Multiple sequence alignment - TraesCS1A01G048200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G048200 chr1A 100.000 4816 0 0 1 4816 29992438 29997253 0.000000e+00 8894.0
1 TraesCS1A01G048200 chr1A 89.172 1727 121 21 2745 4417 50929214 50930928 0.000000e+00 2093.0
2 TraesCS1A01G048200 chr1A 91.916 1138 61 9 945 2075 50926975 50928088 0.000000e+00 1563.0
3 TraesCS1A01G048200 chr1A 94.841 911 47 0 1 911 59219817 59220727 0.000000e+00 1423.0
4 TraesCS1A01G048200 chr1A 78.701 662 109 20 1337 1978 50845314 50844665 3.470000e-111 412.0
5 TraesCS1A01G048200 chr1A 78.981 628 103 19 1337 1945 29883619 29883002 7.510000e-108 401.0
6 TraesCS1A01G048200 chr1A 78.261 644 93 27 1325 1944 50841076 50840456 2.120000e-98 370.0
7 TraesCS1A01G048200 chr1A 75.406 801 141 31 2725 3479 50962695 50963485 2.150000e-88 337.0
8 TraesCS1A01G048200 chr1A 88.462 208 24 0 2532 2739 50928964 50929171 8.000000e-63 252.0
9 TraesCS1A01G048200 chr1A 89.781 137 6 4 1951 2087 50928090 50928218 8.290000e-38 169.0
10 TraesCS1A01G048200 chr1A 72.926 458 90 24 1072 1515 29607769 29608206 1.410000e-25 128.0
11 TraesCS1A01G048200 chr1A 80.124 161 15 7 2504 2656 50844078 50843927 2.370000e-18 104.0
12 TraesCS1A01G048200 chr1A 79.012 162 20 9 2504 2656 29878031 29877875 1.100000e-16 99.0
13 TraesCS1A01G048200 chr1A 81.443 97 11 2 3947 4043 50930519 50930608 6.690000e-09 73.1
14 TraesCS1A01G048200 chr1A 96.970 33 1 0 4489 4521 50935391 50935423 6.730000e-04 56.5
15 TraesCS1A01G048200 chr1D 88.537 1832 126 33 2745 4502 28819812 28817991 0.000000e+00 2143.0
16 TraesCS1A01G048200 chr1D 92.583 1119 65 8 967 2075 28822024 28820914 0.000000e+00 1591.0
17 TraesCS1A01G048200 chr1D 76.325 604 114 20 3217 3804 28968202 28967612 3.640000e-76 296.0
18 TraesCS1A01G048200 chr1D 76.119 603 117 18 3217 3804 28489293 28489883 1.700000e-74 291.0
19 TraesCS1A01G048200 chr1D 76.119 603 117 18 3217 3804 28504121 28504711 1.700000e-74 291.0
20 TraesCS1A01G048200 chr1D 88.293 205 24 0 2535 2739 28820060 28819856 3.720000e-61 246.0
21 TraesCS1A01G048200 chr1D 73.136 711 139 38 1330 2002 28978457 28977761 1.760000e-49 207.0
22 TraesCS1A01G048200 chr1D 90.625 128 4 4 1960 2087 28820903 28820784 3.860000e-36 163.0
23 TraesCS1A01G048200 chr1D 72.393 652 130 36 1329 1945 28500891 28501527 1.390000e-35 161.0
24 TraesCS1A01G048200 chr1D 72.079 659 128 40 1330 1945 28486052 28486697 3.880000e-31 147.0
25 TraesCS1A01G048200 chr1D 82.474 97 10 2 3947 4043 28818475 28818386 1.440000e-10 78.7
26 TraesCS1A01G048200 chr1D 79.032 124 17 7 1830 1949 393773134 393773252 5.170000e-10 76.8
27 TraesCS1A01G048200 chr7A 96.487 911 31 1 1 911 69558554 69557645 0.000000e+00 1504.0
28 TraesCS1A01G048200 chr5A 96.484 910 30 2 2 911 3344699 3345606 0.000000e+00 1502.0
29 TraesCS1A01G048200 chr1B 93.524 911 54 3 1 911 212753090 212753995 0.000000e+00 1351.0
30 TraesCS1A01G048200 chr1B 79.638 663 102 21 1337 1978 47509943 47509293 3.420000e-121 446.0
31 TraesCS1A01G048200 chr1B 77.548 677 103 30 1325 1978 47544321 47544971 3.540000e-96 363.0
32 TraesCS1A01G048200 chr1B 76.539 601 118 15 3217 3804 47164029 47164619 1.680000e-79 307.0
33 TraesCS1A01G048200 chr1B 70.878 1037 198 70 970 1945 47160191 47161184 3.880000e-31 147.0
34 TraesCS1A01G048200 chr1B 78.125 160 21 8 2504 2656 47508698 47508546 6.640000e-14 89.8
35 TraesCS1A01G048200 chr1B 80.612 98 13 4 1830 1924 529209582 529209488 2.400000e-08 71.3
36 TraesCS1A01G048200 chr1B 100.000 34 0 0 2607 2640 47545234 47545267 4.020000e-06 63.9
37 TraesCS1A01G048200 chr2A 93.304 911 57 4 1 911 583149881 583150787 0.000000e+00 1341.0
38 TraesCS1A01G048200 chr2A 86.288 299 33 6 4518 4815 130172356 130172065 7.780000e-83 318.0
39 TraesCS1A01G048200 chr2A 97.143 35 1 0 4107 4141 224917763 224917729 5.210000e-05 60.2
40 TraesCS1A01G048200 chr3A 93.202 912 61 1 1 911 720846083 720846994 0.000000e+00 1339.0
41 TraesCS1A01G048200 chr3A 86.333 300 32 5 4518 4815 698529274 698528982 7.780000e-83 318.0
42 TraesCS1A01G048200 chr3A 100.000 33 0 0 4106 4138 64052167 64052199 1.450000e-05 62.1
43 TraesCS1A01G048200 chr3A 95.000 40 1 1 4096 4135 150715881 150715919 1.450000e-05 62.1
44 TraesCS1A01G048200 chr6A 91.247 914 74 3 3 911 146558634 146557722 0.000000e+00 1240.0
45 TraesCS1A01G048200 chrUn 90.033 913 85 3 1 912 18217569 18218476 0.000000e+00 1177.0
46 TraesCS1A01G048200 chr3B 89.901 911 84 3 1 911 747517918 747518820 0.000000e+00 1166.0
47 TraesCS1A01G048200 chr3B 85.619 299 33 4 4518 4815 195646629 195646340 6.060000e-79 305.0
48 TraesCS1A01G048200 chr3B 100.000 33 0 0 4106 4138 82065183 82065215 1.450000e-05 62.1
49 TraesCS1A01G048200 chr6B 90.333 300 23 4 4518 4816 490339788 490339494 5.850000e-104 388.0
50 TraesCS1A01G048200 chr6B 97.222 36 0 1 4107 4142 237701954 237701920 5.210000e-05 60.2
51 TraesCS1A01G048200 chr4B 89.474 285 24 5 4532 4815 211580941 211580662 5.930000e-94 355.0
52 TraesCS1A01G048200 chr2B 87.838 296 30 3 4518 4812 66811743 66812033 4.620000e-90 342.0
53 TraesCS1A01G048200 chr5D 86.667 300 33 4 4518 4815 115396882 115396588 4.650000e-85 326.0
54 TraesCS1A01G048200 chr7D 86.242 298 33 5 4518 4812 32599960 32600252 2.800000e-82 316.0
55 TraesCS1A01G048200 chr4A 85.667 300 32 7 4518 4812 296894575 296894868 6.060000e-79 305.0
56 TraesCS1A01G048200 chr3D 100.000 33 0 0 4106 4138 51113612 51113644 1.450000e-05 62.1
57 TraesCS1A01G048200 chr3D 95.000 40 1 1 4096 4135 135376525 135376563 1.450000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G048200 chr1A 29992438 29997253 4815 False 8894.000000 8894 100.000000 1 4816 1 chr1A.!!$F2 4815
1 TraesCS1A01G048200 chr1A 59219817 59220727 910 False 1423.000000 1423 94.841000 1 911 1 chr1A.!!$F5 910
2 TraesCS1A01G048200 chr1A 50926975 50930928 3953 False 830.020000 2093 88.154800 945 4417 5 chr1A.!!$F6 3472
3 TraesCS1A01G048200 chr1A 29883002 29883619 617 True 401.000000 401 78.981000 1337 1945 1 chr1A.!!$R2 608
4 TraesCS1A01G048200 chr1A 50962695 50963485 790 False 337.000000 337 75.406000 2725 3479 1 chr1A.!!$F4 754
5 TraesCS1A01G048200 chr1A 50840456 50845314 4858 True 295.333333 412 79.028667 1325 2656 3 chr1A.!!$R3 1331
6 TraesCS1A01G048200 chr1D 28817991 28822024 4033 True 844.340000 2143 88.502400 967 4502 5 chr1D.!!$R3 3535
7 TraesCS1A01G048200 chr1D 28967612 28968202 590 True 296.000000 296 76.325000 3217 3804 1 chr1D.!!$R1 587
8 TraesCS1A01G048200 chr1D 28500891 28504711 3820 False 226.000000 291 74.256000 1329 3804 2 chr1D.!!$F3 2475
9 TraesCS1A01G048200 chr1D 28486052 28489883 3831 False 219.000000 291 74.099000 1330 3804 2 chr1D.!!$F2 2474
10 TraesCS1A01G048200 chr1D 28977761 28978457 696 True 207.000000 207 73.136000 1330 2002 1 chr1D.!!$R2 672
11 TraesCS1A01G048200 chr7A 69557645 69558554 909 True 1504.000000 1504 96.487000 1 911 1 chr7A.!!$R1 910
12 TraesCS1A01G048200 chr5A 3344699 3345606 907 False 1502.000000 1502 96.484000 2 911 1 chr5A.!!$F1 909
13 TraesCS1A01G048200 chr1B 212753090 212753995 905 False 1351.000000 1351 93.524000 1 911 1 chr1B.!!$F1 910
14 TraesCS1A01G048200 chr1B 47508546 47509943 1397 True 267.900000 446 78.881500 1337 2656 2 chr1B.!!$R2 1319
15 TraesCS1A01G048200 chr1B 47160191 47164619 4428 False 227.000000 307 73.708500 970 3804 2 chr1B.!!$F2 2834
16 TraesCS1A01G048200 chr1B 47544321 47545267 946 False 213.450000 363 88.774000 1325 2640 2 chr1B.!!$F3 1315
17 TraesCS1A01G048200 chr2A 583149881 583150787 906 False 1341.000000 1341 93.304000 1 911 1 chr2A.!!$F1 910
18 TraesCS1A01G048200 chr3A 720846083 720846994 911 False 1339.000000 1339 93.202000 1 911 1 chr3A.!!$F3 910
19 TraesCS1A01G048200 chr6A 146557722 146558634 912 True 1240.000000 1240 91.247000 3 911 1 chr6A.!!$R1 908
20 TraesCS1A01G048200 chrUn 18217569 18218476 907 False 1177.000000 1177 90.033000 1 912 1 chrUn.!!$F1 911
21 TraesCS1A01G048200 chr3B 747517918 747518820 902 False 1166.000000 1166 89.901000 1 911 1 chr3B.!!$F2 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 517 1.210478 GCACTTCTCTGGGCCTTATGA 59.790 52.381 4.53 0.0 0.0 2.15 F
1347 1368 0.108138 CCAAGACCATGACCGAGGAC 60.108 60.000 0.00 0.0 0.0 3.85 F
1814 1886 0.109597 GGTCAAAGTTGCAGCCATCG 60.110 55.000 0.00 0.0 0.0 3.84 F
2692 4799 0.774276 TGTTCCCCCACAGTGCATAA 59.226 50.000 0.00 0.0 0.0 1.90 F
3381 5682 1.063174 GTGAATCTGGCTGTGAATCGC 59.937 52.381 0.00 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1404 0.030908 GGATCCTGTACGCTTCCTCG 59.969 60.000 3.84 0.00 0.00 4.63 R
3124 5332 0.106708 GCGGCCATGGAGAAGTGATA 59.893 55.000 18.40 0.00 0.00 2.15 R
3428 5736 1.203038 TCAGCCATGTCACCCAATGTT 60.203 47.619 0.00 0.00 0.00 2.71 R
3578 5892 1.975407 GCCATCAGCTGCAACTGGT 60.975 57.895 16.77 7.21 38.26 4.00 R
4795 7886 0.035458 ATATAGTTGCAGAGGCCGGC 59.965 55.000 21.18 21.18 40.13 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 1.745890 CTGACACGGTGAGTTGGGA 59.254 57.895 16.29 0.00 0.00 4.37
215 216 2.100991 GAAAGCGCGGATGCCTTG 59.899 61.111 8.83 0.00 38.08 3.61
259 260 2.094762 ACTGTTTCGCGATAGGCTTT 57.905 45.000 10.88 0.00 40.44 3.51
274 275 1.478654 GGCTTTCCACCTCCTTGAACA 60.479 52.381 0.00 0.00 0.00 3.18
480 481 1.557832 GGCCCAGCATATCGGGTTATA 59.442 52.381 0.00 0.00 45.07 0.98
486 487 4.405680 CCAGCATATCGGGTTATATGGAGA 59.594 45.833 6.11 0.00 39.32 3.71
516 517 1.210478 GCACTTCTCTGGGCCTTATGA 59.790 52.381 4.53 0.00 0.00 2.15
617 618 1.837051 AGCAGTGGAGTCCGTTGGA 60.837 57.895 4.30 0.00 0.00 3.53
746 749 1.592223 GTGCTCTGTACGGGCTCTT 59.408 57.895 13.94 0.00 0.00 2.85
803 810 4.206375 TCATCTGAACTTTGGTGCTCAAA 58.794 39.130 5.85 5.85 42.50 2.69
913 922 4.886971 CGTCTTCGCTCTAAGAAAAATGG 58.113 43.478 0.00 0.00 37.24 3.16
914 923 4.653004 GTCTTCGCTCTAAGAAAAATGGC 58.347 43.478 0.00 0.00 37.24 4.40
915 924 4.154195 GTCTTCGCTCTAAGAAAAATGGCA 59.846 41.667 0.00 0.00 37.24 4.92
916 925 4.759693 TCTTCGCTCTAAGAAAAATGGCAA 59.240 37.500 0.00 0.00 32.59 4.52
917 926 5.240623 TCTTCGCTCTAAGAAAAATGGCAAA 59.759 36.000 0.00 0.00 32.59 3.68
918 927 5.643379 TCGCTCTAAGAAAAATGGCAAAT 57.357 34.783 0.00 0.00 0.00 2.32
919 928 6.751514 TCGCTCTAAGAAAAATGGCAAATA 57.248 33.333 0.00 0.00 0.00 1.40
920 929 6.785191 TCGCTCTAAGAAAAATGGCAAATAG 58.215 36.000 0.00 0.00 0.00 1.73
921 930 5.456822 CGCTCTAAGAAAAATGGCAAATAGC 59.543 40.000 0.00 0.00 44.65 2.97
937 946 7.656707 GCAAATAGCCAATTTTCTCAGAAAA 57.343 32.000 14.99 14.99 35.54 2.29
938 947 8.086851 GCAAATAGCCAATTTTCTCAGAAAAA 57.913 30.769 16.52 0.00 35.54 1.94
973 982 7.037438 ACGGAGTAGAAGATAGATCGATCTAC 58.963 42.308 32.07 24.65 41.94 2.59
986 995 8.640362 TAGATCGATCTACGGTTTTCTTCCGC 62.640 46.154 27.44 0.00 43.37 5.54
1176 1188 4.760047 GGCTCGAAGAAGGCGGCA 62.760 66.667 13.08 0.00 34.09 5.69
1237 1252 0.179124 GGCAGTGGAGTCGATCAGTC 60.179 60.000 0.00 0.00 0.00 3.51
1252 1267 4.259970 CGATCAGTCAAGCGAAATCGAATT 60.260 41.667 7.06 0.00 43.02 2.17
1255 1270 4.213270 TCAGTCAAGCGAAATCGAATTTGT 59.787 37.500 7.06 0.00 43.02 2.83
1289 1304 8.816640 AAAAAGATCATAAACGCAAAGATTGT 57.183 26.923 0.00 0.00 0.00 2.71
1347 1368 0.108138 CCAAGACCATGACCGAGGAC 60.108 60.000 0.00 0.00 0.00 3.85
1393 1414 4.394712 CCAAGGGCGAGGAAGCGT 62.395 66.667 0.00 0.00 38.18 5.07
1400 1421 1.437986 GCGAGGAAGCGTACAGGAT 59.562 57.895 0.00 0.00 0.00 3.24
1527 1560 1.609208 TGAAGCTGGAGCCAAAAGAC 58.391 50.000 0.00 0.00 43.38 3.01
1541 1574 1.551019 AAAGACCCTACCGACTGGCC 61.551 60.000 0.00 0.00 39.70 5.36
1638 1671 6.041979 ACATCAGTAAGCAAACCCAAATCTTT 59.958 34.615 0.00 0.00 0.00 2.52
1735 1798 1.785041 CGCTTATCCAACCCATGCGG 61.785 60.000 0.00 0.00 38.54 5.69
1814 1886 0.109597 GGTCAAAGTTGCAGCCATCG 60.110 55.000 0.00 0.00 0.00 3.84
1958 2036 5.338365 AGGTTTGTATATTCGTCTCGACAC 58.662 41.667 0.00 0.00 34.89 3.67
2017 2219 5.913137 TGTTCTGGTTTTCACATGACTTT 57.087 34.783 0.00 0.00 0.00 2.66
2018 2220 5.890334 TGTTCTGGTTTTCACATGACTTTC 58.110 37.500 0.00 0.00 0.00 2.62
2019 2221 5.163561 TGTTCTGGTTTTCACATGACTTTCC 60.164 40.000 0.00 0.00 0.00 3.13
2020 2222 3.888930 TCTGGTTTTCACATGACTTTCCC 59.111 43.478 0.00 0.00 0.00 3.97
2022 2224 4.285863 TGGTTTTCACATGACTTTCCCTT 58.714 39.130 0.00 0.00 0.00 3.95
2024 2226 5.894393 TGGTTTTCACATGACTTTCCCTTAA 59.106 36.000 0.00 0.00 0.00 1.85
2028 2230 9.974980 GTTTTCACATGACTTTCCCTTAAATAA 57.025 29.630 0.00 0.00 0.00 1.40
2031 2233 8.877864 TCACATGACTTTCCCTTAAATAATGT 57.122 30.769 0.00 0.00 30.43 2.71
2101 2561 6.984474 AGATTTAAATTCTGCTCATTGGCATG 59.016 34.615 1.43 0.00 41.63 4.06
2116 2576 2.228582 TGGCATGTGTTAACATCAGTGC 59.771 45.455 12.26 17.34 45.50 4.40
2117 2577 2.228582 GGCATGTGTTAACATCAGTGCA 59.771 45.455 25.03 14.65 45.50 4.57
2121 2581 6.092092 GCATGTGTTAACATCAGTGCATTTA 58.908 36.000 21.81 0.00 45.50 1.40
2122 2582 6.585702 GCATGTGTTAACATCAGTGCATTTAA 59.414 34.615 21.81 0.00 45.50 1.52
2208 3107 5.353938 GTCCGTGATATTGCTACCAAGTTA 58.646 41.667 0.00 0.00 33.80 2.24
2229 3131 7.564793 AGTTACATGCATGAACTAGGTGATTA 58.435 34.615 32.75 7.38 31.32 1.75
2262 3164 5.882557 CCATTGTAAACCTGATTGCTACTCT 59.117 40.000 0.00 0.00 0.00 3.24
2270 3172 5.020132 ACCTGATTGCTACTCTGAACTAGT 58.980 41.667 0.00 0.00 0.00 2.57
2272 3174 6.039616 CCTGATTGCTACTCTGAACTAGTTC 58.960 44.000 25.73 25.73 39.91 3.01
2309 3371 6.588204 TGTAGTACCTATTGCCAATGGTTAG 58.412 40.000 14.06 0.40 34.33 2.34
2310 3372 5.968676 AGTACCTATTGCCAATGGTTAGA 57.031 39.130 14.06 0.00 34.33 2.10
2311 3373 5.930135 AGTACCTATTGCCAATGGTTAGAG 58.070 41.667 14.06 0.00 34.33 2.43
2313 3375 3.117512 ACCTATTGCCAATGGTTAGAGGG 60.118 47.826 16.67 8.76 0.00 4.30
2316 3378 3.534357 TTGCCAATGGTTAGAGGGAAA 57.466 42.857 0.00 0.00 0.00 3.13
2322 3384 5.755849 CCAATGGTTAGAGGGAAACATACT 58.244 41.667 0.00 0.00 35.65 2.12
2323 3385 5.590259 CCAATGGTTAGAGGGAAACATACTG 59.410 44.000 0.00 0.00 35.65 2.74
2341 3404 7.467650 ACATACTGAATGATCAATCCATGGAT 58.532 34.615 22.15 22.15 39.07 3.41
2342 3405 7.610692 ACATACTGAATGATCAATCCATGGATC 59.389 37.037 27.45 16.28 39.07 3.36
2343 3406 5.001874 ACTGAATGATCAATCCATGGATCG 58.998 41.667 27.45 17.46 42.19 3.69
2348 3412 8.320617 TGAATGATCAATCCATGGATCGTTATA 58.679 33.333 27.45 12.83 45.17 0.98
2374 3438 1.073763 TGCAAGTGTAAGTGGGATGCT 59.926 47.619 0.00 0.00 33.66 3.79
2428 3500 7.458409 AAGCATGTCACATAAGAAATCAACT 57.542 32.000 0.00 0.00 0.00 3.16
2455 3530 9.577110 AGATGAAATTACATGTATGCTTTTGTG 57.423 29.630 6.36 0.00 0.00 3.33
2458 3533 8.976471 TGAAATTACATGTATGCTTTTGTGTTG 58.024 29.630 6.36 0.00 0.00 3.33
2461 3536 4.549458 ACATGTATGCTTTTGTGTTGCTC 58.451 39.130 0.00 0.00 0.00 4.26
2463 3538 4.645762 TGTATGCTTTTGTGTTGCTCAA 57.354 36.364 0.00 0.00 0.00 3.02
2465 3540 5.414360 TGTATGCTTTTGTGTTGCTCAAAA 58.586 33.333 8.24 8.24 40.77 2.44
2466 3541 6.047870 TGTATGCTTTTGTGTTGCTCAAAAT 58.952 32.000 8.77 0.41 41.67 1.82
2467 3542 6.538021 TGTATGCTTTTGTGTTGCTCAAAATT 59.462 30.769 8.77 2.77 41.67 1.82
2468 3543 7.708322 TGTATGCTTTTGTGTTGCTCAAAATTA 59.292 29.630 8.77 3.77 41.67 1.40
2469 3544 7.733402 ATGCTTTTGTGTTGCTCAAAATTAT 57.267 28.000 8.77 5.33 41.67 1.28
2470 3545 7.551035 TGCTTTTGTGTTGCTCAAAATTATT 57.449 28.000 8.77 0.00 41.67 1.40
2471 3546 7.629130 TGCTTTTGTGTTGCTCAAAATTATTC 58.371 30.769 8.77 0.98 41.67 1.75
2472 3547 7.495279 TGCTTTTGTGTTGCTCAAAATTATTCT 59.505 29.630 8.77 0.00 41.67 2.40
2513 4026 4.640771 TGCTTCCCTACTCTGTTTTCAT 57.359 40.909 0.00 0.00 0.00 2.57
2516 4029 4.393371 GCTTCCCTACTCTGTTTTCATGTC 59.607 45.833 0.00 0.00 0.00 3.06
2518 4031 5.152623 TCCCTACTCTGTTTTCATGTCTG 57.847 43.478 0.00 0.00 0.00 3.51
2519 4032 4.593206 TCCCTACTCTGTTTTCATGTCTGT 59.407 41.667 0.00 0.00 0.00 3.41
2523 4036 7.095187 CCCTACTCTGTTTTCATGTCTGTTTAC 60.095 40.741 0.00 0.00 0.00 2.01
2559 4455 7.159322 ACGAGTTTGAGTATAATCTCTGTGT 57.841 36.000 1.40 0.00 35.68 3.72
2656 4761 5.505780 TCTTGACTGTTTCCCTTTGAGAAA 58.494 37.500 0.00 0.00 0.00 2.52
2659 4764 5.961272 TGACTGTTTCCCTTTGAGAAAAAC 58.039 37.500 0.00 0.00 35.13 2.43
2676 4783 2.086610 AACTGGCCCTTGACAATGTT 57.913 45.000 0.00 0.00 0.00 2.71
2686 4793 0.850100 TGACAATGTTCCCCCACAGT 59.150 50.000 0.00 0.00 0.00 3.55
2692 4799 0.774276 TGTTCCCCCACAGTGCATAA 59.226 50.000 0.00 0.00 0.00 1.90
2715 4822 5.679601 AGCAGATTCTTGAGTCTATTTCCC 58.320 41.667 0.00 0.00 0.00 3.97
2741 4886 6.459710 CCCTCAGTTTGTTTTAGACCAGTTTC 60.460 42.308 0.00 0.00 0.00 2.78
2743 4888 7.148069 CCTCAGTTTGTTTTAGACCAGTTTCTT 60.148 37.037 0.00 0.00 0.00 2.52
2766 4911 4.090761 TCTCCTGTGAAATTCTGCTTGT 57.909 40.909 0.00 0.00 0.00 3.16
2770 4915 6.545666 TCTCCTGTGAAATTCTGCTTGTAAAA 59.454 34.615 0.00 0.00 0.00 1.52
2812 4957 8.355169 GCAATCTATTGGCAAATGAATCTCTTA 58.645 33.333 3.01 0.00 38.21 2.10
2848 4997 6.817184 AGAGTATATGCACACCTTAACGAAT 58.183 36.000 0.00 0.00 0.00 3.34
2873 5032 6.820470 TTTTTGTTTGCCTCTAAATCGTTG 57.180 33.333 0.00 0.00 0.00 4.10
2882 5041 4.703897 CCTCTAAATCGTTGGCATCCTAA 58.296 43.478 0.00 0.00 0.00 2.69
2897 5056 5.524281 GGCATCCTAAGTACAGTTTTCTAGC 59.476 44.000 0.00 0.00 0.00 3.42
2947 5118 1.538950 GCCTCTCCTTTTGCTTCAGTG 59.461 52.381 0.00 0.00 0.00 3.66
2957 5128 5.801947 CCTTTTGCTTCAGTGTACATATTGC 59.198 40.000 0.00 1.48 0.00 3.56
3001 5187 9.607285 TTAAACACGAGATTTTTAAAGATCTGC 57.393 29.630 22.20 13.80 32.96 4.26
3020 5206 1.825090 CATGCTTGCTGACCCAACTA 58.175 50.000 0.00 0.00 0.00 2.24
3032 5218 5.652452 GCTGACCCAACTAGAATTTATTGGT 59.348 40.000 0.00 0.00 40.06 3.67
3039 5225 7.396419 CCAACTAGAATTTATTGGTCGTTACG 58.604 38.462 0.00 0.00 37.42 3.18
3073 5281 7.081526 ACTTCTGCATTTGAGTATTTGCTAG 57.918 36.000 0.00 0.00 36.10 3.42
3145 5419 2.045926 ACTTCTCCATGGCCGCAC 60.046 61.111 6.96 0.00 0.00 5.34
3177 5451 4.449068 GGTGTCAGCATAGATTGGTTATCG 59.551 45.833 0.00 0.00 38.36 2.92
3281 5579 4.218417 GCTATTGTTGTTGTGGATCCTGTT 59.782 41.667 14.23 0.00 0.00 3.16
3381 5682 1.063174 GTGAATCTGGCTGTGAATCGC 59.937 52.381 0.00 0.00 0.00 4.58
3428 5736 3.440173 GCAAGCTTAGCACAGTGGAATTA 59.560 43.478 7.07 0.00 0.00 1.40
3530 5838 4.443034 GGATGTCTAATTTCTGCCCGTACT 60.443 45.833 0.00 0.00 0.00 2.73
3578 5892 7.711846 TCAAGTTGCTTGCTTTTGATAAACTA 58.288 30.769 0.00 0.00 40.84 2.24
3881 6221 7.680442 TGTTATGCAGTGAAGCTGTTATTTA 57.320 32.000 0.00 0.00 46.64 1.40
3919 6259 6.043474 TGTTGTTAGTGGTACCTTTATCCTGT 59.957 38.462 14.36 0.00 0.00 4.00
3971 6311 5.353938 TGTAACGTGGGCAGATTAAGATAC 58.646 41.667 0.00 0.00 0.00 2.24
3994 6334 5.893255 ACATTTGACTATGTAATGTGGGCAT 59.107 36.000 0.00 0.00 40.08 4.40
4057 6402 7.865385 GCAAGTTAAGTTTGATTTGACCATGTA 59.135 33.333 0.00 0.00 0.00 2.29
4149 6498 5.888691 ATTGACGCACAATTGTTGGTATA 57.111 34.783 8.77 2.17 45.60 1.47
4335 7426 3.732943 CGCGAATGAAGGACACTTAAAC 58.267 45.455 0.00 0.00 36.97 2.01
4352 7443 5.885912 ACTTAAACGTAGAGGGACGGTAATA 59.114 40.000 0.00 0.00 43.33 0.98
4417 7508 5.300034 TCCGTCAGTCAGTAAACACTTCTTA 59.700 40.000 0.00 0.00 0.00 2.10
4421 7512 8.548721 CGTCAGTCAGTAAACACTTCTTATTTT 58.451 33.333 0.00 0.00 0.00 1.82
4422 7513 9.651718 GTCAGTCAGTAAACACTTCTTATTTTG 57.348 33.333 0.00 0.00 0.00 2.44
4423 7514 8.342634 TCAGTCAGTAAACACTTCTTATTTTGC 58.657 33.333 0.00 0.00 0.00 3.68
4490 7581 9.681692 CTTGTTCAATCAGTCAATTTGTCAATA 57.318 29.630 0.00 0.00 0.00 1.90
4508 7599 9.665719 TTGTCAATACTATGCTACTTTCATTCA 57.334 29.630 0.00 0.00 0.00 2.57
4509 7600 9.098355 TGTCAATACTATGCTACTTTCATTCAC 57.902 33.333 0.00 0.00 0.00 3.18
4510 7601 8.552034 GTCAATACTATGCTACTTTCATTCACC 58.448 37.037 0.00 0.00 0.00 4.02
4511 7602 8.264347 TCAATACTATGCTACTTTCATTCACCA 58.736 33.333 0.00 0.00 0.00 4.17
4512 7603 9.060347 CAATACTATGCTACTTTCATTCACCAT 57.940 33.333 0.00 0.00 0.00 3.55
4513 7604 6.932356 ACTATGCTACTTTCATTCACCATG 57.068 37.500 0.00 0.00 0.00 3.66
4514 7605 6.653020 ACTATGCTACTTTCATTCACCATGA 58.347 36.000 0.00 0.00 40.43 3.07
4515 7606 5.824904 ATGCTACTTTCATTCACCATGAC 57.175 39.130 0.00 0.00 41.98 3.06
4516 7607 3.684305 TGCTACTTTCATTCACCATGACG 59.316 43.478 0.00 0.00 41.98 4.35
4517 7608 3.684788 GCTACTTTCATTCACCATGACGT 59.315 43.478 0.00 0.00 41.98 4.34
4518 7609 4.868171 GCTACTTTCATTCACCATGACGTA 59.132 41.667 0.00 0.00 41.98 3.57
4519 7610 5.220416 GCTACTTTCATTCACCATGACGTAC 60.220 44.000 0.00 0.00 41.98 3.67
4520 7611 4.637276 ACTTTCATTCACCATGACGTACA 58.363 39.130 0.00 0.00 41.98 2.90
4521 7612 5.245531 ACTTTCATTCACCATGACGTACAT 58.754 37.500 0.00 0.00 41.98 2.29
4522 7613 5.705441 ACTTTCATTCACCATGACGTACATT 59.295 36.000 0.00 0.00 41.98 2.71
4523 7614 6.876789 ACTTTCATTCACCATGACGTACATTA 59.123 34.615 0.00 0.00 41.98 1.90
4524 7615 7.552687 ACTTTCATTCACCATGACGTACATTAT 59.447 33.333 0.00 0.00 41.98 1.28
4525 7616 7.477144 TTCATTCACCATGACGTACATTATC 57.523 36.000 0.00 0.00 41.98 1.75
4526 7617 6.816136 TCATTCACCATGACGTACATTATCT 58.184 36.000 0.00 0.00 36.94 1.98
4527 7618 6.923508 TCATTCACCATGACGTACATTATCTC 59.076 38.462 0.00 0.00 36.94 2.75
4528 7619 5.845391 TCACCATGACGTACATTATCTCA 57.155 39.130 0.00 0.00 37.07 3.27
4529 7620 6.405278 TCACCATGACGTACATTATCTCAT 57.595 37.500 0.00 0.00 37.07 2.90
4530 7621 6.816136 TCACCATGACGTACATTATCTCATT 58.184 36.000 0.00 0.00 37.07 2.57
4531 7622 7.947282 TCACCATGACGTACATTATCTCATTA 58.053 34.615 0.00 0.00 37.07 1.90
4532 7623 8.585018 TCACCATGACGTACATTATCTCATTAT 58.415 33.333 0.00 0.00 37.07 1.28
4533 7624 9.208022 CACCATGACGTACATTATCTCATTATT 57.792 33.333 0.00 0.00 37.07 1.40
4595 7686 9.507329 TTTATATCTTGCAGGAGGATATCAAAC 57.493 33.333 9.50 0.00 35.26 2.93
4596 7687 4.842531 TCTTGCAGGAGGATATCAAACA 57.157 40.909 4.83 0.00 0.00 2.83
4597 7688 4.517285 TCTTGCAGGAGGATATCAAACAC 58.483 43.478 4.83 0.00 0.00 3.32
4599 7690 4.574674 TGCAGGAGGATATCAAACACTT 57.425 40.909 4.83 0.00 0.00 3.16
4601 7692 4.701651 TGCAGGAGGATATCAAACACTTTG 59.298 41.667 4.83 0.00 41.96 2.77
4602 7693 4.096984 GCAGGAGGATATCAAACACTTTGG 59.903 45.833 4.83 0.00 40.98 3.28
4605 7696 4.399303 GGAGGATATCAAACACTTTGGTGG 59.601 45.833 4.83 0.00 46.85 4.61
4606 7697 5.253330 GAGGATATCAAACACTTTGGTGGA 58.747 41.667 4.83 0.00 46.85 4.02
4608 7699 6.074648 AGGATATCAAACACTTTGGTGGAAA 58.925 36.000 4.83 0.00 46.85 3.13
4610 7701 7.235399 AGGATATCAAACACTTTGGTGGAAATT 59.765 33.333 4.83 0.00 46.85 1.82
4611 7702 8.527810 GGATATCAAACACTTTGGTGGAAATTA 58.472 33.333 4.83 0.00 46.85 1.40
4612 7703 9.573133 GATATCAAACACTTTGGTGGAAATTAG 57.427 33.333 0.00 0.00 46.85 1.73
4614 7705 7.176589 TCAAACACTTTGGTGGAAATTAGTT 57.823 32.000 1.29 0.00 46.85 2.24
4615 7706 7.038659 TCAAACACTTTGGTGGAAATTAGTTG 58.961 34.615 1.29 0.00 46.85 3.16
4616 7707 6.538945 AACACTTTGGTGGAAATTAGTTGT 57.461 33.333 1.29 0.00 46.85 3.32
4617 7708 6.144078 ACACTTTGGTGGAAATTAGTTGTC 57.856 37.500 1.29 0.00 46.85 3.18
4619 7710 6.323739 ACACTTTGGTGGAAATTAGTTGTCAT 59.676 34.615 1.29 0.00 46.85 3.06
4620 7711 7.147742 ACACTTTGGTGGAAATTAGTTGTCATT 60.148 33.333 1.29 0.00 46.85 2.57
4621 7712 7.710475 CACTTTGGTGGAAATTAGTTGTCATTT 59.290 33.333 0.00 0.00 39.59 2.32
4622 7713 8.264347 ACTTTGGTGGAAATTAGTTGTCATTTT 58.736 29.630 0.00 0.00 0.00 1.82
4623 7714 8.430801 TTTGGTGGAAATTAGTTGTCATTTTG 57.569 30.769 0.00 0.00 0.00 2.44
4625 7716 6.183360 TGGTGGAAATTAGTTGTCATTTTGCT 60.183 34.615 0.00 0.00 0.00 3.91
4626 7717 6.366061 GGTGGAAATTAGTTGTCATTTTGCTC 59.634 38.462 0.00 0.00 0.00 4.26
4627 7718 6.088085 GTGGAAATTAGTTGTCATTTTGCTCG 59.912 38.462 0.00 0.00 0.00 5.03
4629 7720 7.029563 GGAAATTAGTTGTCATTTTGCTCGAT 58.970 34.615 0.00 0.00 0.00 3.59
4630 7721 7.542130 GGAAATTAGTTGTCATTTTGCTCGATT 59.458 33.333 0.00 0.00 0.00 3.34
4631 7722 8.452989 AAATTAGTTGTCATTTTGCTCGATTC 57.547 30.769 0.00 0.00 0.00 2.52
4633 7724 5.039480 AGTTGTCATTTTGCTCGATTCAG 57.961 39.130 0.00 0.00 0.00 3.02
4634 7725 4.756642 AGTTGTCATTTTGCTCGATTCAGA 59.243 37.500 0.00 0.00 0.00 3.27
4636 7727 5.034554 TGTCATTTTGCTCGATTCAGAAC 57.965 39.130 0.00 0.00 0.00 3.01
4637 7728 4.756642 TGTCATTTTGCTCGATTCAGAACT 59.243 37.500 0.00 0.00 0.00 3.01
4656 7747 8.103305 TCAGAACTGAATAAGCTAAAAGGATGT 58.897 33.333 1.79 0.00 36.53 3.06
4657 7748 8.394121 CAGAACTGAATAAGCTAAAAGGATGTC 58.606 37.037 0.00 0.00 0.00 3.06
4659 7750 5.817816 ACTGAATAAGCTAAAAGGATGTCCG 59.182 40.000 0.00 0.00 42.08 4.79
4660 7751 5.984725 TGAATAAGCTAAAAGGATGTCCGA 58.015 37.500 0.00 0.00 42.08 4.55
4661 7752 6.591935 TGAATAAGCTAAAAGGATGTCCGAT 58.408 36.000 0.00 0.00 42.08 4.18
4662 7753 7.732025 TGAATAAGCTAAAAGGATGTCCGATA 58.268 34.615 0.00 0.00 42.08 2.92
4663 7754 8.375506 TGAATAAGCTAAAAGGATGTCCGATAT 58.624 33.333 0.00 0.00 42.08 1.63
4664 7755 9.871238 GAATAAGCTAAAAGGATGTCCGATATA 57.129 33.333 0.00 0.00 42.08 0.86
4665 7756 9.654663 AATAAGCTAAAAGGATGTCCGATATAC 57.345 33.333 0.00 0.00 42.08 1.47
4666 7757 6.038997 AGCTAAAAGGATGTCCGATATACC 57.961 41.667 0.00 0.00 42.08 2.73
4667 7758 5.542635 AGCTAAAAGGATGTCCGATATACCA 59.457 40.000 0.00 0.00 42.08 3.25
4668 7759 6.213600 AGCTAAAAGGATGTCCGATATACCAT 59.786 38.462 0.00 0.00 42.08 3.55
4669 7760 6.535508 GCTAAAAGGATGTCCGATATACCATC 59.464 42.308 0.00 0.00 42.08 3.51
4670 7761 6.433847 AAAAGGATGTCCGATATACCATCA 57.566 37.500 0.00 0.00 42.08 3.07
4674 7765 5.721480 AGGATGTCCGATATACCATCAATCA 59.279 40.000 0.00 0.00 42.08 2.57
4677 7768 6.025749 TGTCCGATATACCATCAATCAGAC 57.974 41.667 0.00 0.00 30.90 3.51
4678 7769 5.538433 TGTCCGATATACCATCAATCAGACA 59.462 40.000 0.00 0.00 35.65 3.41
4679 7770 6.041523 TGTCCGATATACCATCAATCAGACAA 59.958 38.462 0.00 0.00 35.29 3.18
4680 7771 7.099764 GTCCGATATACCATCAATCAGACAAT 58.900 38.462 0.00 0.00 30.71 2.71
4681 7772 7.063898 GTCCGATATACCATCAATCAGACAATG 59.936 40.741 0.00 0.00 30.71 2.82
4682 7773 7.039082 TCCGATATACCATCAATCAGACAATGA 60.039 37.037 0.00 0.00 43.70 2.57
4683 7774 7.603784 CCGATATACCATCAATCAGACAATGAA 59.396 37.037 0.00 0.00 42.53 2.57
4684 7775 8.654215 CGATATACCATCAATCAGACAATGAAG 58.346 37.037 0.00 0.00 42.53 3.02
4685 7776 9.716531 GATATACCATCAATCAGACAATGAAGA 57.283 33.333 0.00 0.00 42.53 2.87
4687 7778 8.812513 ATACCATCAATCAGACAATGAAGAAA 57.187 30.769 0.00 0.00 42.53 2.52
4688 7779 7.154435 ACCATCAATCAGACAATGAAGAAAG 57.846 36.000 0.00 0.00 42.53 2.62
4690 7781 7.232127 ACCATCAATCAGACAATGAAGAAAGTT 59.768 33.333 0.00 0.00 42.53 2.66
4691 7782 8.086522 CCATCAATCAGACAATGAAGAAAGTTT 58.913 33.333 0.00 0.00 42.53 2.66
4711 7802 8.810652 AAGTTTATCTAATTCTGATCTCGAGC 57.189 34.615 7.81 0.00 0.00 5.03
4712 7803 8.177119 AGTTTATCTAATTCTGATCTCGAGCT 57.823 34.615 7.81 0.00 0.00 4.09
4713 7804 8.296713 AGTTTATCTAATTCTGATCTCGAGCTC 58.703 37.037 7.81 8.66 0.00 4.09
4714 7805 5.643379 ATCTAATTCTGATCTCGAGCTCC 57.357 43.478 13.42 3.06 0.00 4.70
4715 7806 4.724399 TCTAATTCTGATCTCGAGCTCCT 58.276 43.478 13.42 0.00 0.00 3.69
4716 7807 5.136828 TCTAATTCTGATCTCGAGCTCCTT 58.863 41.667 13.42 5.14 0.00 3.36
4717 7808 3.731652 ATTCTGATCTCGAGCTCCTTG 57.268 47.619 13.42 4.61 0.00 3.61
4718 7809 2.426842 TCTGATCTCGAGCTCCTTGA 57.573 50.000 13.42 4.27 0.00 3.02
4719 7810 2.296792 TCTGATCTCGAGCTCCTTGAG 58.703 52.381 13.42 9.40 41.91 3.02
4724 7815 2.028130 TCTCGAGCTCCTTGAGAATCC 58.972 52.381 15.04 0.00 45.01 3.01
4725 7816 1.753649 CTCGAGCTCCTTGAGAATCCA 59.246 52.381 8.47 0.00 42.88 3.41
4728 7819 1.836802 GAGCTCCTTGAGAATCCACCT 59.163 52.381 0.87 0.00 0.00 4.00
4729 7820 1.558756 AGCTCCTTGAGAATCCACCTG 59.441 52.381 0.00 0.00 0.00 4.00
4730 7821 1.556911 GCTCCTTGAGAATCCACCTGA 59.443 52.381 0.00 0.00 0.00 3.86
4731 7822 2.172293 GCTCCTTGAGAATCCACCTGAT 59.828 50.000 0.00 0.00 34.22 2.90
4732 7823 3.806380 CTCCTTGAGAATCCACCTGATG 58.194 50.000 0.00 0.00 32.68 3.07
4733 7824 3.184628 TCCTTGAGAATCCACCTGATGT 58.815 45.455 0.00 0.00 32.68 3.06
4734 7825 4.361783 TCCTTGAGAATCCACCTGATGTA 58.638 43.478 0.00 0.00 32.68 2.29
4735 7826 4.406972 TCCTTGAGAATCCACCTGATGTAG 59.593 45.833 0.00 0.00 32.68 2.74
4736 7827 4.163078 CCTTGAGAATCCACCTGATGTAGT 59.837 45.833 0.00 0.00 32.68 2.73
4738 7829 4.352893 TGAGAATCCACCTGATGTAGTCA 58.647 43.478 0.00 0.00 32.68 3.41
4739 7830 4.777366 TGAGAATCCACCTGATGTAGTCAA 59.223 41.667 0.00 0.00 36.14 3.18
4741 7832 5.738909 AGAATCCACCTGATGTAGTCAAAG 58.261 41.667 0.00 0.00 36.14 2.77
4742 7833 5.485353 AGAATCCACCTGATGTAGTCAAAGA 59.515 40.000 0.00 0.00 36.14 2.52
4744 7835 3.901222 TCCACCTGATGTAGTCAAAGACA 59.099 43.478 0.00 0.00 36.14 3.41
4747 7838 5.337894 CCACCTGATGTAGTCAAAGACAGAT 60.338 44.000 0.00 0.00 36.14 2.90
4748 7839 5.579904 CACCTGATGTAGTCAAAGACAGATG 59.420 44.000 0.00 0.00 36.14 2.90
4749 7840 5.247110 ACCTGATGTAGTCAAAGACAGATGT 59.753 40.000 0.00 0.00 36.14 3.06
4750 7841 5.809562 CCTGATGTAGTCAAAGACAGATGTC 59.190 44.000 4.77 4.77 39.77 3.06
4751 7842 5.724328 TGATGTAGTCAAAGACAGATGTCC 58.276 41.667 9.31 0.00 38.71 4.02
4752 7843 5.481824 TGATGTAGTCAAAGACAGATGTCCT 59.518 40.000 9.31 2.23 38.71 3.85
4754 7845 6.516739 TGTAGTCAAAGACAGATGTCCTAG 57.483 41.667 9.31 0.33 45.85 3.02
4755 7846 4.464069 AGTCAAAGACAGATGTCCTAGC 57.536 45.455 9.31 0.00 45.85 3.42
4756 7847 3.196685 AGTCAAAGACAGATGTCCTAGCC 59.803 47.826 9.31 0.00 45.85 3.93
4757 7848 2.501723 TCAAAGACAGATGTCCTAGCCC 59.498 50.000 9.31 0.00 45.85 5.19
4760 7851 2.769209 AGACAGATGTCCTAGCCCAAT 58.231 47.619 9.31 0.00 45.85 3.16
4761 7852 3.118531 AGACAGATGTCCTAGCCCAATT 58.881 45.455 9.31 0.00 45.85 2.32
4762 7853 3.135530 AGACAGATGTCCTAGCCCAATTC 59.864 47.826 9.31 0.00 45.85 2.17
4763 7854 2.173569 ACAGATGTCCTAGCCCAATTCC 59.826 50.000 0.00 0.00 0.00 3.01
4764 7855 1.777272 AGATGTCCTAGCCCAATTCCC 59.223 52.381 0.00 0.00 0.00 3.97
4765 7856 1.494721 GATGTCCTAGCCCAATTCCCA 59.505 52.381 0.00 0.00 0.00 4.37
4766 7857 0.623723 TGTCCTAGCCCAATTCCCAC 59.376 55.000 0.00 0.00 0.00 4.61
4768 7859 0.551377 TCCTAGCCCAATTCCCACCA 60.551 55.000 0.00 0.00 0.00 4.17
4769 7860 0.557729 CCTAGCCCAATTCCCACCAT 59.442 55.000 0.00 0.00 0.00 3.55
4771 7862 0.396974 TAGCCCAATTCCCACCATGC 60.397 55.000 0.00 0.00 0.00 4.06
4772 7863 2.734720 GCCCAATTCCCACCATGCC 61.735 63.158 0.00 0.00 0.00 4.40
4773 7864 2.065789 CCCAATTCCCACCATGCCC 61.066 63.158 0.00 0.00 0.00 5.36
4774 7865 1.305971 CCAATTCCCACCATGCCCA 60.306 57.895 0.00 0.00 0.00 5.36
4775 7866 1.616091 CCAATTCCCACCATGCCCAC 61.616 60.000 0.00 0.00 0.00 4.61
4776 7867 1.306056 AATTCCCACCATGCCCACC 60.306 57.895 0.00 0.00 0.00 4.61
4778 7869 0.923729 ATTCCCACCATGCCCACCTA 60.924 55.000 0.00 0.00 0.00 3.08
4780 7871 1.151450 CCCACCATGCCCACCTATC 59.849 63.158 0.00 0.00 0.00 2.08
4781 7872 1.644437 CCCACCATGCCCACCTATCA 61.644 60.000 0.00 0.00 0.00 2.15
4782 7873 0.258484 CCACCATGCCCACCTATCAA 59.742 55.000 0.00 0.00 0.00 2.57
4783 7874 1.392589 CACCATGCCCACCTATCAAC 58.607 55.000 0.00 0.00 0.00 3.18
4784 7875 0.107214 ACCATGCCCACCTATCAACG 60.107 55.000 0.00 0.00 0.00 4.10
4786 7877 1.016627 CATGCCCACCTATCAACGTG 58.983 55.000 0.00 0.00 0.00 4.49
4787 7878 0.908910 ATGCCCACCTATCAACGTGA 59.091 50.000 0.00 0.00 31.36 4.35
4788 7879 0.687920 TGCCCACCTATCAACGTGAA 59.312 50.000 0.00 0.00 31.36 3.18
4789 7880 1.280710 TGCCCACCTATCAACGTGAAT 59.719 47.619 0.00 0.00 31.36 2.57
4791 7882 2.097466 GCCCACCTATCAACGTGAATTG 59.903 50.000 0.00 0.00 31.36 2.32
4794 7885 3.440173 CCACCTATCAACGTGAATTGCTT 59.560 43.478 0.00 0.00 31.36 3.91
4795 7886 4.406069 CACCTATCAACGTGAATTGCTTG 58.594 43.478 0.00 0.00 31.36 4.01
4797 7888 2.352503 ATCAACGTGAATTGCTTGCC 57.647 45.000 0.00 0.00 0.00 4.52
4798 7889 0.040514 TCAACGTGAATTGCTTGCCG 60.041 50.000 0.00 0.00 0.00 5.69
4799 7890 1.003262 CAACGTGAATTGCTTGCCGG 61.003 55.000 0.00 0.00 0.00 6.13
4801 7892 2.125952 GTGAATTGCTTGCCGGCC 60.126 61.111 26.77 9.46 0.00 6.13
4805 7896 2.275547 GAATTGCTTGCCGGCCTCTG 62.276 60.000 26.77 12.30 0.00 3.35
4809 7900 3.741476 CTTGCCGGCCTCTGCAAC 61.741 66.667 26.77 0.00 42.19 4.17
4810 7901 4.269523 TTGCCGGCCTCTGCAACT 62.270 61.111 26.77 0.00 42.19 3.16
4811 7902 2.803155 CTTGCCGGCCTCTGCAACTA 62.803 60.000 26.77 0.00 42.19 2.24
4812 7903 2.190578 GCCGGCCTCTGCAACTAT 59.809 61.111 18.11 0.00 40.13 2.12
4814 7905 0.035458 GCCGGCCTCTGCAACTATAT 59.965 55.000 18.11 0.00 40.13 0.86
4815 7906 1.275291 GCCGGCCTCTGCAACTATATA 59.725 52.381 18.11 0.00 40.13 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 1.640917 TTTCCCCGAGTTAGTGAGCT 58.359 50.000 0.00 0.00 0.00 4.09
237 238 1.076332 GCCTATCGCGAAACAGTTGT 58.924 50.000 15.24 0.00 0.00 3.32
259 260 1.559682 GGCTATGTTCAAGGAGGTGGA 59.440 52.381 0.00 0.00 0.00 4.02
274 275 1.687563 GGCCCATTACGTTTGGCTAT 58.312 50.000 14.33 0.00 43.50 2.97
480 481 0.323725 GTGCCCCAACACATCTCCAT 60.324 55.000 0.00 0.00 40.40 3.41
486 487 0.773644 AGAGAAGTGCCCCAACACAT 59.226 50.000 0.00 0.00 43.23 3.21
746 749 2.396590 GCCAAACGAGATTACAGGGA 57.603 50.000 0.00 0.00 0.00 4.20
819 826 7.286775 ACCACAAACCAAGTCTTAATACAACAT 59.713 33.333 0.00 0.00 0.00 2.71
913 922 7.656707 TTTTCTGAGAAAATTGGCTATTTGC 57.343 32.000 15.81 6.00 36.57 3.68
938 947 9.240734 TCTATCTTCTACTCCGTTCTAGTTTTT 57.759 33.333 0.00 0.00 0.00 1.94
939 948 8.804912 TCTATCTTCTACTCCGTTCTAGTTTT 57.195 34.615 0.00 0.00 0.00 2.43
940 949 8.983702 ATCTATCTTCTACTCCGTTCTAGTTT 57.016 34.615 0.00 0.00 0.00 2.66
941 950 7.385752 CGATCTATCTTCTACTCCGTTCTAGTT 59.614 40.741 0.00 0.00 0.00 2.24
942 951 6.869913 CGATCTATCTTCTACTCCGTTCTAGT 59.130 42.308 0.00 0.00 0.00 2.57
943 952 7.092079 TCGATCTATCTTCTACTCCGTTCTAG 58.908 42.308 0.00 0.00 0.00 2.43
944 953 6.990798 TCGATCTATCTTCTACTCCGTTCTA 58.009 40.000 0.00 0.00 0.00 2.10
945 954 5.856156 TCGATCTATCTTCTACTCCGTTCT 58.144 41.667 0.00 0.00 0.00 3.01
946 955 6.592607 AGATCGATCTATCTTCTACTCCGTTC 59.407 42.308 26.27 0.00 34.85 3.95
947 956 6.469410 AGATCGATCTATCTTCTACTCCGTT 58.531 40.000 26.27 0.00 34.85 4.44
986 995 2.587194 CCATCGCCGCTCTCCTTG 60.587 66.667 0.00 0.00 0.00 3.61
1016 1025 6.352516 AGCTCAATGTAAGAATCGATTTCCT 58.647 36.000 12.81 2.62 34.67 3.36
1044 1053 1.438469 CCTCCATCCTATCAGCCCAA 58.562 55.000 0.00 0.00 0.00 4.12
1184 1199 1.743321 GCTCTCCTCCACTGGATCCG 61.743 65.000 7.39 4.62 35.30 4.18
1191 1206 1.867919 CGTTGTCGCTCTCCTCCACT 61.868 60.000 0.00 0.00 0.00 4.00
1272 1287 5.156355 AGCTTGACAATCTTTGCGTTTATG 58.844 37.500 0.00 0.00 0.00 1.90
1273 1288 5.376854 AGCTTGACAATCTTTGCGTTTAT 57.623 34.783 0.00 0.00 0.00 1.40
1289 1304 1.768275 TCTTCACTCCCACAAGCTTGA 59.232 47.619 32.50 9.45 0.00 3.02
1322 1337 1.751437 GGTCATGGTCTTGGGCTTAC 58.249 55.000 0.00 0.00 0.00 2.34
1335 1356 1.226323 GACGTCGTCCTCGGTCATG 60.226 63.158 14.60 0.00 37.69 3.07
1383 1404 0.030908 GGATCCTGTACGCTTCCTCG 59.969 60.000 3.84 0.00 0.00 4.63
1389 1410 1.043673 GGTCCTGGATCCTGTACGCT 61.044 60.000 14.23 0.00 0.00 5.07
1393 1414 0.337082 TTCCGGTCCTGGATCCTGTA 59.663 55.000 14.23 0.00 38.00 2.74
1471 1492 1.517832 CCATCCACTGGTCCGAGAC 59.482 63.158 0.00 0.00 40.49 3.36
1550 1583 0.606604 TTCACGGTAGTCCTTGGCTC 59.393 55.000 0.00 0.00 34.30 4.70
1638 1671 3.346028 TGATCAGGAGGTAGATAGGGGA 58.654 50.000 0.00 0.00 0.00 4.81
1735 1798 0.179169 GAGGCTTCTCGTCCGTGTAC 60.179 60.000 0.00 0.00 0.00 2.90
1814 1886 2.054453 GCCACCCCAATTCCTCTGC 61.054 63.158 0.00 0.00 0.00 4.26
1958 2036 6.260936 CAGAGGTAACATAGGCACCAAATAAG 59.739 42.308 2.08 0.00 41.41 1.73
2031 2233 7.181305 TCTCCCAATAGTCCAGTACATTTTGTA 59.819 37.037 0.00 0.00 0.00 2.41
2033 2235 6.414732 TCTCCCAATAGTCCAGTACATTTTG 58.585 40.000 0.00 0.00 0.00 2.44
2090 2292 5.106038 ACTGATGTTAACACATGCCAATGAG 60.106 40.000 11.22 0.00 44.22 2.90
2091 2293 4.766373 ACTGATGTTAACACATGCCAATGA 59.234 37.500 11.22 0.00 44.22 2.57
2092 2294 4.860352 CACTGATGTTAACACATGCCAATG 59.140 41.667 11.22 1.27 44.22 2.82
2093 2295 4.618927 GCACTGATGTTAACACATGCCAAT 60.619 41.667 11.22 0.00 44.22 3.16
2101 2561 9.410556 AGAAATTAAATGCACTGATGTTAACAC 57.589 29.630 11.22 5.88 0.00 3.32
2177 3076 0.389391 AATATCACGGACCCTCGCAG 59.611 55.000 0.00 0.00 0.00 5.18
2182 3081 1.692519 GGTAGCAATATCACGGACCCT 59.307 52.381 0.00 0.00 0.00 4.34
2208 3107 8.840321 GTTTATAATCACCTAGTTCATGCATGT 58.160 33.333 25.43 9.95 0.00 3.21
2229 3131 5.329399 TCAGGTTTACAATGGCTGGTTTAT 58.671 37.500 0.00 0.00 0.00 1.40
2292 3354 3.138283 TCCCTCTAACCATTGGCAATAGG 59.862 47.826 13.23 17.64 0.00 2.57
2309 3371 7.040823 GGATTGATCATTCAGTATGTTTCCCTC 60.041 40.741 17.08 0.00 37.40 4.30
2310 3372 6.774656 GGATTGATCATTCAGTATGTTTCCCT 59.225 38.462 17.08 0.00 37.40 4.20
2311 3373 6.547141 TGGATTGATCATTCAGTATGTTTCCC 59.453 38.462 17.08 0.00 37.40 3.97
2313 3375 8.080417 CCATGGATTGATCATTCAGTATGTTTC 58.920 37.037 5.56 0.52 37.40 2.78
2316 3378 6.844829 TCCATGGATTGATCATTCAGTATGT 58.155 36.000 11.44 0.00 37.40 2.29
2322 3384 4.976864 ACGATCCATGGATTGATCATTCA 58.023 39.130 38.26 6.40 38.90 2.57
2323 3385 5.954296 AACGATCCATGGATTGATCATTC 57.046 39.130 38.26 20.18 38.90 2.67
2341 3404 8.865978 CACTTACACTTGCATACTTTATAACGA 58.134 33.333 0.00 0.00 0.00 3.85
2342 3405 8.114290 CCACTTACACTTGCATACTTTATAACG 58.886 37.037 0.00 0.00 0.00 3.18
2343 3406 8.395633 CCCACTTACACTTGCATACTTTATAAC 58.604 37.037 0.00 0.00 0.00 1.89
2348 3412 4.980573 TCCCACTTACACTTGCATACTTT 58.019 39.130 0.00 0.00 0.00 2.66
2474 3549 8.107095 AGGGAAGCAACAACTATATCAACTTAA 58.893 33.333 0.00 0.00 0.00 1.85
2476 3551 6.485171 AGGGAAGCAACAACTATATCAACTT 58.515 36.000 0.00 0.00 0.00 2.66
2477 3552 6.067217 AGGGAAGCAACAACTATATCAACT 57.933 37.500 0.00 0.00 0.00 3.16
2480 3555 6.611642 AGAGTAGGGAAGCAACAACTATATCA 59.388 38.462 0.00 0.00 0.00 2.15
2481 3556 6.926272 CAGAGTAGGGAAGCAACAACTATATC 59.074 42.308 0.00 0.00 0.00 1.63
2482 3557 6.384305 ACAGAGTAGGGAAGCAACAACTATAT 59.616 38.462 0.00 0.00 0.00 0.86
2484 3559 4.532521 ACAGAGTAGGGAAGCAACAACTAT 59.467 41.667 0.00 0.00 0.00 2.12
2486 3561 2.706190 ACAGAGTAGGGAAGCAACAACT 59.294 45.455 0.00 0.00 0.00 3.16
2487 3562 3.127425 ACAGAGTAGGGAAGCAACAAC 57.873 47.619 0.00 0.00 0.00 3.32
2488 3563 3.857157 AACAGAGTAGGGAAGCAACAA 57.143 42.857 0.00 0.00 0.00 2.83
2489 3564 3.857157 AAACAGAGTAGGGAAGCAACA 57.143 42.857 0.00 0.00 0.00 3.33
2490 3565 4.134563 TGAAAACAGAGTAGGGAAGCAAC 58.865 43.478 0.00 0.00 0.00 4.17
2494 3569 5.641209 CAGACATGAAAACAGAGTAGGGAAG 59.359 44.000 0.00 0.00 0.00 3.46
2495 3570 5.071788 ACAGACATGAAAACAGAGTAGGGAA 59.928 40.000 0.00 0.00 0.00 3.97
2496 3571 4.593206 ACAGACATGAAAACAGAGTAGGGA 59.407 41.667 0.00 0.00 0.00 4.20
2513 4026 9.946165 CTCGTATGTTGATATAGTAAACAGACA 57.054 33.333 16.47 8.02 43.00 3.41
2656 4761 2.086610 ACATTGTCAAGGGCCAGTTT 57.913 45.000 6.18 0.00 0.00 2.66
2659 4764 0.890683 GGAACATTGTCAAGGGCCAG 59.109 55.000 6.18 0.00 0.00 4.85
2676 4783 1.302949 GCTTATGCACTGTGGGGGA 59.697 57.895 10.21 0.00 39.41 4.81
2692 4799 5.397334 GGGGAAATAGACTCAAGAATCTGCT 60.397 44.000 0.00 0.00 0.00 4.24
2715 4822 3.821033 CTGGTCTAAAACAAACTGAGGGG 59.179 47.826 0.00 0.00 0.00 4.79
2730 4837 5.365605 TCACAGGAGAAAAGAAACTGGTCTA 59.634 40.000 0.00 0.00 33.63 2.59
2741 4886 5.702349 AGCAGAATTTCACAGGAGAAAAG 57.298 39.130 0.00 0.00 40.54 2.27
2743 4888 4.889409 ACAAGCAGAATTTCACAGGAGAAA 59.111 37.500 0.00 0.00 41.31 2.52
2848 4997 7.596995 CCAACGATTTAGAGGCAAACAAAAATA 59.403 33.333 0.00 0.00 0.00 1.40
2873 5032 5.524281 GCTAGAAAACTGTACTTAGGATGCC 59.476 44.000 0.00 0.00 0.00 4.40
2882 5041 9.502091 TCAAAACATATGCTAGAAAACTGTACT 57.498 29.630 1.58 0.00 0.00 2.73
2976 5160 8.779303 TGCAGATCTTTAAAAATCTCGTGTTTA 58.221 29.630 0.84 0.00 29.77 2.01
2980 5164 6.195983 GCATGCAGATCTTTAAAAATCTCGTG 59.804 38.462 14.21 9.02 29.77 4.35
2981 5165 6.094603 AGCATGCAGATCTTTAAAAATCTCGT 59.905 34.615 21.98 0.00 29.77 4.18
2982 5166 6.493116 AGCATGCAGATCTTTAAAAATCTCG 58.507 36.000 21.98 0.12 29.77 4.04
3001 5187 1.741706 CTAGTTGGGTCAGCAAGCATG 59.258 52.381 0.00 0.00 0.00 4.06
3020 5206 5.727434 AGACCGTAACGACCAATAAATTCT 58.273 37.500 0.00 0.00 0.00 2.40
3032 5218 0.390124 AGTTGCCAAGACCGTAACGA 59.610 50.000 0.00 0.00 31.91 3.85
3057 5243 7.636150 ATCTGTTGCTAGCAAATACTCAAAT 57.364 32.000 30.83 13.96 37.70 2.32
3124 5332 0.106708 GCGGCCATGGAGAAGTGATA 59.893 55.000 18.40 0.00 0.00 2.15
3127 5335 2.046023 TGCGGCCATGGAGAAGTG 60.046 61.111 18.40 0.00 0.00 3.16
3145 5419 1.901591 ATGCTGACACCAAGGAACAG 58.098 50.000 0.00 0.00 0.00 3.16
3177 5451 2.767505 ACTGGAACGACTGGATTGAAC 58.232 47.619 0.00 0.00 0.00 3.18
3281 5579 4.947388 ACTTGCAAGTCAACCTCAAAGTAA 59.053 37.500 26.36 0.00 32.86 2.24
3365 5663 2.772739 GTGCGATTCACAGCCAGAT 58.227 52.632 0.00 0.00 44.98 2.90
3381 5682 5.598748 GTGTCAACACGTTTAAACATGTG 57.401 39.130 19.67 19.25 35.29 3.21
3428 5736 1.203038 TCAGCCATGTCACCCAATGTT 60.203 47.619 0.00 0.00 0.00 2.71
3510 5818 3.857052 CAGTACGGGCAGAAATTAGACA 58.143 45.455 0.00 0.00 0.00 3.41
3530 5838 2.187100 TCCATGTCACTGATACTGGCA 58.813 47.619 0.00 0.00 0.00 4.92
3578 5892 1.975407 GCCATCAGCTGCAACTGGT 60.975 57.895 16.77 7.21 38.26 4.00
3881 6221 4.756642 CACTAACAACACACATCACTCCAT 59.243 41.667 0.00 0.00 0.00 3.41
3971 6311 5.833406 TGCCCACATTACATAGTCAAATG 57.167 39.130 0.00 0.00 36.80 2.32
4006 6346 7.472100 GCCCACATTACATAGTCAAGTCTATCT 60.472 40.741 0.00 0.00 0.00 1.98
4008 6348 6.099701 TGCCCACATTACATAGTCAAGTCTAT 59.900 38.462 0.00 0.00 0.00 1.98
4009 6349 5.423931 TGCCCACATTACATAGTCAAGTCTA 59.576 40.000 0.00 0.00 0.00 2.59
4010 6350 4.225042 TGCCCACATTACATAGTCAAGTCT 59.775 41.667 0.00 0.00 0.00 3.24
4011 6351 4.513442 TGCCCACATTACATAGTCAAGTC 58.487 43.478 0.00 0.00 0.00 3.01
4057 6402 8.584157 CATAGTCAAGTCTATCTTAATCTGCCT 58.416 37.037 0.00 0.00 34.66 4.75
4088 6437 5.186992 GGGAGTAACTTAATTTGCCCACATT 59.813 40.000 0.00 0.00 34.47 2.71
4089 6438 4.709886 GGGAGTAACTTAATTTGCCCACAT 59.290 41.667 0.00 0.00 34.47 3.21
4090 6439 4.083565 GGGAGTAACTTAATTTGCCCACA 58.916 43.478 0.00 0.00 34.47 4.17
4182 6531 6.184068 TCCCTCGATCCAAATTAATTGACAA 58.816 36.000 0.39 0.00 41.85 3.18
4245 6606 4.389992 TCTCTCAATGCAAGAATCGTTGAC 59.610 41.667 0.00 0.00 35.30 3.18
4335 7426 3.985925 GCAATTATTACCGTCCCTCTACG 59.014 47.826 0.00 0.00 42.49 3.51
4352 7443 3.370840 TCCATGCACCTCTAAGCAATT 57.629 42.857 0.00 0.00 44.88 2.32
4423 7514 7.588143 AAATATCAATAAGAGAGGCGATTCG 57.412 36.000 0.62 0.62 0.00 3.34
4490 7581 6.540189 GTCATGGTGAATGAAAGTAGCATAGT 59.460 38.462 0.00 0.00 46.90 2.12
4502 7593 6.816136 AGATAATGTACGTCATGGTGAATGA 58.184 36.000 0.00 0.00 43.24 2.57
4503 7594 6.701400 TGAGATAATGTACGTCATGGTGAATG 59.299 38.462 0.00 0.00 36.81 2.67
4504 7595 6.816136 TGAGATAATGTACGTCATGGTGAAT 58.184 36.000 0.00 0.00 36.81 2.57
4505 7596 6.215495 TGAGATAATGTACGTCATGGTGAA 57.785 37.500 0.00 0.00 36.81 3.18
4506 7597 5.845391 TGAGATAATGTACGTCATGGTGA 57.155 39.130 0.00 0.00 36.81 4.02
4507 7598 8.763049 ATAATGAGATAATGTACGTCATGGTG 57.237 34.615 0.00 0.00 36.81 4.17
4570 7661 8.659527 TGTTTGATATCCTCCTGCAAGATATAA 58.340 33.333 0.00 0.65 34.20 0.98
4571 7662 8.097038 GTGTTTGATATCCTCCTGCAAGATATA 58.903 37.037 0.00 0.93 34.20 0.86
4573 7664 6.100279 AGTGTTTGATATCCTCCTGCAAGATA 59.900 38.462 0.00 0.00 34.07 1.98
4574 7665 5.104193 AGTGTTTGATATCCTCCTGCAAGAT 60.104 40.000 0.00 0.00 34.07 2.40
4575 7666 4.225942 AGTGTTTGATATCCTCCTGCAAGA 59.774 41.667 0.00 0.00 34.07 3.02
4576 7667 4.521146 AGTGTTTGATATCCTCCTGCAAG 58.479 43.478 0.00 0.00 0.00 4.01
4577 7668 4.574674 AGTGTTTGATATCCTCCTGCAA 57.425 40.909 0.00 0.00 0.00 4.08
4578 7669 4.574674 AAGTGTTTGATATCCTCCTGCA 57.425 40.909 0.00 0.00 0.00 4.41
4579 7670 4.096984 CCAAAGTGTTTGATATCCTCCTGC 59.903 45.833 0.00 0.00 43.26 4.85
4580 7671 5.124457 CACCAAAGTGTTTGATATCCTCCTG 59.876 44.000 0.00 0.00 43.26 3.86
4582 7673 4.399303 CCACCAAAGTGTTTGATATCCTCC 59.601 45.833 0.00 0.00 43.26 4.30
4585 7676 5.975693 TTCCACCAAAGTGTTTGATATCC 57.024 39.130 0.00 0.00 43.26 2.59
4586 7677 9.573133 CTAATTTCCACCAAAGTGTTTGATATC 57.427 33.333 0.87 0.00 43.26 1.63
4588 7679 8.472007 ACTAATTTCCACCAAAGTGTTTGATA 57.528 30.769 0.87 0.00 43.26 2.15
4589 7680 7.360113 ACTAATTTCCACCAAAGTGTTTGAT 57.640 32.000 0.87 0.00 43.26 2.57
4590 7681 6.783708 ACTAATTTCCACCAAAGTGTTTGA 57.216 33.333 0.87 0.00 43.26 2.69
4591 7682 6.816140 ACAACTAATTTCCACCAAAGTGTTTG 59.184 34.615 0.00 0.00 42.88 2.93
4592 7683 6.941857 ACAACTAATTTCCACCAAAGTGTTT 58.058 32.000 0.00 0.00 42.88 2.83
4593 7684 6.153680 TGACAACTAATTTCCACCAAAGTGTT 59.846 34.615 0.00 0.00 42.88 3.32
4594 7685 5.654650 TGACAACTAATTTCCACCAAAGTGT 59.345 36.000 0.00 0.00 42.88 3.55
4595 7686 6.142818 TGACAACTAATTTCCACCAAAGTG 57.857 37.500 0.00 0.00 44.12 3.16
4596 7687 6.976934 ATGACAACTAATTTCCACCAAAGT 57.023 33.333 0.00 0.00 0.00 2.66
4597 7688 8.550376 CAAAATGACAACTAATTTCCACCAAAG 58.450 33.333 0.00 0.00 0.00 2.77
4599 7690 6.481644 GCAAAATGACAACTAATTTCCACCAA 59.518 34.615 0.00 0.00 0.00 3.67
4601 7692 6.223120 AGCAAAATGACAACTAATTTCCACC 58.777 36.000 0.00 0.00 0.00 4.61
4602 7693 6.088085 CGAGCAAAATGACAACTAATTTCCAC 59.912 38.462 0.00 0.00 0.00 4.02
4604 7695 6.378582 TCGAGCAAAATGACAACTAATTTCC 58.621 36.000 0.00 0.00 0.00 3.13
4605 7696 8.452989 AATCGAGCAAAATGACAACTAATTTC 57.547 30.769 0.00 0.00 0.00 2.17
4606 7697 8.081633 TGAATCGAGCAAAATGACAACTAATTT 58.918 29.630 0.00 0.00 0.00 1.82
4608 7699 7.119699 TCTGAATCGAGCAAAATGACAACTAAT 59.880 33.333 0.00 0.00 0.00 1.73
4610 7701 5.931724 TCTGAATCGAGCAAAATGACAACTA 59.068 36.000 0.00 0.00 0.00 2.24
4611 7702 4.756642 TCTGAATCGAGCAAAATGACAACT 59.243 37.500 0.00 0.00 0.00 3.16
4612 7703 5.034554 TCTGAATCGAGCAAAATGACAAC 57.965 39.130 0.00 0.00 0.00 3.32
4614 7705 4.756642 AGTTCTGAATCGAGCAAAATGACA 59.243 37.500 0.00 0.00 0.00 3.58
4615 7706 5.084722 CAGTTCTGAATCGAGCAAAATGAC 58.915 41.667 0.00 0.00 0.00 3.06
4616 7707 4.996758 TCAGTTCTGAATCGAGCAAAATGA 59.003 37.500 0.00 2.50 0.00 2.57
4617 7708 5.287170 TCAGTTCTGAATCGAGCAAAATG 57.713 39.130 0.00 0.34 0.00 2.32
4619 7710 5.947228 ATTCAGTTCTGAATCGAGCAAAA 57.053 34.783 18.64 0.00 33.66 2.44
4620 7711 6.402550 GCTTATTCAGTTCTGAATCGAGCAAA 60.403 38.462 31.19 20.53 41.72 3.68
4621 7712 5.063944 GCTTATTCAGTTCTGAATCGAGCAA 59.936 40.000 31.19 20.96 41.72 3.91
4622 7713 4.568359 GCTTATTCAGTTCTGAATCGAGCA 59.432 41.667 31.19 17.35 41.72 4.26
4623 7714 4.808364 AGCTTATTCAGTTCTGAATCGAGC 59.192 41.667 30.28 30.28 42.03 5.03
4625 7716 8.771920 TTTTAGCTTATTCAGTTCTGAATCGA 57.228 30.769 25.03 16.47 39.10 3.59
4626 7717 8.119226 CCTTTTAGCTTATTCAGTTCTGAATCG 58.881 37.037 25.03 19.19 39.10 3.34
4627 7718 9.167311 TCCTTTTAGCTTATTCAGTTCTGAATC 57.833 33.333 25.03 14.68 39.10 2.52
4629 7720 8.950210 CATCCTTTTAGCTTATTCAGTTCTGAA 58.050 33.333 15.99 15.99 0.00 3.02
4630 7721 8.103305 ACATCCTTTTAGCTTATTCAGTTCTGA 58.897 33.333 0.00 0.00 0.00 3.27
4631 7722 8.273780 ACATCCTTTTAGCTTATTCAGTTCTG 57.726 34.615 0.00 0.00 0.00 3.02
4633 7724 7.466050 CGGACATCCTTTTAGCTTATTCAGTTC 60.466 40.741 0.00 0.00 0.00 3.01
4634 7725 6.316390 CGGACATCCTTTTAGCTTATTCAGTT 59.684 38.462 0.00 0.00 0.00 3.16
4636 7727 6.049149 TCGGACATCCTTTTAGCTTATTCAG 58.951 40.000 0.00 0.00 0.00 3.02
4637 7728 5.984725 TCGGACATCCTTTTAGCTTATTCA 58.015 37.500 0.00 0.00 0.00 2.57
4640 7731 8.258708 GGTATATCGGACATCCTTTTAGCTTAT 58.741 37.037 0.00 0.00 0.00 1.73
4641 7732 7.233962 TGGTATATCGGACATCCTTTTAGCTTA 59.766 37.037 0.00 0.00 0.00 3.09
4642 7733 6.042781 TGGTATATCGGACATCCTTTTAGCTT 59.957 38.462 0.00 0.00 0.00 3.74
4644 7735 5.790593 TGGTATATCGGACATCCTTTTAGC 58.209 41.667 0.00 0.00 0.00 3.09
4646 7737 7.547697 TGATGGTATATCGGACATCCTTTTA 57.452 36.000 0.00 0.00 39.08 1.52
4647 7738 6.433847 TGATGGTATATCGGACATCCTTTT 57.566 37.500 0.00 0.00 39.08 2.27
4648 7739 6.433847 TTGATGGTATATCGGACATCCTTT 57.566 37.500 0.00 0.00 39.08 3.11
4649 7740 6.213397 TGATTGATGGTATATCGGACATCCTT 59.787 38.462 0.00 0.00 39.08 3.36
4652 7743 6.754209 GTCTGATTGATGGTATATCGGACATC 59.246 42.308 14.98 0.00 46.58 3.06
4654 7745 6.025749 GTCTGATTGATGGTATATCGGACA 57.974 41.667 14.98 0.00 46.58 4.02
4656 7747 6.664428 TTGTCTGATTGATGGTATATCGGA 57.336 37.500 0.00 0.00 32.68 4.55
4657 7748 7.099120 TCATTGTCTGATTGATGGTATATCGG 58.901 38.462 0.00 0.00 0.00 4.18
4659 7750 9.716531 TCTTCATTGTCTGATTGATGGTATATC 57.283 33.333 0.00 0.00 32.72 1.63
4661 7752 9.904198 TTTCTTCATTGTCTGATTGATGGTATA 57.096 29.630 0.00 0.00 32.72 1.47
4662 7753 8.812513 TTTCTTCATTGTCTGATTGATGGTAT 57.187 30.769 0.00 0.00 32.72 2.73
4663 7754 7.884877 ACTTTCTTCATTGTCTGATTGATGGTA 59.115 33.333 0.00 0.00 32.72 3.25
4664 7755 6.718454 ACTTTCTTCATTGTCTGATTGATGGT 59.282 34.615 0.00 0.00 32.72 3.55
4665 7756 7.154435 ACTTTCTTCATTGTCTGATTGATGG 57.846 36.000 0.00 0.00 32.72 3.51
4685 7776 9.255304 GCTCGAGATCAGAATTAGATAAACTTT 57.745 33.333 18.75 0.00 0.00 2.66
4687 7778 8.177119 AGCTCGAGATCAGAATTAGATAAACT 57.823 34.615 18.75 0.00 0.00 2.66
4688 7779 7.540745 GGAGCTCGAGATCAGAATTAGATAAAC 59.459 40.741 29.93 5.62 30.87 2.01
4690 7781 6.945435 AGGAGCTCGAGATCAGAATTAGATAA 59.055 38.462 29.93 0.00 30.87 1.75
4691 7782 6.480763 AGGAGCTCGAGATCAGAATTAGATA 58.519 40.000 29.93 0.00 30.87 1.98
4692 7783 5.324409 AGGAGCTCGAGATCAGAATTAGAT 58.676 41.667 29.93 3.40 30.87 1.98
4693 7784 4.724399 AGGAGCTCGAGATCAGAATTAGA 58.276 43.478 29.93 0.00 30.87 2.10
4695 7786 4.889995 TCAAGGAGCTCGAGATCAGAATTA 59.110 41.667 29.93 8.99 30.87 1.40
4696 7787 3.703556 TCAAGGAGCTCGAGATCAGAATT 59.296 43.478 29.93 16.31 30.87 2.17
4697 7788 3.295093 TCAAGGAGCTCGAGATCAGAAT 58.705 45.455 29.93 11.47 30.87 2.40
4698 7789 2.687425 CTCAAGGAGCTCGAGATCAGAA 59.313 50.000 29.93 12.50 30.87 3.02
4699 7790 2.092699 TCTCAAGGAGCTCGAGATCAGA 60.093 50.000 29.93 20.93 30.94 3.27
4700 7791 2.296792 TCTCAAGGAGCTCGAGATCAG 58.703 52.381 29.93 19.08 30.94 2.90
4701 7792 2.426842 TCTCAAGGAGCTCGAGATCA 57.573 50.000 29.93 10.42 30.94 2.92
4702 7793 3.305335 GGATTCTCAAGGAGCTCGAGATC 60.305 52.174 22.26 22.26 35.79 2.75
4703 7794 2.627699 GGATTCTCAAGGAGCTCGAGAT 59.372 50.000 18.75 10.84 35.79 2.75
4705 7796 1.753649 TGGATTCTCAAGGAGCTCGAG 59.246 52.381 8.45 8.45 0.00 4.04
4706 7797 1.478510 GTGGATTCTCAAGGAGCTCGA 59.521 52.381 7.83 0.00 0.00 4.04
4707 7798 1.472376 GGTGGATTCTCAAGGAGCTCG 60.472 57.143 7.83 0.00 0.00 5.03
4708 7799 1.836802 AGGTGGATTCTCAAGGAGCTC 59.163 52.381 4.71 4.71 0.00 4.09
4709 7800 1.558756 CAGGTGGATTCTCAAGGAGCT 59.441 52.381 0.00 0.00 0.00 4.09
4710 7801 1.556911 TCAGGTGGATTCTCAAGGAGC 59.443 52.381 0.00 0.00 0.00 4.70
4711 7802 3.199508 ACATCAGGTGGATTCTCAAGGAG 59.800 47.826 0.00 0.00 32.57 3.69
4712 7803 3.184628 ACATCAGGTGGATTCTCAAGGA 58.815 45.455 0.00 0.00 32.57 3.36
4713 7804 3.641434 ACATCAGGTGGATTCTCAAGG 57.359 47.619 0.00 0.00 32.57 3.61
4714 7805 5.105187 TGACTACATCAGGTGGATTCTCAAG 60.105 44.000 0.00 0.00 32.57 3.02
4715 7806 4.777366 TGACTACATCAGGTGGATTCTCAA 59.223 41.667 0.00 0.00 32.57 3.02
4716 7807 4.352893 TGACTACATCAGGTGGATTCTCA 58.647 43.478 0.00 0.00 32.57 3.27
4717 7808 5.344743 TTGACTACATCAGGTGGATTCTC 57.655 43.478 0.00 0.00 38.99 2.87
4718 7809 5.485353 TCTTTGACTACATCAGGTGGATTCT 59.515 40.000 0.00 0.00 38.99 2.40
4719 7810 5.582665 GTCTTTGACTACATCAGGTGGATTC 59.417 44.000 0.00 0.00 38.99 2.52
4720 7811 5.013079 TGTCTTTGACTACATCAGGTGGATT 59.987 40.000 0.00 0.00 38.99 3.01
4721 7812 4.532126 TGTCTTTGACTACATCAGGTGGAT 59.468 41.667 0.00 0.00 38.99 3.41
4722 7813 3.901222 TGTCTTTGACTACATCAGGTGGA 59.099 43.478 0.00 0.00 38.99 4.02
4724 7815 5.139435 TCTGTCTTTGACTACATCAGGTG 57.861 43.478 0.00 0.00 38.99 4.00
4725 7816 5.247110 ACATCTGTCTTTGACTACATCAGGT 59.753 40.000 0.00 0.00 38.99 4.00
4728 7819 5.481824 AGGACATCTGTCTTTGACTACATCA 59.518 40.000 9.98 0.00 44.20 3.07
4729 7820 5.971763 AGGACATCTGTCTTTGACTACATC 58.028 41.667 9.98 0.00 44.20 3.06
4730 7821 6.406400 GCTAGGACATCTGTCTTTGACTACAT 60.406 42.308 9.98 0.00 44.20 2.29
4731 7822 5.105716 GCTAGGACATCTGTCTTTGACTACA 60.106 44.000 9.98 0.00 44.20 2.74
4732 7823 5.344884 GCTAGGACATCTGTCTTTGACTAC 58.655 45.833 9.98 0.00 44.20 2.73
4733 7824 4.402793 GGCTAGGACATCTGTCTTTGACTA 59.597 45.833 9.98 2.63 44.20 2.59
4734 7825 3.196685 GGCTAGGACATCTGTCTTTGACT 59.803 47.826 9.98 1.65 44.20 3.41
4735 7826 3.526534 GGCTAGGACATCTGTCTTTGAC 58.473 50.000 9.98 2.48 44.20 3.18
4736 7827 2.501723 GGGCTAGGACATCTGTCTTTGA 59.498 50.000 9.98 0.00 44.20 2.69
4738 7829 2.551270 TGGGCTAGGACATCTGTCTTT 58.449 47.619 9.98 2.53 44.20 2.52
4739 7830 2.254152 TGGGCTAGGACATCTGTCTT 57.746 50.000 9.98 5.32 44.20 3.01
4741 7832 3.471680 GAATTGGGCTAGGACATCTGTC 58.528 50.000 1.59 1.59 44.04 3.51
4742 7833 2.173569 GGAATTGGGCTAGGACATCTGT 59.826 50.000 0.00 0.00 0.00 3.41
4744 7835 1.777272 GGGAATTGGGCTAGGACATCT 59.223 52.381 0.00 0.00 0.00 2.90
4747 7838 0.623723 GTGGGAATTGGGCTAGGACA 59.376 55.000 0.00 0.00 0.00 4.02
4748 7839 0.106669 GGTGGGAATTGGGCTAGGAC 60.107 60.000 0.00 0.00 0.00 3.85
4749 7840 0.551377 TGGTGGGAATTGGGCTAGGA 60.551 55.000 0.00 0.00 0.00 2.94
4750 7841 0.557729 ATGGTGGGAATTGGGCTAGG 59.442 55.000 0.00 0.00 0.00 3.02
4751 7842 1.696063 CATGGTGGGAATTGGGCTAG 58.304 55.000 0.00 0.00 0.00 3.42
4752 7843 0.396974 GCATGGTGGGAATTGGGCTA 60.397 55.000 0.00 0.00 0.00 3.93
4754 7845 2.734720 GGCATGGTGGGAATTGGGC 61.735 63.158 0.00 0.00 0.00 5.36
4755 7846 2.065789 GGGCATGGTGGGAATTGGG 61.066 63.158 0.00 0.00 0.00 4.12
4756 7847 1.305971 TGGGCATGGTGGGAATTGG 60.306 57.895 0.00 0.00 0.00 3.16
4757 7848 1.616091 GGTGGGCATGGTGGGAATTG 61.616 60.000 0.00 0.00 0.00 2.32
4760 7851 0.923729 ATAGGTGGGCATGGTGGGAA 60.924 55.000 0.00 0.00 0.00 3.97
4761 7852 1.308657 ATAGGTGGGCATGGTGGGA 60.309 57.895 0.00 0.00 0.00 4.37
4762 7853 1.151450 GATAGGTGGGCATGGTGGG 59.849 63.158 0.00 0.00 0.00 4.61
4763 7854 0.258484 TTGATAGGTGGGCATGGTGG 59.742 55.000 0.00 0.00 0.00 4.61
4764 7855 1.392589 GTTGATAGGTGGGCATGGTG 58.607 55.000 0.00 0.00 0.00 4.17
4765 7856 0.107214 CGTTGATAGGTGGGCATGGT 60.107 55.000 0.00 0.00 0.00 3.55
4766 7857 0.107214 ACGTTGATAGGTGGGCATGG 60.107 55.000 0.00 0.00 0.00 3.66
4768 7859 0.908910 TCACGTTGATAGGTGGGCAT 59.091 50.000 0.00 0.00 39.88 4.40
4769 7860 0.687920 TTCACGTTGATAGGTGGGCA 59.312 50.000 0.00 0.00 39.88 5.36
4771 7862 2.097466 GCAATTCACGTTGATAGGTGGG 59.903 50.000 0.00 0.00 39.88 4.61
4772 7863 3.009723 AGCAATTCACGTTGATAGGTGG 58.990 45.455 0.00 0.00 39.88 4.61
4773 7864 4.406069 CAAGCAATTCACGTTGATAGGTG 58.594 43.478 0.00 0.00 40.60 4.00
4774 7865 3.119849 GCAAGCAATTCACGTTGATAGGT 60.120 43.478 0.00 0.00 0.00 3.08
4775 7866 3.429085 GCAAGCAATTCACGTTGATAGG 58.571 45.455 0.00 0.00 0.00 2.57
4776 7867 3.429085 GGCAAGCAATTCACGTTGATAG 58.571 45.455 0.00 0.00 0.00 2.08
4778 7869 1.401409 CGGCAAGCAATTCACGTTGAT 60.401 47.619 0.00 0.00 0.00 2.57
4780 7871 1.003262 CCGGCAAGCAATTCACGTTG 61.003 55.000 0.00 0.00 0.00 4.10
4781 7872 1.285641 CCGGCAAGCAATTCACGTT 59.714 52.632 0.00 0.00 0.00 3.99
4782 7873 2.953821 CCGGCAAGCAATTCACGT 59.046 55.556 0.00 0.00 0.00 4.49
4783 7874 2.504681 GCCGGCAAGCAATTCACG 60.505 61.111 24.80 0.00 0.00 4.35
4784 7875 2.125952 GGCCGGCAAGCAATTCAC 60.126 61.111 30.85 1.84 0.00 3.18
4786 7877 2.048603 AGAGGCCGGCAAGCAATTC 61.049 57.895 30.85 12.90 0.00 2.17
4787 7878 2.036256 AGAGGCCGGCAAGCAATT 59.964 55.556 30.85 3.57 0.00 2.32
4788 7879 2.753043 CAGAGGCCGGCAAGCAAT 60.753 61.111 30.85 5.94 0.00 3.56
4794 7885 1.334384 TATAGTTGCAGAGGCCGGCA 61.334 55.000 30.85 14.55 41.58 5.69
4795 7886 0.035458 ATATAGTTGCAGAGGCCGGC 59.965 55.000 21.18 21.18 40.13 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.