0.00 0.00 4.95
664 673 6.448387 ACAGGAATTATAGAGGGATTATGGGG 59.552 42.308 0.00 0.00 0.00 4.96
665 674 7.516450 ACAGGAATTATAGAGGGATTATGGG 57.484 40.000 0.00 0.00 0.00 4.00
666 675 8.605947 TGAACAGGAATTATAGAGGGATTATGG 58.394 37.037 0.00 0.00 0.00 2.74
669 678 8.826765 GGATGAACAGGAATTATAGAGGGATTA 58.173 37.037 0.00 0.00 0.00 1.75
670 679 7.295672 TGGATGAACAGGAATTATAGAGGGATT 59.704 37.037 0.00 0.00 0.00 3.01
671 680 6.794493 TGGATGAACAGGAATTATAGAGGGAT 59.206 38.462 0.00 0.00 0.00 3.85
672 681 6.150332 TGGATGAACAGGAATTATAGAGGGA 58.850 40.000 0.00 0.00 0.00 4.20
673 682 6.439636 TGGATGAACAGGAATTATAGAGGG 57.560 41.667 0.00 0.00 0.00 4.30
674 683 7.512992 AGTTGGATGAACAGGAATTATAGAGG 58.487 38.462 0.00 0.00 36.98 3.69
675 684 8.428063 AGAGTTGGATGAACAGGAATTATAGAG 58.572 37.037 0.00 0.00 36.98 2.43
676 685 8.324191 AGAGTTGGATGAACAGGAATTATAGA 57.676 34.615 0.00 0.00 36.98 1.98
677 686 8.834465 CAAGAGTTGGATGAACAGGAATTATAG 58.166 37.037 0.00 0.00 36.98 1.31
678 687 8.548025 TCAAGAGTTGGATGAACAGGAATTATA 58.452 33.333 0.00 0.00 36.98 0.98
679 688 7.405292 TCAAGAGTTGGATGAACAGGAATTAT 58.595 34.615 0.00 0.00 36.98 1.28
680 689 6.778821 TCAAGAGTTGGATGAACAGGAATTA 58.221 36.000 0.00 0.00 36.98 1.40
681 690 5.634118 TCAAGAGTTGGATGAACAGGAATT 58.366 37.500 0.00 0.00 36.98 2.17
682 691 5.246981 TCAAGAGTTGGATGAACAGGAAT 57.753 39.130 0.00 0.00 36.98 3.01
683 692 4.705110 TCAAGAGTTGGATGAACAGGAA 57.295 40.909 0.00 0.00 36.98 3.36
684 693 4.286808 TGATCAAGAGTTGGATGAACAGGA 59.713 41.667 0.00 0.00 36.98 3.86
685 694 4.582869 TGATCAAGAGTTGGATGAACAGG 58.417 43.478 0.00 0.00 36.98 4.00
686 695 6.754702 ATTGATCAAGAGTTGGATGAACAG 57.245 37.500 14.54 0.00 36.98 3.16
687 696 8.812513 ATTATTGATCAAGAGTTGGATGAACA 57.187 30.769 14.54 0.00 36.98 3.18
693 702 9.958180 TCACTTTATTATTGATCAAGAGTTGGA 57.042 29.630 14.54 0.00 0.00 3.53
697 706 9.453572 TGCTTCACTTTATTATTGATCAAGAGT 57.546 29.630 14.54 8.78 0.00 3.24
706 715 9.301153 GGGTTAACATGCTTCACTTTATTATTG 57.699 33.333 8.10 0.00 0.00 1.90
707 716 9.255029 AGGGTTAACATGCTTCACTTTATTATT 57.745 29.630 8.10 0.00 0.00 1.40
708 717 8.823220 AGGGTTAACATGCTTCACTTTATTAT 57.177 30.769 8.10 0.00 0.00 1.28
709 718 9.742144 TTAGGGTTAACATGCTTCACTTTATTA 57.258 29.630 8.10 0.00 0.00 0.98
710 719 8.644374 TTAGGGTTAACATGCTTCACTTTATT 57.356 30.769 8.10 0.00 0.00 1.40
711 720 8.644374 TTTAGGGTTAACATGCTTCACTTTAT 57.356 30.769 8.10 0.00 0.00 1.40
712 721 8.466617 TTTTAGGGTTAACATGCTTCACTTTA 57.533 30.769 8.10 0.00 0.00 1.85
713 722 6.969993 TTTAGGGTTAACATGCTTCACTTT 57.030 33.333 8.10 0.00 0.00 2.66
714 723 6.969993 TTTTAGGGTTAACATGCTTCACTT 57.030 33.333 8.10 0.00 0.00 3.16
715 724 6.969993 TTTTTAGGGTTAACATGCTTCACT 57.030 33.333 8.10 0.00 0.00 3.41
736 745 1.395262 CGTTGGCGCCTTTTTGTTTTT 59.605 42.857 29.70 0.00 0.00 1.94
737 746 1.003108 CGTTGGCGCCTTTTTGTTTT 58.997 45.000 29.70 0.00 0.00 2.43
738 747 0.173708 TCGTTGGCGCCTTTTTGTTT 59.826 45.000 29.70 0.00 38.14 2.83
739 748 0.248866 CTCGTTGGCGCCTTTTTGTT 60.249 50.000 29.70 0.00 38.14 2.83
740 749 1.358759 CTCGTTGGCGCCTTTTTGT 59.641 52.632 29.70 0.00 38.14 2.83
741 750 1.371635 CCTCGTTGGCGCCTTTTTG 60.372 57.895 29.70 14.60 38.14 2.44
742 751 1.515521 CTCCTCGTTGGCGCCTTTTT 61.516 55.000 29.70 0.00 38.14 1.94
743 752 1.966451 CTCCTCGTTGGCGCCTTTT 60.966 57.895 29.70 0.00 38.14 2.27
744 753 2.358737 CTCCTCGTTGGCGCCTTT 60.359 61.111 29.70 0.00 38.14 3.11
745 754 4.394712 CCTCCTCGTTGGCGCCTT 62.395 66.667 29.70 0.00 38.14 4.35
748 757 4.373116 TGTCCTCCTCGTTGGCGC 62.373 66.667 0.00 0.00 38.14 6.53
749 758 2.432628 GTGTCCTCCTCGTTGGCG 60.433 66.667 0.00 0.00 39.92 5.69
750 759 2.047179 GGTGTCCTCCTCGTTGGC 60.047 66.667 0.00 0.00 35.26 4.52
751 760 2.261671 CGGTGTCCTCCTCGTTGG 59.738 66.667 0.00 0.00 37.10 3.77
752 761 1.372997 CACGGTGTCCTCCTCGTTG 60.373 63.158 0.00 0.00 33.31 4.10
753 762 1.803366 GACACGGTGTCCTCCTCGTT 61.803 60.000 26.86 0.00 41.37 3.85
754 763 2.203451 ACACGGTGTCCTCCTCGT 60.203 61.111 8.21 0.00 36.19 4.18
755 764 2.265904 TGACACGGTGTCCTCCTCG 61.266 63.158 31.93 0.00 46.40 4.63
756 765 1.289380 GTGACACGGTGTCCTCCTC 59.711 63.158 31.93 16.48 46.40 3.71
757 766 1.456892 TGTGACACGGTGTCCTCCT 60.457 57.895 31.93 2.54 46.40 3.69
758 767 1.006102 CTGTGACACGGTGTCCTCC 60.006 63.158 31.93 21.72 46.40 4.30
759 768 1.664965 GCTGTGACACGGTGTCCTC 60.665 63.158 31.93 25.06 46.40 3.71
760 769 2.421739 GCTGTGACACGGTGTCCT 59.578 61.111 31.93 4.08 46.40 3.85
761 770 2.665185 GGCTGTGACACGGTGTCC 60.665 66.667 31.93 24.11 46.40 4.02
763 772 4.602259 CGGGCTGTGACACGGTGT 62.602 66.667 14.66 14.66 0.00 4.16
764 773 4.293648 TCGGGCTGTGACACGGTG 62.294 66.667 15.74 6.58 0.00 4.94
765 774 4.295119 GTCGGGCTGTGACACGGT 62.295 66.667 15.74 0.00 36.37 4.83
766 775 3.916392 GAGTCGGGCTGTGACACGG 62.916 68.421 10.24 10.24 38.83 4.94
843 857 2.666098 CCTCCCGTGGTAGTTGGGG 61.666 68.421 0.00 0.00 43.50 4.96
926 942 4.367023 GTAGGTGACCACGGCGCA 62.367 66.667 10.83 0.00 0.00 6.09
981 1017 0.623723 TTGCTAGCTAGGGTTTGGGG 59.376 55.000 22.10 0.00 0.00 4.96
1407 1464 1.372997 GCGGTCGAGCTTGTTGAGA 60.373 57.895 13.48 0.00 0.00 3.27
1559 1616 4.457496 CATCGTCGGCCTGCTGGT 62.457 66.667 11.69 0.00 35.27 4.00
1575 1632 2.915659 ACGAAGGTGTCCTCGCCA 60.916 61.111 0.00 0.00 45.81 5.69
1596 1653 0.036010 AGACGACATTGCCCTTCTGG 60.036 55.000 0.00 0.00 37.09 3.86
1697 1754 2.584835 TAGCCATTTCACCAGCTTGT 57.415 45.000 0.00 0.00 36.79 3.16
1726 1783 7.827787 TCTTCTTCTCCTTATCCCAGTAGTAT 58.172 38.462 0.00 0.00 0.00 2.12
1738 1795 4.101741 GGCATAGCCTTCTTCTTCTCCTTA 59.898 45.833 0.00 0.00 46.69 2.69
1777 1834 0.249155 CAAATATGGGCCGCTGCTTG 60.249 55.000 0.00 0.00 37.74 4.01
1785 1842 2.771372 ACCAATTCCACAAATATGGGCC 59.229 45.455 0.00 0.00 40.49 5.80
1792 1849 3.555586 GCTTGAGCACCAATTCCACAAAT 60.556 43.478 0.00 0.00 41.59 2.32
1804 1861 3.730761 CACAGCCGCTTGAGCACC 61.731 66.667 3.65 0.00 42.21 5.01
1879 1936 0.250234 TCAGATTGAAGGCCTGGACG 59.750 55.000 5.69 0.00 0.00 4.79
1978 2035 1.212751 CGTCATCACTGTCTCCGCA 59.787 57.895 0.00 0.00 0.00 5.69
2302 2368 2.041153 CACAAACACCTTCTGCCCC 58.959 57.895 0.00 0.00 0.00 5.80
2321 2387 2.608016 CCGGATCATACATCGGTGACAG 60.608 54.545 0.65 0.00 37.92 3.51
2380 2446 1.901833 TCATACAGCTGCTGAACCTCA 59.098 47.619 34.28 12.71 35.18 3.86
2500 2566 2.363680 CCAGCAGTTCCTCGTAGATGAT 59.636 50.000 0.00 0.00 33.89 2.45
2506 2572 2.656069 GGGCCAGCAGTTCCTCGTA 61.656 63.158 4.39 0.00 0.00 3.43
2720 2786 2.010497 GAACCTCTCCCGCAAATTCTC 58.990 52.381 0.00 0.00 0.00 2.87
2816 2882 5.510520 CCTGTGGATCCTTCAAGCTATCTAC 60.511 48.000 14.23 7.25 32.33 2.59
2926 2992 4.708726 AAGCAATTCCTCATTTTCCTCG 57.291 40.909 0.00 0.00 0.00 4.63
2984 3050 3.285484 GACATTGTGATCCCATTGCTCT 58.715 45.455 0.00 0.00 0.00 4.09
2992 3058 0.179045 CCCGAGGACATTGTGATCCC 60.179 60.000 0.00 0.00 35.38 3.85
2995 3061 2.118679 TCATCCCGAGGACATTGTGAT 58.881 47.619 0.00 0.00 32.98 3.06
3073 3139 2.099431 CACAGAGAGCGCTTCCAGC 61.099 63.158 13.26 0.00 38.02 4.85
3090 3156 1.640428 CTTAACTTCATCCGCTCGCA 58.360 50.000 0.00 0.00 0.00 5.10
3117 3183 2.103263 CCCAGCAGTGTCTTCCTATACC 59.897 54.545 0.00 0.00 0.00 2.73
3139 3205 2.414161 GGCCGAGATTTTGTGCAAGTAC 60.414 50.000 0.00 0.00 0.00 2.73
3175 3241 0.752376 GGAGGAGATTCGGACCGACT 60.752 60.000 18.12 12.08 34.89 4.18
3225 3291 1.231221 TCCGTTTTGGATGGTTGTCG 58.769 50.000 0.00 0.00 43.74 4.35
3270 3336 3.672397 CAGTTTCTCTGAGACATGACACG 59.328 47.826 6.92 0.00 46.27 4.49
3375 3444 4.164796 TGATGATGTTCCTTAGTGCCTCAT 59.835 41.667 0.00 0.00 0.00 2.90
3528 3597 2.125350 CTTCCCTGACTGCCGCTC 60.125 66.667 0.00 0.00 0.00 5.03
3601 3670 5.519808 TCTATAGGAGTGGTCACTTCACAT 58.480 41.667 11.54 6.89 42.66 3.21
3682 3751 6.205658 ACAAGAAAGTTTCTAGTTGCATCTCC 59.794 38.462 18.31 0.00 39.61 3.71
3817 3886 1.512735 AGGGGTCTTGAGGAATAGCC 58.487 55.000 0.00 0.00 0.00 3.93
3952 4022 4.154015 CCATGCTTGACAACTTTATCGTCA 59.846 41.667 0.22 0.00 37.87 4.35
3964 4034 0.310543 GTTTCGTGCCATGCTTGACA 59.689 50.000 0.22 0.00 0.00 3.58
4045 4201 0.310543 GTGCCATGCTTGACGAAACA 59.689 50.000 0.22 0.00 0.00 2.83
4046 4202 0.725784 CGTGCCATGCTTGACGAAAC 60.726 55.000 7.75 0.00 33.64 2.78
4047 4203 0.882484 TCGTGCCATGCTTGACGAAA 60.882 50.000 12.27 0.00 37.86 3.46
4048 4204 0.882484 TTCGTGCCATGCTTGACGAA 60.882 50.000 18.98 18.98 45.72 3.85
4049 4205 0.882484 TTTCGTGCCATGCTTGACGA 60.882 50.000 11.07 11.07 38.97 4.20
4050 4206 0.725784 GTTTCGTGCCATGCTTGACG 60.726 55.000 0.22 4.45 0.00 4.35
4051 4207 0.310543 TGTTTCGTGCCATGCTTGAC 59.689 50.000 0.22 0.00 0.00 3.18
4052 4208 0.592637 CTGTTTCGTGCCATGCTTGA 59.407 50.000 0.22 0.00 0.00 3.02
4053 4209 1.005294 GCTGTTTCGTGCCATGCTTG 61.005 55.000 0.00 0.00 0.00 4.01
4054 4210 1.286880 GCTGTTTCGTGCCATGCTT 59.713 52.632 0.00 0.00 0.00 3.91
4055 4211 2.956987 GCTGTTTCGTGCCATGCT 59.043 55.556 0.00 0.00 0.00 3.79
4061 4217 4.090057 GAGCCGGCTGTTTCGTGC 62.090 66.667 38.41 13.51 0.00 5.34
4062 4218 3.777925 CGAGCCGGCTGTTTCGTG 61.778 66.667 38.41 10.43 0.00 4.35
4075 4231 1.172812 ACACTTTCTTTGGCCCGAGC 61.173 55.000 0.00 0.00 38.76 5.03
4076 4232 2.076863 CTACACTTTCTTTGGCCCGAG 58.923 52.381 0.00 0.00 0.00 4.63
4077 4233 1.695242 TCTACACTTTCTTTGGCCCGA 59.305 47.619 0.00 0.00 0.00 5.14
4078 4234 2.178912 TCTACACTTTCTTTGGCCCG 57.821 50.000 0.00 0.00 0.00 6.13
4079 4235 5.193679 ACATATCTACACTTTCTTTGGCCC 58.806 41.667 0.00 0.00 0.00 5.80
4080 4236 6.599638 AGAACATATCTACACTTTCTTTGGCC 59.400 38.462 0.00 0.00 36.32 5.36
4081 4237 7.617041 AGAACATATCTACACTTTCTTTGGC 57.383 36.000 0.00 0.00 36.32 4.52
4082 4238 8.454106 CCAAGAACATATCTACACTTTCTTTGG 58.546 37.037 0.00 0.00 37.42 3.28
4083 4239 9.219603 TCCAAGAACATATCTACACTTTCTTTG 57.780 33.333 0.00 0.00 37.42 2.77
4084 4240 9.793259 TTCCAAGAACATATCTACACTTTCTTT 57.207 29.630 0.00 0.00 37.42 2.52
4085 4241 9.965902 ATTCCAAGAACATATCTACACTTTCTT 57.034 29.630 0.00 0.00 37.42 2.52
4086 4242 9.965902 AATTCCAAGAACATATCTACACTTTCT 57.034 29.630 0.00 0.00 37.42 2.52
4290 4460 6.514048 GCAGAATGTTGTGAAACTTTCTAGCT 60.514 38.462 15.28 0.00 41.97 3.32
4338 4508 8.116753 CACACGAGAATACATTTCTACCATTTC 58.883 37.037 0.00 0.00 0.00 2.17
4351 4521 4.449743 GGCTTAACAACACACGAGAATACA 59.550 41.667 0.00 0.00 0.00 2.29
4372 4542 3.995048 AGCGAGTTCTACTAACTTTTGGC 59.005 43.478 0.00 0.00 0.00 4.52
4496 4666 3.885358 TGACGTAACTATGCTATGCTCG 58.115 45.455 0.00 0.00 0.00 5.03
4627 4801 3.941704 AAAGATCATCTCTGGTTCCCC 57.058 47.619 0.00 0.00 33.29 4.81
4630 4804 8.037758 TGAAGACTTAAAGATCATCTCTGGTTC 58.962 37.037 0.00 0.00 33.29 3.62
4636 4810 7.440856 GTCCCATGAAGACTTAAAGATCATCTC 59.559 40.741 0.00 0.00 0.00 2.75
4638 4812 7.011857 GTGTCCCATGAAGACTTAAAGATCATC 59.988 40.741 14.51 0.00 35.21 2.92
4642 4816 5.251700 AGGTGTCCCATGAAGACTTAAAGAT 59.748 40.000 14.51 0.00 35.21 2.40
4643 4817 4.597507 AGGTGTCCCATGAAGACTTAAAGA 59.402 41.667 14.51 0.00 35.21 2.52
4644 4818 4.911390 AGGTGTCCCATGAAGACTTAAAG 58.089 43.478 14.51 0.00 35.21 1.85
4645 4819 4.993705 AGGTGTCCCATGAAGACTTAAA 57.006 40.909 14.51 0.00 35.21 1.52
4646 4820 4.506625 CCAAGGTGTCCCATGAAGACTTAA 60.507 45.833 14.51 0.00 35.21 1.85
4658 4839 2.283173 CCAAGGCCAAGGTGTCCC 60.283 66.667 5.01 0.00 0.00 4.46
4686 4867 5.544176 AGAAGAACAGGAGATAACAGTTCCA 59.456 40.000 0.00 0.00 39.39 3.53
4707 4888 2.889512 TCTCAGCTTACCAGGACAGAA 58.110 47.619 0.00 0.00 0.00 3.02
4708 4889 2.604912 TCTCAGCTTACCAGGACAGA 57.395 50.000 0.00 0.00 0.00 3.41
4728 4913 7.390823 TCACATTAGCTACAGATTTGGTTACA 58.609 34.615 0.00 0.00 0.00 2.41
4777 4962 7.516627 CGAAACAACCATCTTCACAAAAATTCC 60.517 37.037 0.00 0.00 0.00 3.01
4838 5023 1.742411 GCTTTAGCCGTCCACTATGCA 60.742 52.381 0.00 0.00 34.31 3.96
4847 5032 1.086696 TTCAGCATGCTTTAGCCGTC 58.913 50.000 19.98 0.00 41.18 4.79
4874 5059 2.304180 ACCCTGACCTCTCTTGACATTG 59.696 50.000 0.00 0.00 0.00 2.82
4888 5073 1.891150 TCAAGTTCGGTCTACCCTGAC 59.109 52.381 0.00 0.00 36.31 3.51
4889 5074 1.891150 GTCAAGTTCGGTCTACCCTGA 59.109 52.381 0.00 0.00 0.00 3.86
4890 5075 1.402456 CGTCAAGTTCGGTCTACCCTG 60.402 57.143 0.00 0.00 0.00 4.45
4891 5076 0.886563 CGTCAAGTTCGGTCTACCCT 59.113 55.000 0.00 0.00 0.00 4.34
4892 5077 0.600057 ACGTCAAGTTCGGTCTACCC 59.400 55.000 0.00 0.00 0.00 3.69
4893 5078 1.668047 CCACGTCAAGTTCGGTCTACC 60.668 57.143 0.00 0.00 0.00 3.18
4894 5079 1.668047 CCCACGTCAAGTTCGGTCTAC 60.668 57.143 0.00 0.00 0.00 2.59
4895 5080 0.599558 CCCACGTCAAGTTCGGTCTA 59.400 55.000 0.00 0.00 0.00 2.59
4896 5081 1.111116 TCCCACGTCAAGTTCGGTCT 61.111 55.000 0.00 0.00 0.00 3.85
4897 5082 0.666577 CTCCCACGTCAAGTTCGGTC 60.667 60.000 0.00 0.00 0.00 4.79
4898 5083 1.366366 CTCCCACGTCAAGTTCGGT 59.634 57.895 0.00 0.00 0.00 4.69
4899 5084 1.374252 CCTCCCACGTCAAGTTCGG 60.374 63.158 0.00 0.00 0.00 4.30
4900 5085 0.388649 CTCCTCCCACGTCAAGTTCG 60.389 60.000 0.00 0.00 0.00 3.95
4901 5086 0.680061 ACTCCTCCCACGTCAAGTTC 59.320 55.000 0.00 0.00 0.00 3.01
4902 5087 0.680061 GACTCCTCCCACGTCAAGTT 59.320 55.000 0.00 0.00 0.00 2.66
4903 5088 0.178958 AGACTCCTCCCACGTCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
4904 5089 0.244994 CAGACTCCTCCCACGTCAAG 59.755 60.000 0.00 0.00 0.00 3.02
4905 5090 0.469331 ACAGACTCCTCCCACGTCAA 60.469 55.000 0.00 0.00 0.00 3.18
4906 5091 0.402887 TACAGACTCCTCCCACGTCA 59.597 55.000 0.00 0.00 0.00 4.35
4907 5092 1.542492 TTACAGACTCCTCCCACGTC 58.458 55.000 0.00 0.00 0.00 4.34
4908 5093 1.893801 CTTTACAGACTCCTCCCACGT 59.106 52.381 0.00 0.00 0.00 4.49
4909 5094 2.164624 CTCTTTACAGACTCCTCCCACG 59.835 54.545 0.00 0.00 0.00 4.94
4910 5095 3.432378 TCTCTTTACAGACTCCTCCCAC 58.568 50.000 0.00 0.00 0.00 4.61
4911 5096 3.333980 TCTCTCTTTACAGACTCCTCCCA 59.666 47.826 0.00 0.00 0.00 4.37
4912 5097 3.970842 TCTCTCTTTACAGACTCCTCCC 58.029 50.000 0.00 0.00 0.00 4.30
4913 5098 4.583073 GGATCTCTCTTTACAGACTCCTCC 59.417 50.000 0.00 0.00 0.00 4.30
4914 5099 4.274950 CGGATCTCTCTTTACAGACTCCTC 59.725 50.000 0.00 0.00 0.00 3.71
4915 5100 4.080243 TCGGATCTCTCTTTACAGACTCCT 60.080 45.833 0.00 0.00 0.00 3.69
4916 5101 4.200874 TCGGATCTCTCTTTACAGACTCC 58.799 47.826 0.00 0.00 0.00 3.85
4917 5102 5.220970 CCTTCGGATCTCTCTTTACAGACTC 60.221 48.000 0.00 0.00 0.00 3.36
4918 5103 4.642885 CCTTCGGATCTCTCTTTACAGACT 59.357 45.833 0.00 0.00 0.00 3.24
4919 5104 4.641094 TCCTTCGGATCTCTCTTTACAGAC 59.359 45.833 0.00 0.00 0.00 3.51
4920 5105 4.641094 GTCCTTCGGATCTCTCTTTACAGA 59.359 45.833 0.00 0.00 32.73 3.41
4921 5106 4.642885 AGTCCTTCGGATCTCTCTTTACAG 59.357 45.833 0.00 0.00 32.73 2.74
4922 5107 4.399618 CAGTCCTTCGGATCTCTCTTTACA 59.600 45.833 0.00 0.00 32.73 2.41
4923 5108 4.202070 CCAGTCCTTCGGATCTCTCTTTAC 60.202 50.000 0.00 0.00 32.73 2.01
4924 5109 3.954904 CCAGTCCTTCGGATCTCTCTTTA 59.045 47.826 0.00 0.00 32.73 1.85
4925 5110 2.763448 CCAGTCCTTCGGATCTCTCTTT 59.237 50.000 0.00 0.00 32.73 2.52
4926 5111 2.024846 TCCAGTCCTTCGGATCTCTCTT 60.025 50.000 0.00 0.00 32.73 2.85
4927 5112 1.566703 TCCAGTCCTTCGGATCTCTCT 59.433 52.381 0.00 0.00 32.73 3.10
4928 5113 1.953686 CTCCAGTCCTTCGGATCTCTC 59.046 57.143 0.00 0.00 32.73 3.20
4929 5114 1.286553 ACTCCAGTCCTTCGGATCTCT 59.713 52.381 0.00 0.00 32.73 3.10
4930 5115 1.770294 ACTCCAGTCCTTCGGATCTC 58.230 55.000 0.00 0.00 32.73 2.75
4931 5116 2.657143 GTACTCCAGTCCTTCGGATCT 58.343 52.381 0.00 0.00 32.73 2.75
4932 5117 1.682323 GGTACTCCAGTCCTTCGGATC 59.318 57.143 0.00 0.00 32.73 3.36
4933 5118 1.688627 GGGTACTCCAGTCCTTCGGAT 60.689 57.143 0.00 0.00 32.24 4.18
4934 5119 0.324091 GGGTACTCCAGTCCTTCGGA 60.324 60.000 0.00 0.00 35.00 4.55
4935 5120 1.328430 GGGGTACTCCAGTCCTTCGG 61.328 65.000 6.99 0.00 37.22 4.30
4936 5121 0.324460 AGGGGTACTCCAGTCCTTCG 60.324 60.000 15.95 0.00 37.22 3.79
4937 5122 1.196012 CAGGGGTACTCCAGTCCTTC 58.804 60.000 15.95 0.00 37.22 3.46
4938 5123 0.492276 ACAGGGGTACTCCAGTCCTT 59.508 55.000 15.95 0.00 37.22 3.36
4939 5124 0.492276 AACAGGGGTACTCCAGTCCT 59.508 55.000 15.95 0.00 37.22 3.85
4940 5125 0.903236 GAACAGGGGTACTCCAGTCC 59.097 60.000 15.95 0.00 37.22 3.85
4941 5126 1.550976 CTGAACAGGGGTACTCCAGTC 59.449 57.143 15.95 8.45 37.22 3.51
4942 5127 1.645710 CTGAACAGGGGTACTCCAGT 58.354 55.000 15.95 9.77 37.22 4.00
4943 5128 0.905357 CCTGAACAGGGGTACTCCAG 59.095 60.000 15.95 8.94 44.87 3.86
4944 5129 3.082619 CCTGAACAGGGGTACTCCA 57.917 57.895 15.95 0.00 44.87 3.86
4962 5147 3.769844 TCTCAACTTACCAGGACAGGATC 59.230 47.826 0.00 0.00 0.00 3.36
4963 5148 3.791320 TCTCAACTTACCAGGACAGGAT 58.209 45.455 0.00 0.00 0.00 3.24
4964 5149 3.254093 TCTCAACTTACCAGGACAGGA 57.746 47.619 0.00 0.00 0.00 3.86
4965 5150 3.261897 ACATCTCAACTTACCAGGACAGG 59.738 47.826 0.00 0.00 0.00 4.00
4966 5151 4.543590 ACATCTCAACTTACCAGGACAG 57.456 45.455 0.00 0.00 0.00 3.51
4967 5152 6.183361 TGTTTACATCTCAACTTACCAGGACA 60.183 38.462 0.00 0.00 0.00 4.02
4968 5153 6.228258 TGTTTACATCTCAACTTACCAGGAC 58.772 40.000 0.00 0.00 0.00 3.85
4969 5154 6.428083 TGTTTACATCTCAACTTACCAGGA 57.572 37.500 0.00 0.00 0.00 3.86
4970 5155 7.504924 TTTGTTTACATCTCAACTTACCAGG 57.495 36.000 0.00 0.00 0.00 4.45
4971 5156 9.003658 AGATTTGTTTACATCTCAACTTACCAG 57.996 33.333 0.00 0.00 0.00 4.00
4972 5157 8.783093 CAGATTTGTTTACATCTCAACTTACCA 58.217 33.333 0.00 0.00 0.00 3.25
4973 5158 8.784043 ACAGATTTGTTTACATCTCAACTTACC 58.216 33.333 0.00 0.00 32.28 2.85
4974 5159 9.599322 CACAGATTTGTTTACATCTCAACTTAC 57.401 33.333 0.00 0.00 34.62 2.34
4975 5160 8.783093 CCACAGATTTGTTTACATCTCAACTTA 58.217 33.333 0.00 0.00 34.62 2.24
4976 5161 7.651808 CCACAGATTTGTTTACATCTCAACTT 58.348 34.615 0.00 0.00 34.62 2.66
4977 5162 6.294176 GCCACAGATTTGTTTACATCTCAACT 60.294 38.462 0.00 0.00 34.62 3.16
4978 5163 5.858581 GCCACAGATTTGTTTACATCTCAAC 59.141 40.000 0.00 0.00 34.62 3.18
4979 5164 5.769662 AGCCACAGATTTGTTTACATCTCAA 59.230 36.000 0.00 0.00 34.62 3.02
4980 5165 5.316167 AGCCACAGATTTGTTTACATCTCA 58.684 37.500 0.00 0.00 34.62 3.27
4981 5166 5.886960 AGCCACAGATTTGTTTACATCTC 57.113 39.130 0.00 0.00 34.62 2.75
4982 5167 6.372659 CACTAGCCACAGATTTGTTTACATCT 59.627 38.462 0.00 0.00 34.62 2.90
4983 5168 6.149474 ACACTAGCCACAGATTTGTTTACATC 59.851 38.462 0.00 0.00 34.62 3.06
4984 5169 6.003950 ACACTAGCCACAGATTTGTTTACAT 58.996 36.000 0.00 0.00 34.62 2.29
4985 5170 5.238432 CACACTAGCCACAGATTTGTTTACA 59.762 40.000 0.00 0.00 34.62 2.41
4986 5171 5.689819 CACACTAGCCACAGATTTGTTTAC 58.310 41.667 0.00 0.00 34.62 2.01
4987 5172 5.940192 CACACTAGCCACAGATTTGTTTA 57.060 39.130 0.00 0.00 34.62 2.01
4988 5173 4.836125 CACACTAGCCACAGATTTGTTT 57.164 40.909 0.00 0.00 34.62 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.