Multiple sequence alignment - TraesCS1A01G047000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G047000 chr1A 100.000 6893 0 0 1 6893 28763374 28756482 0.000000e+00 12730.0
1 TraesCS1A01G047000 chr1A 88.696 115 9 4 4415 4526 478354570 478354457 3.350000e-28 137.0
2 TraesCS1A01G047000 chr1D 92.330 4133 173 63 357 4425 27901044 27896992 0.000000e+00 5744.0
3 TraesCS1A01G047000 chr1D 95.059 1538 64 5 4513 6040 27896987 27895452 0.000000e+00 2409.0
4 TraesCS1A01G047000 chr1D 82.848 1236 161 28 4508 5724 362124853 362126056 0.000000e+00 1061.0
5 TraesCS1A01G047000 chr1D 93.200 250 8 5 6026 6268 27895429 27895182 6.570000e-95 359.0
6 TraesCS1A01G047000 chr1B 92.015 4095 181 59 396 4425 44072790 44068777 0.000000e+00 5616.0
7 TraesCS1A01G047000 chr1B 94.556 1543 68 8 4511 6040 44068774 44067235 0.000000e+00 2370.0
8 TraesCS1A01G047000 chr1B 92.540 992 72 1 1790 2781 371489767 371490756 0.000000e+00 1421.0
9 TraesCS1A01G047000 chr1B 85.050 1291 145 27 4524 5799 2333018 2334275 0.000000e+00 1271.0
10 TraesCS1A01G047000 chr1B 85.558 914 105 13 3024 3929 383057647 383056753 0.000000e+00 931.0
11 TraesCS1A01G047000 chr1B 88.122 623 50 9 6274 6893 44066554 44065953 0.000000e+00 719.0
12 TraesCS1A01G047000 chr1B 79.126 618 90 21 4516 5117 484647365 484647959 2.330000e-104 390.0
13 TraesCS1A01G047000 chr1B 92.218 257 11 6 6026 6275 44067218 44066964 8.500000e-94 355.0
14 TraesCS1A01G047000 chr1B 89.100 211 23 0 1323 1533 371475564 371475774 5.300000e-66 263.0
15 TraesCS1A01G047000 chr1B 95.775 71 3 0 187 257 44073079 44073009 1.570000e-21 115.0
16 TraesCS1A01G047000 chr3B 92.742 992 70 1 1790 2781 769468555 769469544 0.000000e+00 1432.0
17 TraesCS1A01G047000 chr3B 85.914 1285 130 30 4528 5799 103248102 103249348 0.000000e+00 1323.0
18 TraesCS1A01G047000 chr3B 88.262 443 52 0 1323 1765 769467590 769468032 1.320000e-146 531.0
19 TraesCS1A01G047000 chr3B 95.238 84 4 0 4423 4506 801129559 801129476 4.340000e-27 134.0
20 TraesCS1A01G047000 chr2B 85.465 1259 147 27 4553 5802 794327609 794326378 0.000000e+00 1279.0
21 TraesCS1A01G047000 chr2B 85.139 1292 142 27 4524 5799 774831380 774832637 0.000000e+00 1277.0
22 TraesCS1A01G047000 chr2B 82.155 297 41 4 3079 3371 621320041 621319753 1.920000e-60 244.0
23 TraesCS1A01G047000 chr2B 87.273 55 5 2 1311 1364 59298047 59298100 2.080000e-05 62.1
24 TraesCS1A01G047000 chr6B 85.368 1237 135 27 4574 5799 642319677 642320878 0.000000e+00 1240.0
25 TraesCS1A01G047000 chr2A 85.068 1259 129 29 4574 5798 765269204 765267971 0.000000e+00 1229.0
26 TraesCS1A01G047000 chr7B 83.704 1258 157 26 4553 5799 7129177 7127957 0.000000e+00 1144.0
27 TraesCS1A01G047000 chr7B 90.816 98 8 1 4413 4510 734366936 734366840 5.610000e-26 130.0
28 TraesCS1A01G047000 chr4B 76.788 1314 268 32 1124 2416 431788985 431790282 0.000000e+00 702.0
29 TraesCS1A01G047000 chr4D 76.695 1313 271 30 1124 2416 349183545 349184842 0.000000e+00 697.0
30 TraesCS1A01G047000 chr4D 82.171 387 43 7 3028 3392 157735121 157735503 6.710000e-80 309.0
31 TraesCS1A01G047000 chr4A 76.798 1293 263 30 1148 2419 115795189 115793913 0.000000e+00 691.0
32 TraesCS1A01G047000 chr3A 90.728 302 28 0 1202 1503 692344708 692345009 2.990000e-108 403.0
33 TraesCS1A01G047000 chr5B 83.613 238 28 3 3079 3313 239329143 239328914 5.420000e-51 213.0
34 TraesCS1A01G047000 chr5B 94.253 87 5 0 4417 4503 559465842 559465928 4.340000e-27 134.0
35 TraesCS1A01G047000 chrUn 94.505 91 5 0 4413 4503 316200529 316200619 2.590000e-29 141.0
36 TraesCS1A01G047000 chr6A 94.505 91 5 0 4413 4503 266828667 266828757 2.590000e-29 141.0
37 TraesCS1A01G047000 chr6A 94.505 91 5 0 4413 4503 266868284 266868374 2.590000e-29 141.0
38 TraesCS1A01G047000 chr7A 91.579 95 6 2 4409 4503 247256970 247257062 5.610000e-26 130.0
39 TraesCS1A01G047000 chr7A 94.048 84 5 0 4423 4506 608509213 608509130 2.020000e-25 128.0
40 TraesCS1A01G047000 chr6D 88.073 109 13 0 1408 1516 98089933 98090041 5.610000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G047000 chr1A 28756482 28763374 6892 True 12730.000000 12730 100.000000 1 6893 1 chr1A.!!$R1 6892
1 TraesCS1A01G047000 chr1D 27895182 27901044 5862 True 2837.333333 5744 93.529667 357 6268 3 chr1D.!!$R1 5911
2 TraesCS1A01G047000 chr1D 362124853 362126056 1203 False 1061.000000 1061 82.848000 4508 5724 1 chr1D.!!$F1 1216
3 TraesCS1A01G047000 chr1B 44065953 44073079 7126 True 1835.000000 5616 92.537200 187 6893 5 chr1B.!!$R2 6706
4 TraesCS1A01G047000 chr1B 371489767 371490756 989 False 1421.000000 1421 92.540000 1790 2781 1 chr1B.!!$F3 991
5 TraesCS1A01G047000 chr1B 2333018 2334275 1257 False 1271.000000 1271 85.050000 4524 5799 1 chr1B.!!$F1 1275
6 TraesCS1A01G047000 chr1B 383056753 383057647 894 True 931.000000 931 85.558000 3024 3929 1 chr1B.!!$R1 905
7 TraesCS1A01G047000 chr1B 484647365 484647959 594 False 390.000000 390 79.126000 4516 5117 1 chr1B.!!$F4 601
8 TraesCS1A01G047000 chr3B 103248102 103249348 1246 False 1323.000000 1323 85.914000 4528 5799 1 chr3B.!!$F1 1271
9 TraesCS1A01G047000 chr3B 769467590 769469544 1954 False 981.500000 1432 90.502000 1323 2781 2 chr3B.!!$F2 1458
10 TraesCS1A01G047000 chr2B 794326378 794327609 1231 True 1279.000000 1279 85.465000 4553 5802 1 chr2B.!!$R2 1249
11 TraesCS1A01G047000 chr2B 774831380 774832637 1257 False 1277.000000 1277 85.139000 4524 5799 1 chr2B.!!$F2 1275
12 TraesCS1A01G047000 chr6B 642319677 642320878 1201 False 1240.000000 1240 85.368000 4574 5799 1 chr6B.!!$F1 1225
13 TraesCS1A01G047000 chr2A 765267971 765269204 1233 True 1229.000000 1229 85.068000 4574 5798 1 chr2A.!!$R1 1224
14 TraesCS1A01G047000 chr7B 7127957 7129177 1220 True 1144.000000 1144 83.704000 4553 5799 1 chr7B.!!$R1 1246
15 TraesCS1A01G047000 chr4B 431788985 431790282 1297 False 702.000000 702 76.788000 1124 2416 1 chr4B.!!$F1 1292
16 TraesCS1A01G047000 chr4D 349183545 349184842 1297 False 697.000000 697 76.695000 1124 2416 1 chr4D.!!$F2 1292
17 TraesCS1A01G047000 chr4A 115793913 115795189 1276 True 691.000000 691 76.798000 1148 2419 1 chr4A.!!$R1 1271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.032678 GATCAGCGACGTGGATGGAT 59.967 55.0 15.84 8.02 0.00 3.41 F
169 170 0.034896 TTCCTTTGGCACGAGGAGTC 59.965 55.0 15.92 0.00 42.68 3.36 F
2148 2806 0.532573 TGATCTGCTCCGACAAGACC 59.467 55.0 0.00 0.00 0.00 3.85 F
2992 3656 0.035820 TACGGCCATTTCCCACTGAC 60.036 55.0 2.24 0.00 0.00 3.51 F
3148 3814 0.478072 AGGATGGTTCAGTTGTGCCA 59.522 50.0 0.00 0.00 35.28 4.92 F
4047 4736 0.756903 ACAACCTTACACCAGAGCGT 59.243 50.0 0.00 0.00 0.00 5.07 F
4903 5634 0.321671 TGAGTAGGACTGCTTGTGCC 59.678 55.0 0.00 0.00 37.77 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1857 1.514087 GGAGCCATTGACGACGGTA 59.486 57.895 0.00 0.00 0.00 4.02 R
2154 2812 0.250901 ACATCTGGTTGGTGGTCAGC 60.251 55.000 0.00 0.00 0.00 4.26 R
3121 3787 0.107312 CTGAACCATCCTGGAGCTGG 60.107 60.000 13.62 13.62 40.96 4.85 R
4035 4724 0.320050 TGCAATCACGCTCTGGTGTA 59.680 50.000 0.00 0.00 39.00 2.90 R
4495 5186 1.710809 AGTATTTTGCACCCCCTCTGT 59.289 47.619 0.00 0.00 0.00 3.41 R
5766 6530 1.001764 CAGCACCAGGAGCCATTCA 60.002 57.895 5.06 0.00 0.00 2.57 R
6760 7987 0.462759 AGGCAAGTTATCCAGCGCTC 60.463 55.000 7.13 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.362476 GGGCAGTGCGCAAAAGGG 62.362 66.667 25.77 0.50 45.17 3.95
35 36 4.362476 GGCAGTGCGCAAAAGGGG 62.362 66.667 14.00 0.00 45.17 4.79
36 37 4.362476 GCAGTGCGCAAAAGGGGG 62.362 66.667 14.00 0.00 41.79 5.40
37 38 4.362476 CAGTGCGCAAAAGGGGGC 62.362 66.667 14.00 0.00 45.92 5.80
43 44 4.986708 GCAAAAGGGGGCGGGTCA 62.987 66.667 0.00 0.00 0.00 4.02
44 45 2.203567 CAAAAGGGGGCGGGTCAA 60.204 61.111 0.00 0.00 0.00 3.18
45 46 2.117423 AAAAGGGGGCGGGTCAAG 59.883 61.111 0.00 0.00 0.00 3.02
46 47 3.523374 AAAAGGGGGCGGGTCAAGG 62.523 63.158 0.00 0.00 0.00 3.61
51 52 4.344865 GGGCGGGTCAAGGCTGAA 62.345 66.667 0.00 0.00 31.88 3.02
52 53 2.747855 GGCGGGTCAAGGCTGAAG 60.748 66.667 0.00 0.00 31.88 3.02
53 54 3.435186 GCGGGTCAAGGCTGAAGC 61.435 66.667 0.00 0.00 41.14 3.86
54 55 3.121030 CGGGTCAAGGCTGAAGCG 61.121 66.667 0.00 0.00 43.26 4.68
55 56 2.347490 GGGTCAAGGCTGAAGCGA 59.653 61.111 0.00 0.00 43.26 4.93
56 57 1.302511 GGGTCAAGGCTGAAGCGAA 60.303 57.895 0.00 0.00 43.26 4.70
57 58 1.301677 GGGTCAAGGCTGAAGCGAAG 61.302 60.000 0.00 0.00 43.26 3.79
58 59 1.301677 GGTCAAGGCTGAAGCGAAGG 61.302 60.000 0.00 0.00 43.26 3.46
59 60 0.320771 GTCAAGGCTGAAGCGAAGGA 60.321 55.000 0.00 0.00 43.26 3.36
60 61 0.615331 TCAAGGCTGAAGCGAAGGAT 59.385 50.000 0.00 0.00 43.26 3.24
61 62 1.003580 TCAAGGCTGAAGCGAAGGATT 59.996 47.619 0.00 0.00 43.26 3.01
62 63 2.236146 TCAAGGCTGAAGCGAAGGATTA 59.764 45.455 0.00 0.00 43.26 1.75
63 64 3.118261 TCAAGGCTGAAGCGAAGGATTAT 60.118 43.478 0.00 0.00 43.26 1.28
64 65 3.567478 AGGCTGAAGCGAAGGATTATT 57.433 42.857 0.00 0.00 43.26 1.40
65 66 3.471680 AGGCTGAAGCGAAGGATTATTC 58.528 45.455 0.00 0.00 43.26 1.75
66 67 3.135530 AGGCTGAAGCGAAGGATTATTCT 59.864 43.478 0.00 0.00 43.26 2.40
67 68 3.249559 GGCTGAAGCGAAGGATTATTCTG 59.750 47.826 0.00 0.00 43.26 3.02
68 69 3.249559 GCTGAAGCGAAGGATTATTCTGG 59.750 47.826 0.00 0.00 0.00 3.86
69 70 3.808728 TGAAGCGAAGGATTATTCTGGG 58.191 45.455 0.00 0.00 0.00 4.45
70 71 2.938956 AGCGAAGGATTATTCTGGGG 57.061 50.000 0.00 0.00 0.00 4.96
71 72 2.127708 AGCGAAGGATTATTCTGGGGT 58.872 47.619 0.00 0.00 0.00 4.95
72 73 2.104963 AGCGAAGGATTATTCTGGGGTC 59.895 50.000 0.00 0.00 0.00 4.46
73 74 2.158813 GCGAAGGATTATTCTGGGGTCA 60.159 50.000 0.00 0.00 0.00 4.02
74 75 3.733337 CGAAGGATTATTCTGGGGTCAG 58.267 50.000 0.00 0.00 42.21 3.51
75 76 3.134804 CGAAGGATTATTCTGGGGTCAGT 59.865 47.826 0.00 0.00 41.59 3.41
76 77 4.384208 CGAAGGATTATTCTGGGGTCAGTT 60.384 45.833 0.00 0.00 41.59 3.16
77 78 4.779993 AGGATTATTCTGGGGTCAGTTC 57.220 45.455 0.00 0.00 41.59 3.01
78 79 3.134804 AGGATTATTCTGGGGTCAGTTCG 59.865 47.826 0.00 0.00 41.59 3.95
79 80 3.134081 GGATTATTCTGGGGTCAGTTCGA 59.866 47.826 0.00 0.00 41.59 3.71
80 81 4.383770 GGATTATTCTGGGGTCAGTTCGAA 60.384 45.833 0.00 0.00 41.59 3.71
81 82 2.770164 ATTCTGGGGTCAGTTCGAAG 57.230 50.000 0.00 0.00 41.59 3.79
82 83 0.685097 TTCTGGGGTCAGTTCGAAGG 59.315 55.000 0.00 0.00 41.59 3.46
83 84 0.178944 TCTGGGGTCAGTTCGAAGGA 60.179 55.000 0.00 0.00 41.59 3.36
84 85 0.905357 CTGGGGTCAGTTCGAAGGAT 59.095 55.000 0.00 0.00 36.30 3.24
85 86 2.108168 CTGGGGTCAGTTCGAAGGATA 58.892 52.381 0.00 0.00 36.30 2.59
86 87 2.101582 CTGGGGTCAGTTCGAAGGATAG 59.898 54.545 0.00 0.00 36.30 2.08
87 88 2.291996 TGGGGTCAGTTCGAAGGATAGA 60.292 50.000 0.00 0.00 0.00 1.98
88 89 2.966516 GGGGTCAGTTCGAAGGATAGAT 59.033 50.000 0.00 0.00 0.00 1.98
89 90 3.006003 GGGGTCAGTTCGAAGGATAGATC 59.994 52.174 0.00 0.00 0.00 2.75
90 91 3.637229 GGGTCAGTTCGAAGGATAGATCA 59.363 47.826 0.00 0.00 0.00 2.92
91 92 4.261825 GGGTCAGTTCGAAGGATAGATCAG 60.262 50.000 0.00 0.00 0.00 2.90
92 93 4.295051 GTCAGTTCGAAGGATAGATCAGC 58.705 47.826 0.00 0.00 0.00 4.26
93 94 3.003793 TCAGTTCGAAGGATAGATCAGCG 59.996 47.826 0.00 0.00 0.00 5.18
94 95 3.003793 CAGTTCGAAGGATAGATCAGCGA 59.996 47.826 0.00 0.00 0.00 4.93
95 96 3.003897 AGTTCGAAGGATAGATCAGCGAC 59.996 47.826 0.00 0.00 0.00 5.19
96 97 1.531578 TCGAAGGATAGATCAGCGACG 59.468 52.381 0.00 0.00 0.00 5.12
97 98 1.264557 CGAAGGATAGATCAGCGACGT 59.735 52.381 0.00 0.00 0.00 4.34
98 99 2.656085 GAAGGATAGATCAGCGACGTG 58.344 52.381 0.00 0.00 0.00 4.49
99 100 0.955178 AGGATAGATCAGCGACGTGG 59.045 55.000 0.00 0.00 0.00 4.94
100 101 0.952280 GGATAGATCAGCGACGTGGA 59.048 55.000 0.11 0.00 0.00 4.02
101 102 1.542030 GGATAGATCAGCGACGTGGAT 59.458 52.381 0.11 0.00 0.00 3.41
102 103 2.590073 GATAGATCAGCGACGTGGATG 58.410 52.381 9.73 9.73 0.00 3.51
103 104 0.668535 TAGATCAGCGACGTGGATGG 59.331 55.000 15.84 0.00 0.00 3.51
104 105 1.037579 AGATCAGCGACGTGGATGGA 61.038 55.000 15.84 3.44 0.00 3.41
105 106 0.032678 GATCAGCGACGTGGATGGAT 59.967 55.000 15.84 8.02 0.00 3.41
106 107 0.249615 ATCAGCGACGTGGATGGATG 60.250 55.000 15.84 0.00 0.00 3.51
107 108 1.884464 CAGCGACGTGGATGGATGG 60.884 63.158 8.03 0.00 0.00 3.51
108 109 2.058001 AGCGACGTGGATGGATGGA 61.058 57.895 0.11 0.00 0.00 3.41
109 110 1.592669 GCGACGTGGATGGATGGAG 60.593 63.158 0.11 0.00 0.00 3.86
110 111 1.068083 CGACGTGGATGGATGGAGG 59.932 63.158 0.00 0.00 0.00 4.30
111 112 1.391933 CGACGTGGATGGATGGAGGA 61.392 60.000 0.00 0.00 0.00 3.71
112 113 0.830648 GACGTGGATGGATGGAGGAA 59.169 55.000 0.00 0.00 0.00 3.36
113 114 1.209504 GACGTGGATGGATGGAGGAAA 59.790 52.381 0.00 0.00 0.00 3.13
114 115 1.065418 ACGTGGATGGATGGAGGAAAC 60.065 52.381 0.00 0.00 0.00 2.78
115 116 1.668419 GTGGATGGATGGAGGAAACG 58.332 55.000 0.00 0.00 0.00 3.60
116 117 0.107214 TGGATGGATGGAGGAAACGC 60.107 55.000 0.00 0.00 0.00 4.84
125 126 2.358737 AGGAAACGCCTCGCCTTG 60.359 61.111 0.00 0.00 46.97 3.61
126 127 2.358247 GGAAACGCCTCGCCTTGA 60.358 61.111 0.00 0.00 0.00 3.02
127 128 2.391389 GGAAACGCCTCGCCTTGAG 61.391 63.158 0.00 0.00 44.83 3.02
135 136 2.741092 TCGCCTTGAGAACGCCTT 59.259 55.556 0.00 0.00 0.00 4.35
136 137 1.374252 TCGCCTTGAGAACGCCTTC 60.374 57.895 0.00 0.00 0.00 3.46
137 138 2.391389 CGCCTTGAGAACGCCTTCC 61.391 63.158 0.00 0.00 0.00 3.46
138 139 1.003233 GCCTTGAGAACGCCTTCCT 60.003 57.895 0.00 0.00 0.00 3.36
139 140 1.021920 GCCTTGAGAACGCCTTCCTC 61.022 60.000 0.00 0.00 0.00 3.71
140 141 0.321671 CCTTGAGAACGCCTTCCTCA 59.678 55.000 0.00 0.00 0.00 3.86
141 142 1.065854 CCTTGAGAACGCCTTCCTCAT 60.066 52.381 0.00 0.00 0.00 2.90
142 143 2.275318 CTTGAGAACGCCTTCCTCATC 58.725 52.381 0.00 0.00 0.00 2.92
143 144 1.266178 TGAGAACGCCTTCCTCATCA 58.734 50.000 0.00 0.00 0.00 3.07
144 145 1.623311 TGAGAACGCCTTCCTCATCAA 59.377 47.619 0.00 0.00 0.00 2.57
145 146 2.237143 TGAGAACGCCTTCCTCATCAAT 59.763 45.455 0.00 0.00 0.00 2.57
146 147 2.611292 GAGAACGCCTTCCTCATCAATG 59.389 50.000 0.00 0.00 0.00 2.82
147 148 1.064654 GAACGCCTTCCTCATCAATGC 59.935 52.381 0.00 0.00 0.00 3.56
148 149 0.035152 ACGCCTTCCTCATCAATGCA 60.035 50.000 0.00 0.00 0.00 3.96
149 150 1.315690 CGCCTTCCTCATCAATGCAT 58.684 50.000 0.00 0.00 0.00 3.96
150 151 1.679680 CGCCTTCCTCATCAATGCATT 59.320 47.619 5.99 5.99 0.00 3.56
151 152 2.100252 CGCCTTCCTCATCAATGCATTT 59.900 45.455 9.83 0.00 0.00 2.32
152 153 3.714391 GCCTTCCTCATCAATGCATTTC 58.286 45.455 9.83 0.00 0.00 2.17
153 154 3.492137 GCCTTCCTCATCAATGCATTTCC 60.492 47.826 9.83 0.00 0.00 3.13
154 155 3.958798 CCTTCCTCATCAATGCATTTCCT 59.041 43.478 9.83 0.00 0.00 3.36
155 156 4.404715 CCTTCCTCATCAATGCATTTCCTT 59.595 41.667 9.83 0.00 0.00 3.36
156 157 5.105064 CCTTCCTCATCAATGCATTTCCTTT 60.105 40.000 9.83 0.00 0.00 3.11
157 158 5.333299 TCCTCATCAATGCATTTCCTTTG 57.667 39.130 9.83 0.00 0.00 2.77
158 159 4.160814 TCCTCATCAATGCATTTCCTTTGG 59.839 41.667 9.83 8.30 0.00 3.28
159 160 3.864243 TCATCAATGCATTTCCTTTGGC 58.136 40.909 9.83 0.00 0.00 4.52
160 161 3.261137 TCATCAATGCATTTCCTTTGGCA 59.739 39.130 9.83 0.00 41.00 4.92
161 162 3.042871 TCAATGCATTTCCTTTGGCAC 57.957 42.857 9.83 0.00 39.34 5.01
162 163 1.727880 CAATGCATTTCCTTTGGCACG 59.272 47.619 9.83 0.00 39.34 5.34
163 164 1.255882 ATGCATTTCCTTTGGCACGA 58.744 45.000 0.00 0.00 39.34 4.35
164 165 0.597568 TGCATTTCCTTTGGCACGAG 59.402 50.000 0.00 0.00 0.00 4.18
165 166 0.109132 GCATTTCCTTTGGCACGAGG 60.109 55.000 9.32 9.32 35.88 4.63
166 167 1.533625 CATTTCCTTTGGCACGAGGA 58.466 50.000 13.33 13.33 40.68 3.71
167 168 1.470098 CATTTCCTTTGGCACGAGGAG 59.530 52.381 15.92 4.74 42.68 3.69
168 169 0.472471 TTTCCTTTGGCACGAGGAGT 59.528 50.000 15.92 0.00 42.68 3.85
169 170 0.034896 TTCCTTTGGCACGAGGAGTC 59.965 55.000 15.92 0.00 42.68 3.36
212 213 4.233635 GCCGCGCAGAAGAGCATG 62.234 66.667 8.75 0.00 40.96 4.06
272 302 1.449726 GCAGATGCCGCCATTGATGA 61.450 55.000 0.00 0.00 34.31 2.92
286 316 5.847111 CATTGATGATGGTGAACAAGGAT 57.153 39.130 0.00 0.00 31.83 3.24
287 317 5.828747 CATTGATGATGGTGAACAAGGATC 58.171 41.667 0.00 0.00 31.83 3.36
288 318 4.573021 TGATGATGGTGAACAAGGATCA 57.427 40.909 0.00 0.00 0.00 2.92
289 319 4.520179 TGATGATGGTGAACAAGGATCAG 58.480 43.478 0.00 0.00 0.00 2.90
290 320 4.225717 TGATGATGGTGAACAAGGATCAGA 59.774 41.667 0.00 0.00 0.00 3.27
291 321 4.212143 TGATGGTGAACAAGGATCAGAG 57.788 45.455 0.00 0.00 0.00 3.35
292 322 3.584406 TGATGGTGAACAAGGATCAGAGT 59.416 43.478 0.00 0.00 0.00 3.24
293 323 4.777366 TGATGGTGAACAAGGATCAGAGTA 59.223 41.667 0.00 0.00 0.00 2.59
294 324 4.808414 TGGTGAACAAGGATCAGAGTAG 57.192 45.455 0.00 0.00 0.00 2.57
295 325 4.160329 TGGTGAACAAGGATCAGAGTAGT 58.840 43.478 0.00 0.00 0.00 2.73
296 326 4.021104 TGGTGAACAAGGATCAGAGTAGTG 60.021 45.833 0.00 0.00 0.00 2.74
297 327 4.499183 GTGAACAAGGATCAGAGTAGTGG 58.501 47.826 0.00 0.00 0.00 4.00
299 329 2.540383 ACAAGGATCAGAGTAGTGGCA 58.460 47.619 0.00 0.00 0.00 4.92
300 330 2.499289 ACAAGGATCAGAGTAGTGGCAG 59.501 50.000 0.00 0.00 0.00 4.85
301 331 2.499289 CAAGGATCAGAGTAGTGGCAGT 59.501 50.000 0.00 0.00 0.00 4.40
302 332 2.106566 AGGATCAGAGTAGTGGCAGTG 58.893 52.381 4.76 0.00 0.00 3.66
303 333 1.137872 GGATCAGAGTAGTGGCAGTGG 59.862 57.143 4.76 0.00 0.00 4.00
304 334 1.827969 GATCAGAGTAGTGGCAGTGGT 59.172 52.381 4.76 0.00 0.00 4.16
305 335 2.597578 TCAGAGTAGTGGCAGTGGTA 57.402 50.000 4.76 0.00 0.00 3.25
306 336 2.447443 TCAGAGTAGTGGCAGTGGTAG 58.553 52.381 4.76 0.00 0.00 3.18
307 337 2.171840 CAGAGTAGTGGCAGTGGTAGT 58.828 52.381 4.76 0.00 0.00 2.73
308 338 2.094494 CAGAGTAGTGGCAGTGGTAGTG 60.094 54.545 4.76 0.00 0.00 2.74
309 339 0.608640 AGTAGTGGCAGTGGTAGTGC 59.391 55.000 4.76 0.08 43.61 4.40
310 340 0.608640 GTAGTGGCAGTGGTAGTGCT 59.391 55.000 4.76 0.00 43.82 4.40
311 341 0.608130 TAGTGGCAGTGGTAGTGCTG 59.392 55.000 4.76 0.00 43.82 4.41
312 342 1.672356 GTGGCAGTGGTAGTGCTGG 60.672 63.158 8.37 0.00 43.82 4.85
327 357 2.932614 GTGCTGGTGCTATTACTGTGAG 59.067 50.000 0.00 0.00 40.48 3.51
334 377 2.159240 TGCTATTACTGTGAGCAGGACG 60.159 50.000 9.05 0.00 46.62 4.79
354 397 4.753662 TCTACCCCTCGTGCCGCT 62.754 66.667 0.00 0.00 0.00 5.52
355 398 3.771160 CTACCCCTCGTGCCGCTT 61.771 66.667 0.00 0.00 0.00 4.68
387 458 4.329545 TTGAGAGTGGCCGCACCC 62.330 66.667 20.59 3.15 37.83 4.61
424 512 4.373116 CACCCGCACGCACCTAGT 62.373 66.667 0.00 0.00 0.00 2.57
426 514 2.202703 CCCGCACGCACCTAGTAC 60.203 66.667 0.00 0.00 0.00 2.73
427 515 2.202703 CCGCACGCACCTAGTACC 60.203 66.667 0.00 0.00 0.00 3.34
428 516 2.578713 CGCACGCACCTAGTACCG 60.579 66.667 0.00 0.00 0.00 4.02
431 519 3.818787 ACGCACCTAGTACCGCCG 61.819 66.667 0.00 0.00 0.00 6.46
432 520 3.511595 CGCACCTAGTACCGCCGA 61.512 66.667 0.00 0.00 0.00 5.54
433 521 2.842256 CGCACCTAGTACCGCCGAT 61.842 63.158 0.00 0.00 0.00 4.18
434 522 1.007618 GCACCTAGTACCGCCGATC 60.008 63.158 0.00 0.00 0.00 3.69
435 523 1.658673 CACCTAGTACCGCCGATCC 59.341 63.158 0.00 0.00 0.00 3.36
436 524 1.895707 ACCTAGTACCGCCGATCCG 60.896 63.158 0.00 0.00 0.00 4.18
437 525 1.598962 CCTAGTACCGCCGATCCGA 60.599 63.158 0.00 0.00 0.00 4.55
587 684 3.498071 CCACCACCACCACCACCT 61.498 66.667 0.00 0.00 0.00 4.00
589 686 2.039831 ACCACCACCACCACCTCT 60.040 61.111 0.00 0.00 0.00 3.69
590 687 2.431683 CCACCACCACCACCTCTG 59.568 66.667 0.00 0.00 0.00 3.35
591 688 2.281761 CACCACCACCACCTCTGC 60.282 66.667 0.00 0.00 0.00 4.26
592 689 3.570212 ACCACCACCACCTCTGCC 61.570 66.667 0.00 0.00 0.00 4.85
624 721 4.026357 ACCCCCTCCACTCCCCTC 62.026 72.222 0.00 0.00 0.00 4.30
632 731 3.141488 CACTCCCCTCTCCGTCCG 61.141 72.222 0.00 0.00 0.00 4.79
639 738 2.408241 CCTCTCCGTCCGGTGACTC 61.408 68.421 0.00 0.00 39.47 3.36
674 784 3.382832 CGCCGGAGACAGGGAACT 61.383 66.667 5.05 0.00 46.44 3.01
675 785 2.579738 GCCGGAGACAGGGAACTC 59.420 66.667 5.05 0.00 40.21 3.01
678 788 3.300013 GGAGACAGGGAACTCCGG 58.700 66.667 0.00 0.00 42.25 5.14
725 852 3.977244 CGGCTTTGCGTTTGGGCT 61.977 61.111 0.00 0.00 0.00 5.19
731 858 2.022240 TTTGCGTTTGGGCTTGGGTC 62.022 55.000 0.00 0.00 0.00 4.46
854 987 4.796231 GACGCCAGCGACATCCGT 62.796 66.667 20.32 0.00 42.83 4.69
988 1132 2.184579 GGCGACTCCTTTCCTCGG 59.815 66.667 0.00 0.00 0.00 4.63
1049 1202 1.082954 TGAAGGAGGAGGGGAAGGG 59.917 63.158 0.00 0.00 0.00 3.95
1050 1203 1.694525 GAAGGAGGAGGGGAAGGGG 60.695 68.421 0.00 0.00 0.00 4.79
1051 1204 3.289454 AAGGAGGAGGGGAAGGGGG 62.289 68.421 0.00 0.00 0.00 5.40
1056 1209 3.878667 GAGGGGAAGGGGGCGATG 61.879 72.222 0.00 0.00 0.00 3.84
1698 1857 4.329545 ATGGTGTTCGCCGGCACT 62.330 61.111 28.98 0.00 36.03 4.40
2115 2773 1.188219 TGCCCAGTGTGGAGACTCTC 61.188 60.000 1.74 0.00 40.96 3.20
2148 2806 0.532573 TGATCTGCTCCGACAAGACC 59.467 55.000 0.00 0.00 0.00 3.85
2193 2851 0.514691 CAGTCTCAAAGCTCGTTGCC 59.485 55.000 0.00 0.00 44.23 4.52
2217 2875 0.967380 GTGATGCCCCAGGGAAAGTG 60.967 60.000 7.25 0.00 37.50 3.16
2241 2899 1.071471 CTTCAAGGTGGACGGCACT 59.929 57.895 0.00 0.00 0.00 4.40
2493 3153 5.128171 AGAATACGGTGGTGCTTACTTGATA 59.872 40.000 0.00 0.00 0.00 2.15
2496 3156 3.244284 ACGGTGGTGCTTACTTGATACAA 60.244 43.478 0.00 0.00 0.00 2.41
2547 3207 2.696707 TGGAGTTTAGGTCGTGTCAGTT 59.303 45.455 0.00 0.00 0.00 3.16
2606 3267 4.362470 TCTTAGGCTCCCATGATGATTG 57.638 45.455 0.00 0.00 0.00 2.67
2650 3311 2.490902 GGTCCTGGTTGAGAAAATGGGT 60.491 50.000 0.00 0.00 0.00 4.51
2745 3406 6.921857 TCGAGCTTAGCATAACATAACTTACC 59.078 38.462 7.07 0.00 0.00 2.85
2788 3452 2.076863 GCTGCTGAGTTAACCGACAAT 58.923 47.619 0.88 0.00 0.00 2.71
2909 3573 7.040201 CGTATGAGGAAATCAATGGGAATCATT 60.040 37.037 0.00 0.00 46.24 2.57
2992 3656 0.035820 TACGGCCATTTCCCACTGAC 60.036 55.000 2.24 0.00 0.00 3.51
3015 3680 7.858382 TGACATGTTAAATAAAATTATCCCGCG 59.142 33.333 0.00 0.00 0.00 6.46
3023 3688 7.675962 AATAAAATTATCCCGCGTTATAGCA 57.324 32.000 4.92 0.00 36.85 3.49
3024 3689 5.352643 AAAATTATCCCGCGTTATAGCAC 57.647 39.130 4.92 0.00 36.85 4.40
3025 3690 2.443887 TTATCCCGCGTTATAGCACC 57.556 50.000 4.92 0.00 36.85 5.01
3026 3691 1.330234 TATCCCGCGTTATAGCACCA 58.670 50.000 4.92 0.00 36.85 4.17
3121 3787 2.495669 GCTGGAGAGGAGTAGCCATATC 59.504 54.545 0.00 0.00 40.02 1.63
3127 3793 2.495669 GAGGAGTAGCCATATCCAGCTC 59.504 54.545 0.00 0.00 40.56 4.09
3148 3814 0.478072 AGGATGGTTCAGTTGTGCCA 59.522 50.000 0.00 0.00 35.28 4.92
3181 3847 7.674120 AGAAATCAAGAAAAGCTATTTTGGCT 58.326 30.769 0.00 0.00 38.74 4.75
3397 4065 8.050778 TCCTCATTGTGGATATGTTTTGTAAC 57.949 34.615 3.33 0.00 34.75 2.50
3410 4078 3.921119 TTTGTAACCAATGCTGCTCTG 57.079 42.857 0.00 0.00 0.00 3.35
3475 4143 5.957798 ACCATGATTTGTCAGTATGCTTTG 58.042 37.500 0.00 0.00 34.76 2.77
3479 4147 3.921119 TTTGTCAGTATGCTTTGCTGG 57.079 42.857 5.73 0.00 38.48 4.85
3496 4164 4.476297 TGCTGGATATGATTCCTTGCAAT 58.524 39.130 0.00 0.00 40.35 3.56
3732 4407 5.788450 CACTTGAGGATAAGAAGACACTGT 58.212 41.667 0.00 0.00 0.00 3.55
3758 4433 1.217942 AGGAAAGGTGGCCTTCTGTTT 59.782 47.619 3.32 2.15 43.92 2.83
3818 4493 5.290386 AGACTGTTAAAAGAAGACGGTGAG 58.710 41.667 0.00 0.00 33.29 3.51
3899 4574 5.904984 TTGGTATAGCAATGGGTATCACT 57.095 39.130 13.22 0.00 38.57 3.41
4045 4734 2.334838 CGTACAACCTTACACCAGAGC 58.665 52.381 0.00 0.00 0.00 4.09
4047 4736 0.756903 ACAACCTTACACCAGAGCGT 59.243 50.000 0.00 0.00 0.00 5.07
4074 4763 2.364972 AACCACAAGTTTAGCAGGCT 57.635 45.000 0.00 0.00 33.89 4.58
4105 4794 6.747414 ACATACCTAGGCTGATCACAAATA 57.253 37.500 16.73 0.00 0.00 1.40
4137 4826 2.617250 TGCGCTGTTGCAGAATTAAG 57.383 45.000 9.73 0.00 40.62 1.85
4145 4834 6.442112 GCTGTTGCAGAATTAAGAGAAAACT 58.558 36.000 0.00 0.00 39.41 2.66
4156 4845 6.503560 TTAAGAGAAAACTAGGAACCACCA 57.496 37.500 0.00 0.00 42.04 4.17
4157 4846 5.584551 AAGAGAAAACTAGGAACCACCAT 57.415 39.130 0.00 0.00 42.04 3.55
4158 4847 5.167303 AGAGAAAACTAGGAACCACCATC 57.833 43.478 0.00 0.00 42.04 3.51
4159 4848 4.597507 AGAGAAAACTAGGAACCACCATCA 59.402 41.667 0.00 0.00 42.04 3.07
4160 4849 4.652822 AGAAAACTAGGAACCACCATCAC 58.347 43.478 0.00 0.00 42.04 3.06
4161 4850 4.104102 AGAAAACTAGGAACCACCATCACA 59.896 41.667 0.00 0.00 42.04 3.58
4162 4851 4.657814 AAACTAGGAACCACCATCACAT 57.342 40.909 0.00 0.00 42.04 3.21
4165 4854 5.975988 ACTAGGAACCACCATCACATATT 57.024 39.130 0.00 0.00 42.04 1.28
4225 4914 9.012103 TGCTAACCCCTTTACAAGGTAGCATAT 62.012 40.741 16.66 0.00 46.90 1.78
4310 5000 7.390027 TCTTTCATTGGTTTTCCTGACAAAAA 58.610 30.769 0.00 0.00 41.38 1.94
4311 5001 6.976636 TTCATTGGTTTTCCTGACAAAAAC 57.023 33.333 6.86 6.86 42.93 2.43
4312 5002 6.293004 TCATTGGTTTTCCTGACAAAAACT 57.707 33.333 12.81 0.00 43.12 2.66
4313 5003 7.411486 TCATTGGTTTTCCTGACAAAAACTA 57.589 32.000 12.81 6.48 43.12 2.24
4315 5005 8.482128 TCATTGGTTTTCCTGACAAAAACTATT 58.518 29.630 12.81 4.03 43.12 1.73
4316 5006 8.550376 CATTGGTTTTCCTGACAAAAACTATTG 58.450 33.333 12.81 10.33 43.12 1.90
4317 5007 7.411486 TGGTTTTCCTGACAAAAACTATTGA 57.589 32.000 12.81 0.00 43.12 2.57
4318 5008 8.017418 TGGTTTTCCTGACAAAAACTATTGAT 57.983 30.769 12.81 0.00 43.12 2.57
4319 5009 9.137459 TGGTTTTCCTGACAAAAACTATTGATA 57.863 29.630 12.81 0.00 43.12 2.15
4416 5107 3.125316 CCTCGCCTGTTACTGCTTTTAAG 59.875 47.826 0.00 0.00 0.00 1.85
4433 5124 6.930068 TTTTAAGCTAACTACTCCCTCTGT 57.070 37.500 0.00 0.00 0.00 3.41
4434 5125 8.064336 CTTTTAAGCTAACTACTCCCTCTGTA 57.936 38.462 0.00 0.00 0.00 2.74
4435 5126 8.426569 TTTTAAGCTAACTACTCCCTCTGTAA 57.573 34.615 0.00 0.00 0.00 2.41
4436 5127 8.426569 TTTAAGCTAACTACTCCCTCTGTAAA 57.573 34.615 0.00 0.00 0.00 2.01
4437 5128 5.918426 AGCTAACTACTCCCTCTGTAAAC 57.082 43.478 0.00 0.00 0.00 2.01
4438 5129 5.581975 AGCTAACTACTCCCTCTGTAAACT 58.418 41.667 0.00 0.00 0.00 2.66
4439 5130 6.729428 AGCTAACTACTCCCTCTGTAAACTA 58.271 40.000 0.00 0.00 0.00 2.24
4440 5131 7.180663 AGCTAACTACTCCCTCTGTAAACTAA 58.819 38.462 0.00 0.00 0.00 2.24
4441 5132 7.840210 AGCTAACTACTCCCTCTGTAAACTAAT 59.160 37.037 0.00 0.00 0.00 1.73
4442 5133 7.921745 GCTAACTACTCCCTCTGTAAACTAATG 59.078 40.741 0.00 0.00 0.00 1.90
4443 5134 7.793948 AACTACTCCCTCTGTAAACTAATGT 57.206 36.000 0.00 0.00 0.00 2.71
4444 5135 8.890410 AACTACTCCCTCTGTAAACTAATGTA 57.110 34.615 0.00 0.00 0.00 2.29
4445 5136 8.890410 ACTACTCCCTCTGTAAACTAATGTAA 57.110 34.615 0.00 0.00 0.00 2.41
4446 5137 8.968969 ACTACTCCCTCTGTAAACTAATGTAAG 58.031 37.037 0.00 0.00 0.00 2.34
4447 5138 9.186837 CTACTCCCTCTGTAAACTAATGTAAGA 57.813 37.037 0.00 0.00 0.00 2.10
4448 5139 8.611051 ACTCCCTCTGTAAACTAATGTAAGAT 57.389 34.615 0.00 0.00 0.00 2.40
4449 5140 8.697292 ACTCCCTCTGTAAACTAATGTAAGATC 58.303 37.037 0.00 0.00 0.00 2.75
4450 5141 7.713750 TCCCTCTGTAAACTAATGTAAGATCG 58.286 38.462 0.00 0.00 0.00 3.69
4451 5142 7.341256 TCCCTCTGTAAACTAATGTAAGATCGT 59.659 37.037 0.00 0.00 0.00 3.73
4452 5143 7.980099 CCCTCTGTAAACTAATGTAAGATCGTT 59.020 37.037 0.00 0.00 0.00 3.85
4453 5144 9.367444 CCTCTGTAAACTAATGTAAGATCGTTT 57.633 33.333 0.00 0.00 0.00 3.60
4504 5195 9.601217 CGATCTTATATTAATTTACAGAGGGGG 57.399 37.037 0.00 0.00 0.00 5.40
4509 5200 2.990740 AATTTACAGAGGGGGTGCAA 57.009 45.000 0.00 0.00 0.00 4.08
4585 5283 5.096849 GCACGACTTTAGAGGTTCTAAGAG 58.903 45.833 0.00 3.75 39.80 2.85
4640 5340 2.363359 AGCTTATAATTTGGGCAGCAGC 59.637 45.455 0.00 0.00 41.10 5.25
4810 5511 2.158780 AGCCTTGCTCCCACTTCTT 58.841 52.632 0.00 0.00 30.62 2.52
4899 5630 1.661341 GGCATGAGTAGGACTGCTTG 58.339 55.000 0.00 0.00 35.03 4.01
4903 5634 0.321671 TGAGTAGGACTGCTTGTGCC 59.678 55.000 0.00 0.00 37.77 5.01
4906 5637 1.065854 AGTAGGACTGCTTGTGCCATC 60.066 52.381 0.00 0.00 37.77 3.51
4942 5674 6.219417 ACATTCAGTTGTTGGAAAACATGA 57.781 33.333 0.00 0.00 32.01 3.07
5089 5838 5.530915 TGTTCAACTTCTGTGGGTAAATCTG 59.469 40.000 0.00 0.00 0.00 2.90
5222 5972 6.984474 TCTGTTCCGTTATCTGGTAATTGATC 59.016 38.462 0.00 0.00 0.00 2.92
5223 5973 6.645306 TGTTCCGTTATCTGGTAATTGATCA 58.355 36.000 0.00 0.00 0.00 2.92
5252 6002 7.275183 CACATATCTGTTTGATCCCTTGTAGA 58.725 38.462 0.00 0.00 36.65 2.59
5275 6026 8.016301 AGAAATCTCTGCCTTTCTTTCTTTTT 57.984 30.769 0.00 0.00 38.27 1.94
5296 6047 8.810652 TTTTTGAGATTAATTTTTCTCACCGG 57.189 30.769 15.71 0.00 45.95 5.28
5544 6296 1.591703 CTGCGACTACTTCCAGGCA 59.408 57.895 0.00 0.00 0.00 4.75
5725 6489 1.360551 CTCATCCTCTACGTGCCGG 59.639 63.158 0.00 0.00 0.00 6.13
5748 6512 1.661197 CGCGCAAGTGTTTGGCATT 60.661 52.632 8.75 0.00 44.45 3.56
5766 6530 2.437359 GTGCCGCTCAGCCTGAAT 60.437 61.111 0.00 0.00 0.00 2.57
5769 6533 1.746615 GCCGCTCAGCCTGAATGAA 60.747 57.895 0.00 0.00 0.00 2.57
5784 6548 0.395311 ATGAATGGCTCCTGGTGCTG 60.395 55.000 19.07 0.00 0.00 4.41
5790 6554 2.359602 CTCCTGGTGCTGCTGGTG 60.360 66.667 0.00 0.00 0.00 4.17
5839 6603 1.371183 CTCAAGTTCGTGGGCAGGA 59.629 57.895 0.00 0.00 0.00 3.86
5987 6756 4.545208 TGTTCAGAATGTTCGGACCATA 57.455 40.909 0.00 0.00 37.40 2.74
6011 6780 1.072505 GTGGTCGCCAAAGGAAGGA 59.927 57.895 0.00 0.00 34.18 3.36
6199 7012 1.552719 GGTAGTGGTCCCTTGGTCTCT 60.553 57.143 0.00 0.00 0.00 3.10
6238 7051 4.722194 CTTTGTTTTTGCTGCGAGCTATA 58.278 39.130 9.12 0.00 42.97 1.31
6239 7052 4.963276 TTGTTTTTGCTGCGAGCTATAT 57.037 36.364 9.12 0.00 42.97 0.86
6249 7062 2.135933 GCGAGCTATATTTGCCGAACT 58.864 47.619 0.00 0.00 0.00 3.01
6269 7082 7.011950 CCGAACTGGAGTGCAAATAATTATACA 59.988 37.037 0.00 0.00 42.00 2.29
6295 7519 0.671251 TTTGCGTAAAAGTGCTGGGG 59.329 50.000 0.00 0.00 0.00 4.96
6304 7528 0.539438 AAGTGCTGGGGATTTGCGAA 60.539 50.000 0.00 0.00 0.00 4.70
6307 7531 1.678970 GCTGGGGATTTGCGAAGGT 60.679 57.895 0.00 0.00 0.00 3.50
6308 7532 1.250840 GCTGGGGATTTGCGAAGGTT 61.251 55.000 0.00 0.00 0.00 3.50
6320 7544 2.358737 AAGGTTGGGAAGCGAGCG 60.359 61.111 0.00 0.00 0.00 5.03
6325 7549 2.398554 TTGGGAAGCGAGCGAATGC 61.399 57.895 0.00 0.00 43.24 3.56
6335 7559 2.401195 GCGAATGCGAGTTGAGCC 59.599 61.111 0.00 0.00 40.82 4.70
6336 7560 2.697425 CGAATGCGAGTTGAGCCG 59.303 61.111 0.00 0.00 40.82 5.52
6337 7561 1.805539 CGAATGCGAGTTGAGCCGA 60.806 57.895 0.00 0.00 40.82 5.54
6338 7562 1.710339 GAATGCGAGTTGAGCCGAC 59.290 57.895 0.00 0.00 0.00 4.79
6339 7563 0.737715 GAATGCGAGTTGAGCCGACT 60.738 55.000 0.00 0.00 0.00 4.18
6340 7564 0.737715 AATGCGAGTTGAGCCGACTC 60.738 55.000 10.85 10.85 43.76 3.36
6380 7604 3.157932 CTTCTAGAAGGCTCCAGTTCG 57.842 52.381 22.67 0.00 34.87 3.95
6390 7614 1.947456 GCTCCAGTTCGGTTTTCACTT 59.053 47.619 0.00 0.00 35.57 3.16
6392 7616 2.943033 CTCCAGTTCGGTTTTCACTTGT 59.057 45.455 0.00 0.00 35.57 3.16
6396 7620 4.561213 CCAGTTCGGTTTTCACTTGTTTTC 59.439 41.667 0.00 0.00 0.00 2.29
6411 7635 7.064016 TCACTTGTTTTCCATTTTCTTTTTCCG 59.936 33.333 0.00 0.00 0.00 4.30
6414 7638 4.681074 TTTCCATTTTCTTTTTCCGGCT 57.319 36.364 0.00 0.00 0.00 5.52
6437 7661 8.357402 GGCTGTTTCTTTTACCTGATTTCTTTA 58.643 33.333 0.00 0.00 0.00 1.85
6546 7770 9.874205 AATTTTCGAAATATGTTCATGTTCCAT 57.126 25.926 12.12 0.00 0.00 3.41
6549 7773 8.686397 TTCGAAATATGTTCATGTTCCATTTG 57.314 30.769 0.00 0.00 0.00 2.32
6773 8000 2.967615 GCCCGAGCGCTGGATAAC 60.968 66.667 21.98 0.53 0.00 1.89
6782 8009 1.017387 CGCTGGATAACTTGCCTTCC 58.983 55.000 0.00 0.00 0.00 3.46
6783 8010 1.017387 GCTGGATAACTTGCCTTCCG 58.983 55.000 0.00 0.00 0.00 4.30
6804 8031 2.329379 CGCCGTAGAATTAGGATGCTC 58.671 52.381 0.00 0.00 0.00 4.26
6819 8046 3.516615 GATGCTCATAACCGCTAGATCC 58.483 50.000 0.00 0.00 0.00 3.36
6851 8078 1.000274 GCCATCCCTTTGTCACACAAC 60.000 52.381 0.00 0.00 37.90 3.32
6878 8105 2.061495 CACGCGCAACTTCGTTTCG 61.061 57.895 5.73 0.00 36.73 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.846602 CTTTTGCGCACTGCCCACC 62.847 63.158 11.12 0.00 45.60 4.61
15 16 2.355009 CTTTTGCGCACTGCCCAC 60.355 61.111 11.12 0.00 45.60 4.61
16 17 3.604667 CCTTTTGCGCACTGCCCA 61.605 61.111 11.12 0.00 45.60 5.36
17 18 4.362476 CCCTTTTGCGCACTGCCC 62.362 66.667 11.12 0.00 45.60 5.36
18 19 4.362476 CCCCTTTTGCGCACTGCC 62.362 66.667 11.12 0.00 45.60 4.85
19 20 4.362476 CCCCCTTTTGCGCACTGC 62.362 66.667 11.12 0.00 46.70 4.40
20 21 4.362476 GCCCCCTTTTGCGCACTG 62.362 66.667 11.12 2.54 0.00 3.66
26 27 4.986708 TGACCCGCCCCCTTTTGC 62.987 66.667 0.00 0.00 0.00 3.68
27 28 2.203567 TTGACCCGCCCCCTTTTG 60.204 61.111 0.00 0.00 0.00 2.44
28 29 2.117423 CTTGACCCGCCCCCTTTT 59.883 61.111 0.00 0.00 0.00 2.27
29 30 3.979497 CCTTGACCCGCCCCCTTT 61.979 66.667 0.00 0.00 0.00 3.11
34 35 4.344865 TTCAGCCTTGACCCGCCC 62.345 66.667 0.00 0.00 31.71 6.13
35 36 2.747855 CTTCAGCCTTGACCCGCC 60.748 66.667 0.00 0.00 31.71 6.13
36 37 3.435186 GCTTCAGCCTTGACCCGC 61.435 66.667 0.00 0.00 31.71 6.13
37 38 3.121030 CGCTTCAGCCTTGACCCG 61.121 66.667 0.00 0.00 37.91 5.28
38 39 1.301677 CTTCGCTTCAGCCTTGACCC 61.302 60.000 0.00 0.00 37.91 4.46
39 40 1.301677 CCTTCGCTTCAGCCTTGACC 61.302 60.000 0.00 0.00 37.91 4.02
40 41 0.320771 TCCTTCGCTTCAGCCTTGAC 60.321 55.000 0.00 0.00 37.91 3.18
41 42 0.615331 ATCCTTCGCTTCAGCCTTGA 59.385 50.000 0.00 0.00 37.91 3.02
42 43 1.457346 AATCCTTCGCTTCAGCCTTG 58.543 50.000 0.00 0.00 37.91 3.61
43 44 3.567478 ATAATCCTTCGCTTCAGCCTT 57.433 42.857 0.00 0.00 37.91 4.35
44 45 3.135530 AGAATAATCCTTCGCTTCAGCCT 59.864 43.478 0.00 0.00 37.91 4.58
45 46 3.249559 CAGAATAATCCTTCGCTTCAGCC 59.750 47.826 0.00 0.00 37.91 4.85
46 47 3.249559 CCAGAATAATCCTTCGCTTCAGC 59.750 47.826 0.00 0.00 37.78 4.26
47 48 3.812053 CCCAGAATAATCCTTCGCTTCAG 59.188 47.826 0.00 0.00 0.00 3.02
48 49 3.433598 CCCCAGAATAATCCTTCGCTTCA 60.434 47.826 0.00 0.00 0.00 3.02
49 50 3.142174 CCCCAGAATAATCCTTCGCTTC 58.858 50.000 0.00 0.00 0.00 3.86
50 51 2.509964 ACCCCAGAATAATCCTTCGCTT 59.490 45.455 0.00 0.00 0.00 4.68
51 52 2.104963 GACCCCAGAATAATCCTTCGCT 59.895 50.000 0.00 0.00 0.00 4.93
52 53 2.158813 TGACCCCAGAATAATCCTTCGC 60.159 50.000 0.00 0.00 0.00 4.70
53 54 3.134804 ACTGACCCCAGAATAATCCTTCG 59.865 47.826 0.00 0.00 43.02 3.79
54 55 4.779993 ACTGACCCCAGAATAATCCTTC 57.220 45.455 0.00 0.00 43.02 3.46
55 56 4.384208 CGAACTGACCCCAGAATAATCCTT 60.384 45.833 0.00 0.00 43.02 3.36
56 57 3.134804 CGAACTGACCCCAGAATAATCCT 59.865 47.826 0.00 0.00 43.02 3.24
57 58 3.134081 TCGAACTGACCCCAGAATAATCC 59.866 47.826 0.00 0.00 43.02 3.01
58 59 4.402056 TCGAACTGACCCCAGAATAATC 57.598 45.455 0.00 0.00 43.02 1.75
59 60 4.384208 CCTTCGAACTGACCCCAGAATAAT 60.384 45.833 0.00 0.00 43.02 1.28
60 61 3.055385 CCTTCGAACTGACCCCAGAATAA 60.055 47.826 0.00 0.00 43.02 1.40
61 62 2.500098 CCTTCGAACTGACCCCAGAATA 59.500 50.000 0.00 0.00 43.02 1.75
62 63 1.279271 CCTTCGAACTGACCCCAGAAT 59.721 52.381 0.00 0.00 43.02 2.40
63 64 0.685097 CCTTCGAACTGACCCCAGAA 59.315 55.000 0.00 0.00 43.02 3.02
64 65 0.178944 TCCTTCGAACTGACCCCAGA 60.179 55.000 0.00 0.00 43.02 3.86
65 66 0.905357 ATCCTTCGAACTGACCCCAG 59.095 55.000 0.00 0.00 45.76 4.45
66 67 2.108168 CTATCCTTCGAACTGACCCCA 58.892 52.381 0.00 0.00 0.00 4.96
67 68 2.385803 TCTATCCTTCGAACTGACCCC 58.614 52.381 0.00 0.00 0.00 4.95
68 69 3.637229 TGATCTATCCTTCGAACTGACCC 59.363 47.826 0.00 0.00 0.00 4.46
69 70 4.794655 GCTGATCTATCCTTCGAACTGACC 60.795 50.000 0.00 0.00 0.00 4.02
70 71 4.295051 GCTGATCTATCCTTCGAACTGAC 58.705 47.826 0.00 0.00 0.00 3.51
71 72 3.003793 CGCTGATCTATCCTTCGAACTGA 59.996 47.826 0.00 0.00 0.00 3.41
72 73 3.003793 TCGCTGATCTATCCTTCGAACTG 59.996 47.826 0.00 0.00 0.00 3.16
73 74 3.003897 GTCGCTGATCTATCCTTCGAACT 59.996 47.826 0.00 0.00 0.00 3.01
74 75 3.301706 GTCGCTGATCTATCCTTCGAAC 58.698 50.000 0.00 0.00 0.00 3.95
75 76 2.031944 CGTCGCTGATCTATCCTTCGAA 60.032 50.000 0.00 0.00 0.00 3.71
76 77 1.531578 CGTCGCTGATCTATCCTTCGA 59.468 52.381 0.00 0.00 0.00 3.71
77 78 1.264557 ACGTCGCTGATCTATCCTTCG 59.735 52.381 0.00 0.00 0.00 3.79
78 79 2.605823 CCACGTCGCTGATCTATCCTTC 60.606 54.545 0.00 0.00 0.00 3.46
79 80 1.338337 CCACGTCGCTGATCTATCCTT 59.662 52.381 0.00 0.00 0.00 3.36
80 81 0.955178 CCACGTCGCTGATCTATCCT 59.045 55.000 0.00 0.00 0.00 3.24
81 82 0.952280 TCCACGTCGCTGATCTATCC 59.048 55.000 0.00 0.00 0.00 2.59
82 83 2.590073 CATCCACGTCGCTGATCTATC 58.410 52.381 0.00 0.00 0.00 2.08
83 84 1.270826 CCATCCACGTCGCTGATCTAT 59.729 52.381 0.00 0.00 0.00 1.98
84 85 0.668535 CCATCCACGTCGCTGATCTA 59.331 55.000 0.00 0.00 0.00 1.98
85 86 1.037579 TCCATCCACGTCGCTGATCT 61.038 55.000 0.00 0.00 0.00 2.75
86 87 0.032678 ATCCATCCACGTCGCTGATC 59.967 55.000 0.00 0.00 0.00 2.92
87 88 0.249615 CATCCATCCACGTCGCTGAT 60.250 55.000 0.00 0.00 0.00 2.90
88 89 1.141665 CATCCATCCACGTCGCTGA 59.858 57.895 0.00 0.00 0.00 4.26
89 90 1.884464 CCATCCATCCACGTCGCTG 60.884 63.158 0.00 0.00 0.00 5.18
90 91 2.021068 CTCCATCCATCCACGTCGCT 62.021 60.000 0.00 0.00 0.00 4.93
91 92 1.592669 CTCCATCCATCCACGTCGC 60.593 63.158 0.00 0.00 0.00 5.19
92 93 1.068083 CCTCCATCCATCCACGTCG 59.932 63.158 0.00 0.00 0.00 5.12
93 94 0.830648 TTCCTCCATCCATCCACGTC 59.169 55.000 0.00 0.00 0.00 4.34
94 95 1.065418 GTTTCCTCCATCCATCCACGT 60.065 52.381 0.00 0.00 0.00 4.49
95 96 1.668419 GTTTCCTCCATCCATCCACG 58.332 55.000 0.00 0.00 0.00 4.94
96 97 1.668419 CGTTTCCTCCATCCATCCAC 58.332 55.000 0.00 0.00 0.00 4.02
97 98 0.107214 GCGTTTCCTCCATCCATCCA 60.107 55.000 0.00 0.00 0.00 3.41
98 99 0.819666 GGCGTTTCCTCCATCCATCC 60.820 60.000 0.00 0.00 0.00 3.51
99 100 0.181350 AGGCGTTTCCTCCATCCATC 59.819 55.000 0.00 0.00 43.20 3.51
100 101 2.311287 AGGCGTTTCCTCCATCCAT 58.689 52.632 0.00 0.00 43.20 3.41
101 102 3.820425 AGGCGTTTCCTCCATCCA 58.180 55.556 0.00 0.00 43.20 3.41
109 110 2.358247 TCAAGGCGAGGCGTTTCC 60.358 61.111 0.00 0.00 34.33 3.13
110 111 0.949105 TTCTCAAGGCGAGGCGTTTC 60.949 55.000 0.00 0.00 42.55 2.78
111 112 1.070786 TTCTCAAGGCGAGGCGTTT 59.929 52.632 0.00 0.00 42.55 3.60
112 113 1.668151 GTTCTCAAGGCGAGGCGTT 60.668 57.895 0.00 0.00 42.55 4.84
113 114 2.048127 GTTCTCAAGGCGAGGCGT 60.048 61.111 0.00 0.00 42.55 5.68
114 115 3.181967 CGTTCTCAAGGCGAGGCG 61.182 66.667 0.00 0.00 42.55 5.52
115 116 3.491652 GCGTTCTCAAGGCGAGGC 61.492 66.667 0.00 0.00 42.55 4.70
116 117 2.788191 AAGGCGTTCTCAAGGCGAGG 62.788 60.000 0.00 0.00 42.55 4.63
117 118 1.355066 GAAGGCGTTCTCAAGGCGAG 61.355 60.000 11.82 0.00 42.87 5.03
118 119 1.374252 GAAGGCGTTCTCAAGGCGA 60.374 57.895 11.82 0.00 42.87 5.54
119 120 2.391389 GGAAGGCGTTCTCAAGGCG 61.391 63.158 17.90 0.00 42.87 5.52
120 121 1.003233 AGGAAGGCGTTCTCAAGGC 60.003 57.895 17.90 1.38 41.32 4.35
121 122 0.321671 TGAGGAAGGCGTTCTCAAGG 59.678 55.000 17.90 0.00 32.72 3.61
122 123 2.275318 GATGAGGAAGGCGTTCTCAAG 58.725 52.381 15.48 0.00 32.72 3.02
123 124 1.623311 TGATGAGGAAGGCGTTCTCAA 59.377 47.619 15.48 0.00 32.72 3.02
124 125 1.266178 TGATGAGGAAGGCGTTCTCA 58.734 50.000 13.92 13.92 32.72 3.27
125 126 2.386661 TTGATGAGGAAGGCGTTCTC 57.613 50.000 17.90 13.36 32.72 2.87
126 127 2.636830 CATTGATGAGGAAGGCGTTCT 58.363 47.619 17.90 5.13 32.72 3.01
127 128 1.064654 GCATTGATGAGGAAGGCGTTC 59.935 52.381 10.68 10.68 0.00 3.95
128 129 1.098050 GCATTGATGAGGAAGGCGTT 58.902 50.000 0.00 0.00 0.00 4.84
129 130 0.035152 TGCATTGATGAGGAAGGCGT 60.035 50.000 0.00 0.00 32.83 5.68
130 131 1.315690 ATGCATTGATGAGGAAGGCG 58.684 50.000 0.00 0.00 32.83 5.52
131 132 3.492137 GGAAATGCATTGATGAGGAAGGC 60.492 47.826 13.82 0.00 0.00 4.35
132 133 3.958798 AGGAAATGCATTGATGAGGAAGG 59.041 43.478 13.82 0.00 0.00 3.46
133 134 5.593679 AAGGAAATGCATTGATGAGGAAG 57.406 39.130 13.82 0.00 0.00 3.46
134 135 5.337733 CCAAAGGAAATGCATTGATGAGGAA 60.338 40.000 13.82 0.00 0.00 3.36
135 136 4.160814 CCAAAGGAAATGCATTGATGAGGA 59.839 41.667 13.82 0.00 0.00 3.71
136 137 4.439057 CCAAAGGAAATGCATTGATGAGG 58.561 43.478 13.82 7.61 0.00 3.86
137 138 3.869246 GCCAAAGGAAATGCATTGATGAG 59.131 43.478 13.82 2.10 0.00 2.90
138 139 3.261137 TGCCAAAGGAAATGCATTGATGA 59.739 39.130 13.82 0.00 0.00 2.92
139 140 3.372822 GTGCCAAAGGAAATGCATTGATG 59.627 43.478 13.82 7.79 35.96 3.07
140 141 3.602483 GTGCCAAAGGAAATGCATTGAT 58.398 40.909 13.82 0.00 35.96 2.57
141 142 2.609984 CGTGCCAAAGGAAATGCATTGA 60.610 45.455 13.82 0.00 35.96 2.57
142 143 1.727880 CGTGCCAAAGGAAATGCATTG 59.272 47.619 13.82 0.00 35.96 2.82
143 144 1.617850 TCGTGCCAAAGGAAATGCATT 59.382 42.857 5.99 5.99 35.96 3.56
144 145 1.203052 CTCGTGCCAAAGGAAATGCAT 59.797 47.619 0.00 0.00 35.96 3.96
145 146 0.597568 CTCGTGCCAAAGGAAATGCA 59.402 50.000 0.00 0.00 0.00 3.96
146 147 0.109132 CCTCGTGCCAAAGGAAATGC 60.109 55.000 0.00 0.00 34.35 3.56
147 148 1.470098 CTCCTCGTGCCAAAGGAAATG 59.530 52.381 0.00 0.00 41.09 2.32
148 149 1.073923 ACTCCTCGTGCCAAAGGAAAT 59.926 47.619 0.00 0.00 41.09 2.17
149 150 0.472471 ACTCCTCGTGCCAAAGGAAA 59.528 50.000 0.00 0.00 41.09 3.13
150 151 0.034896 GACTCCTCGTGCCAAAGGAA 59.965 55.000 0.00 0.00 41.09 3.36
151 152 1.671742 GACTCCTCGTGCCAAAGGA 59.328 57.895 0.00 0.00 39.38 3.36
152 153 1.738099 CGACTCCTCGTGCCAAAGG 60.738 63.158 0.00 0.00 35.00 3.11
153 154 1.738099 CCGACTCCTCGTGCCAAAG 60.738 63.158 0.00 0.00 38.32 2.77
154 155 2.342279 CCGACTCCTCGTGCCAAA 59.658 61.111 0.00 0.00 38.32 3.28
155 156 2.915659 ACCGACTCCTCGTGCCAA 60.916 61.111 0.00 0.00 38.32 4.52
156 157 3.371063 GACCGACTCCTCGTGCCA 61.371 66.667 0.00 0.00 38.32 4.92
157 158 4.131088 GGACCGACTCCTCGTGCC 62.131 72.222 0.00 0.00 38.32 5.01
158 159 4.477975 CGGACCGACTCCTCGTGC 62.478 72.222 8.64 0.00 38.32 5.34
159 160 3.812019 CCGGACCGACTCCTCGTG 61.812 72.222 17.49 0.00 38.32 4.35
162 163 3.827898 CAGCCGGACCGACTCCTC 61.828 72.222 17.49 0.00 36.80 3.71
272 302 4.780021 ACTACTCTGATCCTTGTTCACCAT 59.220 41.667 0.00 0.00 0.00 3.55
275 305 4.499183 CCACTACTCTGATCCTTGTTCAC 58.501 47.826 0.00 0.00 0.00 3.18
276 306 3.055819 GCCACTACTCTGATCCTTGTTCA 60.056 47.826 0.00 0.00 0.00 3.18
280 310 2.499289 ACTGCCACTACTCTGATCCTTG 59.501 50.000 0.00 0.00 0.00 3.61
281 311 2.499289 CACTGCCACTACTCTGATCCTT 59.501 50.000 0.00 0.00 0.00 3.36
282 312 2.106566 CACTGCCACTACTCTGATCCT 58.893 52.381 0.00 0.00 0.00 3.24
284 314 1.827969 ACCACTGCCACTACTCTGATC 59.172 52.381 0.00 0.00 0.00 2.92
285 315 1.944177 ACCACTGCCACTACTCTGAT 58.056 50.000 0.00 0.00 0.00 2.90
286 316 2.225041 ACTACCACTGCCACTACTCTGA 60.225 50.000 0.00 0.00 0.00 3.27
287 317 2.094494 CACTACCACTGCCACTACTCTG 60.094 54.545 0.00 0.00 0.00 3.35
288 318 2.171840 CACTACCACTGCCACTACTCT 58.828 52.381 0.00 0.00 0.00 3.24
289 319 1.404315 GCACTACCACTGCCACTACTC 60.404 57.143 0.00 0.00 0.00 2.59
290 320 0.608640 GCACTACCACTGCCACTACT 59.391 55.000 0.00 0.00 0.00 2.57
291 321 0.608640 AGCACTACCACTGCCACTAC 59.391 55.000 0.00 0.00 35.01 2.73
292 322 0.608130 CAGCACTACCACTGCCACTA 59.392 55.000 0.00 0.00 35.01 2.74
293 323 1.372683 CAGCACTACCACTGCCACT 59.627 57.895 0.00 0.00 35.01 4.00
294 324 1.672356 CCAGCACTACCACTGCCAC 60.672 63.158 0.00 0.00 35.01 5.01
295 325 2.146724 ACCAGCACTACCACTGCCA 61.147 57.895 0.00 0.00 35.01 4.92
296 326 1.672356 CACCAGCACTACCACTGCC 60.672 63.158 0.00 0.00 35.01 4.85
297 327 2.328099 GCACCAGCACTACCACTGC 61.328 63.158 0.00 0.00 41.58 4.40
299 329 1.573108 ATAGCACCAGCACTACCACT 58.427 50.000 0.00 0.00 45.49 4.00
300 330 2.403252 AATAGCACCAGCACTACCAC 57.597 50.000 0.00 0.00 45.49 4.16
301 331 3.104512 AGTAATAGCACCAGCACTACCA 58.895 45.455 0.00 0.00 45.49 3.25
302 332 3.118738 ACAGTAATAGCACCAGCACTACC 60.119 47.826 0.00 0.00 45.49 3.18
303 333 3.865745 CACAGTAATAGCACCAGCACTAC 59.134 47.826 0.00 0.00 45.49 2.73
304 334 3.767131 TCACAGTAATAGCACCAGCACTA 59.233 43.478 0.00 0.00 45.49 2.74
305 335 2.567169 TCACAGTAATAGCACCAGCACT 59.433 45.455 0.00 0.00 45.49 4.40
306 336 2.932614 CTCACAGTAATAGCACCAGCAC 59.067 50.000 0.00 0.00 45.49 4.40
307 337 2.677902 GCTCACAGTAATAGCACCAGCA 60.678 50.000 0.00 0.00 45.49 4.41
308 338 1.936547 GCTCACAGTAATAGCACCAGC 59.063 52.381 0.00 0.00 42.56 4.85
309 339 3.193263 CTGCTCACAGTAATAGCACCAG 58.807 50.000 0.00 0.00 41.15 4.00
310 340 2.093500 CCTGCTCACAGTAATAGCACCA 60.093 50.000 0.00 0.00 42.81 4.17
311 341 2.168521 TCCTGCTCACAGTAATAGCACC 59.831 50.000 0.00 0.00 42.81 5.01
312 342 3.190874 GTCCTGCTCACAGTAATAGCAC 58.809 50.000 0.00 0.00 42.81 4.40
327 357 0.389757 GAGGGGTAGAATCGTCCTGC 59.610 60.000 0.00 0.00 0.00 4.85
361 432 3.114616 CACTCTCAACCGCTGCCG 61.115 66.667 0.00 0.00 0.00 5.69
392 463 3.576356 GTGTGATGCGATGGGGCG 61.576 66.667 0.00 0.00 35.06 6.13
393 464 3.211963 GGTGTGATGCGATGGGGC 61.212 66.667 0.00 0.00 0.00 5.80
394 465 2.516930 GGGTGTGATGCGATGGGG 60.517 66.667 0.00 0.00 0.00 4.96
398 469 2.819595 GTGCGGGTGTGATGCGAT 60.820 61.111 0.00 0.00 0.00 4.58
420 508 1.573436 GTCGGATCGGCGGTACTAG 59.427 63.158 7.21 0.00 0.00 2.57
431 519 0.878961 GTGGTAATGGCGGTCGGATC 60.879 60.000 0.00 0.00 0.00 3.36
432 520 1.145377 GTGGTAATGGCGGTCGGAT 59.855 57.895 0.00 0.00 0.00 4.18
433 521 2.580276 GTGGTAATGGCGGTCGGA 59.420 61.111 0.00 0.00 0.00 4.55
434 522 2.512974 GGTGGTAATGGCGGTCGG 60.513 66.667 0.00 0.00 0.00 4.79
435 523 2.512974 GGGTGGTAATGGCGGTCG 60.513 66.667 0.00 0.00 0.00 4.79
436 524 0.818040 GATGGGTGGTAATGGCGGTC 60.818 60.000 0.00 0.00 0.00 4.79
437 525 1.226262 GATGGGTGGTAATGGCGGT 59.774 57.895 0.00 0.00 0.00 5.68
519 614 0.109458 CACGAGTACTTGTAGCCGCA 60.109 55.000 15.57 0.00 0.00 5.69
592 689 3.979497 GGTGGTTGGGTGAGGGGG 61.979 72.222 0.00 0.00 0.00 5.40
595 692 3.979497 GGGGGTGGTTGGGTGAGG 61.979 72.222 0.00 0.00 0.00 3.86
599 696 4.542627 TGGAGGGGGTGGTTGGGT 62.543 66.667 0.00 0.00 0.00 4.51
632 731 2.737376 GCGGGTTCGTGAGTCACC 60.737 66.667 17.57 3.27 38.89 4.02
663 773 3.382832 CGCCGGAGTTCCCTGTCT 61.383 66.667 5.05 0.00 0.00 3.41
667 777 4.065281 CGAACGCCGGAGTTCCCT 62.065 66.667 35.58 12.53 45.56 4.20
670 780 3.774702 GTGCGAACGCCGGAGTTC 61.775 66.667 33.49 33.49 45.05 3.01
724 851 0.474184 ACACAGAACCCAGACCCAAG 59.526 55.000 0.00 0.00 0.00 3.61
725 852 0.923358 AACACAGAACCCAGACCCAA 59.077 50.000 0.00 0.00 0.00 4.12
731 858 2.364632 TCAACACAACACAGAACCCAG 58.635 47.619 0.00 0.00 0.00 4.45
787 920 1.666872 GAGGCGGTTGTTAGCGTGT 60.667 57.895 0.00 0.00 46.45 4.49
856 989 4.895478 TTATACCCCGCGCACGCC 62.895 66.667 8.75 0.00 38.22 5.68
857 990 3.335534 CTTATACCCCGCGCACGC 61.336 66.667 8.75 4.64 38.22 5.34
858 991 1.947642 GTCTTATACCCCGCGCACG 60.948 63.158 8.75 0.00 39.67 5.34
859 992 1.593479 GGTCTTATACCCCGCGCAC 60.593 63.158 8.75 0.00 43.16 5.34
860 993 2.816718 GGTCTTATACCCCGCGCA 59.183 61.111 8.75 0.00 43.16 6.09
918 1054 1.929169 CTCAGCAATGCGAAATCGAGA 59.071 47.619 7.06 0.00 43.02 4.04
1122 1275 3.896133 GACGATAGCCCGCGGTCA 61.896 66.667 26.12 8.88 42.67 4.02
1131 1284 2.051166 GCCTCCGACGACGATAGC 60.051 66.667 9.28 4.30 42.66 2.97
1419 1578 2.202987 GACTGGATCTGGCGCAGG 60.203 66.667 10.83 0.09 31.51 4.85
1596 1755 3.827898 GTCTCGCCGGTGAGGGAG 61.828 72.222 37.63 18.92 41.48 4.30
1698 1857 1.514087 GGAGCCATTGACGACGGTA 59.486 57.895 0.00 0.00 0.00 4.02
2148 2806 4.308458 TTGGTGGTCAGCGTCCCG 62.308 66.667 0.00 0.00 0.00 5.14
2154 2812 0.250901 ACATCTGGTTGGTGGTCAGC 60.251 55.000 0.00 0.00 0.00 4.26
2193 2851 2.203252 CCTGGGGCATCACCGATG 60.203 66.667 0.00 0.00 42.37 3.84
2217 2875 0.390472 CGTCCACCTTGAAGCTCCTC 60.390 60.000 0.00 0.00 0.00 3.71
2241 2899 1.343142 CCATCACGGGGATCATACGAA 59.657 52.381 9.44 0.00 32.57 3.85
2262 2920 4.427312 CAGCAGGCCAGTCATAAATTTTC 58.573 43.478 5.01 0.00 0.00 2.29
2464 3124 2.423577 AGCACCACCGTATTCTCAAAC 58.576 47.619 0.00 0.00 0.00 2.93
2467 3127 2.829720 AGTAAGCACCACCGTATTCTCA 59.170 45.455 0.00 0.00 0.00 3.27
2475 3135 2.967362 TGTATCAAGTAAGCACCACCG 58.033 47.619 0.00 0.00 0.00 4.94
2493 3153 7.773690 ACTGTATCCTAAACTGTTCAGTTTTGT 59.226 33.333 27.84 16.82 41.58 2.83
2538 3198 4.271049 ACTGTCTGAATTTGAACTGACACG 59.729 41.667 0.00 0.00 39.01 4.49
2547 3207 6.427853 CCAACATCAGTACTGTCTGAATTTGA 59.572 38.462 24.97 6.03 45.65 2.69
2606 3267 5.983118 CCTACAAGAAACCAACCAACAAATC 59.017 40.000 0.00 0.00 0.00 2.17
2650 3311 2.701951 ACCGTTCTTTCCTTCAGGTACA 59.298 45.455 0.00 0.00 36.34 2.90
2745 3406 7.218773 CAGCACGTATCAGAAAATACCAAAATG 59.781 37.037 0.00 0.00 0.00 2.32
2752 3416 4.566759 TCAGCAGCACGTATCAGAAAATAC 59.433 41.667 0.00 0.00 0.00 1.89
2800 3464 8.659925 TGACAGCAAACAATATCACAAAATTT 57.340 26.923 0.00 0.00 0.00 1.82
2976 3640 0.819582 CATGTCAGTGGGAAATGGCC 59.180 55.000 0.00 0.00 37.55 5.36
2992 3656 8.568732 AACGCGGGATAATTTTATTTAACATG 57.431 30.769 12.47 0.00 0.00 3.21
3012 3677 3.398954 AACAATTGGTGCTATAACGCG 57.601 42.857 10.83 3.53 0.00 6.01
3015 3680 8.794406 CGAACATAAAACAATTGGTGCTATAAC 58.206 33.333 10.83 0.00 0.00 1.89
3021 3686 3.987220 AGCGAACATAAAACAATTGGTGC 59.013 39.130 10.83 0.00 0.00 5.01
3023 3688 4.279671 TCCAGCGAACATAAAACAATTGGT 59.720 37.500 10.83 0.00 0.00 3.67
3024 3689 4.804108 TCCAGCGAACATAAAACAATTGG 58.196 39.130 10.83 0.00 0.00 3.16
3025 3690 5.343058 CACTCCAGCGAACATAAAACAATTG 59.657 40.000 3.24 3.24 0.00 2.32
3026 3691 5.240623 TCACTCCAGCGAACATAAAACAATT 59.759 36.000 0.00 0.00 0.00 2.32
3121 3787 0.107312 CTGAACCATCCTGGAGCTGG 60.107 60.000 13.62 13.62 40.96 4.85
3127 3793 0.883833 GCACAACTGAACCATCCTGG 59.116 55.000 0.00 0.00 45.02 4.45
3181 3847 7.522073 GCTTTTGTTGACAATTCATGGAGACTA 60.522 37.037 0.00 0.00 35.55 2.59
3319 3985 8.739039 CCAACAAATATCAGGTCAGTTTCAATA 58.261 33.333 0.00 0.00 0.00 1.90
3439 4107 0.413037 TCATGGTCCCCAGCCAAAAT 59.587 50.000 0.00 0.00 39.72 1.82
3475 4143 5.227908 CAATTGCAAGGAATCATATCCAGC 58.772 41.667 4.94 0.60 42.27 4.85
3479 4147 5.919141 GTCAGCAATTGCAAGGAATCATATC 59.081 40.000 30.89 8.81 45.16 1.63
3496 4164 7.229306 ACATTCAGAATAAAGACTTGTCAGCAA 59.771 33.333 0.00 0.00 0.00 3.91
3732 4407 1.901464 GGCCACCTTTCCTTCGCAA 60.901 57.895 0.00 0.00 0.00 4.85
3818 4493 3.334583 TCTCCAGTCATAGCAACAACC 57.665 47.619 0.00 0.00 0.00 3.77
3899 4574 5.997746 GCATTAAGAATATACCTCAGTGCCA 59.002 40.000 0.00 0.00 0.00 4.92
4021 4710 1.761784 TGGTGTAAGGTTGTACGGTGT 59.238 47.619 0.00 0.00 0.00 4.16
4034 4723 1.270571 TGCAATCACGCTCTGGTGTAA 60.271 47.619 0.00 0.00 39.00 2.41
4035 4724 0.320050 TGCAATCACGCTCTGGTGTA 59.680 50.000 0.00 0.00 39.00 2.90
4045 4734 2.490328 ACTTGTGGTTTGCAATCACG 57.510 45.000 20.89 13.75 34.43 4.35
4047 4736 4.142071 TGCTAAACTTGTGGTTTGCAATCA 60.142 37.500 0.00 0.00 46.30 2.57
4074 4763 5.235850 TCAGCCTAGGTATGTTTTGTGAA 57.764 39.130 11.31 0.00 0.00 3.18
4105 4794 3.594603 ACAGCGCATCTACAGTTTAGT 57.405 42.857 11.47 0.00 0.00 2.24
4137 4826 4.695928 GTGATGGTGGTTCCTAGTTTTCTC 59.304 45.833 0.00 0.00 37.07 2.87
4145 4834 6.816616 TGTAATATGTGATGGTGGTTCCTA 57.183 37.500 0.00 0.00 37.07 2.94
4162 4851 9.662947 CTGCTCTGGATCATGAAATATGTAATA 57.337 33.333 0.00 0.00 0.00 0.98
4165 4854 7.234166 TCTCTGCTCTGGATCATGAAATATGTA 59.766 37.037 0.00 0.00 0.00 2.29
4225 4914 5.593909 AGTGCAAAATGATGGATAATTCCGA 59.406 36.000 0.00 0.00 45.89 4.55
4227 4916 9.252962 CTAAAGTGCAAAATGATGGATAATTCC 57.747 33.333 0.00 0.00 42.94 3.01
4315 5005 9.829507 AGACAAACAATGGTTTTGAAAATATCA 57.170 25.926 0.00 0.00 44.63 2.15
4319 5009 9.007901 TGAAAGACAAACAATGGTTTTGAAAAT 57.992 25.926 0.00 0.00 44.63 1.82
4322 5012 7.095017 GGTTGAAAGACAAACAATGGTTTTGAA 60.095 33.333 0.00 0.00 44.63 2.69
4416 5107 5.918426 AGTTTACAGAGGGAGTAGTTAGC 57.082 43.478 0.00 0.00 0.00 3.09
4417 5108 8.968969 ACATTAGTTTACAGAGGGAGTAGTTAG 58.031 37.037 0.00 0.00 0.00 2.34
4418 5109 8.890410 ACATTAGTTTACAGAGGGAGTAGTTA 57.110 34.615 0.00 0.00 0.00 2.24
4419 5110 7.793948 ACATTAGTTTACAGAGGGAGTAGTT 57.206 36.000 0.00 0.00 0.00 2.24
4420 5111 8.890410 TTACATTAGTTTACAGAGGGAGTAGT 57.110 34.615 0.00 0.00 0.00 2.73
4421 5112 9.186837 TCTTACATTAGTTTACAGAGGGAGTAG 57.813 37.037 0.00 0.00 0.00 2.57
4422 5113 9.710818 ATCTTACATTAGTTTACAGAGGGAGTA 57.289 33.333 0.00 0.00 0.00 2.59
4426 5117 7.490000 ACGATCTTACATTAGTTTACAGAGGG 58.510 38.462 0.00 0.00 0.00 4.30
4427 5118 8.928270 AACGATCTTACATTAGTTTACAGAGG 57.072 34.615 0.00 0.00 0.00 3.69
4478 5169 9.601217 CCCCCTCTGTAAATTAATATAAGATCG 57.399 37.037 0.00 0.00 0.00 3.69
4481 5172 8.161425 GCACCCCCTCTGTAAATTAATATAAGA 58.839 37.037 0.00 0.00 0.00 2.10
4482 5173 7.942341 TGCACCCCCTCTGTAAATTAATATAAG 59.058 37.037 0.00 0.00 0.00 1.73
4483 5174 7.817440 TGCACCCCCTCTGTAAATTAATATAA 58.183 34.615 0.00 0.00 0.00 0.98
4484 5175 7.395525 TGCACCCCCTCTGTAAATTAATATA 57.604 36.000 0.00 0.00 0.00 0.86
4485 5176 6.274322 TGCACCCCCTCTGTAAATTAATAT 57.726 37.500 0.00 0.00 0.00 1.28
4486 5177 5.718801 TGCACCCCCTCTGTAAATTAATA 57.281 39.130 0.00 0.00 0.00 0.98
4487 5178 4.601406 TGCACCCCCTCTGTAAATTAAT 57.399 40.909 0.00 0.00 0.00 1.40
4488 5179 4.390129 TTGCACCCCCTCTGTAAATTAA 57.610 40.909 0.00 0.00 0.00 1.40
4489 5180 4.390129 TTTGCACCCCCTCTGTAAATTA 57.610 40.909 0.00 0.00 0.00 1.40
4490 5181 2.990740 TTGCACCCCCTCTGTAAATT 57.009 45.000 0.00 0.00 0.00 1.82
4491 5182 2.990740 TTTGCACCCCCTCTGTAAAT 57.009 45.000 0.00 0.00 0.00 1.40
4492 5183 2.757894 TTTTGCACCCCCTCTGTAAA 57.242 45.000 0.00 0.00 0.00 2.01
4493 5184 2.990740 ATTTTGCACCCCCTCTGTAA 57.009 45.000 0.00 0.00 0.00 2.41
4494 5185 2.916934 AGTATTTTGCACCCCCTCTGTA 59.083 45.455 0.00 0.00 0.00 2.74
4495 5186 1.710809 AGTATTTTGCACCCCCTCTGT 59.289 47.619 0.00 0.00 0.00 3.41
4496 5187 2.094675 CAGTATTTTGCACCCCCTCTG 58.905 52.381 0.00 0.00 0.00 3.35
4497 5188 1.710809 ACAGTATTTTGCACCCCCTCT 59.289 47.619 0.00 0.00 0.00 3.69
4498 5189 2.215942 ACAGTATTTTGCACCCCCTC 57.784 50.000 0.00 0.00 0.00 4.30
4499 5190 2.632512 CAAACAGTATTTTGCACCCCCT 59.367 45.455 0.00 0.00 30.00 4.79
4500 5191 2.630580 TCAAACAGTATTTTGCACCCCC 59.369 45.455 0.00 0.00 36.56 5.40
4501 5192 3.320826 ACTCAAACAGTATTTTGCACCCC 59.679 43.478 0.00 0.00 36.56 4.95
4502 5193 4.584327 ACTCAAACAGTATTTTGCACCC 57.416 40.909 0.00 0.00 36.56 4.61
4503 5194 4.744631 CCAACTCAAACAGTATTTTGCACC 59.255 41.667 0.00 0.00 36.56 5.01
4504 5195 5.458779 GTCCAACTCAAACAGTATTTTGCAC 59.541 40.000 0.00 0.00 36.56 4.57
4505 5196 5.451242 GGTCCAACTCAAACAGTATTTTGCA 60.451 40.000 0.00 0.00 36.56 4.08
4506 5197 4.982295 GGTCCAACTCAAACAGTATTTTGC 59.018 41.667 0.00 0.00 36.56 3.68
4509 5200 5.445964 ACTGGTCCAACTCAAACAGTATTT 58.554 37.500 0.00 0.00 37.41 1.40
4585 5283 9.007901 AGCCTAATTTTGCATATATCACTCTTC 57.992 33.333 0.00 0.00 0.00 2.87
4608 5307 6.313658 CCCAAATTATAAGCTGAACAAAAGCC 59.686 38.462 0.00 0.00 41.82 4.35
4810 5511 2.230992 AGCAATCGCAAAACTGCCAATA 59.769 40.909 0.00 0.00 42.27 1.90
4824 5525 3.853671 GGTACTGAAATTGCAAGCAATCG 59.146 43.478 19.42 11.27 44.86 3.34
4899 5630 9.494271 TGAATGTAAAATCTAGATAGATGGCAC 57.506 33.333 5.46 3.09 41.96 5.01
4942 5674 5.251764 ACTTTCAGAATACTCAAGCAGCAT 58.748 37.500 0.00 0.00 0.00 3.79
5222 5972 4.336433 GGGATCAAACAGATATGTGGTGTG 59.664 45.833 4.70 0.05 37.00 3.82
5223 5973 4.228210 AGGGATCAAACAGATATGTGGTGT 59.772 41.667 4.70 0.00 37.00 4.16
5252 6002 7.785033 TCAAAAAGAAAGAAAGGCAGAGATTT 58.215 30.769 0.00 0.00 0.00 2.17
5296 6047 6.293626 CCAATGACCTGCAAGTTATGTATAGC 60.294 42.308 0.00 0.00 0.00 2.97
5544 6296 1.961277 CGTCGCCTTCACTTTGCCT 60.961 57.895 0.00 0.00 0.00 4.75
5568 6320 3.973516 ACGAGCACGGACAGCGAA 61.974 61.111 8.74 0.00 44.46 4.70
5574 6330 4.796231 ATCGCCACGAGCACGGAC 62.796 66.667 8.74 0.00 44.04 4.79
5725 6489 1.082756 CAAACACTTGCGCGAGGAC 60.083 57.895 27.88 0.00 0.00 3.85
5748 6512 3.258228 ATTCAGGCTGAGCGGCACA 62.258 57.895 17.91 0.20 41.46 4.57
5766 6530 1.001764 CAGCACCAGGAGCCATTCA 60.002 57.895 5.06 0.00 0.00 2.57
5769 6533 3.336568 AGCAGCACCAGGAGCCAT 61.337 61.111 5.06 0.00 0.00 4.40
5793 6557 3.391665 GATGAGCACCACGGGGAGG 62.392 68.421 12.96 2.41 38.05 4.30
5905 6669 4.889807 AACAACCGCTGTTAGCCA 57.110 50.000 0.00 0.00 46.75 4.75
5987 6756 1.349688 TCCTTTGGCGACCACTGTTAT 59.650 47.619 0.00 0.00 30.78 1.89
6040 6809 8.661345 AGAACCCTTTTATCTACTTCAGTTTCT 58.339 33.333 0.00 0.00 0.00 2.52
6041 6810 8.850007 AGAACCCTTTTATCTACTTCAGTTTC 57.150 34.615 0.00 0.00 0.00 2.78
6042 6811 9.067986 CAAGAACCCTTTTATCTACTTCAGTTT 57.932 33.333 0.00 0.00 0.00 2.66
6199 7012 6.403866 AACAAAGCAATATTCCAACACTCA 57.596 33.333 0.00 0.00 0.00 3.41
6238 7051 0.537143 TGCACTCCAGTTCGGCAAAT 60.537 50.000 0.00 0.00 33.14 2.32
6239 7052 0.749818 TTGCACTCCAGTTCGGCAAA 60.750 50.000 0.00 0.00 41.05 3.68
6249 7062 8.744568 TGTGATGTATAATTATTTGCACTCCA 57.255 30.769 2.68 0.00 0.00 3.86
6295 7519 1.402852 GCTTCCCAACCTTCGCAAATC 60.403 52.381 0.00 0.00 0.00 2.17
6304 7528 2.185310 ATTCGCTCGCTTCCCAACCT 62.185 55.000 0.00 0.00 0.00 3.50
6307 7531 2.398554 GCATTCGCTCGCTTCCCAA 61.399 57.895 0.00 0.00 34.30 4.12
6308 7532 2.819595 GCATTCGCTCGCTTCCCA 60.820 61.111 0.00 0.00 34.30 4.37
6320 7544 0.737715 AGTCGGCTCAACTCGCATTC 60.738 55.000 0.00 0.00 0.00 2.67
6337 7561 3.751698 GCTTGAAACCGGACTAAATGAGT 59.248 43.478 9.46 0.00 42.90 3.41
6338 7562 3.127030 GGCTTGAAACCGGACTAAATGAG 59.873 47.826 9.46 0.00 0.00 2.90
6339 7563 3.078837 GGCTTGAAACCGGACTAAATGA 58.921 45.455 9.46 0.00 0.00 2.57
6340 7564 3.081804 AGGCTTGAAACCGGACTAAATG 58.918 45.455 9.46 0.00 0.00 2.32
6380 7604 7.609760 AGAAAATGGAAAACAAGTGAAAACC 57.390 32.000 0.00 0.00 0.00 3.27
6390 7614 4.572795 GCCGGAAAAAGAAAATGGAAAACA 59.427 37.500 5.05 0.00 0.00 2.83
6392 7616 4.813697 CAGCCGGAAAAAGAAAATGGAAAA 59.186 37.500 5.05 0.00 0.00 2.29
6396 7620 3.385193 ACAGCCGGAAAAAGAAAATGG 57.615 42.857 5.05 0.00 0.00 3.16
6411 7635 6.332735 AGAAATCAGGTAAAAGAAACAGCC 57.667 37.500 0.00 0.00 0.00 4.85
6491 7715 8.786898 TGAACAATTTTTGAAATTCCAAACACA 58.213 25.926 0.00 0.00 35.95 3.72
6760 7987 0.462759 AGGCAAGTTATCCAGCGCTC 60.463 55.000 7.13 0.00 0.00 5.03
6763 7990 1.017387 GGAAGGCAAGTTATCCAGCG 58.983 55.000 0.00 0.00 32.08 5.18
6782 8009 1.060713 CATCCTAATTCTACGGCGCG 58.939 55.000 6.90 0.00 0.00 6.86
6783 8010 0.790814 GCATCCTAATTCTACGGCGC 59.209 55.000 6.90 0.00 0.00 6.53
6804 8031 1.338200 GGGCAGGATCTAGCGGTTATG 60.338 57.143 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.